[1] "ofn"        "-oTSTAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/STAD-TP/20140953/STAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/STAD-TP/20214823/transformed.cor.cli.txt"

nPatients in clinical file=443, in cluster file=289, common to both=289
[1] "Reduce the number of clustering variables from 790 to 788."
[1] 788 289
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           138            151 
  TP53 MUTATED TP53 WILD-TYPE 
           138            151 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              90              199 
  ARID1A MUTATED ARID1A WILD-TYPE 
              90              199 
[1] "RNF43 MUTATION ANALYSIS"
[1] 3
  RNF43 MUTATED RNF43 WILD-TYPE 
             49             240 
  RNF43 MUTATED RNF43 WILD-TYPE 
             49             240 
[1] "MLL4 MUTATION ANALYSIS"
[1] 3
  MLL4 MUTATED MLL4 WILD-TYPE 
            38            251 
  MLL4 MUTATED MLL4 WILD-TYPE 
            38            251 
[1] "XYLT2 MUTATION ANALYSIS"
[1] 3
  XYLT2 MUTATED XYLT2 WILD-TYPE 
             32             257 
  XYLT2 MUTATED XYLT2 WILD-TYPE 
             32             257 
[1] "LARP4B MUTATION ANALYSIS"
[1] 3
  LARP4B MUTATED LARP4B WILD-TYPE 
              27              262 
  LARP4B MUTATED LARP4B WILD-TYPE 
              27              262 
[1] "BZRAP1 MUTATION ANALYSIS"
[1] 3
  BZRAP1 MUTATED BZRAP1 WILD-TYPE 
              46              243 
  BZRAP1 MUTATED BZRAP1 WILD-TYPE 
              46              243 
[1] "B2M MUTATION ANALYSIS"
[1] 3
  B2M MUTATED B2M WILD-TYPE 
           17           272 
  B2M MUTATED B2M WILD-TYPE 
           17           272 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            28            261 
  KRAS MUTATED KRAS WILD-TYPE 
            28            261 
[1] "HLA-B MUTATION ANALYSIS"
[1] 3
  HLA-B MUTATED HLA-B WILD-TYPE 
             20             269 
  HLA-B MUTATED HLA-B WILD-TYPE 
             20             269 
[1] "GNG12 MUTATION ANALYSIS"
[1] 3
  GNG12 MUTATED GNG12 WILD-TYPE 
             11             278 
  GNG12 MUTATED GNG12 WILD-TYPE 
             11             278 
[1] "PLEKHA6 MUTATION ANALYSIS"
[1] 3
  PLEKHA6 MUTATED PLEKHA6 WILD-TYPE 
               20               269 
  PLEKHA6 MUTATED PLEKHA6 WILD-TYPE 
               20               269 
[1] "CDH1 MUTATION ANALYSIS"
[1] 3
  CDH1 MUTATED CDH1 WILD-TYPE 
            29            260 
  CDH1 MUTATED CDH1 WILD-TYPE 
            29            260 
[1] "RHOA MUTATION ANALYSIS"
[1] 3
  RHOA MUTATED RHOA WILD-TYPE 
            16            273 
  RHOA MUTATED RHOA WILD-TYPE 
            16            273 
[1] "LMAN1 MUTATION ANALYSIS"
[1] 3
  LMAN1 MUTATED LMAN1 WILD-TYPE 
             19             270 
  LMAN1 MUTATED LMAN1 WILD-TYPE 
             19             270 
[1] "KLF3 MUTATION ANALYSIS"
[1] 3
  KLF3 MUTATED KLF3 WILD-TYPE 
            19            270 
  KLF3 MUTATED KLF3 WILD-TYPE 
            19            270 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            23            266 
  PTEN MUTATED PTEN WILD-TYPE 
            23            266 
[1] "MTG1 MUTATION ANALYSIS"
[1] 3
  MTG1 MUTATED MTG1 WILD-TYPE 
             9            280 
  MTG1 MUTATED MTG1 WILD-TYPE 
             9            280 
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             27             262 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             27             262 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             24             265 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             24             265 
[1] "ZBTB20 MUTATION ANALYSIS"
[1] 3
  ZBTB20 MUTATED ZBTB20 WILD-TYPE 
              28              261 
  ZBTB20 MUTATED ZBTB20 WILD-TYPE 
              28              261 
[1] "HLA-A MUTATION ANALYSIS"
[1] 3
  HLA-A MUTATED HLA-A WILD-TYPE 
             15             274 
  HLA-A MUTATED HLA-A WILD-TYPE 
             15             274 
[1] "FRMD4A MUTATION ANALYSIS"
[1] 3
  FRMD4A MUTATED FRMD4A WILD-TYPE 
              18              271 
  FRMD4A MUTATED FRMD4A WILD-TYPE 
              18              271 
[1] "CTCF MUTATION ANALYSIS"
[1] 3
  CTCF MUTATED CTCF WILD-TYPE 
            18            271 
  CTCF MUTATED CTCF WILD-TYPE 
            18            271 
[1] "MLL2 MUTATION ANALYSIS"
[1] 3
  MLL2 MUTATED MLL2 WILD-TYPE 
            59            230 
  MLL2 MUTATED MLL2 WILD-TYPE 
            59            230 
[1] "MVK MUTATION ANALYSIS"
[1] 3
  MVK MUTATED MVK WILD-TYPE 
           13           276 
  MVK MUTATED MVK WILD-TYPE 
           13           276 
[1] "MBD6 MUTATION ANALYSIS"
[1] 3
  MBD6 MUTATED MBD6 WILD-TYPE 
            23            266 
  MBD6 MUTATED MBD6 WILD-TYPE 
            23            266 
[1] "APC MUTATION ANALYSIS"
[1] 3
  APC MUTATED APC WILD-TYPE 
           42           247 
  APC MUTATED APC WILD-TYPE 
           42           247 
[1] "CD4 MUTATION ANALYSIS"
[1] 3
  CD4 MUTATED CD4 WILD-TYPE 
           15           274 
  CD4 MUTATED CD4 WILD-TYPE 
           15           274 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              57              232 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              57              232 
[1] "JARID2 MUTATION ANALYSIS"
[1] 3
  JARID2 MUTATED JARID2 WILD-TYPE 
              28              261 
  JARID2 MUTATED JARID2 WILD-TYPE 
              28              261 
[1] "PAX6 MUTATION ANALYSIS"
[1] 3
  PAX6 MUTATED PAX6 WILD-TYPE 
            19            270 
  PAX6 MUTATED PAX6 WILD-TYPE 
            19            270 
[1] "SNAPC2 MUTATION ANALYSIS"
[1] 3
  SNAPC2 MUTATED SNAPC2 WILD-TYPE 
              11              278 
  SNAPC2 MUTATED SNAPC2 WILD-TYPE 
              11              278 
[1] "KIAA0182 MUTATION ANALYSIS"
[1] 3
  KIAA0182 MUTATED KIAA0182 WILD-TYPE 
                20                269 
  KIAA0182 MUTATED KIAA0182 WILD-TYPE 
                20                269 
[1] "AOC3 MUTATION ANALYSIS"
[1] 3
  AOC3 MUTATED AOC3 WILD-TYPE 
            13            276 
  AOC3 MUTATED AOC3 WILD-TYPE 
            13            276 
[1] "ZBTB7C MUTATION ANALYSIS"
[1] 3
  ZBTB7C MUTATED ZBTB7C WILD-TYPE 
              15              274 
  ZBTB7C MUTATED ZBTB7C WILD-TYPE 
              15              274 
[1] "NLK MUTATION ANALYSIS"
[1] 3
  NLK MUTATED NLK WILD-TYPE 
           12           277 
  NLK MUTATED NLK WILD-TYPE 
           12           277 
[1] "WBP1 MUTATION ANALYSIS"
[1] 3
  WBP1 MUTATED WBP1 WILD-TYPE 
             8            281 
  WBP1 MUTATED WBP1 WILD-TYPE 
             8            281 
[1] "TMEM41A MUTATION ANALYSIS"
[1] 3
  TMEM41A MUTATED TMEM41A WILD-TYPE 
                6               283 
  TMEM41A MUTATED TMEM41A WILD-TYPE 
                6               283 
[1] "POLM MUTATION ANALYSIS"
[1] 3
  POLM MUTATED POLM WILD-TYPE 
            10            279 
  POLM MUTATED POLM WILD-TYPE 
            10            279 
[1] "ATP6V1B1 MUTATION ANALYSIS"
[1] 3
  ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE 
                20                269 
  ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE 
                20                269 
[1] "MUC6 MUTATION ANALYSIS"
[1] 3
  MUC6 MUTATED MUC6 WILD-TYPE 
            34            255 
  MUC6 MUTATED MUC6 WILD-TYPE 
            34            255 
[1] "CIC MUTATION ANALYSIS"
[1] 3
  CIC MUTATED CIC WILD-TYPE 
           26           263 
  CIC MUTATED CIC WILD-TYPE 
           26           263 
[1] "SLC27A3 MUTATION ANALYSIS"
[1] 3
  SLC27A3 MUTATED SLC27A3 WILD-TYPE 
                9               280 
  SLC27A3 MUTATED SLC27A3 WILD-TYPE 
                9               280 
[1] "ZMYM4 MUTATION ANALYSIS"
[1] 3
  ZMYM4 MUTATED ZMYM4 WILD-TYPE 
             17             272 
  ZMYM4 MUTATED ZMYM4 WILD-TYPE 
             17             272 
[1] "NT5M MUTATION ANALYSIS"
[1] 3
  NT5M MUTATED NT5M WILD-TYPE 
             5            284 
  NT5M MUTATED NT5M WILD-TYPE 
             5            284 
[1] "BCL9L MUTATION ANALYSIS"
[1] 3
  BCL9L MUTATED BCL9L WILD-TYPE 
             24             265 
  BCL9L MUTATED BCL9L WILD-TYPE 
             24             265 
[1] "CCDC153 MUTATION ANALYSIS"
[1] 3
  CCDC153 MUTATED CCDC153 WILD-TYPE 
                8               281 
  CCDC153 MUTATED CCDC153 WILD-TYPE 
                8               281 
[1] "IRF2 MUTATION ANALYSIS"
[1] 3
  IRF2 MUTATED IRF2 WILD-TYPE 
            15            274 
  IRF2 MUTATED IRF2 WILD-TYPE 
            15            274 
[1] "ADAM28 MUTATION ANALYSIS"
[1] 3
  ADAM28 MUTATED ADAM28 WILD-TYPE 
              14              275 
  ADAM28 MUTATED ADAM28 WILD-TYPE 
              14              275 
[1] "BCOR MUTATION ANALYSIS"
[1] 3
  BCOR MUTATED BCOR WILD-TYPE 
            21            268 
  BCOR MUTATED BCOR WILD-TYPE 
            21            268 
[1] "GLI1 MUTATION ANALYSIS"
[1] 3
  GLI1 MUTATED GLI1 WILD-TYPE 
            17            272 
  GLI1 MUTATED GLI1 WILD-TYPE 
            17            272 
[1] "DDC MUTATION ANALYSIS"
[1] 3
  DDC MUTATED DDC WILD-TYPE 
            9           280 
  DDC MUTATED DDC WILD-TYPE 
            9           280 
[1] "TBX4 MUTATION ANALYSIS"
[1] 3
  TBX4 MUTATED TBX4 WILD-TYPE 
            11            278 
  TBX4 MUTATED TBX4 WILD-TYPE 
            11            278 
[1] "GXYLT1 MUTATION ANALYSIS"
[1] 3
  GXYLT1 MUTATED GXYLT1 WILD-TYPE 
              12              277 
  GXYLT1 MUTATED GXYLT1 WILD-TYPE 
              12              277 
[1] "IWS1 MUTATION ANALYSIS"
[1] 3
  IWS1 MUTATED IWS1 WILD-TYPE 
            12            277 
  IWS1 MUTATED IWS1 WILD-TYPE 
            12            277 
[1] "C7ORF50 MUTATION ANALYSIS"
[1] 3
  C7ORF50 MUTATED C7ORF50 WILD-TYPE 
               10               279 
  C7ORF50 MUTATED C7ORF50 WILD-TYPE 
               10               279 
[1] "GAS6 MUTATION ANALYSIS"
[1] 3
  GAS6 MUTATED GAS6 WILD-TYPE 
            16            273 
  GAS6 MUTATED GAS6 WILD-TYPE 
            16            273 
[1] "AKAP13 MUTATION ANALYSIS"
[1] 3
  AKAP13 MUTATED AKAP13 WILD-TYPE 
              28              261 
  AKAP13 MUTATED AKAP13 WILD-TYPE 
              28              261 
[1] "PLAGL2 MUTATION ANALYSIS"
[1] 3
  PLAGL2 MUTATED PLAGL2 WILD-TYPE 
               7              282 
  PLAGL2 MUTATED PLAGL2 WILD-TYPE 
               7              282 
[1] "C14ORF43 MUTATION ANALYSIS"
[1] 3
  C14ORF43 MUTATED C14ORF43 WILD-TYPE 
                20                269 
  C14ORF43 MUTATED C14ORF43 WILD-TYPE 
                20                269 
[1] "C1QTNF5 MUTATION ANALYSIS"
[1] 3
  C1QTNF5 MUTATED C1QTNF5 WILD-TYPE 
                5               284 
  C1QTNF5 MUTATED C1QTNF5 WILD-TYPE 
                5               284 
[1] "WDR5 MUTATION ANALYSIS"
[1] 3
  WDR5 MUTATED WDR5 WILD-TYPE 
             7            282 
  WDR5 MUTATED WDR5 WILD-TYPE 
             7            282 
[1] "PRSS36 MUTATION ANALYSIS"
[1] 3
  PRSS36 MUTATED PRSS36 WILD-TYPE 
              11              278 
  PRSS36 MUTATED PRSS36 WILD-TYPE 
              11              278 
[1] "PAFAH1B1 MUTATION ANALYSIS"
[1] 3
  PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE 
                12                277 
  PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE 
                12                277 
[1] "EPHA2 MUTATION ANALYSIS"
[1] 3
  EPHA2 MUTATED EPHA2 WILD-TYPE 
             23             266 
  EPHA2 MUTATED EPHA2 WILD-TYPE 
             23             266 
[1] "SLC16A6 MUTATION ANALYSIS"
[1] 3
  SLC16A6 MUTATED SLC16A6 WILD-TYPE 
                7               282 
  SLC16A6 MUTATED SLC16A6 WILD-TYPE 
                7               282 
[1] "C9ORF131 MUTATION ANALYSIS"
[1] 3
  C9ORF131 MUTATED C9ORF131 WILD-TYPE 
                13                276 
  C9ORF131 MUTATED C9ORF131 WILD-TYPE 
                13                276 
[1] "WNT16 MUTATION ANALYSIS"
[1] 3
  WNT16 MUTATED WNT16 WILD-TYPE 
             13             276 
  WNT16 MUTATED WNT16 WILD-TYPE 
             13             276 
[1] "SPTY2D1 MUTATION ANALYSIS"
[1] 3
  SPTY2D1 MUTATED SPTY2D1 WILD-TYPE 
               15               274 
  SPTY2D1 MUTATED SPTY2D1 WILD-TYPE 
               15               274 
[1] "GPSM3 MUTATION ANALYSIS"
[1] 3
  GPSM3 MUTATED GPSM3 WILD-TYPE 
             12             277 
  GPSM3 MUTATED GPSM3 WILD-TYPE 
             12             277 
[1] "ZNF878 MUTATION ANALYSIS"
[1] 3
  ZNF878 MUTATED ZNF878 WILD-TYPE 
              12              277 
  ZNF878 MUTATED ZNF878 WILD-TYPE 
              12              277 
[1] "CCDC88A MUTATION ANALYSIS"
[1] 3
  CCDC88A MUTATED CCDC88A WILD-TYPE 
               20               269 
  CCDC88A MUTATED CCDC88A WILD-TYPE 
               20               269 
[1] "FHDC1 MUTATION ANALYSIS"
[1] 3
  FHDC1 MUTATED FHDC1 WILD-TYPE 
             15             274 
  FHDC1 MUTATED FHDC1 WILD-TYPE 
             15             274 
[1] "ARHGAP5 MUTATION ANALYSIS"
[1] 3
  ARHGAP5 MUTATED ARHGAP5 WILD-TYPE 
               17               272 
  ARHGAP5 MUTATED ARHGAP5 WILD-TYPE 
               17               272 
[1] "CRYGA MUTATION ANALYSIS"
[1] 3
  CRYGA MUTATED CRYGA WILD-TYPE 
             10             279 
  CRYGA MUTATED CRYGA WILD-TYPE 
             10             279 
[1] "CDC14A MUTATION ANALYSIS"
[1] 3
  CDC14A MUTATED CDC14A WILD-TYPE 
              15              274 
  CDC14A MUTATED CDC14A WILD-TYPE 
              15              274 
[1] "BCORL1 MUTATION ANALYSIS"
[1] 3
  BCORL1 MUTATED BCORL1 WILD-TYPE 
              20              269 
  BCORL1 MUTATED BCORL1 WILD-TYPE 
              20              269 
[1] "PRRG3 MUTATION ANALYSIS"
[1] 3
  PRRG3 MUTATED PRRG3 WILD-TYPE 
              8             281 
  PRRG3 MUTATED PRRG3 WILD-TYPE 
              8             281 
[1] "OPTN MUTATION ANALYSIS"
[1] 3
  OPTN MUTATED OPTN WILD-TYPE 
             9            280 
  OPTN MUTATED OPTN WILD-TYPE 
             9            280 
[1] "RBM43 MUTATION ANALYSIS"
[1] 3
  RBM43 MUTATED RBM43 WILD-TYPE 
              9             280 
  RBM43 MUTATED RBM43 WILD-TYPE 
              9             280 
[1] "ZC3H18 MUTATION ANALYSIS"
[1] 3
  ZC3H18 MUTATED ZC3H18 WILD-TYPE 
              18              271 
  ZC3H18 MUTATED ZC3H18 WILD-TYPE 
              18              271 
[1] "CTSC MUTATION ANALYSIS"
[1] 3
  CTSC MUTATED CTSC WILD-TYPE 
            10            279 
  CTSC MUTATED CTSC WILD-TYPE 
            10            279 
[1] "RHOQ MUTATION ANALYSIS"
[1] 3
  RHOQ MUTATED RHOQ WILD-TYPE 
             5            284 
  RHOQ MUTATED RHOQ WILD-TYPE 
             5            284 
[1] "RALGAPB MUTATION ANALYSIS"
[1] 3
  RALGAPB MUTATED RALGAPB WILD-TYPE 
               18               271 
  RALGAPB MUTATED RALGAPB WILD-TYPE 
               18               271 
[1] "CR2 MUTATION ANALYSIS"
[1] 3
  CR2 MUTATED CR2 WILD-TYPE 
           20           269 
  CR2 MUTATED CR2 WILD-TYPE 
           20           269 
[1] "MSH6 MUTATION ANALYSIS"
[1] 3
  MSH6 MUTATED MSH6 WILD-TYPE 
            19            270 
  MSH6 MUTATED MSH6 WILD-TYPE 
            19            270 
[1] "ZFHX4 MUTATION ANALYSIS"
[1] 3
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
             53             236 
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
             53             236 
[1] "SLC10A6 MUTATION ANALYSIS"
[1] 3
  SLC10A6 MUTATED SLC10A6 WILD-TYPE 
                8               281 
  SLC10A6 MUTATED SLC10A6 WILD-TYPE 
                8               281 
[1] "LEMD1 MUTATION ANALYSIS"
[1] 3
  LEMD1 MUTATED LEMD1 WILD-TYPE 
              4             285 
  LEMD1 MUTATED LEMD1 WILD-TYPE 
              4             285 
[1] "KIF13A MUTATION ANALYSIS"
[1] 3
  KIF13A MUTATED KIF13A WILD-TYPE 
              20              269 
  KIF13A MUTATED KIF13A WILD-TYPE 
              20              269 
[1] "DDX17 MUTATION ANALYSIS"
[1] 3
  DDX17 MUTATED DDX17 WILD-TYPE 
             11             278 
  DDX17 MUTATED DDX17 WILD-TYPE 
             11             278 
[1] "RTN2 MUTATION ANALYSIS"
[1] 3
  RTN2 MUTATED RTN2 WILD-TYPE 
            11            278 
  RTN2 MUTATED RTN2 WILD-TYPE 
            11            278 
[1] "PAX2 MUTATION ANALYSIS"
[1] 3
  PAX2 MUTATED PAX2 WILD-TYPE 
             9            280 
  PAX2 MUTATED PAX2 WILD-TYPE 
             9            280 
[1] "KIAA0240 MUTATION ANALYSIS"
[1] 3
  KIAA0240 MUTATED KIAA0240 WILD-TYPE 
                12                277 
  KIAA0240 MUTATED KIAA0240 WILD-TYPE 
                12                277 
[1] "INPPL1 MUTATION ANALYSIS"
[1] 3
  INPPL1 MUTATED INPPL1 WILD-TYPE 
              22              267 
  INPPL1 MUTATED INPPL1 WILD-TYPE 
              22              267 
[1] "TFE3 MUTATION ANALYSIS"
[1] 3
  TFE3 MUTATED TFE3 WILD-TYPE 
             8            281 
  TFE3 MUTATED TFE3 WILD-TYPE 
             8            281 
[1] "BTBD7 MUTATION ANALYSIS"
[1] 3
  BTBD7 MUTATED BTBD7 WILD-TYPE 
             17             272 
  BTBD7 MUTATED BTBD7 WILD-TYPE 
             17             272 
[1] "PLOD3 MUTATION ANALYSIS"
[1] 3
  PLOD3 MUTATED PLOD3 WILD-TYPE 
             14             275 
  PLOD3 MUTATED PLOD3 WILD-TYPE 
             14             275 
[1] "NOX5 MUTATION ANALYSIS"
[1] 3
  NOX5 MUTATED NOX5 WILD-TYPE 
            14            275 
  NOX5 MUTATED NOX5 WILD-TYPE 
            14            275 
[1] "SNAPC1 MUTATION ANALYSIS"
[1] 3
  SNAPC1 MUTATED SNAPC1 WILD-TYPE 
               7              282 
  SNAPC1 MUTATED SNAPC1 WILD-TYPE 
               7              282 
[1] "FGGY MUTATION ANALYSIS"
[1] 3
  FGGY MUTATED FGGY WILD-TYPE 
             9            280 
  FGGY MUTATED FGGY WILD-TYPE 
             9            280 
[1] "ADAM30 MUTATION ANALYSIS"
[1] 3
  ADAM30 MUTATED ADAM30 WILD-TYPE 
              14              275 
  ADAM30 MUTATED ADAM30 WILD-TYPE 
              14              275 
[1] "EIF5B MUTATION ANALYSIS"
[1] 3
  EIF5B MUTATED EIF5B WILD-TYPE 
             18             271 
  EIF5B MUTATED EIF5B WILD-TYPE 
             18             271 
[1] "PYGO2 MUTATION ANALYSIS"
[1] 3
  PYGO2 MUTATED PYGO2 WILD-TYPE 
              7             282 
  PYGO2 MUTATED PYGO2 WILD-TYPE 
              7             282 
[1] "PRPF40B MUTATION ANALYSIS"
[1] 3
  PRPF40B MUTATED PRPF40B WILD-TYPE 
               14               275 
  PRPF40B MUTATED PRPF40B WILD-TYPE 
               14               275 
[1] "C6ORF89 MUTATION ANALYSIS"
[1] 3
  C6ORF89 MUTATED C6ORF89 WILD-TYPE 
                9               280 
  C6ORF89 MUTATED C6ORF89 WILD-TYPE 
                9               280 
[1] "ABCC4 MUTATION ANALYSIS"
[1] 3
  ABCC4 MUTATED ABCC4 WILD-TYPE 
             17             272 
  ABCC4 MUTATED ABCC4 WILD-TYPE 
             17             272 
[1] "USP21 MUTATION ANALYSIS"
[1] 3
  USP21 MUTATED USP21 WILD-TYPE 
             13             276 
  USP21 MUTATED USP21 WILD-TYPE 
             13             276 
[1] "SETDB2 MUTATION ANALYSIS"
[1] 3
  SETDB2 MUTATED SETDB2 WILD-TYPE 
              10              279 
  SETDB2 MUTATED SETDB2 WILD-TYPE 
              10              279 
[1] "TTF1 MUTATION ANALYSIS"
[1] 3
  TTF1 MUTATED TTF1 WILD-TYPE 
            14            275 
  TTF1 MUTATED TTF1 WILD-TYPE 
            14            275 
[1] "FLNB MUTATION ANALYSIS"
[1] 3
  FLNB MUTATED FLNB WILD-TYPE 
            24            265 
  FLNB MUTATED FLNB WILD-TYPE 
            24            265 
[1] "PMEPA1 MUTATION ANALYSIS"
[1] 3
  PMEPA1 MUTATED PMEPA1 WILD-TYPE 
               7              282 
  PMEPA1 MUTATED PMEPA1 WILD-TYPE 
               7              282 
[1] "TNFRSF9 MUTATION ANALYSIS"
[1] 3
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
               10               279 
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
               10               279 
[1] "PGM5 MUTATION ANALYSIS"
[1] 3
  PGM5 MUTATED PGM5 WILD-TYPE 
            25            264 
  PGM5 MUTATED PGM5 WILD-TYPE 
            25            264 
[1] "VPS13A MUTATION ANALYSIS"
[1] 3
  VPS13A MUTATED VPS13A WILD-TYPE 
              32              257 
  VPS13A MUTATED VPS13A WILD-TYPE 
              32              257 
[1] "FAM151A MUTATION ANALYSIS"
[1] 3
  FAM151A MUTATED FAM151A WILD-TYPE 
                9               280 
  FAM151A MUTATED FAM151A WILD-TYPE 
                9               280 
[1] "RASA1 MUTATION ANALYSIS"
[1] 3
  RASA1 MUTATED RASA1 WILD-TYPE 
             17             272 
  RASA1 MUTATED RASA1 WILD-TYPE 
             17             272 
[1] "ZNF48 MUTATION ANALYSIS"
[1] 3
  ZNF48 MUTATED ZNF48 WILD-TYPE 
             10             279 
  ZNF48 MUTATED ZNF48 WILD-TYPE 
             10             279 
[1] "GBP7 MUTATION ANALYSIS"
[1] 3
  GBP7 MUTATED GBP7 WILD-TYPE 
             9            280 
  GBP7 MUTATED GBP7 WILD-TYPE 
             9            280 
[1] "MAP7D1 MUTATION ANALYSIS"
[1] 3
  MAP7D1 MUTATED MAP7D1 WILD-TYPE 
              12              277 
  MAP7D1 MUTATED MAP7D1 WILD-TYPE 
              12              277 
[1] "SERPINI1 MUTATION ANALYSIS"
[1] 3
  SERPINI1 MUTATED SERPINI1 WILD-TYPE 
                 8                281 
  SERPINI1 MUTATED SERPINI1 WILD-TYPE 
                 8                281 
[1] "AQP8 MUTATION ANALYSIS"
[1] 3
  AQP8 MUTATED AQP8 WILD-TYPE 
            11            278 
  AQP8 MUTATED AQP8 WILD-TYPE 
            11            278 
[1] "ZCCHC6 MUTATION ANALYSIS"
[1] 3
  ZCCHC6 MUTATED ZCCHC6 WILD-TYPE 
              13              276 
  ZCCHC6 MUTATED ZCCHC6 WILD-TYPE 
              13              276 
[1] "ZFHX3 MUTATION ANALYSIS"
[1] 3
  ZFHX3 MUTATED ZFHX3 WILD-TYPE 
             38             251 
  ZFHX3 MUTATED ZFHX3 WILD-TYPE 
             38             251 
[1] "C19ORF40 MUTATION ANALYSIS"
[1] 3
  C19ORF40 MUTATED C19ORF40 WILD-TYPE 
                 6                283 
  C19ORF40 MUTATED C19ORF40 WILD-TYPE 
                 6                283 
[1] "SPG20 MUTATION ANALYSIS"
[1] 3
  SPG20 MUTATED SPG20 WILD-TYPE 
             21             268 
  SPG20 MUTATED SPG20 WILD-TYPE 
             21             268 
[1] "SREBF2 MUTATION ANALYSIS"
[1] 3
  SREBF2 MUTATED SREBF2 WILD-TYPE 
              10              279 
  SREBF2 MUTATED SREBF2 WILD-TYPE 
              10              279 
[1] "GPR161 MUTATION ANALYSIS"
[1] 3
  GPR161 MUTATED GPR161 WILD-TYPE 
              12              277 
  GPR161 MUTATED GPR161 WILD-TYPE 
              12              277 
[1] "CR1L MUTATION ANALYSIS"
[1] 3
  CR1L MUTATED CR1L WILD-TYPE 
            12            277 
  CR1L MUTATED CR1L WILD-TYPE 
            12            277 
[1] "RGL2 MUTATION ANALYSIS"
[1] 3
  RGL2 MUTATED RGL2 WILD-TYPE 
            12            277 
  RGL2 MUTATED RGL2 WILD-TYPE 
            12            277 
[1] "OGDH MUTATION ANALYSIS"
[1] 3
  OGDH MUTATED OGDH WILD-TYPE 
             9            280 
  OGDH MUTATED OGDH WILD-TYPE 
             9            280 
[1] "FHOD3 MUTATION ANALYSIS"
[1] 3
  FHOD3 MUTATED FHOD3 WILD-TYPE 
             26             263 
  FHOD3 MUTATED FHOD3 WILD-TYPE 
             26             263 
[1] "CABP5 MUTATION ANALYSIS"
[1] 3
  CABP5 MUTATED CABP5 WILD-TYPE 
              5             284 
  CABP5 MUTATED CABP5 WILD-TYPE 
              5             284 
[1] "TP53BP2 MUTATION ANALYSIS"
[1] 3
  TP53BP2 MUTATED TP53BP2 WILD-TYPE 
               14               275 
  TP53BP2 MUTATED TP53BP2 WILD-TYPE 
               14               275 
[1] "PHACTR2 MUTATION ANALYSIS"
[1] 3
  PHACTR2 MUTATED PHACTR2 WILD-TYPE 
               13               276 
  PHACTR2 MUTATED PHACTR2 WILD-TYPE 
               13               276 
[1] "FILIP1L MUTATION ANALYSIS"
[1] 3
  FILIP1L MUTATED FILIP1L WILD-TYPE 
               17               272 
  FILIP1L MUTATED FILIP1L WILD-TYPE 
               17               272 
[1] "STAT5B MUTATION ANALYSIS"
[1] 3
  STAT5B MUTATED STAT5B WILD-TYPE 
              12              277 
  STAT5B MUTATED STAT5B WILD-TYPE 
              12              277 
[1] "FASTKD1 MUTATION ANALYSIS"
[1] 3
  FASTKD1 MUTATED FASTKD1 WILD-TYPE 
               11               278 
  FASTKD1 MUTATED FASTKD1 WILD-TYPE 
               11               278 
[1] "ATP6V1C2 MUTATION ANALYSIS"
[1] 3
  ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE 
                12                277 
  ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE 
                12                277 
[1] "ZFC3H1 MUTATION ANALYSIS"
[1] 3
  ZFC3H1 MUTATED ZFC3H1 WILD-TYPE 
              15              274 
  ZFC3H1 MUTATED ZFC3H1 WILD-TYPE 
              15              274 
[1] "GCC2 MUTATION ANALYSIS"
[1] 3
  GCC2 MUTATED GCC2 WILD-TYPE 
            10            279 
  GCC2 MUTATED GCC2 WILD-TYPE 
            10            279 
[1] "STAT2 MUTATION ANALYSIS"
[1] 3
  STAT2 MUTATED STAT2 WILD-TYPE 
             10             279 
  STAT2 MUTATED STAT2 WILD-TYPE 
             10             279 
[1] "UBQLN2 MUTATION ANALYSIS"
[1] 3
  UBQLN2 MUTATED UBQLN2 WILD-TYPE 
               5              284 
  UBQLN2 MUTATED UBQLN2 WILD-TYPE 
               5              284 
[1] "INF2 MUTATION ANALYSIS"
[1] 3
  INF2 MUTATED INF2 WILD-TYPE 
            11            278 
  INF2 MUTATED INF2 WILD-TYPE 
            11            278 
[1] "ZKSCAN5 MUTATION ANALYSIS"
[1] 3
  ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE 
                9               280 
  ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE 
                9               280 
[1] "PAMR1 MUTATION ANALYSIS"
[1] 3
  PAMR1 MUTATED PAMR1 WILD-TYPE 
             17             272 
  PAMR1 MUTATED PAMR1 WILD-TYPE 
             17             272 
[1] "EPHX1 MUTATION ANALYSIS"
[1] 3
  EPHX1 MUTATED EPHX1 WILD-TYPE 
              9             280 
  EPHX1 MUTATED EPHX1 WILD-TYPE 
              9             280 
[1] "ARID1B MUTATION ANALYSIS"
[1] 3
  ARID1B MUTATED ARID1B WILD-TYPE 
              27              262 
  ARID1B MUTATED ARID1B WILD-TYPE 
              27              262 
[1] "ALDH3A1 MUTATION ANALYSIS"
[1] 3
  ALDH3A1 MUTATED ALDH3A1 WILD-TYPE 
               10               279 
  ALDH3A1 MUTATED ALDH3A1 WILD-TYPE 
               10               279 
[1] "FERMT2 MUTATION ANALYSIS"
[1] 3
  FERMT2 MUTATED FERMT2 WILD-TYPE 
               7              282 
  FERMT2 MUTATED FERMT2 WILD-TYPE 
               7              282 
[1] "C13ORF33 MUTATION ANALYSIS"
[1] 3
  C13ORF33 MUTATED C13ORF33 WILD-TYPE 
                 7                282 
  C13ORF33 MUTATED C13ORF33 WILD-TYPE 
                 7                282 
[1] "OTX2 MUTATION ANALYSIS"
[1] 3
  OTX2 MUTATED OTX2 WILD-TYPE 
             9            280 
  OTX2 MUTATED OTX2 WILD-TYPE 
             9            280 
[1] "KIAA0195 MUTATION ANALYSIS"
[1] 3
  KIAA0195 MUTATED KIAA0195 WILD-TYPE 
                16                273 
  KIAA0195 MUTATED KIAA0195 WILD-TYPE 
                16                273 
[1] "PLEKHA5 MUTATION ANALYSIS"
[1] 3
  PLEKHA5 MUTATED PLEKHA5 WILD-TYPE 
               15               274 
  PLEKHA5 MUTATED PLEKHA5 WILD-TYPE 
               15               274 
[1] "EIF4G3 MUTATION ANALYSIS"
[1] 3
  EIF4G3 MUTATED EIF4G3 WILD-TYPE 
              15              274 
  EIF4G3 MUTATED EIF4G3 WILD-TYPE 
              15              274 
[1] "RB1CC1 MUTATION ANALYSIS"
[1] 3
  RB1CC1 MUTATED RB1CC1 WILD-TYPE 
              10              279 
  RB1CC1 MUTATED RB1CC1 WILD-TYPE 
              10              279 
[1] "DYRK4 MUTATION ANALYSIS"
[1] 3
  DYRK4 MUTATED DYRK4 WILD-TYPE 
              9             280 
  DYRK4 MUTATED DYRK4 WILD-TYPE 
              9             280 
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              12              277 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              12              277 
[1] "TRIP10 MUTATION ANALYSIS"
[1] 3
  TRIP10 MUTATED TRIP10 WILD-TYPE 
               8              281 
  TRIP10 MUTATED TRIP10 WILD-TYPE 
               8              281 
[1] "CTNND1 MUTATION ANALYSIS"
[1] 3
  CTNND1 MUTATED CTNND1 WILD-TYPE 
              19              270 
  CTNND1 MUTATED CTNND1 WILD-TYPE 
              19              270 
[1] "ATP2A1 MUTATION ANALYSIS"
[1] 3
  ATP2A1 MUTATED ATP2A1 WILD-TYPE 
              15              274 
  ATP2A1 MUTATED ATP2A1 WILD-TYPE 
              15              274 
[1] "IFRD1 MUTATION ANALYSIS"
[1] 3
  IFRD1 MUTATED IFRD1 WILD-TYPE 
              8             281 
  IFRD1 MUTATED IFRD1 WILD-TYPE 
              8             281 
[1] "STAB1 MUTATION ANALYSIS"
[1] 3
  STAB1 MUTATED STAB1 WILD-TYPE 
             28             261 
  STAB1 MUTATED STAB1 WILD-TYPE 
             28             261 
[1] "FBXO21 MUTATION ANALYSIS"
[1] 3
  FBXO21 MUTATED FBXO21 WILD-TYPE 
              12              277 
  FBXO21 MUTATED FBXO21 WILD-TYPE 
              12              277 
[1] "GALNTL1 MUTATION ANALYSIS"
[1] 3
  GALNTL1 MUTATED GALNTL1 WILD-TYPE 
               10               279 
  GALNTL1 MUTATED GALNTL1 WILD-TYPE 
               10               279 
[1] "HOXD8 MUTATION ANALYSIS"
[1] 3
  HOXD8 MUTATED HOXD8 WILD-TYPE 
              7             282 
  HOXD8 MUTATED HOXD8 WILD-TYPE 
              7             282 
[1] "AXIN2 MUTATION ANALYSIS"
[1] 3
  AXIN2 MUTATED AXIN2 WILD-TYPE 
             15             274 
  AXIN2 MUTATED AXIN2 WILD-TYPE 
             15             274 
[1] "TBC1D22B MUTATION ANALYSIS"
[1] 3
  TBC1D22B MUTATED TBC1D22B WILD-TYPE 
                 7                282 
  TBC1D22B MUTATED TBC1D22B WILD-TYPE 
                 7                282 
[1] "CFI MUTATION ANALYSIS"
[1] 3
  CFI MUTATED CFI WILD-TYPE 
           12           277 
  CFI MUTATED CFI WILD-TYPE 
           12           277 
[1] "MFRP MUTATION ANALYSIS"
[1] 3
  MFRP MUTATED MFRP WILD-TYPE 
            12            277 
  MFRP MUTATED MFRP WILD-TYPE 
            12            277 
[1] "PALB2 MUTATION ANALYSIS"
[1] 3
  PALB2 MUTATED PALB2 WILD-TYPE 
              9             280 
  PALB2 MUTATED PALB2 WILD-TYPE 
              9             280 
[1] "FAM46D MUTATION ANALYSIS"
[1] 3
  FAM46D MUTATED FAM46D WILD-TYPE 
               9              280 
  FAM46D MUTATED FAM46D WILD-TYPE 
               9              280 
[1] "DSTN MUTATION ANALYSIS"
[1] 3
  DSTN MUTATED DSTN WILD-TYPE 
             5            284 
  DSTN MUTATED DSTN WILD-TYPE 
             5            284 
[1] "PHACTR4 MUTATION ANALYSIS"
[1] 3
  PHACTR4 MUTATED PHACTR4 WILD-TYPE 
                8               281 
  PHACTR4 MUTATED PHACTR4 WILD-TYPE 
                8               281 
[1] "ATXN2L MUTATION ANALYSIS"
[1] 3
  ATXN2L MUTATED ATXN2L WILD-TYPE 
              17              272 
  ATXN2L MUTATED ATXN2L WILD-TYPE 
              17              272 
[1] "SVIL MUTATION ANALYSIS"
[1] 3
  SVIL MUTATED SVIL WILD-TYPE 
            26            263 
  SVIL MUTATED SVIL WILD-TYPE 
            26            263 
[1] "WNK4 MUTATION ANALYSIS"
[1] 3
  WNK4 MUTATED WNK4 WILD-TYPE 
            21            268 
  WNK4 MUTATED WNK4 WILD-TYPE 
            21            268 
[1] "ACVR1B MUTATION ANALYSIS"
[1] 3
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              11              278 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              11              278 
[1] "C5ORF42 MUTATION ANALYSIS"
[1] 3
  C5ORF42 MUTATED C5ORF42 WILD-TYPE 
               27               262 
  C5ORF42 MUTATED C5ORF42 WILD-TYPE 
               27               262 
[1] "ITGA6 MUTATION ANALYSIS"
[1] 3
  ITGA6 MUTATED ITGA6 WILD-TYPE 
              6             283 
  ITGA6 MUTATED ITGA6 WILD-TYPE 
              6             283 
[1] "CDC25C MUTATION ANALYSIS"
[1] 3
  CDC25C MUTATED CDC25C WILD-TYPE 
              12              277 
  CDC25C MUTATED CDC25C WILD-TYPE 
              12              277 
[1] "FKBP9 MUTATION ANALYSIS"
[1] 3
  FKBP9 MUTATED FKBP9 WILD-TYPE 
              6             283 
  FKBP9 MUTATED FKBP9 WILD-TYPE 
              6             283 
[1] "BEND3 MUTATION ANALYSIS"
[1] 3
  BEND3 MUTATED BEND3 WILD-TYPE 
             12             277 
  BEND3 MUTATED BEND3 WILD-TYPE 
             12             277 
[1] "ABCA6 MUTATION ANALYSIS"
[1] 3
  ABCA6 MUTATED ABCA6 WILD-TYPE 
             13             276 
  ABCA6 MUTATED ABCA6 WILD-TYPE 
             13             276 
[1] "FOXN3 MUTATION ANALYSIS"
[1] 3
  FOXN3 MUTATED FOXN3 WILD-TYPE 
              8             281 
  FOXN3 MUTATED FOXN3 WILD-TYPE 
              8             281 
[1] "BAX MUTATION ANALYSIS"
[1] 3
  BAX MUTATED BAX WILD-TYPE 
            6           283 
  BAX MUTATED BAX WILD-TYPE 
            6           283 
[1] "IGFBP7 MUTATION ANALYSIS"
[1] 3
  IGFBP7 MUTATED IGFBP7 WILD-TYPE 
               4              285 
  IGFBP7 MUTATED IGFBP7 WILD-TYPE 
               4              285 
[1] "FAM113B MUTATION ANALYSIS"
[1] 3
  FAM113B MUTATED FAM113B WILD-TYPE 
               13               276 
  FAM113B MUTATED FAM113B WILD-TYPE 
               13               276 
[1] "TP53BP1 MUTATION ANALYSIS"
[1] 3
  TP53BP1 MUTATED TP53BP1 WILD-TYPE 
               16               273 
  TP53BP1 MUTATED TP53BP1 WILD-TYPE 
               16               273 
[1] "C1R MUTATION ANALYSIS"
[1] 3
  C1R MUTATED C1R WILD-TYPE 
            5           284 
  C1R MUTATED C1R WILD-TYPE 
            5           284 
[1] "WDR7 MUTATION ANALYSIS"
[1] 3
  WDR7 MUTATED WDR7 WILD-TYPE 
            17            272 
  WDR7 MUTATED WDR7 WILD-TYPE 
            17            272 
[1] "ERBB3 MUTATION ANALYSIS"
[1] 3
  ERBB3 MUTATED ERBB3 WILD-TYPE 
             31             258 
  ERBB3 MUTATED ERBB3 WILD-TYPE 
             31             258 
[1] "CASP8 MUTATION ANALYSIS"
[1] 3
  CASP8 MUTATED CASP8 WILD-TYPE 
             18             271 
  CASP8 MUTATED CASP8 WILD-TYPE 
             18             271 
[1] "PRKAB1 MUTATION ANALYSIS"
[1] 3
  PRKAB1 MUTATED PRKAB1 WILD-TYPE 
               6              283 
  PRKAB1 MUTATED PRKAB1 WILD-TYPE 
               6              283 
[1] "PIGB MUTATION ANALYSIS"
[1] 3
  PIGB MUTATED PIGB WILD-TYPE 
            10            279 
  PIGB MUTATED PIGB WILD-TYPE 
            10            279 
[1] "NAA25 MUTATION ANALYSIS"
[1] 3
  NAA25 MUTATED NAA25 WILD-TYPE 
             14             275 
  NAA25 MUTATED NAA25 WILD-TYPE 
             14             275 
[1] "HNF1B MUTATION ANALYSIS"
[1] 3
  HNF1B MUTATED HNF1B WILD-TYPE 
              6             283 
  HNF1B MUTATED HNF1B WILD-TYPE 
              6             283 
[1] "GLIPR1L2 MUTATION ANALYSIS"
[1] 3
  GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE 
                10                279 
  GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE 
                10                279 
[1] "CR1 MUTATION ANALYSIS"
[1] 3
  CR1 MUTATED CR1 WILD-TYPE 
           25           264 
  CR1 MUTATED CR1 WILD-TYPE 
           25           264 
[1] "TENC1 MUTATION ANALYSIS"
[1] 3
  TENC1 MUTATED TENC1 WILD-TYPE 
             11             278 
  TENC1 MUTATED TENC1 WILD-TYPE 
             11             278 
[1] "ZIM3 MUTATION ANALYSIS"
[1] 3
  ZIM3 MUTATED ZIM3 WILD-TYPE 
            10            279 
  ZIM3 MUTATED ZIM3 WILD-TYPE 
            10            279 
[1] "RABGAP1 MUTATION ANALYSIS"
[1] 3
  RABGAP1 MUTATED RABGAP1 WILD-TYPE 
               20               269 
  RABGAP1 MUTATED RABGAP1 WILD-TYPE 
               20               269 
[1] "ALPK2 MUTATION ANALYSIS"
[1] 3
  ALPK2 MUTATED ALPK2 WILD-TYPE 
             19             270 
  ALPK2 MUTATED ALPK2 WILD-TYPE 
             19             270 
[1] "RAD51AP2 MUTATION ANALYSIS"
[1] 3
  RAD51AP2 MUTATED RAD51AP2 WILD-TYPE 
                12                277 
  RAD51AP2 MUTATED RAD51AP2 WILD-TYPE 
                12                277 
[1] "DNAJC1 MUTATION ANALYSIS"
[1] 3
  DNAJC1 MUTATED DNAJC1 WILD-TYPE 
              11              278 
  DNAJC1 MUTATED DNAJC1 WILD-TYPE 
              11              278 
[1] "SLC16A1 MUTATION ANALYSIS"
[1] 3
  SLC16A1 MUTATED SLC16A1 WILD-TYPE 
                7               282 
  SLC16A1 MUTATED SLC16A1 WILD-TYPE 
                7               282 
[1] "GPR160 MUTATION ANALYSIS"
[1] 3
  GPR160 MUTATED GPR160 WILD-TYPE 
               8              281 
  GPR160 MUTATED GPR160 WILD-TYPE 
               8              281 
[1] "DDX60 MUTATION ANALYSIS"
[1] 3
  DDX60 MUTATED DDX60 WILD-TYPE 
             10             279 
  DDX60 MUTATED DDX60 WILD-TYPE 
             10             279 
[1] "OSBP2 MUTATION ANALYSIS"
[1] 3
  OSBP2 MUTATED OSBP2 WILD-TYPE 
             11             278 
  OSBP2 MUTATED OSBP2 WILD-TYPE 
             11             278 
[1] "ERBB2 MUTATION ANALYSIS"
[1] 3
  ERBB2 MUTATED ERBB2 WILD-TYPE 
             14             275 
  ERBB2 MUTATED ERBB2 WILD-TYPE 
             14             275 
[1] "RSF1 MUTATION ANALYSIS"
[1] 3
  RSF1 MUTATED RSF1 WILD-TYPE 
            17            272 
  RSF1 MUTATED RSF1 WILD-TYPE 
            17            272 
[1] "KIAA1967 MUTATION ANALYSIS"
[1] 3
  KIAA1967 MUTATED KIAA1967 WILD-TYPE 
                17                272 
  KIAA1967 MUTATED KIAA1967 WILD-TYPE 
                17                272 
[1] "CNBD1 MUTATION ANALYSIS"
[1] 3
  CNBD1 MUTATED CNBD1 WILD-TYPE 
             13             276 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
             13             276 
[1] "DLGAP3 MUTATION ANALYSIS"
[1] 3
  DLGAP3 MUTATED DLGAP3 WILD-TYPE 
              16              273 
  DLGAP3 MUTATED DLGAP3 WILD-TYPE 
              16              273 
[1] "ABCB6 MUTATION ANALYSIS"
[1] 3
  ABCB6 MUTATED ABCB6 WILD-TYPE 
              8             281 
  ABCB6 MUTATED ABCB6 WILD-TYPE 
              8             281 
[1] "CYP27B1 MUTATION ANALYSIS"
[1] 3
  CYP27B1 MUTATED CYP27B1 WILD-TYPE 
                5               284 
  CYP27B1 MUTATED CYP27B1 WILD-TYPE 
                5               284 
[1] "RAB14 MUTATION ANALYSIS"
[1] 3
  RAB14 MUTATED RAB14 WILD-TYPE 
              8             281 
  RAB14 MUTATED RAB14 WILD-TYPE 
              8             281 
[1] "PODN MUTATION ANALYSIS"
[1] 3
  PODN MUTATED PODN WILD-TYPE 
            13            276 
  PODN MUTATED PODN WILD-TYPE 
            13            276 
[1] "WASF3 MUTATION ANALYSIS"
[1] 3
  WASF3 MUTATED WASF3 WILD-TYPE 
             11             278 
  WASF3 MUTATED WASF3 WILD-TYPE 
             11             278 
[1] "ZDHHC7 MUTATION ANALYSIS"
[1] 3
  ZDHHC7 MUTATED ZDHHC7 WILD-TYPE 
               6              283 
  ZDHHC7 MUTATED ZDHHC7 WILD-TYPE 
               6              283 
[1] "CASC3 MUTATION ANALYSIS"
[1] 3
  CASC3 MUTATED CASC3 WILD-TYPE 
              8             281 
  CASC3 MUTATED CASC3 WILD-TYPE 
              8             281 
[1] "ABLIM2 MUTATION ANALYSIS"
[1] 3
  ABLIM2 MUTATED ABLIM2 WILD-TYPE 
              11              278 
  ABLIM2 MUTATED ABLIM2 WILD-TYPE 
              11              278 
[1] "ATM MUTATION ANALYSIS"
[1] 3
  ATM MUTATED ATM WILD-TYPE 
           30           259 
  ATM MUTATED ATM WILD-TYPE 
           30           259 
[1] "ZC3H13 MUTATION ANALYSIS"
[1] 3
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              29              260 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              29              260 
[1] "PANK1 MUTATION ANALYSIS"
[1] 3
  PANK1 MUTATED PANK1 WILD-TYPE 
              8             281 
  PANK1 MUTATED PANK1 WILD-TYPE 
              8             281 
[1] "IRS4 MUTATION ANALYSIS"
[1] 3
  IRS4 MUTATED IRS4 WILD-TYPE 
            23            266 
  IRS4 MUTATED IRS4 WILD-TYPE 
            23            266 
[1] "KIAA1009 MUTATION ANALYSIS"
[1] 3
  KIAA1009 MUTATED KIAA1009 WILD-TYPE 
                15                274 
  KIAA1009 MUTATED KIAA1009 WILD-TYPE 
                15                274 
[1] "ADNP2 MUTATION ANALYSIS"
[1] 3
  ADNP2 MUTATED ADNP2 WILD-TYPE 
             18             271 
  ADNP2 MUTATED ADNP2 WILD-TYPE 
             18             271 
[1] "ZNF124 MUTATION ANALYSIS"
[1] 3
  ZNF124 MUTATED ZNF124 WILD-TYPE 
               9              280 
  ZNF124 MUTATED ZNF124 WILD-TYPE 
               9              280 
[1] "INTS12 MUTATION ANALYSIS"
[1] 3
  INTS12 MUTATED INTS12 WILD-TYPE 
               6              283 
  INTS12 MUTATED INTS12 WILD-TYPE 
               6              283 
[1] "DNAH5 MUTATION ANALYSIS"
[1] 3
  DNAH5 MUTATED DNAH5 WILD-TYPE 
             56             233 
  DNAH5 MUTATED DNAH5 WILD-TYPE 
             56             233 
[1] "CSF3R MUTATION ANALYSIS"
[1] 3
  CSF3R MUTATED CSF3R WILD-TYPE 
             12             277 
  CSF3R MUTATED CSF3R WILD-TYPE 
             12             277 
[1] "IDH2 MUTATION ANALYSIS"
[1] 3
  IDH2 MUTATED IDH2 WILD-TYPE 
             4            285 
  IDH2 MUTATED IDH2 WILD-TYPE 
             4            285 
[1] "PIGO MUTATION ANALYSIS"
[1] 3
  PIGO MUTATED PIGO WILD-TYPE 
            10            279 
  PIGO MUTATED PIGO WILD-TYPE 
            10            279 
[1] "MASTL MUTATION ANALYSIS"
[1] 3
  MASTL MUTATED MASTL WILD-TYPE 
             11             278 
  MASTL MUTATED MASTL WILD-TYPE 
             11             278 
[1] "RNF111 MUTATION ANALYSIS"
[1] 3
  RNF111 MUTATED RNF111 WILD-TYPE 
              10              279 
  RNF111 MUTATED RNF111 WILD-TYPE 
              10              279 
[1] "KIAA0406 MUTATION ANALYSIS"
[1] 3
  KIAA0406 MUTATED KIAA0406 WILD-TYPE 
                12                277 
  KIAA0406 MUTATED KIAA0406 WILD-TYPE 
                12                277 
[1] "SF3B2 MUTATION ANALYSIS"
[1] 3
  SF3B2 MUTATED SF3B2 WILD-TYPE 
             17             272 
  SF3B2 MUTATED SF3B2 WILD-TYPE 
             17             272 
[1] "SBNO1 MUTATION ANALYSIS"
[1] 3
  SBNO1 MUTATED SBNO1 WILD-TYPE 
             17             272 
  SBNO1 MUTATED SBNO1 WILD-TYPE 
             17             272 
[1] "POP1 MUTATION ANALYSIS"
[1] 3
  POP1 MUTATED POP1 WILD-TYPE 
            19            270 
  POP1 MUTATED POP1 WILD-TYPE 
            19            270 
[1] "FZD3 MUTATION ANALYSIS"
[1] 3
  FZD3 MUTATED FZD3 WILD-TYPE 
            10            279 
  FZD3 MUTATED FZD3 WILD-TYPE 
            10            279 
[1] "RING1 MUTATION ANALYSIS"
[1] 3
  RING1 MUTATED RING1 WILD-TYPE 
              8             281 
  RING1 MUTATED RING1 WILD-TYPE 
              8             281 
[1] "PIK3R3 MUTATION ANALYSIS"
[1] 3
  PIK3R3 MUTATED PIK3R3 WILD-TYPE 
               8              281 
  PIK3R3 MUTATED PIK3R3 WILD-TYPE 
               8              281 
[1] "PCGF3 MUTATION ANALYSIS"
[1] 3
  PCGF3 MUTATED PCGF3 WILD-TYPE 
              6             283 
  PCGF3 MUTATED PCGF3 WILD-TYPE 
              6             283 
[1] "ZNF608 MUTATION ANALYSIS"
[1] 3
  ZNF608 MUTATED ZNF608 WILD-TYPE 
              15              274 
  ZNF608 MUTATED ZNF608 WILD-TYPE 
              15              274 
[1] "SYNJ2 MUTATION ANALYSIS"
[1] 3
  SYNJ2 MUTATED SYNJ2 WILD-TYPE 
             17             272 
  SYNJ2 MUTATED SYNJ2 WILD-TYPE 
             17             272 
[1] "GATA3 MUTATION ANALYSIS"
[1] 3
  GATA3 MUTATED GATA3 WILD-TYPE 
             16             273 
  GATA3 MUTATED GATA3 WILD-TYPE 
             16             273 
[1] "NFE2L1 MUTATION ANALYSIS"
[1] 3
  NFE2L1 MUTATED NFE2L1 WILD-TYPE 
               9              280 
  NFE2L1 MUTATED NFE2L1 WILD-TYPE 
               9              280 
[1] "SERPINB12 MUTATION ANALYSIS"
[1] 3
  SERPINB12 MUTATED SERPINB12 WILD-TYPE 
                  7                 282 
  SERPINB12 MUTATED SERPINB12 WILD-TYPE 
                  7                 282 
[1] "GPR141 MUTATION ANALYSIS"
[1] 3
  GPR141 MUTATED GPR141 WILD-TYPE 
               9              280 
  GPR141 MUTATED GPR141 WILD-TYPE 
               9              280 
[1] "ART1 MUTATION ANALYSIS"
[1] 3
  ART1 MUTATED ART1 WILD-TYPE 
             7            282 
  ART1 MUTATED ART1 WILD-TYPE 
             7            282 
[1] "DAO MUTATION ANALYSIS"
[1] 3
  DAO MUTATED DAO WILD-TYPE 
           11           278 
  DAO MUTATED DAO WILD-TYPE 
           11           278 
[1] "HIVEP3 MUTATION ANALYSIS"
[1] 3
  HIVEP3 MUTATED HIVEP3 WILD-TYPE 
              27              262 
  HIVEP3 MUTATED HIVEP3 WILD-TYPE 
              27              262 
[1] "NEXN MUTATION ANALYSIS"
[1] 3
  NEXN MUTATED NEXN WILD-TYPE 
             8            281 
  NEXN MUTATED NEXN WILD-TYPE 
             8            281 
[1] "VEZF1 MUTATION ANALYSIS"
[1] 3
  VEZF1 MUTATED VEZF1 WILD-TYPE 
              5             284 
  VEZF1 MUTATED VEZF1 WILD-TYPE 
              5             284 
[1] "CETN3 MUTATION ANALYSIS"
[1] 3
  CETN3 MUTATED CETN3 WILD-TYPE 
              7             282 
  CETN3 MUTATED CETN3 WILD-TYPE 
              7             282 
[1] "SGOL2 MUTATION ANALYSIS"
[1] 3
  SGOL2 MUTATED SGOL2 WILD-TYPE 
             11             278 
  SGOL2 MUTATED SGOL2 WILD-TYPE 
             11             278 
[1] "CASD1 MUTATION ANALYSIS"
[1] 3
  CASD1 MUTATED CASD1 WILD-TYPE 
             11             278 
  CASD1 MUTATED CASD1 WILD-TYPE 
             11             278 
[1] "FAM116A MUTATION ANALYSIS"
[1] 3
  FAM116A MUTATED FAM116A WILD-TYPE 
                6               283 
  FAM116A MUTATED FAM116A WILD-TYPE 
                6               283 
[1] "TCHP MUTATION ANALYSIS"
[1] 3
  TCHP MUTATED TCHP WILD-TYPE 
            10            279 
  TCHP MUTATED TCHP WILD-TYPE 
            10            279 
[1] "IPO11 MUTATION ANALYSIS"
[1] 3
  IPO11 MUTATED IPO11 WILD-TYPE 
             12             277 
  IPO11 MUTATED IPO11 WILD-TYPE 
             12             277 
[1] "CLDN6 MUTATION ANALYSIS"
[1] 3
  CLDN6 MUTATED CLDN6 WILD-TYPE 
              7             282 
  CLDN6 MUTATED CLDN6 WILD-TYPE 
              7             282 
[1] "SOX7 MUTATION ANALYSIS"
[1] 3
  SOX7 MUTATED SOX7 WILD-TYPE 
            12            277 
  SOX7 MUTATED SOX7 WILD-TYPE 
            12            277 
[1] "C20ORF160 MUTATION ANALYSIS"
[1] 3
  C20ORF160 MUTATED C20ORF160 WILD-TYPE 
                  8                 281 
  C20ORF160 MUTATED C20ORF160 WILD-TYPE 
                  8                 281 
[1] "ZNF23 MUTATION ANALYSIS"
[1] 3
  ZNF23 MUTATED ZNF23 WILD-TYPE 
              3             286 
  ZNF23 MUTATED ZNF23 WILD-TYPE 
              3             286 
[1] "EFHA1 MUTATION ANALYSIS"
[1] 3
  EFHA1 MUTATED EFHA1 WILD-TYPE 
              9             280 
  EFHA1 MUTATED EFHA1 WILD-TYPE 
              9             280 
[1] "PAPD4 MUTATION ANALYSIS"
[1] 3
  PAPD4 MUTATED PAPD4 WILD-TYPE 
              8             281 
  PAPD4 MUTATED PAPD4 WILD-TYPE 
              8             281 
[1] "VPRBP MUTATION ANALYSIS"
[1] 3
  VPRBP MUTATED VPRBP WILD-TYPE 
              9             280 
  VPRBP MUTATED VPRBP WILD-TYPE 
              9             280 
[1] "PLA2G1B MUTATION ANALYSIS"
[1] 3
  PLA2G1B MUTATED PLA2G1B WILD-TYPE 
                4               285 
  PLA2G1B MUTATED PLA2G1B WILD-TYPE 
                4               285 
[1] "BTBD11 MUTATION ANALYSIS"
[1] 3
  BTBD11 MUTATED BTBD11 WILD-TYPE 
              20              269 
  BTBD11 MUTATED BTBD11 WILD-TYPE 
              20              269 
[1] "TRAM1L1 MUTATION ANALYSIS"
[1] 3
  TRAM1L1 MUTATED TRAM1L1 WILD-TYPE 
               13               276 
  TRAM1L1 MUTATED TRAM1L1 WILD-TYPE 
               13               276 
[1] "WNT1 MUTATION ANALYSIS"
[1] 3
  WNT1 MUTATED WNT1 WILD-TYPE 
             8            281 
  WNT1 MUTATED WNT1 WILD-TYPE 
             8            281 
[1] "SCLT1 MUTATION ANALYSIS"
[1] 3
  SCLT1 MUTATED SCLT1 WILD-TYPE 
             14             275 
  SCLT1 MUTATED SCLT1 WILD-TYPE 
             14             275 
[1] "USP15 MUTATION ANALYSIS"
[1] 3
  USP15 MUTATED USP15 WILD-TYPE 
              6             283 
  USP15 MUTATED USP15 WILD-TYPE 
              6             283 
[1] "NCAPH MUTATION ANALYSIS"
[1] 3
  NCAPH MUTATED NCAPH WILD-TYPE 
             10             279 
  NCAPH MUTATED NCAPH WILD-TYPE 
             10             279 
[1] "CCDC108 MUTATION ANALYSIS"
[1] 3
  CCDC108 MUTATED CCDC108 WILD-TYPE 
               25               264 
  CCDC108 MUTATED CCDC108 WILD-TYPE 
               25               264 
[1] "FBXO48 MUTATION ANALYSIS"
[1] 3
  FBXO48 MUTATED FBXO48 WILD-TYPE 
               4              285 
  FBXO48 MUTATED FBXO48 WILD-TYPE 
               4              285 
[1] "CROT MUTATION ANALYSIS"
[1] 3
  CROT MUTATED CROT WILD-TYPE 
            11            278 
  CROT MUTATED CROT WILD-TYPE 
            11            278 
[1] "BRSK1 MUTATION ANALYSIS"
[1] 3
  BRSK1 MUTATED BRSK1 WILD-TYPE 
             12             277 
  BRSK1 MUTATED BRSK1 WILD-TYPE 
             12             277 
[1] "C1QA MUTATION ANALYSIS"
[1] 3
  C1QA MUTATED C1QA WILD-TYPE 
             5            284 
  C1QA MUTATED C1QA WILD-TYPE 
             5            284 
[1] "PRMT8 MUTATION ANALYSIS"
[1] 3
  PRMT8 MUTATED PRMT8 WILD-TYPE 
              8             281 
  PRMT8 MUTATED PRMT8 WILD-TYPE 
              8             281 
[1] "PLEKHO1 MUTATION ANALYSIS"
[1] 3
  PLEKHO1 MUTATED PLEKHO1 WILD-TYPE 
                7               282 
  PLEKHO1 MUTATED PLEKHO1 WILD-TYPE 
                7               282 
[1] "EOMES MUTATION ANALYSIS"
[1] 3
  EOMES MUTATED EOMES WILD-TYPE 
              8             281 
  EOMES MUTATED EOMES WILD-TYPE 
              8             281 
[1] "FYB MUTATION ANALYSIS"
[1] 3
  FYB MUTATED FYB WILD-TYPE 
           11           278 
  FYB MUTATED FYB WILD-TYPE 
           11           278 
[1] "SDAD1 MUTATION ANALYSIS"
[1] 3
  SDAD1 MUTATED SDAD1 WILD-TYPE 
              7             282 
  SDAD1 MUTATED SDAD1 WILD-TYPE 
              7             282 
[1] "IKBKE MUTATION ANALYSIS"
[1] 3
  IKBKE MUTATED IKBKE WILD-TYPE 
             12             277 
  IKBKE MUTATED IKBKE WILD-TYPE 
             12             277 
[1] "CADPS2 MUTATION ANALYSIS"
[1] 3
  CADPS2 MUTATED CADPS2 WILD-TYPE 
              11              278 
  CADPS2 MUTATED CADPS2 WILD-TYPE 
              11              278 
[1] "IL2RG MUTATION ANALYSIS"
[1] 3
  IL2RG MUTATED IL2RG WILD-TYPE 
              6             283 
  IL2RG MUTATED IL2RG WILD-TYPE 
              6             283 
[1] "TBL1XR1 MUTATION ANALYSIS"
[1] 3
  TBL1XR1 MUTATED TBL1XR1 WILD-TYPE 
                6               283 
  TBL1XR1 MUTATED TBL1XR1 WILD-TYPE 
                6               283 
[1] "ASPN MUTATION ANALYSIS"
[1] 3
  ASPN MUTATED ASPN WILD-TYPE 
             5            284 
  ASPN MUTATED ASPN WILD-TYPE 
             5            284 
[1] "GLT8D1 MUTATION ANALYSIS"
[1] 3
  GLT8D1 MUTATED GLT8D1 WILD-TYPE 
               8              281 
  GLT8D1 MUTATED GLT8D1 WILD-TYPE 
               8              281 
[1] "KDELR3 MUTATION ANALYSIS"
[1] 3
  KDELR3 MUTATED KDELR3 WILD-TYPE 
               3              286 
  KDELR3 MUTATED KDELR3 WILD-TYPE 
               3              286 
[1] "ZNF43 MUTATION ANALYSIS"
[1] 3
  ZNF43 MUTATED ZNF43 WILD-TYPE 
             23             266 
  ZNF43 MUTATED ZNF43 WILD-TYPE 
             23             266 
[1] "CTSA MUTATION ANALYSIS"
[1] 3
  CTSA MUTATED CTSA WILD-TYPE 
             4            285 
  CTSA MUTATED CTSA WILD-TYPE 
             4            285 
[1] "HIVEP1 MUTATION ANALYSIS"
[1] 3
  HIVEP1 MUTATED HIVEP1 WILD-TYPE 
              22              267 
  HIVEP1 MUTATED HIVEP1 WILD-TYPE 
              22              267 
[1] "OR7C1 MUTATION ANALYSIS"
[1] 3
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              6             283 
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              6             283 
[1] "MLL3 MUTATION ANALYSIS"
[1] 3
  MLL3 MUTATED MLL3 WILD-TYPE 
            42            247 
  MLL3 MUTATED MLL3 WILD-TYPE 
            42            247 
[1] "KBTBD6 MUTATION ANALYSIS"
[1] 3
  KBTBD6 MUTATED KBTBD6 WILD-TYPE 
              13              276 
  KBTBD6 MUTATED KBTBD6 WILD-TYPE 
              13              276 
[1] "EBF3 MUTATION ANALYSIS"
[1] 3
  EBF3 MUTATED EBF3 WILD-TYPE 
            12            277 
  EBF3 MUTATED EBF3 WILD-TYPE 
            12            277 
[1] "ELF3 MUTATION ANALYSIS"
[1] 3
  ELF3 MUTATED ELF3 WILD-TYPE 
            11            278 
  ELF3 MUTATED ELF3 WILD-TYPE 
            11            278 
[1] "RRS1 MUTATION ANALYSIS"
[1] 3
  RRS1 MUTATED RRS1 WILD-TYPE 
             7            282 
  RRS1 MUTATED RRS1 WILD-TYPE 
             7            282 
[1] "MYEOV MUTATION ANALYSIS"
[1] 3
  MYEOV MUTATED MYEOV WILD-TYPE 
              8             281 
  MYEOV MUTATED MYEOV WILD-TYPE 
              8             281 
[1] "SMARCB1 MUTATION ANALYSIS"
[1] 3
  SMARCB1 MUTATED SMARCB1 WILD-TYPE 
               11               278 
  SMARCB1 MUTATED SMARCB1 WILD-TYPE 
               11               278 
[1] "MLXIPL MUTATION ANALYSIS"
[1] 3
  MLXIPL MUTATED MLXIPL WILD-TYPE 
              14              275 
  MLXIPL MUTATED MLXIPL WILD-TYPE 
              14              275 
[1] "FAM193A MUTATION ANALYSIS"
[1] 3
  FAM193A MUTATED FAM193A WILD-TYPE 
               15               274 
  FAM193A MUTATED FAM193A WILD-TYPE 
               15               274 
[1] "ZNF626 MUTATION ANALYSIS"
[1] 3
  ZNF626 MUTATED ZNF626 WILD-TYPE 
              15              274 
  ZNF626 MUTATED ZNF626 WILD-TYPE 
              15              274 
[1] "BRWD1 MUTATION ANALYSIS"
[1] 3
  BRWD1 MUTATED BRWD1 WILD-TYPE 
             21             268 
  BRWD1 MUTATED BRWD1 WILD-TYPE 
             21             268 
[1] "TAS2R42 MUTATION ANALYSIS"
[1] 3
  TAS2R42 MUTATED TAS2R42 WILD-TYPE 
                4               285 
  TAS2R42 MUTATED TAS2R42 WILD-TYPE 
                4               285 
[1] "CDK12 MUTATION ANALYSIS"
[1] 3
  CDK12 MUTATED CDK12 WILD-TYPE 
             19             270 
  CDK12 MUTATED CDK12 WILD-TYPE 
             19             270 
[1] "CPB2 MUTATION ANALYSIS"
[1] 3
  CPB2 MUTATED CPB2 WILD-TYPE 
             9            280 
  CPB2 MUTATED CPB2 WILD-TYPE 
             9            280 
[1] "RCOR3 MUTATION ANALYSIS"
[1] 3
  RCOR3 MUTATED RCOR3 WILD-TYPE 
             12             277 
  RCOR3 MUTATED RCOR3 WILD-TYPE 
             12             277 
[1] "TAF1L MUTATION ANALYSIS"
[1] 3
  TAF1L MUTATED TAF1L WILD-TYPE 
             22             267 
  TAF1L MUTATED TAF1L WILD-TYPE 
             22             267 
[1] "GPR124 MUTATION ANALYSIS"
[1] 3
  GPR124 MUTATED GPR124 WILD-TYPE 
              13              276 
  GPR124 MUTATED GPR124 WILD-TYPE 
              13              276 
[1] "COL12A1 MUTATION ANALYSIS"
[1] 3
  COL12A1 MUTATED COL12A1 WILD-TYPE 
               46               243 
  COL12A1 MUTATED COL12A1 WILD-TYPE 
               46               243 
[1] "OR2J3 MUTATION ANALYSIS"
[1] 3
  OR2J3 MUTATED OR2J3 WILD-TYPE 
              6             283 
  OR2J3 MUTATED OR2J3 WILD-TYPE 
              6             283 
[1] "ENTPD2 MUTATION ANALYSIS"
[1] 3
  ENTPD2 MUTATED ENTPD2 WILD-TYPE 
               4              285 
  ENTPD2 MUTATED ENTPD2 WILD-TYPE 
               4              285 
[1] "ITPR2 MUTATION ANALYSIS"
[1] 3
  ITPR2 MUTATED ITPR2 WILD-TYPE 
             25             264 
  ITPR2 MUTATED ITPR2 WILD-TYPE 
             25             264 
[1] "SOAT1 MUTATION ANALYSIS"
[1] 3
  SOAT1 MUTATED SOAT1 WILD-TYPE 
              6             283 
  SOAT1 MUTATED SOAT1 WILD-TYPE 
              6             283 
[1] "GPR82 MUTATION ANALYSIS"
[1] 3
  GPR82 MUTATED GPR82 WILD-TYPE 
              9             280 
  GPR82 MUTATED GPR82 WILD-TYPE 
              9             280 
[1] "ACTL6A MUTATION ANALYSIS"
[1] 3
  ACTL6A MUTATED ACTL6A WILD-TYPE 
               8              281 
  ACTL6A MUTATED ACTL6A WILD-TYPE 
               8              281 
[1] "CTSD MUTATION ANALYSIS"
[1] 3
  CTSD MUTATED CTSD WILD-TYPE 
             7            282 
  CTSD MUTATED CTSD WILD-TYPE 
             7            282 
[1] "GON4L MUTATION ANALYSIS"
[1] 3
  GON4L MUTATED GON4L WILD-TYPE 
             10             279 
  GON4L MUTATED GON4L WILD-TYPE 
             10             279 
[1] "KLC2 MUTATION ANALYSIS"
[1] 3
  KLC2 MUTATED KLC2 WILD-TYPE 
            11            278 
  KLC2 MUTATED KLC2 WILD-TYPE 
            11            278 
[1] "GNPNAT1 MUTATION ANALYSIS"
[1] 3
  GNPNAT1 MUTATED GNPNAT1 WILD-TYPE 
                4               285 
  GNPNAT1 MUTATED GNPNAT1 WILD-TYPE 
                4               285 
[1] "RBM6 MUTATION ANALYSIS"
[1] 3
  RBM6 MUTATED RBM6 WILD-TYPE 
            20            269 
  RBM6 MUTATED RBM6 WILD-TYPE 
            20            269 
[1] "SLC26A7 MUTATION ANALYSIS"
[1] 3
  SLC26A7 MUTATED SLC26A7 WILD-TYPE 
               14               275 
  SLC26A7 MUTATED SLC26A7 WILD-TYPE 
               14               275 
[1] "OR5M3 MUTATION ANALYSIS"
[1] 3
  OR5M3 MUTATED OR5M3 WILD-TYPE 
             15             274 
  OR5M3 MUTATED OR5M3 WILD-TYPE 
             15             274 
[1] "MSL3 MUTATION ANALYSIS"
[1] 3
  MSL3 MUTATED MSL3 WILD-TYPE 
            10            279 
  MSL3 MUTATED MSL3 WILD-TYPE 
            10            279 
[1] "CTNNA1 MUTATION ANALYSIS"
[1] 3
  CTNNA1 MUTATED CTNNA1 WILD-TYPE 
              13              276 
  CTNNA1 MUTATED CTNNA1 WILD-TYPE 
              13              276 
[1] "MMP3 MUTATION ANALYSIS"
[1] 3
  MMP3 MUTATED MMP3 WILD-TYPE 
             8            281 
  MMP3 MUTATED MMP3 WILD-TYPE 
             8            281 
[1] "ALDH2 MUTATION ANALYSIS"
[1] 3
  ALDH2 MUTATED ALDH2 WILD-TYPE 
              9             280 
  ALDH2 MUTATED ALDH2 WILD-TYPE 
              9             280 
[1] "SOS2 MUTATION ANALYSIS"
[1] 3
  SOS2 MUTATED SOS2 WILD-TYPE 
            19            270 
  SOS2 MUTATED SOS2 WILD-TYPE 
            19            270 
[1] "OR4K5 MUTATION ANALYSIS"
[1] 3
  OR4K5 MUTATED OR4K5 WILD-TYPE 
             12             277 
  OR4K5 MUTATED OR4K5 WILD-TYPE 
             12             277 
[1] "PLXNA2 MUTATION ANALYSIS"
[1] 3
  PLXNA2 MUTATED PLXNA2 WILD-TYPE 
              23              266 
  PLXNA2 MUTATED PLXNA2 WILD-TYPE 
              23              266 
[1] "C15ORF52 MUTATION ANALYSIS"
[1] 3
  C15ORF52 MUTATED C15ORF52 WILD-TYPE 
                 8                281 
  C15ORF52 MUTATED C15ORF52 WILD-TYPE 
                 8                281 
[1] "CBLL1 MUTATION ANALYSIS"
[1] 3
  CBLL1 MUTATED CBLL1 WILD-TYPE 
              6             283 
  CBLL1 MUTATED CBLL1 WILD-TYPE 
              6             283 
[1] "KIAA1804 MUTATION ANALYSIS"
[1] 3
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
                 8                281 
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
                 8                281 
[1] "PGBD1 MUTATION ANALYSIS"
[1] 3
  PGBD1 MUTATED PGBD1 WILD-TYPE 
             12             277 
  PGBD1 MUTATED PGBD1 WILD-TYPE 
             12             277 
[1] "ADAMTSL4 MUTATION ANALYSIS"
[1] 3
  ADAMTSL4 MUTATED ADAMTSL4 WILD-TYPE 
                15                274 
  ADAMTSL4 MUTATED ADAMTSL4 WILD-TYPE 
                15                274 
[1] "HTR1E MUTATION ANALYSIS"
[1] 3
  HTR1E MUTATED HTR1E WILD-TYPE 
              9             280 
  HTR1E MUTATED HTR1E WILD-TYPE 
              9             280 
[1] "UGP2 MUTATION ANALYSIS"
[1] 3
  UGP2 MUTATED UGP2 WILD-TYPE 
             7            282 
  UGP2 MUTATED UGP2 WILD-TYPE 
             7            282 
[1] "PFKP MUTATION ANALYSIS"
[1] 3
  PFKP MUTATED PFKP WILD-TYPE 
            12            277 
  PFKP MUTATED PFKP WILD-TYPE 
            12            277 
[1] "EDNRB MUTATION ANALYSIS"
[1] 3
  EDNRB MUTATED EDNRB WILD-TYPE 
             25             264 
  EDNRB MUTATED EDNRB WILD-TYPE 
             25             264 
[1] "ISG20L2 MUTATION ANALYSIS"
[1] 3
  ISG20L2 MUTATED ISG20L2 WILD-TYPE 
                7               282 
  ISG20L2 MUTATED ISG20L2 WILD-TYPE 
                7               282 
[1] "MAMSTR MUTATION ANALYSIS"
[1] 3
  MAMSTR MUTATED MAMSTR WILD-TYPE 
               4              285 
  MAMSTR MUTATED MAMSTR WILD-TYPE 
               4              285 
[1] "UHRF1BP1 MUTATION ANALYSIS"
[1] 3
  UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE 
                15                274 
  UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE 
                15                274 
[1] "FAM70B MUTATION ANALYSIS"
[1] 3
  FAM70B MUTATED FAM70B WILD-TYPE 
              13              276 
  FAM70B MUTATED FAM70B WILD-TYPE 
              13              276 
[1] "SEC24C MUTATION ANALYSIS"
[1] 3
  SEC24C MUTATED SEC24C WILD-TYPE 
              10              279 
  SEC24C MUTATED SEC24C WILD-TYPE 
              10              279 
[1] "CEP57 MUTATION ANALYSIS"
[1] 3
  CEP57 MUTATED CEP57 WILD-TYPE 
              7             282 
  CEP57 MUTATED CEP57 WILD-TYPE 
              7             282 
[1] "MAP7D3 MUTATION ANALYSIS"
[1] 3
  MAP7D3 MUTATED MAP7D3 WILD-TYPE 
              16              273 
  MAP7D3 MUTATED MAP7D3 WILD-TYPE 
              16              273 
[1] "CCDC148 MUTATION ANALYSIS"
[1] 3
  CCDC148 MUTATED CCDC148 WILD-TYPE 
                5               284 
  CCDC148 MUTATED CCDC148 WILD-TYPE 
                5               284 
[1] "HAUS6 MUTATION ANALYSIS"
[1] 3
  HAUS6 MUTATED HAUS6 WILD-TYPE 
             11             278 
  HAUS6 MUTATED HAUS6 WILD-TYPE 
             11             278 
[1] "TMEM55A MUTATION ANALYSIS"
[1] 3
  TMEM55A MUTATED TMEM55A WILD-TYPE 
                3               286 
  TMEM55A MUTATED TMEM55A WILD-TYPE 
                3               286 
[1] "GNAZ MUTATION ANALYSIS"
[1] 3
  GNAZ MUTATED GNAZ WILD-TYPE 
            15            274 
  GNAZ MUTATED GNAZ WILD-TYPE 
            15            274 
[1] "YBX2 MUTATION ANALYSIS"
[1] 3
  YBX2 MUTATED YBX2 WILD-TYPE 
             4            285 
  YBX2 MUTATED YBX2 WILD-TYPE 
             4            285 
[1] "C12ORF51 MUTATION ANALYSIS"
[1] 3
  C12ORF51 MUTATED C12ORF51 WILD-TYPE 
                30                259 
  C12ORF51 MUTATED C12ORF51 WILD-TYPE 
                30                259 
[1] "TACC2 MUTATION ANALYSIS"
[1] 3
  TACC2 MUTATED TACC2 WILD-TYPE 
             30             259 
  TACC2 MUTATED TACC2 WILD-TYPE 
             30             259 
[1] "PIAS1 MUTATION ANALYSIS"
[1] 3
  PIAS1 MUTATED PIAS1 WILD-TYPE 
             10             279 
  PIAS1 MUTATED PIAS1 WILD-TYPE 
             10             279 
[1] "NUFIP2 MUTATION ANALYSIS"
[1] 3
  NUFIP2 MUTATED NUFIP2 WILD-TYPE 
               7              282 
  NUFIP2 MUTATED NUFIP2 WILD-TYPE 
               7              282 
[1] "RUSC2 MUTATION ANALYSIS"
[1] 3
  RUSC2 MUTATED RUSC2 WILD-TYPE 
             19             270 
  RUSC2 MUTATED RUSC2 WILD-TYPE 
             19             270 
[1] "EGR1 MUTATION ANALYSIS"
[1] 3
  EGR1 MUTATED EGR1 WILD-TYPE 
            10            279 
  EGR1 MUTATED EGR1 WILD-TYPE 
            10            279 
[1] "TAF6 MUTATION ANALYSIS"
[1] 3
  TAF6 MUTATED TAF6 WILD-TYPE 
            12            277 
  TAF6 MUTATED TAF6 WILD-TYPE 
            12            277 
[1] "C11ORF9 MUTATION ANALYSIS"
[1] 3
  C11ORF9 MUTATED C11ORF9 WILD-TYPE 
                8               281 
  C11ORF9 MUTATED C11ORF9 WILD-TYPE 
                8               281 
[1] "KCNH4 MUTATION ANALYSIS"
[1] 3
  KCNH4 MUTATED KCNH4 WILD-TYPE 
              7             282 
  KCNH4 MUTATED KCNH4 WILD-TYPE 
              7             282 
[1] "TPTE2 MUTATION ANALYSIS"
[1] 3
  TPTE2 MUTATED TPTE2 WILD-TYPE 
             10             279 
  TPTE2 MUTATED TPTE2 WILD-TYPE 
             10             279 
[1] "IGF2BP3 MUTATION ANALYSIS"
[1] 3
  IGF2BP3 MUTATED IGF2BP3 WILD-TYPE 
                5               284 
  IGF2BP3 MUTATED IGF2BP3 WILD-TYPE 
                5               284 
[1] "ALG10 MUTATION ANALYSIS"
[1] 3
  ALG10 MUTATED ALG10 WILD-TYPE 
             11             278 
  ALG10 MUTATED ALG10 WILD-TYPE 
             11             278 
[1] "PLAG1 MUTATION ANALYSIS"
[1] 3
  PLAG1 MUTATED PLAG1 WILD-TYPE 
             11             278 
  PLAG1 MUTATED PLAG1 WILD-TYPE 
             11             278 
[1] "ARFGEF1 MUTATION ANALYSIS"
[1] 3
  ARFGEF1 MUTATED ARFGEF1 WILD-TYPE 
               24               265 
  ARFGEF1 MUTATED ARFGEF1 WILD-TYPE 
               24               265 
[1] "SLC12A7 MUTATION ANALYSIS"
[1] 3
  SLC12A7 MUTATED SLC12A7 WILD-TYPE 
               18               271 
  SLC12A7 MUTATED SLC12A7 WILD-TYPE 
               18               271 
[1] "TRUB1 MUTATION ANALYSIS"
[1] 3
  TRUB1 MUTATED TRUB1 WILD-TYPE 
              9             280 
  TRUB1 MUTATED TRUB1 WILD-TYPE 
              9             280 
[1] "SRCIN1 MUTATION ANALYSIS"
[1] 3
  SRCIN1 MUTATED SRCIN1 WILD-TYPE 
              13              276 
  SRCIN1 MUTATED SRCIN1 WILD-TYPE 
              13              276 
[1] "CA2 MUTATION ANALYSIS"
[1] 3
  CA2 MUTATED CA2 WILD-TYPE 
            5           284 
  CA2 MUTATED CA2 WILD-TYPE 
            5           284 
[1] "CDH16 MUTATION ANALYSIS"
[1] 3
  CDH16 MUTATED CDH16 WILD-TYPE 
             12             277 
  CDH16 MUTATED CDH16 WILD-TYPE 
             12             277 
[1] "ANKRD23 MUTATION ANALYSIS"
[1] 3
  ANKRD23 MUTATED ANKRD23 WILD-TYPE 
                5               284 
  ANKRD23 MUTATED ANKRD23 WILD-TYPE 
                5               284 
[1] "HDLBP MUTATION ANALYSIS"
[1] 3
  HDLBP MUTATED HDLBP WILD-TYPE 
             24             265 
  HDLBP MUTATED HDLBP WILD-TYPE 
             24             265 
[1] "HEXDC MUTATION ANALYSIS"
[1] 3
  HEXDC MUTATED HEXDC WILD-TYPE 
              5             284 
  HEXDC MUTATED HEXDC WILD-TYPE 
              5             284 
[1] "GRK4 MUTATION ANALYSIS"
[1] 3
  GRK4 MUTATED GRK4 WILD-TYPE 
             5            284 
  GRK4 MUTATED GRK4 WILD-TYPE 
             5            284 
[1] "MYOCD MUTATION ANALYSIS"
[1] 3
  MYOCD MUTATED MYOCD WILD-TYPE 
             13             276 
  MYOCD MUTATED MYOCD WILD-TYPE 
             13             276 
[1] "WHSC1L1 MUTATION ANALYSIS"
[1] 3
  WHSC1L1 MUTATED WHSC1L1 WILD-TYPE 
               16               273 
  WHSC1L1 MUTATED WHSC1L1 WILD-TYPE 
               16               273 
[1] "STX2 MUTATION ANALYSIS"
[1] 3
  STX2 MUTATED STX2 WILD-TYPE 
             6            283 
  STX2 MUTATED STX2 WILD-TYPE 
             6            283 
[1] "MGST2 MUTATION ANALYSIS"
[1] 3
  MGST2 MUTATED MGST2 WILD-TYPE 
              3             286 
  MGST2 MUTATED MGST2 WILD-TYPE 
              3             286 
[1] "MTIF2 MUTATION ANALYSIS"
[1] 3
  MTIF2 MUTATED MTIF2 WILD-TYPE 
             14             275 
  MTIF2 MUTATED MTIF2 WILD-TYPE 
             14             275 
[1] "TMEM41B MUTATION ANALYSIS"
[1] 3
  TMEM41B MUTATED TMEM41B WILD-TYPE 
                4               285 
  TMEM41B MUTATED TMEM41B WILD-TYPE 
                4               285 
[1] "ARHGEF5 MUTATION ANALYSIS"
[1] 3
  ARHGEF5 MUTATED ARHGEF5 WILD-TYPE 
                5               284 
  ARHGEF5 MUTATED ARHGEF5 WILD-TYPE 
                5               284 
[1] "BEST3 MUTATION ANALYSIS"
[1] 3
  BEST3 MUTATED BEST3 WILD-TYPE 
             10             279 
  BEST3 MUTATED BEST3 WILD-TYPE 
             10             279 
[1] "BMPR1B MUTATION ANALYSIS"
[1] 3
  BMPR1B MUTATED BMPR1B WILD-TYPE 
               7              282 
  BMPR1B MUTATED BMPR1B WILD-TYPE 
               7              282 
[1] "PKN2 MUTATION ANALYSIS"
[1] 3
  PKN2 MUTATED PKN2 WILD-TYPE 
            10            279 
  PKN2 MUTATED PKN2 WILD-TYPE 
            10            279 
[1] "KIRREL2 MUTATION ANALYSIS"
[1] 3
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
               12               277 
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
               12               277 
[1] "ANKRD40 MUTATION ANALYSIS"
[1] 3
  ANKRD40 MUTATED ANKRD40 WILD-TYPE 
                5               284 
  ANKRD40 MUTATED ANKRD40 WILD-TYPE 
                5               284 
[1] "CHST15 MUTATION ANALYSIS"
[1] 3
  CHST15 MUTATED CHST15 WILD-TYPE 
              13              276 
  CHST15 MUTATED CHST15 WILD-TYPE 
              13              276 
[1] "YIF1A MUTATION ANALYSIS"
[1] 3
  YIF1A MUTATED YIF1A WILD-TYPE 
              3             286 
  YIF1A MUTATED YIF1A WILD-TYPE 
              3             286 
[1] "OLFML3 MUTATION ANALYSIS"
[1] 3
  OLFML3 MUTATED OLFML3 WILD-TYPE 
               4              285 
  OLFML3 MUTATED OLFML3 WILD-TYPE 
               4              285 
[1] "SH3KBP1 MUTATION ANALYSIS"
[1] 3
  SH3KBP1 MUTATED SH3KBP1 WILD-TYPE 
               13               276 
  SH3KBP1 MUTATED SH3KBP1 WILD-TYPE 
               13               276 
[1] "SPHK2 MUTATION ANALYSIS"
[1] 3
  SPHK2 MUTATED SPHK2 WILD-TYPE 
              3             286 
  SPHK2 MUTATED SPHK2 WILD-TYPE 
              3             286 
[1] "TMEM63A MUTATION ANALYSIS"
[1] 3
  TMEM63A MUTATED TMEM63A WILD-TYPE 
               11               278 
  TMEM63A MUTATED TMEM63A WILD-TYPE 
               11               278 
[1] "NID2 MUTATION ANALYSIS"
[1] 3
  NID2 MUTATED NID2 WILD-TYPE 
            18            271 
  NID2 MUTATED NID2 WILD-TYPE 
            18            271 
[1] "FOXQ1 MUTATION ANALYSIS"
[1] 3
  FOXQ1 MUTATED FOXQ1 WILD-TYPE 
              3             286 
  FOXQ1 MUTATED FOXQ1 WILD-TYPE 
              3             286 
[1] "SUCLG2 MUTATION ANALYSIS"
[1] 3
  SUCLG2 MUTATED SUCLG2 WILD-TYPE 
               5              284 
  SUCLG2 MUTATED SUCLG2 WILD-TYPE 
               5              284 
[1] "MOCS2 MUTATION ANALYSIS"
[1] 3
  MOCS2 MUTATED MOCS2 WILD-TYPE 
              4             285 
  MOCS2 MUTATED MOCS2 WILD-TYPE 
              4             285 
[1] "C7ORF58 MUTATION ANALYSIS"
[1] 3
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
               15               274 
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
               15               274 
[1] "B3GNT5 MUTATION ANALYSIS"
[1] 3
  B3GNT5 MUTATED B3GNT5 WILD-TYPE 
              10              279 
  B3GNT5 MUTATED B3GNT5 WILD-TYPE 
              10              279 
[1] "CAMTA2 MUTATION ANALYSIS"
[1] 3
  CAMTA2 MUTATED CAMTA2 WILD-TYPE 
              16              273 
  CAMTA2 MUTATED CAMTA2 WILD-TYPE 
              16              273 
[1] "PLA2G15 MUTATION ANALYSIS"
[1] 3
  PLA2G15 MUTATED PLA2G15 WILD-TYPE 
                9               280 
  PLA2G15 MUTATED PLA2G15 WILD-TYPE 
                9               280 
[1] "PHKB MUTATION ANALYSIS"
[1] 3
  PHKB MUTATED PHKB WILD-TYPE 
             6            283 
  PHKB MUTATED PHKB WILD-TYPE 
             6            283 
[1] "CEP120 MUTATION ANALYSIS"
[1] 3
  CEP120 MUTATED CEP120 WILD-TYPE 
              10              279 
  CEP120 MUTATED CEP120 WILD-TYPE 
              10              279 
[1] "SERPINB8 MUTATION ANALYSIS"
[1] 3
  SERPINB8 MUTATED SERPINB8 WILD-TYPE 
                 8                281 
  SERPINB8 MUTATED SERPINB8 WILD-TYPE 
                 8                281 
[1] "EXO1 MUTATION ANALYSIS"
[1] 3
  EXO1 MUTATED EXO1 WILD-TYPE 
            16            273 
  EXO1 MUTATED EXO1 WILD-TYPE 
            16            273 
[1] "WDR59 MUTATION ANALYSIS"
[1] 3
  WDR59 MUTATED WDR59 WILD-TYPE 
             11             278 
  WDR59 MUTATED WDR59 WILD-TYPE 
             11             278 
[1] "UNC50 MUTATION ANALYSIS"
[1] 3
  UNC50 MUTATED UNC50 WILD-TYPE 
              3             286 
  UNC50 MUTATED UNC50 WILD-TYPE 
              3             286 
[1] "SOHLH2 MUTATION ANALYSIS"
[1] 3
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
              14              275 
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
              14              275 
[1] "SGK3 MUTATION ANALYSIS"
[1] 3
  SGK3 MUTATED SGK3 WILD-TYPE 
             5            284 
  SGK3 MUTATED SGK3 WILD-TYPE 
             5            284 
[1] "SLC25A17 MUTATION ANALYSIS"
[1] 3
  SLC25A17 MUTATED SLC25A17 WILD-TYPE 
                 4                285 
  SLC25A17 MUTATED SLC25A17 WILD-TYPE 
                 4                285 
[1] "MKL1 MUTATION ANALYSIS"
[1] 3
  MKL1 MUTATED MKL1 WILD-TYPE 
            13            276 
  MKL1 MUTATED MKL1 WILD-TYPE 
            13            276 
[1] "ACP1 MUTATION ANALYSIS"
[1] 3
  ACP1 MUTATED ACP1 WILD-TYPE 
             5            284 
  ACP1 MUTATED ACP1 WILD-TYPE 
             5            284 
[1] "KIAA1217 MUTATION ANALYSIS"
[1] 3
  KIAA1217 MUTATED KIAA1217 WILD-TYPE 
                19                270 
  KIAA1217 MUTATED KIAA1217 WILD-TYPE 
                19                270 
[1] "YLPM1 MUTATION ANALYSIS"
[1] 3
  YLPM1 MUTATED YLPM1 WILD-TYPE 
             18             271 
  YLPM1 MUTATED YLPM1 WILD-TYPE 
             18             271 
[1] "NEK7 MUTATION ANALYSIS"
[1] 3
  NEK7 MUTATED NEK7 WILD-TYPE 
             4            285 
  NEK7 MUTATED NEK7 WILD-TYPE 
             4            285 
[1] "SAP130 MUTATION ANALYSIS"
[1] 3
  SAP130 MUTATED SAP130 WILD-TYPE 
              11              278 
  SAP130 MUTATED SAP130 WILD-TYPE 
              11              278 
[1] "TLR4 MUTATION ANALYSIS"
[1] 3
  TLR4 MUTATED TLR4 WILD-TYPE 
            21            268 
  TLR4 MUTATED TLR4 WILD-TYPE 
            21            268 
[1] "DCHS1 MUTATION ANALYSIS"
[1] 3
  DCHS1 MUTATED DCHS1 WILD-TYPE 
             29             260 
  DCHS1 MUTATED DCHS1 WILD-TYPE 
             29             260 
[1] "IRS1 MUTATION ANALYSIS"
[1] 3
  IRS1 MUTATED IRS1 WILD-TYPE 
            20            269 
  IRS1 MUTATED IRS1 WILD-TYPE 
            20            269 
[1] "DDX43 MUTATION ANALYSIS"
[1] 3
  DDX43 MUTATED DDX43 WILD-TYPE 
             10             279 
  DDX43 MUTATED DDX43 WILD-TYPE 
             10             279 
[1] "MPRIP MUTATION ANALYSIS"
[1] 3
  MPRIP MUTATED MPRIP WILD-TYPE 
             14             275 
  MPRIP MUTATED MPRIP WILD-TYPE 
             14             275 
[1] "KRT24 MUTATION ANALYSIS"
[1] 3
  KRT24 MUTATED KRT24 WILD-TYPE 
              5             284 
  KRT24 MUTATED KRT24 WILD-TYPE 
              5             284 
[1] "TIMM44 MUTATION ANALYSIS"
[1] 3
  TIMM44 MUTATED TIMM44 WILD-TYPE 
               5              284 
  TIMM44 MUTATED TIMM44 WILD-TYPE 
               5              284 
[1] "UBC MUTATION ANALYSIS"
[1] 3
  UBC MUTATED UBC WILD-TYPE 
            7           282 
  UBC MUTATED UBC WILD-TYPE 
            7           282 
[1] "PPL MUTATION ANALYSIS"
[1] 3
  PPL MUTATED PPL WILD-TYPE 
           16           273 
  PPL MUTATED PPL WILD-TYPE 
           16           273 
[1] "LRP1 MUTATION ANALYSIS"
[1] 3
  LRP1 MUTATED LRP1 WILD-TYPE 
            30            259 
  LRP1 MUTATED LRP1 WILD-TYPE 
            30            259 
[1] "CTNNB1 MUTATION ANALYSIS"
[1] 3
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
              18              271 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
              18              271 
[1] "KBTBD10 MUTATION ANALYSIS"
[1] 3
  KBTBD10 MUTATED KBTBD10 WILD-TYPE 
                5               284 
  KBTBD10 MUTATED KBTBD10 WILD-TYPE 
                5               284 
[1] "PUS7 MUTATION ANALYSIS"
[1] 3
  PUS7 MUTATED PUS7 WILD-TYPE 
            10            279 
  PUS7 MUTATED PUS7 WILD-TYPE 
            10            279 
[1] "HEPACAM2 MUTATION ANALYSIS"
[1] 3
  HEPACAM2 MUTATED HEPACAM2 WILD-TYPE 
                 8                281 
  HEPACAM2 MUTATED HEPACAM2 WILD-TYPE 
                 8                281 
[1] "PADI3 MUTATION ANALYSIS"
[1] 3
  PADI3 MUTATED PADI3 WILD-TYPE 
             12             277 
  PADI3 MUTATED PADI3 WILD-TYPE 
             12             277 
[1] "EVL MUTATION ANALYSIS"
[1] 3
  EVL MUTATED EVL WILD-TYPE 
            7           282 
  EVL MUTATED EVL WILD-TYPE 
            7           282 
[1] "JHDM1D MUTATION ANALYSIS"
[1] 3
  JHDM1D MUTATED JHDM1D WILD-TYPE 
              10              279 
  JHDM1D MUTATED JHDM1D WILD-TYPE 
              10              279 
[1] "CNKSR2 MUTATION ANALYSIS"
[1] 3
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
              12              277 
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
              12              277 
[1] "UBXN6 MUTATION ANALYSIS"
[1] 3
  UBXN6 MUTATED UBXN6 WILD-TYPE 
             12             277 
  UBXN6 MUTATED UBXN6 WILD-TYPE 
             12             277 
[1] "GPATCH2 MUTATION ANALYSIS"
[1] 3
  GPATCH2 MUTATED GPATCH2 WILD-TYPE 
                7               282 
  GPATCH2 MUTATED GPATCH2 WILD-TYPE 
                7               282 
[1] "ZFP36L2 MUTATION ANALYSIS"
[1] 3
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
                8               281 
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
                8               281 
[1] "PRICKLE4 MUTATION ANALYSIS"
[1] 3
  PRICKLE4 MUTATED PRICKLE4 WILD-TYPE 
                 6                283 
  PRICKLE4 MUTATED PRICKLE4 WILD-TYPE 
                 6                283 
[1] "LRFN3 MUTATION ANALYSIS"
[1] 3
  LRFN3 MUTATED LRFN3 WILD-TYPE 
             18             271 
  LRFN3 MUTATED LRFN3 WILD-TYPE 
             18             271 
[1] "C7ORF49 MUTATION ANALYSIS"
[1] 3
  C7ORF49 MUTATED C7ORF49 WILD-TYPE 
                7               282 
  C7ORF49 MUTATED C7ORF49 WILD-TYPE 
                7               282 
[1] "FAM92B MUTATION ANALYSIS"
[1] 3
  FAM92B MUTATED FAM92B WILD-TYPE 
               3              286 
  FAM92B MUTATED FAM92B WILD-TYPE 
               3              286 
[1] "HCRTR2 MUTATION ANALYSIS"
[1] 3
  HCRTR2 MUTATED HCRTR2 WILD-TYPE 
               9              280 
  HCRTR2 MUTATED HCRTR2 WILD-TYPE 
               9              280 
[1] "TAS2R10 MUTATION ANALYSIS"
[1] 3
  TAS2R10 MUTATED TAS2R10 WILD-TYPE 
                3               286 
  TAS2R10 MUTATED TAS2R10 WILD-TYPE 
                3               286 
[1] "PTPDC1 MUTATION ANALYSIS"
[1] 3
  PTPDC1 MUTATED PTPDC1 WILD-TYPE 
               8              281 
  PTPDC1 MUTATED PTPDC1 WILD-TYPE 
               8              281 
[1] "THEMIS MUTATION ANALYSIS"
[1] 3
  THEMIS MUTATED THEMIS WILD-TYPE 
               8              281 
  THEMIS MUTATED THEMIS WILD-TYPE 
               8              281 
[1] "BRCA1 MUTATION ANALYSIS"
[1] 3
  BRCA1 MUTATED BRCA1 WILD-TYPE 
             15             274 
  BRCA1 MUTATED BRCA1 WILD-TYPE 
             15             274 
[1] "KCNJ10 MUTATION ANALYSIS"
[1] 3
  KCNJ10 MUTATED KCNJ10 WILD-TYPE 
              11              278 
  KCNJ10 MUTATED KCNJ10 WILD-TYPE 
              11              278 
[1] "TNK2 MUTATION ANALYSIS"
[1] 3
  TNK2 MUTATED TNK2 WILD-TYPE 
            11            278 
  TNK2 MUTATED TNK2 WILD-TYPE 
            11            278 
[1] "TMEM92 MUTATION ANALYSIS"
[1] 3
  TMEM92 MUTATED TMEM92 WILD-TYPE 
               3              286 
  TMEM92 MUTATED TMEM92 WILD-TYPE 
               3              286 
[1] "KCNH3 MUTATION ANALYSIS"
[1] 3
  KCNH3 MUTATED KCNH3 WILD-TYPE 
             16             273 
  KCNH3 MUTATED KCNH3 WILD-TYPE 
             16             273 
[1] "LMTK3 MUTATION ANALYSIS"
[1] 3
  LMTK3 MUTATED LMTK3 WILD-TYPE 
              8             281 
  LMTK3 MUTATED LMTK3 WILD-TYPE 
              8             281 
[1] "MRPL2 MUTATION ANALYSIS"
[1] 3
  MRPL2 MUTATED MRPL2 WILD-TYPE 
              6             283 
  MRPL2 MUTATED MRPL2 WILD-TYPE 
              6             283 
[1] "SEZ6 MUTATION ANALYSIS"
[1] 3
  SEZ6 MUTATED SEZ6 WILD-TYPE 
            10            279 
  SEZ6 MUTATED SEZ6 WILD-TYPE 
            10            279 
[1] "XK MUTATION ANALYSIS"
[1] 3
  XK MUTATED XK WILD-TYPE 
           5          284 
  XK MUTATED XK WILD-TYPE 
           5          284 
[1] "CNOT6 MUTATION ANALYSIS"
[1] 3
  CNOT6 MUTATED CNOT6 WILD-TYPE 
              7             282 
  CNOT6 MUTATED CNOT6 WILD-TYPE 
              7             282 
[1] "KCNH2 MUTATION ANALYSIS"
[1] 3
  KCNH2 MUTATED KCNH2 WILD-TYPE 
             13             276 
  KCNH2 MUTATED KCNH2 WILD-TYPE 
             13             276 
[1] "NLRC5 MUTATION ANALYSIS"
[1] 3
  NLRC5 MUTATED NLRC5 WILD-TYPE 
             19             270 
  NLRC5 MUTATED NLRC5 WILD-TYPE 
             19             270 
[1] "EPHA5 MUTATION ANALYSIS"
[1] 3
  EPHA5 MUTATED EPHA5 WILD-TYPE 
             27             262 
  EPHA5 MUTATED EPHA5 WILD-TYPE 
             27             262 
[1] "LRRC43 MUTATION ANALYSIS"
[1] 3
  LRRC43 MUTATED LRRC43 WILD-TYPE 
              10              279 
  LRRC43 MUTATED LRRC43 WILD-TYPE 
              10              279 
[1] "PTPN4 MUTATION ANALYSIS"
[1] 3
  PTPN4 MUTATED PTPN4 WILD-TYPE 
              9             280 
  PTPN4 MUTATED PTPN4 WILD-TYPE 
              9             280 
[1] "STK38 MUTATION ANALYSIS"
[1] 3
  STK38 MUTATED STK38 WILD-TYPE 
              6             283 
  STK38 MUTATED STK38 WILD-TYPE 
              6             283 
[1] "OR51A7 MUTATION ANALYSIS"
[1] 3
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               6              283 
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               6              283 
[1] "TUBE1 MUTATION ANALYSIS"
[1] 3
  TUBE1 MUTATED TUBE1 WILD-TYPE 
              7             282 
  TUBE1 MUTATED TUBE1 WILD-TYPE 
              7             282 
[1] "RINT1 MUTATION ANALYSIS"
[1] 3
  RINT1 MUTATED RINT1 WILD-TYPE 
              5             284 
  RINT1 MUTATED RINT1 WILD-TYPE 
              5             284 
[1] "UPK2 MUTATION ANALYSIS"
[1] 3
  UPK2 MUTATED UPK2 WILD-TYPE 
             3            286 
  UPK2 MUTATED UPK2 WILD-TYPE 
             3            286 
[1] "TIGD7 MUTATION ANALYSIS"
[1] 3
  TIGD7 MUTATED TIGD7 WILD-TYPE 
              8             281 
  TIGD7 MUTATED TIGD7 WILD-TYPE 
              8             281 
[1] "TERF2 MUTATION ANALYSIS"
[1] 3
  TERF2 MUTATED TERF2 WILD-TYPE 
             12             277 
  TERF2 MUTATED TERF2 WILD-TYPE 
             12             277 
[1] "ARHGEF17 MUTATION ANALYSIS"
[1] 3
  ARHGEF17 MUTATED ARHGEF17 WILD-TYPE 
                17                272 
  ARHGEF17 MUTATED ARHGEF17 WILD-TYPE 
                17                272 
[1] "FLG MUTATION ANALYSIS"
[1] 3
  FLG MUTATED FLG WILD-TYPE 
           62           227 
  FLG MUTATED FLG WILD-TYPE 
           62           227 
[1] "SAFB MUTATION ANALYSIS"
[1] 3
  SAFB MUTATED SAFB WILD-TYPE 
             9            280 
  SAFB MUTATED SAFB WILD-TYPE 
             9            280 
[1] "CD93 MUTATION ANALYSIS"
[1] 3
  CD93 MUTATED CD93 WILD-TYPE 
            11            278 
  CD93 MUTATED CD93 WILD-TYPE 
            11            278 
[1] "ERBB4 MUTATION ANALYSIS"
[1] 3
  ERBB4 MUTATED ERBB4 WILD-TYPE 
             39             250 
  ERBB4 MUTATED ERBB4 WILD-TYPE 
             39             250 
[1] "KRTAP10-9 MUTATION ANALYSIS"
[1] 3
  KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE 
                  9                 280 
  KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE 
                  9                 280 
[1] "LYSMD3 MUTATION ANALYSIS"
[1] 3
  LYSMD3 MUTATED LYSMD3 WILD-TYPE 
              10              279 
  LYSMD3 MUTATED LYSMD3 WILD-TYPE 
              10              279 
[1] "KCTD9 MUTATION ANALYSIS"
[1] 3
  KCTD9 MUTATED KCTD9 WILD-TYPE 
             10             279 
  KCTD9 MUTATED KCTD9 WILD-TYPE 
             10             279 
[1] "CREM MUTATION ANALYSIS"
[1] 3
  CREM MUTATED CREM WILD-TYPE 
             4            285 
  CREM MUTATED CREM WILD-TYPE 
             4            285 
[1] "MTMR11 MUTATION ANALYSIS"
[1] 3
  MTMR11 MUTATED MTMR11 WILD-TYPE 
               8              281 
  MTMR11 MUTATED MTMR11 WILD-TYPE 
               8              281 
[1] "ANAPC1 MUTATION ANALYSIS"
[1] 3
  ANAPC1 MUTATED ANAPC1 WILD-TYPE 
              13              276 
  ANAPC1 MUTATED ANAPC1 WILD-TYPE 
              13              276 
[1] "EYA4 MUTATION ANALYSIS"
[1] 3
  EYA4 MUTATED EYA4 WILD-TYPE 
            15            274 
  EYA4 MUTATED EYA4 WILD-TYPE 
            15            274 
[1] "H2AFY2 MUTATION ANALYSIS"
[1] 3
  H2AFY2 MUTATED H2AFY2 WILD-TYPE 
               7              282 
  H2AFY2 MUTATED H2AFY2 WILD-TYPE 
               7              282 
[1] "RDX MUTATION ANALYSIS"
[1] 3
  RDX MUTATED RDX WILD-TYPE 
            7           282 
  RDX MUTATED RDX WILD-TYPE 
            7           282 
[1] "TAF7L MUTATION ANALYSIS"
[1] 3
  TAF7L MUTATED TAF7L WILD-TYPE 
              8             281 
  TAF7L MUTATED TAF7L WILD-TYPE 
              8             281 
[1] "OPLAH MUTATION ANALYSIS"
[1] 3
  OPLAH MUTATED OPLAH WILD-TYPE 
             14             275 
  OPLAH MUTATED OPLAH WILD-TYPE 
             14             275 
[1] "ACACB MUTATION ANALYSIS"
[1] 3
  ACACB MUTATED ACACB WILD-TYPE 
             28             261 
  ACACB MUTATED ACACB WILD-TYPE 
             28             261 
[1] "TNS4 MUTATION ANALYSIS"
[1] 3
  TNS4 MUTATED TNS4 WILD-TYPE 
            12            277 
  TNS4 MUTATED TNS4 WILD-TYPE 
            12            277 
[1] "CHRNB3 MUTATION ANALYSIS"
[1] 3
  CHRNB3 MUTATED CHRNB3 WILD-TYPE 
              11              278 
  CHRNB3 MUTATED CHRNB3 WILD-TYPE 
              11              278 
[1] "CLGN MUTATION ANALYSIS"
[1] 3
  CLGN MUTATED CLGN WILD-TYPE 
             8            281 
  CLGN MUTATED CLGN WILD-TYPE 
             8            281 
[1] "MYCT1 MUTATION ANALYSIS"
[1] 3
  MYCT1 MUTATED MYCT1 WILD-TYPE 
              6             283 
  MYCT1 MUTATED MYCT1 WILD-TYPE 
              6             283 
[1] "FOLH1 MUTATION ANALYSIS"
[1] 3
  FOLH1 MUTATED FOLH1 WILD-TYPE 
             11             278 
  FOLH1 MUTATED FOLH1 WILD-TYPE 
             11             278 
[1] "PIGT MUTATION ANALYSIS"
[1] 3
  PIGT MUTATED PIGT WILD-TYPE 
             8            281 
  PIGT MUTATED PIGT WILD-TYPE 
             8            281 
[1] "SBF1 MUTATION ANALYSIS"
[1] 3
  SBF1 MUTATED SBF1 WILD-TYPE 
            28            261 
  SBF1 MUTATED SBF1 WILD-TYPE 
            28            261 
[1] "SIK1 MUTATION ANALYSIS"
[1] 3
  SIK1 MUTATED SIK1 WILD-TYPE 
             5            284 
  SIK1 MUTATED SIK1 WILD-TYPE 
             5            284 
[1] "AGBL5 MUTATION ANALYSIS"
[1] 3
  AGBL5 MUTATED AGBL5 WILD-TYPE 
             12             277 
  AGBL5 MUTATED AGBL5 WILD-TYPE 
             12             277 
[1] "NDST2 MUTATION ANALYSIS"
[1] 3
  NDST2 MUTATED NDST2 WILD-TYPE 
              8             281 
  NDST2 MUTATED NDST2 WILD-TYPE 
              8             281 
[1] "ZDHHC5 MUTATION ANALYSIS"
[1] 3
  ZDHHC5 MUTATED ZDHHC5 WILD-TYPE 
              10              279 
  ZDHHC5 MUTATED ZDHHC5 WILD-TYPE 
              10              279 
[1] "GFOD1 MUTATION ANALYSIS"
[1] 3
  GFOD1 MUTATED GFOD1 WILD-TYPE 
             13             276 
  GFOD1 MUTATED GFOD1 WILD-TYPE 
             13             276 
[1] "KIAA1462 MUTATION ANALYSIS"
[1] 3
  KIAA1462 MUTATED KIAA1462 WILD-TYPE 
                22                267 
  KIAA1462 MUTATED KIAA1462 WILD-TYPE 
                22                267 
[1] "OGFRL1 MUTATION ANALYSIS"
[1] 3
  OGFRL1 MUTATED OGFRL1 WILD-TYPE 
              10              279 
  OGFRL1 MUTATED OGFRL1 WILD-TYPE 
              10              279 
[1] "ZNF367 MUTATION ANALYSIS"
[1] 3
  ZNF367 MUTATED ZNF367 WILD-TYPE 
               4              285 
  ZNF367 MUTATED ZNF367 WILD-TYPE 
               4              285 
[1] "PHF20 MUTATION ANALYSIS"
[1] 3
  PHF20 MUTATED PHF20 WILD-TYPE 
             11             278 
  PHF20 MUTATED PHF20 WILD-TYPE 
             11             278 
[1] "FAM186B MUTATION ANALYSIS"
[1] 3
  FAM186B MUTATED FAM186B WILD-TYPE 
               10               279 
  FAM186B MUTATED FAM186B WILD-TYPE 
               10               279 
[1] "EPB49 MUTATION ANALYSIS"
[1] 3
  EPB49 MUTATED EPB49 WILD-TYPE 
              8             281 
  EPB49 MUTATED EPB49 WILD-TYPE 
              8             281 
[1] "MDM2 MUTATION ANALYSIS"
[1] 3
  MDM2 MUTATED MDM2 WILD-TYPE 
             5            284 
  MDM2 MUTATED MDM2 WILD-TYPE 
             5            284 
[1] "SCN10A MUTATION ANALYSIS"
[1] 3
  SCN10A MUTATED SCN10A WILD-TYPE 
              28              261 
  SCN10A MUTATED SCN10A WILD-TYPE 
              28              261 
[1] "SERPINA1 MUTATION ANALYSIS"
[1] 3
  SERPINA1 MUTATED SERPINA1 WILD-TYPE 
                 7                282 
  SERPINA1 MUTATED SERPINA1 WILD-TYPE 
                 7                282 
[1] "LARP1 MUTATION ANALYSIS"
[1] 3
  LARP1 MUTATED LARP1 WILD-TYPE 
              9             280 
  LARP1 MUTATED LARP1 WILD-TYPE 
              9             280 
[1] "MLH1 MUTATION ANALYSIS"
[1] 3
  MLH1 MUTATED MLH1 WILD-TYPE 
             6            283 
  MLH1 MUTATED MLH1 WILD-TYPE 
             6            283 
[1] "MAN2B1 MUTATION ANALYSIS"
[1] 3
  MAN2B1 MUTATED MAN2B1 WILD-TYPE 
              16              273 
  MAN2B1 MUTATED MAN2B1 WILD-TYPE 
              16              273 
[1] "SLC7A10 MUTATION ANALYSIS"
[1] 3
  SLC7A10 MUTATED SLC7A10 WILD-TYPE 
                5               284 
  SLC7A10 MUTATED SLC7A10 WILD-TYPE 
                5               284 
[1] "RGS2 MUTATION ANALYSIS"
[1] 3
  RGS2 MUTATED RGS2 WILD-TYPE 
             3            286 
  RGS2 MUTATED RGS2 WILD-TYPE 
             3            286 
[1] "EAF2 MUTATION ANALYSIS"
[1] 3
  EAF2 MUTATED EAF2 WILD-TYPE 
             7            282 
  EAF2 MUTATED EAF2 WILD-TYPE 
             7            282 
[1] "FAM82A1 MUTATION ANALYSIS"
[1] 3
  FAM82A1 MUTATED FAM82A1 WILD-TYPE 
                4               285 
  FAM82A1 MUTATED FAM82A1 WILD-TYPE 
                4               285 
[1] "PIWIL2 MUTATION ANALYSIS"
[1] 3
  PIWIL2 MUTATED PIWIL2 WILD-TYPE 
               6              283 
  PIWIL2 MUTATED PIWIL2 WILD-TYPE 
               6              283 
[1] "KCTD21 MUTATION ANALYSIS"
[1] 3
  KCTD21 MUTATED KCTD21 WILD-TYPE 
               7              282 
  KCTD21 MUTATED KCTD21 WILD-TYPE 
               7              282 
[1] "ITSN2 MUTATION ANALYSIS"
[1] 3
  ITSN2 MUTATED ITSN2 WILD-TYPE 
             16             273 
  ITSN2 MUTATED ITSN2 WILD-TYPE 
             16             273 
[1] "GLYR1 MUTATION ANALYSIS"
[1] 3
  GLYR1 MUTATED GLYR1 WILD-TYPE 
             13             276 
  GLYR1 MUTATED GLYR1 WILD-TYPE 
             13             276 
[1] "PHACTR1 MUTATION ANALYSIS"
[1] 3
  PHACTR1 MUTATED PHACTR1 WILD-TYPE 
                9               280 
  PHACTR1 MUTATED PHACTR1 WILD-TYPE 
                9               280 
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
             3            286 
  NRAS MUTATED NRAS WILD-TYPE 
             3            286 
[1] "STAU2 MUTATION ANALYSIS"
[1] 3
  STAU2 MUTATED STAU2 WILD-TYPE 
              8             281 
  STAU2 MUTATED STAU2 WILD-TYPE 
              8             281 
[1] "SLC4A3 MUTATION ANALYSIS"
[1] 3
  SLC4A3 MUTATED SLC4A3 WILD-TYPE 
              15              274 
  SLC4A3 MUTATED SLC4A3 WILD-TYPE 
              15              274 
[1] "RAI1 MUTATION ANALYSIS"
[1] 3
  RAI1 MUTATED RAI1 WILD-TYPE 
            23            266 
  RAI1 MUTATED RAI1 WILD-TYPE 
            23            266 
[1] "PPP2R3B MUTATION ANALYSIS"
[1] 3
  PPP2R3B MUTATED PPP2R3B WILD-TYPE 
               15               274 
  PPP2R3B MUTATED PPP2R3B WILD-TYPE 
               15               274 
[1] "SLC45A4 MUTATION ANALYSIS"
[1] 3
  SLC45A4 MUTATED SLC45A4 WILD-TYPE 
               18               271 
  SLC45A4 MUTATED SLC45A4 WILD-TYPE 
               18               271 
[1] "KIAA1609 MUTATION ANALYSIS"
[1] 3
  KIAA1609 MUTATED KIAA1609 WILD-TYPE 
                 7                282 
  KIAA1609 MUTATED KIAA1609 WILD-TYPE 
                 7                282 
[1] "ZMYM5 MUTATION ANALYSIS"
[1] 3
  ZMYM5 MUTATED ZMYM5 WILD-TYPE 
              8             281 
  ZMYM5 MUTATED ZMYM5 WILD-TYPE 
              8             281 
[1] "MCM4 MUTATION ANALYSIS"
[1] 3
  MCM4 MUTATED MCM4 WILD-TYPE 
            12            277 
  MCM4 MUTATED MCM4 WILD-TYPE 
            12            277 
[1] "NBN MUTATION ANALYSIS"
[1] 3
  NBN MUTATED NBN WILD-TYPE 
           13           276 
  NBN MUTATED NBN WILD-TYPE 
           13           276 
[1] "C19ORF26 MUTATION ANALYSIS"
[1] 3
  C19ORF26 MUTATED C19ORF26 WILD-TYPE 
                 7                282 
  C19ORF26 MUTATED C19ORF26 WILD-TYPE 
                 7                282 
[1] "NARG2 MUTATION ANALYSIS"
[1] 3
  NARG2 MUTATED NARG2 WILD-TYPE 
             11             278 
  NARG2 MUTATED NARG2 WILD-TYPE 
             11             278 
[1] "MMEL1 MUTATION ANALYSIS"
[1] 3
  MMEL1 MUTATED MMEL1 WILD-TYPE 
              6             283 
  MMEL1 MUTATED MMEL1 WILD-TYPE 
              6             283 
[1] "DYX1C1 MUTATION ANALYSIS"
[1] 3
  DYX1C1 MUTATED DYX1C1 WILD-TYPE 
              10              279 
  DYX1C1 MUTATED DYX1C1 WILD-TYPE 
              10              279 
[1] "ABCA5 MUTATION ANALYSIS"
[1] 3
  ABCA5 MUTATED ABCA5 WILD-TYPE 
             18             271 
  ABCA5 MUTATED ABCA5 WILD-TYPE 
             18             271 
[1] "NOB1 MUTATION ANALYSIS"
[1] 3
  NOB1 MUTATED NOB1 WILD-TYPE 
             7            282 
  NOB1 MUTATED NOB1 WILD-TYPE 
             7            282 
[1] "ELL2 MUTATION ANALYSIS"
[1] 3
  ELL2 MUTATED ELL2 WILD-TYPE 
            12            277 
  ELL2 MUTATED ELL2 WILD-TYPE 
            12            277 
[1] "MUT MUTATION ANALYSIS"
[1] 3
  MUT MUTATED MUT WILD-TYPE 
            6           283 
  MUT MUTATED MUT WILD-TYPE 
            6           283 
[1] "NT5DC1 MUTATION ANALYSIS"
[1] 3
  NT5DC1 MUTATED NT5DC1 WILD-TYPE 
               6              283 
  NT5DC1 MUTATED NT5DC1 WILD-TYPE 
               6              283 
[1] "FBN3 MUTATION ANALYSIS"
[1] 3
  FBN3 MUTATED FBN3 WILD-TYPE 
            28            261 
  FBN3 MUTATED FBN3 WILD-TYPE 
            28            261 
[1] "ENOSF1 MUTATION ANALYSIS"
[1] 3
  ENOSF1 MUTATED ENOSF1 WILD-TYPE 
               7              282 
  ENOSF1 MUTATED ENOSF1 WILD-TYPE 
               7              282 
[1] "ZBTB49 MUTATION ANALYSIS"
[1] 3
  ZBTB49 MUTATED ZBTB49 WILD-TYPE 
               7              282 
  ZBTB49 MUTATED ZBTB49 WILD-TYPE 
               7              282 
[1] "SLC22A16 MUTATION ANALYSIS"
[1] 3
  SLC22A16 MUTATED SLC22A16 WILD-TYPE 
                11                278 
  SLC22A16 MUTATED SLC22A16 WILD-TYPE 
                11                278 
[1] "KCNC1 MUTATION ANALYSIS"
[1] 3
  KCNC1 MUTATED KCNC1 WILD-TYPE 
              7             282 
  KCNC1 MUTATED KCNC1 WILD-TYPE 
              7             282 
[1] "MZF1 MUTATION ANALYSIS"
[1] 3
  MZF1 MUTATED MZF1 WILD-TYPE 
            10            279 
  MZF1 MUTATED MZF1 WILD-TYPE 
            10            279 
[1] "MGA MUTATION ANALYSIS"
[1] 3
  MGA MUTATED MGA WILD-TYPE 
           24           265 
  MGA MUTATED MGA WILD-TYPE 
           24           265 
[1] "GTF3C4 MUTATION ANALYSIS"
[1] 3
  GTF3C4 MUTATED GTF3C4 WILD-TYPE 
              12              277 
  GTF3C4 MUTATED GTF3C4 WILD-TYPE 
              12              277 
[1] "GPATCH4 MUTATION ANALYSIS"
[1] 3
  GPATCH4 MUTATED GPATCH4 WILD-TYPE 
                8               281 
  GPATCH4 MUTATED GPATCH4 WILD-TYPE 
                8               281 
[1] "NOS3 MUTATION ANALYSIS"
[1] 3
  NOS3 MUTATED NOS3 WILD-TYPE 
            10            279 
  NOS3 MUTATED NOS3 WILD-TYPE 
            10            279 
[1] "IK MUTATION ANALYSIS"
[1] 3
  IK MUTATED IK WILD-TYPE 
           6          283 
  IK MUTATED IK WILD-TYPE 
           6          283 
[1] "ELOVL2 MUTATION ANALYSIS"
[1] 3
  ELOVL2 MUTATED ELOVL2 WILD-TYPE 
               7              282 
  ELOVL2 MUTATED ELOVL2 WILD-TYPE 
               7              282 
[1] "SMARCAL1 MUTATION ANALYSIS"
[1] 3
  SMARCAL1 MUTATED SMARCAL1 WILD-TYPE 
                13                276 
  SMARCAL1 MUTATED SMARCAL1 WILD-TYPE 
                13                276 
[1] "SLC38A6 MUTATION ANALYSIS"
[1] 3
  SLC38A6 MUTATED SLC38A6 WILD-TYPE 
                8               281 
  SLC38A6 MUTATED SLC38A6 WILD-TYPE 
                8               281 
[1] "BCL9 MUTATION ANALYSIS"
[1] 3
  BCL9 MUTATED BCL9 WILD-TYPE 
            19            270 
  BCL9 MUTATED BCL9 WILD-TYPE 
            19            270 
[1] "CLIP1 MUTATION ANALYSIS"
[1] 3
  CLIP1 MUTATED CLIP1 WILD-TYPE 
             15             274 
  CLIP1 MUTATED CLIP1 WILD-TYPE 
             15             274 
[1] "AMPD3 MUTATION ANALYSIS"
[1] 3
  AMPD3 MUTATED AMPD3 WILD-TYPE 
             19             270 
  AMPD3 MUTATED AMPD3 WILD-TYPE 
             19             270 
[1] "DMC1 MUTATION ANALYSIS"
[1] 3
  DMC1 MUTATED DMC1 WILD-TYPE 
             8            281 
  DMC1 MUTATED DMC1 WILD-TYPE 
             8            281 
[1] "USP8 MUTATION ANALYSIS"
[1] 3
  USP8 MUTATED USP8 WILD-TYPE 
             7            282 
  USP8 MUTATED USP8 WILD-TYPE 
             7            282 
[1] "GPR114 MUTATION ANALYSIS"
[1] 3
  GPR114 MUTATED GPR114 WILD-TYPE 
               9              280 
  GPR114 MUTATED GPR114 WILD-TYPE 
               9              280 
[1] "PTPRJ MUTATION ANALYSIS"
[1] 3
  PTPRJ MUTATED PTPRJ WILD-TYPE 
             24             265 
  PTPRJ MUTATED PTPRJ WILD-TYPE 
             24             265 
[1] "BRD3 MUTATION ANALYSIS"
[1] 3
  BRD3 MUTATED BRD3 WILD-TYPE 
            16            273 
  BRD3 MUTATED BRD3 WILD-TYPE 
            16            273 
[1] "SLFN12 MUTATION ANALYSIS"
[1] 3
  SLFN12 MUTATED SLFN12 WILD-TYPE 
               7              282 
  SLFN12 MUTATED SLFN12 WILD-TYPE 
               7              282 
[1] "FANCE MUTATION ANALYSIS"
[1] 3
  FANCE MUTATED FANCE WILD-TYPE 
              7             282 
  FANCE MUTATED FANCE WILD-TYPE 
              7             282 
[1] "DUSP9 MUTATION ANALYSIS"
[1] 3
  DUSP9 MUTATED DUSP9 WILD-TYPE 
              5             284 
  DUSP9 MUTATED DUSP9 WILD-TYPE 
              5             284 
[1] "AKAP11 MUTATION ANALYSIS"
[1] 3
  AKAP11 MUTATED AKAP11 WILD-TYPE 
              14              275 
  AKAP11 MUTATED AKAP11 WILD-TYPE 
              14              275 
[1] "EXOSC8 MUTATION ANALYSIS"
[1] 3
  EXOSC8 MUTATED EXOSC8 WILD-TYPE 
               5              284 
  EXOSC8 MUTATED EXOSC8 WILD-TYPE 
               5              284 
[1] "PNMT MUTATION ANALYSIS"
[1] 3
  PNMT MUTATED PNMT WILD-TYPE 
             8            281 
  PNMT MUTATED PNMT WILD-TYPE 
             8            281 
[1] "MAP2K1 MUTATION ANALYSIS"
[1] 3
  MAP2K1 MUTATED MAP2K1 WILD-TYPE 
               5              284 
  MAP2K1 MUTATED MAP2K1 WILD-TYPE 
               5              284 
[1] "ZNF292 MUTATION ANALYSIS"
[1] 3
  ZNF292 MUTATED ZNF292 WILD-TYPE 
              21              268 
  ZNF292 MUTATED ZNF292 WILD-TYPE 
              21              268 
[1] "SCN9A MUTATION ANALYSIS"
[1] 3
  SCN9A MUTATED SCN9A WILD-TYPE 
             28             261 
  SCN9A MUTATED SCN9A WILD-TYPE 
             28             261 
[1] "KANK4 MUTATION ANALYSIS"
[1] 3
  KANK4 MUTATED KANK4 WILD-TYPE 
             10             279 
  KANK4 MUTATED KANK4 WILD-TYPE 
             10             279 
[1] "DQX1 MUTATION ANALYSIS"
[1] 3
  DQX1 MUTATED DQX1 WILD-TYPE 
             9            280 
  DQX1 MUTATED DQX1 WILD-TYPE 
             9            280 
[1] "CYP7B1 MUTATION ANALYSIS"
[1] 3
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
              16              273 
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
              16              273 
[1] "C3 MUTATION ANALYSIS"
[1] 3
  C3 MUTATED C3 WILD-TYPE 
          25          264 
  C3 MUTATED C3 WILD-TYPE 
          25          264 
[1] "ATRIP MUTATION ANALYSIS"
[1] 3
  ATRIP MUTATED ATRIP WILD-TYPE 
              5             284 
  ATRIP MUTATED ATRIP WILD-TYPE 
              5             284 
[1] "CDC5L MUTATION ANALYSIS"
[1] 3
  CDC5L MUTATED CDC5L WILD-TYPE 
             15             274 
  CDC5L MUTATED CDC5L WILD-TYPE 
             15             274 
[1] "SMAD2 MUTATION ANALYSIS"
[1] 3
  SMAD2 MUTATED SMAD2 WILD-TYPE 
              9             280 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
              9             280 
[1] "IDE MUTATION ANALYSIS"
[1] 3
  IDE MUTATED IDE WILD-TYPE 
            9           280 
  IDE MUTATED IDE WILD-TYPE 
            9           280 
[1] "PCBP2 MUTATION ANALYSIS"
[1] 3
  PCBP2 MUTATED PCBP2 WILD-TYPE 
              4             285 
  PCBP2 MUTATED PCBP2 WILD-TYPE 
              4             285 
[1] "CBLN3 MUTATION ANALYSIS"
[1] 3
  CBLN3 MUTATED CBLN3 WILD-TYPE 
              5             284 
  CBLN3 MUTATED CBLN3 WILD-TYPE 
              5             284 
[1] "AP3M2 MUTATION ANALYSIS"
[1] 3
  AP3M2 MUTATED AP3M2 WILD-TYPE 
             10             279 
  AP3M2 MUTATED AP3M2 WILD-TYPE 
             10             279 
[1] "HOOK1 MUTATION ANALYSIS"
[1] 3
  HOOK1 MUTATED HOOK1 WILD-TYPE 
              6             283 
  HOOK1 MUTATED HOOK1 WILD-TYPE 
              6             283 
[1] "DUSP11 MUTATION ANALYSIS"
[1] 3
  DUSP11 MUTATED DUSP11 WILD-TYPE 
               4              285 
  DUSP11 MUTATED DUSP11 WILD-TYPE 
               4              285 
[1] "CNKSR1 MUTATION ANALYSIS"
[1] 3
  CNKSR1 MUTATED CNKSR1 WILD-TYPE 
               7              282 
  CNKSR1 MUTATED CNKSR1 WILD-TYPE 
               7              282 
[1] "PPARGC1B MUTATION ANALYSIS"
[1] 3
  PPARGC1B MUTATED PPARGC1B WILD-TYPE 
                 7                282 
  PPARGC1B MUTATED PPARGC1B WILD-TYPE 
                 7                282 
[1] "SCAMP2 MUTATION ANALYSIS"
[1] 3
  SCAMP2 MUTATED SCAMP2 WILD-TYPE 
               6              283 
  SCAMP2 MUTATED SCAMP2 WILD-TYPE 
               6              283 
[1] "TMEM79 MUTATION ANALYSIS"
[1] 3
  TMEM79 MUTATED TMEM79 WILD-TYPE 
               6              283 
  TMEM79 MUTATED TMEM79 WILD-TYPE 
               6              283 
[1] "CD1E MUTATION ANALYSIS"
[1] 3
  CD1E MUTATED CD1E WILD-TYPE 
             7            282 
  CD1E MUTATED CD1E WILD-TYPE 
             7            282 
[1] "EEF2K MUTATION ANALYSIS"
[1] 3
  EEF2K MUTATED EEF2K WILD-TYPE 
              9             280 
  EEF2K MUTATED EEF2K WILD-TYPE 
              9             280 
[1] "MON2 MUTATION ANALYSIS"
[1] 3
  MON2 MUTATED MON2 WILD-TYPE 
            14            275 
  MON2 MUTATED MON2 WILD-TYPE 
            14            275 
[1] "FAAH MUTATION ANALYSIS"
[1] 3
  FAAH MUTATED FAAH WILD-TYPE 
             4            285 
  FAAH MUTATED FAAH WILD-TYPE 
             4            285 
[1] "BTNL8 MUTATION ANALYSIS"
[1] 3
  BTNL8 MUTATED BTNL8 WILD-TYPE 
              6             283 
  BTNL8 MUTATED BTNL8 WILD-TYPE 
              6             283 
[1] "MAP1A MUTATION ANALYSIS"
[1] 3
  MAP1A MUTATED MAP1A WILD-TYPE 
             15             274 
  MAP1A MUTATED MAP1A WILD-TYPE 
             15             274 
[1] "KIAA1539 MUTATION ANALYSIS"
[1] 3
  KIAA1539 MUTATED KIAA1539 WILD-TYPE 
                 6                283 
  KIAA1539 MUTATED KIAA1539 WILD-TYPE 
                 6                283 
[1] "CEACAM3 MUTATION ANALYSIS"
[1] 3
  CEACAM3 MUTATED CEACAM3 WILD-TYPE 
                7               282 
  CEACAM3 MUTATED CEACAM3 WILD-TYPE 
                7               282 
[1] "NUPL2 MUTATION ANALYSIS"
[1] 3
  NUPL2 MUTATED NUPL2 WILD-TYPE 
              7             282 
  NUPL2 MUTATED NUPL2 WILD-TYPE 
              7             282 
[1] "WAPAL MUTATION ANALYSIS"
[1] 3
  WAPAL MUTATED WAPAL WILD-TYPE 
             13             276 
  WAPAL MUTATED WAPAL WILD-TYPE 
             13             276 
[1] "BTRC MUTATION ANALYSIS"
[1] 3
  BTRC MUTATED BTRC WILD-TYPE 
             8            281 
  BTRC MUTATED BTRC WILD-TYPE 
             8            281 
[1] "GPC4 MUTATION ANALYSIS"
[1] 3
  GPC4 MUTATED GPC4 WILD-TYPE 
             9            280 
  GPC4 MUTATED GPC4 WILD-TYPE 
             9            280 
[1] "GANAB MUTATION ANALYSIS"
[1] 3
  GANAB MUTATED GANAB WILD-TYPE 
             11             278 
  GANAB MUTATED GANAB WILD-TYPE 
             11             278 
[1] "RNMT MUTATION ANALYSIS"
[1] 3
  RNMT MUTATED RNMT WILD-TYPE 
             8            281 
  RNMT MUTATED RNMT WILD-TYPE 
             8            281 
[1] "IGSF21 MUTATION ANALYSIS"
[1] 3
  IGSF21 MUTATED IGSF21 WILD-TYPE 
               3              286 
  IGSF21 MUTATED IGSF21 WILD-TYPE 
               3              286 
[1] "EPHB6 MUTATION ANALYSIS"
[1] 3
  EPHB6 MUTATED EPHB6 WILD-TYPE 
             11             278 
  EPHB6 MUTATED EPHB6 WILD-TYPE 
             11             278 
[1] "PNPLA7 MUTATION ANALYSIS"
[1] 3
  PNPLA7 MUTATED PNPLA7 WILD-TYPE 
              20              269 
  PNPLA7 MUTATED PNPLA7 WILD-TYPE 
              20              269 
[1] "NAA16 MUTATION ANALYSIS"
[1] 3
  NAA16 MUTATED NAA16 WILD-TYPE 
              8             281 
  NAA16 MUTATED NAA16 WILD-TYPE 
              8             281 
[1] "NF1 MUTATION ANALYSIS"
[1] 3
  NF1 MUTATED NF1 WILD-TYPE 
           24           265 
  NF1 MUTATED NF1 WILD-TYPE 
           24           265 
[1] "GALK1 MUTATION ANALYSIS"
[1] 3
  GALK1 MUTATED GALK1 WILD-TYPE 
              4             285 
  GALK1 MUTATED GALK1 WILD-TYPE 
              4             285 
[1] "CHGB MUTATION ANALYSIS"
[1] 3
  CHGB MUTATED CHGB WILD-TYPE 
            12            277 
  CHGB MUTATED CHGB WILD-TYPE 
            12            277 
[1] "TCF7 MUTATION ANALYSIS"
[1] 3
  TCF7 MUTATED TCF7 WILD-TYPE 
             8            281 
  TCF7 MUTATED TCF7 WILD-TYPE 
             8            281 
[1] "PIAS3 MUTATION ANALYSIS"
[1] 3
  PIAS3 MUTATED PIAS3 WILD-TYPE 
              5             284 
  PIAS3 MUTATED PIAS3 WILD-TYPE 
              5             284 
[1] "SLC12A1 MUTATION ANALYSIS"
[1] 3
  SLC12A1 MUTATED SLC12A1 WILD-TYPE 
               21               268 
  SLC12A1 MUTATED SLC12A1 WILD-TYPE 
               21               268 
[1] "IFNA17 MUTATION ANALYSIS"
[1] 3
  IFNA17 MUTATED IFNA17 WILD-TYPE 
               4              285 
  IFNA17 MUTATED IFNA17 WILD-TYPE 
               4              285 
[1] "SPATA5L1 MUTATION ANALYSIS"
[1] 3
  SPATA5L1 MUTATED SPATA5L1 WILD-TYPE 
                 7                282 
  SPATA5L1 MUTATED SPATA5L1 WILD-TYPE 
                 7                282 
[1] "SYCP2 MUTATION ANALYSIS"
[1] 3
  SYCP2 MUTATED SYCP2 WILD-TYPE 
             15             274 
  SYCP2 MUTATED SYCP2 WILD-TYPE 
             15             274 
[1] "CNGA4 MUTATION ANALYSIS"
[1] 3
  CNGA4 MUTATED CNGA4 WILD-TYPE 
             18             271 
  CNGA4 MUTATED CNGA4 WILD-TYPE 
             18             271 
[1] "ACTG2 MUTATION ANALYSIS"
[1] 3
  ACTG2 MUTATED ACTG2 WILD-TYPE 
              9             280 
  ACTG2 MUTATED ACTG2 WILD-TYPE 
              9             280 
[1] "FIGNL1 MUTATION ANALYSIS"
[1] 3
  FIGNL1 MUTATED FIGNL1 WILD-TYPE 
               9              280 
  FIGNL1 MUTATED FIGNL1 WILD-TYPE 
               9              280 
[1] "LINGO4 MUTATION ANALYSIS"
[1] 3
  LINGO4 MUTATED LINGO4 WILD-TYPE 
              10              279 
  LINGO4 MUTATED LINGO4 WILD-TYPE 
              10              279 
[1] "PARP15 MUTATION ANALYSIS"
[1] 3
  PARP15 MUTATED PARP15 WILD-TYPE 
               4              285 
  PARP15 MUTATED PARP15 WILD-TYPE 
               4              285 
[1] "GIMAP7 MUTATION ANALYSIS"
[1] 3
  GIMAP7 MUTATED GIMAP7 WILD-TYPE 
               5              284 
  GIMAP7 MUTATED GIMAP7 WILD-TYPE 
               5              284 
[1] "KIRREL MUTATION ANALYSIS"
[1] 3
  KIRREL MUTATED KIRREL WILD-TYPE 
              14              275 
  KIRREL MUTATED KIRREL WILD-TYPE 
              14              275 
[1] "PRKAR1B MUTATION ANALYSIS"
[1] 3
  PRKAR1B MUTATED PRKAR1B WILD-TYPE 
                5               284 
  PRKAR1B MUTATED PRKAR1B WILD-TYPE 
                5               284 
[1] "CLCNKB MUTATION ANALYSIS"
[1] 3
  CLCNKB MUTATED CLCNKB WILD-TYPE 
              13              276 
  CLCNKB MUTATED CLCNKB WILD-TYPE 
              13              276 
[1] "LSS MUTATION ANALYSIS"
[1] 3
  LSS MUTATED LSS WILD-TYPE 
            9           280 
  LSS MUTATED LSS WILD-TYPE 
            9           280 
[1] "KIF2B MUTATION ANALYSIS"
[1] 3
  KIF2B MUTATED KIF2B WILD-TYPE 
             27             262 
  KIF2B MUTATED KIF2B WILD-TYPE 
             27             262 
[1] "LCE1A MUTATION ANALYSIS"
[1] 3
  LCE1A MUTATED LCE1A WILD-TYPE 
              3             286 
  LCE1A MUTATED LCE1A WILD-TYPE 
              3             286 
[1] "PRSS48 MUTATION ANALYSIS"
[1] 3
  PRSS48 MUTATED PRSS48 WILD-TYPE 
               6              283 
  PRSS48 MUTATED PRSS48 WILD-TYPE 
               6              283 
[1] "FGF13 MUTATION ANALYSIS"
[1] 3
  FGF13 MUTATED FGF13 WILD-TYPE 
             10             279 
  FGF13 MUTATED FGF13 WILD-TYPE 
             10             279 
[1] "GPRASP1 MUTATION ANALYSIS"
[1] 3
  GPRASP1 MUTATED GPRASP1 WILD-TYPE 
               15               274 
  GPRASP1 MUTATED GPRASP1 WILD-TYPE 
               15               274 
[1] "RERE MUTATION ANALYSIS"
[1] 3
  RERE MUTATED RERE WILD-TYPE 
            20            269 
  RERE MUTATED RERE WILD-TYPE 
            20            269 
[1] "PPP1R13B MUTATION ANALYSIS"
[1] 3
  PPP1R13B MUTATED PPP1R13B WILD-TYPE 
                10                279 
  PPP1R13B MUTATED PPP1R13B WILD-TYPE 
                10                279 
[1] "LRP12 MUTATION ANALYSIS"
[1] 3
  LRP12 MUTATED LRP12 WILD-TYPE 
             23             266 
  LRP12 MUTATED LRP12 WILD-TYPE 
             23             266 
[1] "ATP8B1 MUTATION ANALYSIS"
[1] 3
  ATP8B1 MUTATED ATP8B1 WILD-TYPE 
              15              274 
  ATP8B1 MUTATED ATP8B1 WILD-TYPE 
              15              274 
[1] "NAA35 MUTATION ANALYSIS"
[1] 3
  NAA35 MUTATED NAA35 WILD-TYPE 
              4             285 
  NAA35 MUTATED NAA35 WILD-TYPE 
              4             285 
[1] "WWC1 MUTATION ANALYSIS"
[1] 3
  WWC1 MUTATED WWC1 WILD-TYPE 
            14            275 
  WWC1 MUTATED WWC1 WILD-TYPE 
            14            275 
[1] "DNAH7 MUTATION ANALYSIS"
[1] 3
  DNAH7 MUTATED DNAH7 WILD-TYPE 
             42             247 
  DNAH7 MUTATED DNAH7 WILD-TYPE 
             42             247 
[1] "ELK3 MUTATION ANALYSIS"
[1] 3
  ELK3 MUTATED ELK3 WILD-TYPE 
             6            283 
  ELK3 MUTATED ELK3 WILD-TYPE 
             6            283 
[1] "HIST1H1A MUTATION ANALYSIS"
[1] 3
  HIST1H1A MUTATED HIST1H1A WILD-TYPE 
                 5                284 
  HIST1H1A MUTATED HIST1H1A WILD-TYPE 
                 5                284 
[1] "ACSS2 MUTATION ANALYSIS"
[1] 3
  ACSS2 MUTATED ACSS2 WILD-TYPE 
              9             280 
  ACSS2 MUTATED ACSS2 WILD-TYPE 
              9             280 
[1] "ZBTB40 MUTATION ANALYSIS"
[1] 3
  ZBTB40 MUTATED ZBTB40 WILD-TYPE 
              10              279 
  ZBTB40 MUTATED ZBTB40 WILD-TYPE 
              10              279 
[1] "OSTALPHA MUTATION ANALYSIS"
[1] 3
  OSTALPHA MUTATED OSTALPHA WILD-TYPE 
                 3                286 
  OSTALPHA MUTATED OSTALPHA WILD-TYPE 
                 3                286 
[1] "PPARG MUTATION ANALYSIS"
[1] 3
  PPARG MUTATED PPARG WILD-TYPE 
              4             285 
  PPARG MUTATED PPARG WILD-TYPE 
              4             285 
[1] "MAPK15 MUTATION ANALYSIS"
[1] 3
  MAPK15 MUTATED MAPK15 WILD-TYPE 
               7              282 
  MAPK15 MUTATED MAPK15 WILD-TYPE 
               7              282 
[1] "CASKIN2 MUTATION ANALYSIS"
[1] 3
  CASKIN2 MUTATED CASKIN2 WILD-TYPE 
                9               280 
  CASKIN2 MUTATED CASKIN2 WILD-TYPE 
                9               280 
[1] "TRIM27 MUTATION ANALYSIS"
[1] 3
  TRIM27 MUTATED TRIM27 WILD-TYPE 
               5              284 
  TRIM27 MUTATED TRIM27 WILD-TYPE 
               5              284 
[1] "KYNU MUTATION ANALYSIS"
[1] 3
  KYNU MUTATED KYNU WILD-TYPE 
            10            279 
  KYNU MUTATED KYNU WILD-TYPE 
            10            279 
[1] "TM6SF1 MUTATION ANALYSIS"
[1] 3
  TM6SF1 MUTATED TM6SF1 WILD-TYPE 
               6              283 
  TM6SF1 MUTATED TM6SF1 WILD-TYPE 
               6              283 
[1] "WDTC1 MUTATION ANALYSIS"
[1] 3
  WDTC1 MUTATED WDTC1 WILD-TYPE 
             15             274 
  WDTC1 MUTATED WDTC1 WILD-TYPE 
             15             274 
[1] "NEK8 MUTATION ANALYSIS"
[1] 3
  NEK8 MUTATED NEK8 WILD-TYPE 
            11            278 
  NEK8 MUTATED NEK8 WILD-TYPE 
            11            278 
[1] "CCDC27 MUTATION ANALYSIS"
[1] 3
  CCDC27 MUTATED CCDC27 WILD-TYPE 
               6              283 
  CCDC27 MUTATED CCDC27 WILD-TYPE 
               6              283 
[1] "THYN1 MUTATION ANALYSIS"
[1] 3
  THYN1 MUTATED THYN1 WILD-TYPE 
              8             281 
  THYN1 MUTATED THYN1 WILD-TYPE 
              8             281 
[1] "TRIP11 MUTATION ANALYSIS"
[1] 3
  TRIP11 MUTATED TRIP11 WILD-TYPE 
              13              276 
  TRIP11 MUTATED TRIP11 WILD-TYPE 
              13              276 
[1] "KIAA0586 MUTATION ANALYSIS"
[1] 3
  KIAA0586 MUTATED KIAA0586 WILD-TYPE 
                10                279 
  KIAA0586 MUTATED KIAA0586 WILD-TYPE 
                10                279 
[1] "PPM1H MUTATION ANALYSIS"
[1] 3
  PPM1H MUTATED PPM1H WILD-TYPE 
              8             281 
  PPM1H MUTATED PPM1H WILD-TYPE 
              8             281 
[1] "COL20A1 MUTATION ANALYSIS"
[1] 3
  COL20A1 MUTATED COL20A1 WILD-TYPE 
               18               271 
  COL20A1 MUTATED COL20A1 WILD-TYPE 
               18               271 
[1] "KIF6 MUTATION ANALYSIS"
[1] 3
  KIF6 MUTATED KIF6 WILD-TYPE 
             7            282 
  KIF6 MUTATED KIF6 WILD-TYPE 
             7            282 
[1] "POMT1 MUTATION ANALYSIS"
[1] 3
  POMT1 MUTATED POMT1 WILD-TYPE 
             12             277 
  POMT1 MUTATED POMT1 WILD-TYPE 
             12             277 
[1] "MYO7A MUTATION ANALYSIS"
[1] 3
  MYO7A MUTATED MYO7A WILD-TYPE 
             15             274 
  MYO7A MUTATED MYO7A WILD-TYPE 
             15             274 
[1] "EPB41L5 MUTATION ANALYSIS"
[1] 3
  EPB41L5 MUTATED EPB41L5 WILD-TYPE 
                8               281 
  EPB41L5 MUTATED EPB41L5 WILD-TYPE 
                8               281 
[1] "MAGEE2 MUTATION ANALYSIS"
[1] 3
  MAGEE2 MUTATED MAGEE2 WILD-TYPE 
               8              281 
  MAGEE2 MUTATED MAGEE2 WILD-TYPE 
               8              281 
[1] "ARHGAP29 MUTATION ANALYSIS"
[1] 3
  ARHGAP29 MUTATED ARHGAP29 WILD-TYPE 
                 9                280 
  ARHGAP29 MUTATED ARHGAP29 WILD-TYPE 
                 9                280 
[1] "SLC23A3 MUTATION ANALYSIS"
[1] 3
  SLC23A3 MUTATED SLC23A3 WILD-TYPE 
                5               284 
  SLC23A3 MUTATED SLC23A3 WILD-TYPE 
                5               284 
[1] "WDR60 MUTATION ANALYSIS"
[1] 3
  WDR60 MUTATED WDR60 WILD-TYPE 
              8             281 
  WDR60 MUTATED WDR60 WILD-TYPE 
              8             281 
[1] "GCDH MUTATION ANALYSIS"
[1] 3
  GCDH MUTATED GCDH WILD-TYPE 
             8            281 
  GCDH MUTATED GCDH WILD-TYPE 
             8            281 
[1] "PLEKHH3 MUTATION ANALYSIS"
[1] 3
  PLEKHH3 MUTATED PLEKHH3 WILD-TYPE 
                9               280 
  PLEKHH3 MUTATED PLEKHH3 WILD-TYPE 
                9               280 
[1] "KRT222 MUTATION ANALYSIS"
[1] 3
  KRT222 MUTATED KRT222 WILD-TYPE 
               5              284 
  KRT222 MUTATED KRT222 WILD-TYPE 
               5              284 
[1] "MBL2 MUTATION ANALYSIS"
[1] 3
  MBL2 MUTATED MBL2 WILD-TYPE 
             4            285 
  MBL2 MUTATED MBL2 WILD-TYPE 
             4            285 
[1] "TSPYL5 MUTATION ANALYSIS"
[1] 3
  TSPYL5 MUTATED TSPYL5 WILD-TYPE 
               9              280 
  TSPYL5 MUTATED TSPYL5 WILD-TYPE 
               9              280 
[1] "COX8C MUTATION ANALYSIS"
[1] 3
  COX8C MUTATED COX8C WILD-TYPE 
              4             285 
  COX8C MUTATED COX8C WILD-TYPE 
              4             285 
[1] "SLC6A11 MUTATION ANALYSIS"
[1] 3
  SLC6A11 MUTATED SLC6A11 WILD-TYPE 
                7               282 
  SLC6A11 MUTATED SLC6A11 WILD-TYPE 
                7               282 
[1] "IKBKAP MUTATION ANALYSIS"
[1] 3
  IKBKAP MUTATED IKBKAP WILD-TYPE 
              13              276 
  IKBKAP MUTATED IKBKAP WILD-TYPE 
              13              276 
[1] "DDX50 MUTATION ANALYSIS"
[1] 3
  DDX50 MUTATED DDX50 WILD-TYPE 
             11             278 
  DDX50 MUTATED DDX50 WILD-TYPE 
             11             278 
[1] "CD3EAP MUTATION ANALYSIS"
[1] 3
  CD3EAP MUTATED CD3EAP WILD-TYPE 
               7              282 
  CD3EAP MUTATED CD3EAP WILD-TYPE 
               7              282 
[1] "NMNAT1 MUTATION ANALYSIS"
[1] 3
  NMNAT1 MUTATED NMNAT1 WILD-TYPE 
               3              286 
  NMNAT1 MUTATED NMNAT1 WILD-TYPE 
               3              286 
[1] "KIDINS220 MUTATION ANALYSIS"
[1] 3
  KIDINS220 MUTATED KIDINS220 WILD-TYPE 
                 16                 273 
  KIDINS220 MUTATED KIDINS220 WILD-TYPE 
                 16                 273 
[1] "TRIM46 MUTATION ANALYSIS"
[1] 3
  TRIM46 MUTATED TRIM46 WILD-TYPE 
              12              277 
  TRIM46 MUTATED TRIM46 WILD-TYPE 
              12              277 
[1] "GIGYF2 MUTATION ANALYSIS"
[1] 3
  GIGYF2 MUTATED GIGYF2 WILD-TYPE 
              11              278 
  GIGYF2 MUTATED GIGYF2 WILD-TYPE 
              11              278 
[1] "P2RX1 MUTATION ANALYSIS"
[1] 3
  P2RX1 MUTATED P2RX1 WILD-TYPE 
              3             286 
  P2RX1 MUTATED P2RX1 WILD-TYPE 
              3             286 
[1] "CSNK1G3 MUTATION ANALYSIS"
[1] 3
  CSNK1G3 MUTATED CSNK1G3 WILD-TYPE 
                7               282 
  CSNK1G3 MUTATED CSNK1G3 WILD-TYPE 
                7               282 
[1] "TIMP3 MUTATION ANALYSIS"
[1] 3
  TIMP3 MUTATED TIMP3 WILD-TYPE 
              6             283 
  TIMP3 MUTATED TIMP3 WILD-TYPE 
              6             283 
[1] "C10ORF120 MUTATION ANALYSIS"
[1] 3
  C10ORF120 MUTATED C10ORF120 WILD-TYPE 
                  5                 284 
  C10ORF120 MUTATED C10ORF120 WILD-TYPE 
                  5                 284 
[1] "PIK3R1 MUTATION ANALYSIS"
[1] 3
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              10              279 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              10              279 
[1] "DGKD MUTATION ANALYSIS"
[1] 3
  DGKD MUTATED DGKD WILD-TYPE 
             6            283 
  DGKD MUTATED DGKD WILD-TYPE 
             6            283 
[1] "RDBP MUTATION ANALYSIS"
[1] 3
  RDBP MUTATED RDBP WILD-TYPE 
             8            281 
  RDBP MUTATED RDBP WILD-TYPE 
             8            281 
[1] "LUC7L3 MUTATION ANALYSIS"
[1] 3
  LUC7L3 MUTATED LUC7L3 WILD-TYPE 
               6              283 
  LUC7L3 MUTATED LUC7L3 WILD-TYPE 
               6              283 
[1] "ROCK1 MUTATION ANALYSIS"
[1] 3
  ROCK1 MUTATED ROCK1 WILD-TYPE 
             16             273 
  ROCK1 MUTATED ROCK1 WILD-TYPE 
             16             273 
[1] "WWP2 MUTATION ANALYSIS"
[1] 3
  WWP2 MUTATED WWP2 WILD-TYPE 
            12            277 
  WWP2 MUTATED WWP2 WILD-TYPE 
            12            277 
[1] "STAT6 MUTATION ANALYSIS"
[1] 3
  STAT6 MUTATED STAT6 WILD-TYPE 
              3             286 
  STAT6 MUTATED STAT6 WILD-TYPE 
              3             286 
[1] "CELSR1 MUTATION ANALYSIS"
[1] 3
  CELSR1 MUTATED CELSR1 WILD-TYPE 
              35              254 
  CELSR1 MUTATED CELSR1 WILD-TYPE 
              35              254 
[1] "MACF1 MUTATION ANALYSIS"
[1] 3
  MACF1 MUTATED MACF1 WILD-TYPE 
             45             244 
  MACF1 MUTATED MACF1 WILD-TYPE 
             45             244 
[1] "DYRK1A MUTATION ANALYSIS"
[1] 3
  DYRK1A MUTATED DYRK1A WILD-TYPE 
               9              280 
  DYRK1A MUTATED DYRK1A WILD-TYPE 
               9              280 
[1] "TXLNG MUTATION ANALYSIS"
[1] 3
  TXLNG MUTATED TXLNG WILD-TYPE 
              7             282 
  TXLNG MUTATED TXLNG WILD-TYPE 
              7             282 
[1] "OR10J3 MUTATION ANALYSIS"
[1] 3
  OR10J3 MUTATED OR10J3 WILD-TYPE 
               8              281 
  OR10J3 MUTATED OR10J3 WILD-TYPE 
               8              281 
[1] "CDX2 MUTATION ANALYSIS"
[1] 3
  CDX2 MUTATED CDX2 WILD-TYPE 
             3            286 
  CDX2 MUTATED CDX2 WILD-TYPE 
             3            286 
[1] "ZMIZ1 MUTATION ANALYSIS"
[1] 3
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
             15             274 
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
             15             274 
[1] "MMP10 MUTATION ANALYSIS"
[1] 3
  MMP10 MUTATED MMP10 WILD-TYPE 
              8             281 
  MMP10 MUTATED MMP10 WILD-TYPE 
              8             281 
[1] "BCL2L14 MUTATION ANALYSIS"
[1] 3
  BCL2L14 MUTATED BCL2L14 WILD-TYPE 
                3               286 
  BCL2L14 MUTATED BCL2L14 WILD-TYPE 
                3               286 
[1] "HDAC4 MUTATION ANALYSIS"
[1] 3
  HDAC4 MUTATED HDAC4 WILD-TYPE 
             22             267 
  HDAC4 MUTATED HDAC4 WILD-TYPE 
             22             267 
[1] "CNTROB MUTATION ANALYSIS"
[1] 3
  CNTROB MUTATED CNTROB WILD-TYPE 
               7              282 
  CNTROB MUTATED CNTROB WILD-TYPE 
               7              282 
[1] "SP100 MUTATION ANALYSIS"
[1] 3
  SP100 MUTATED SP100 WILD-TYPE 
             15             274 
  SP100 MUTATED SP100 WILD-TYPE 
             15             274 
[1] "ZNF334 MUTATION ANALYSIS"
[1] 3
  ZNF334 MUTATED ZNF334 WILD-TYPE 
              12              277 
  ZNF334 MUTATED ZNF334 WILD-TYPE 
              12              277 
[1] "GABRD MUTATION ANALYSIS"
[1] 3
  GABRD MUTATED GABRD WILD-TYPE 
              6             283 
  GABRD MUTATED GABRD WILD-TYPE 
              6             283 
[1] "LENG1 MUTATION ANALYSIS"
[1] 3
  LENG1 MUTATED LENG1 WILD-TYPE 
              8             281 
  LENG1 MUTATED LENG1 WILD-TYPE 
              8             281 
[1] "TBC1D23 MUTATION ANALYSIS"
[1] 3
  TBC1D23 MUTATED TBC1D23 WILD-TYPE 
                4               285 
  TBC1D23 MUTATED TBC1D23 WILD-TYPE 
                4               285 
[1] "EPHA10 MUTATION ANALYSIS"
[1] 3
  EPHA10 MUTATED EPHA10 WILD-TYPE 
              13              276 
  EPHA10 MUTATED EPHA10 WILD-TYPE 
              13              276 
[1] "EHBP1 MUTATION ANALYSIS"
[1] 3
  EHBP1 MUTATED EHBP1 WILD-TYPE 
              9             280 
  EHBP1 MUTATED EHBP1 WILD-TYPE 
              9             280 
[1] "NUAK1 MUTATION ANALYSIS"
[1] 3
  NUAK1 MUTATED NUAK1 WILD-TYPE 
             16             273 
  NUAK1 MUTATED NUAK1 WILD-TYPE 
             16             273 
[1] "IGHMBP2 MUTATION ANALYSIS"
[1] 3
  IGHMBP2 MUTATED IGHMBP2 WILD-TYPE 
               12               277 
  IGHMBP2 MUTATED IGHMBP2 WILD-TYPE 
               12               277 
[1] "PIK3C2G MUTATION ANALYSIS"
[1] 3
  PIK3C2G MUTATED PIK3C2G WILD-TYPE 
               10               279 
  PIK3C2G MUTATED PIK3C2G WILD-TYPE 
               10               279 
[1] "SLC2A12 MUTATION ANALYSIS"
[1] 3
  SLC2A12 MUTATED SLC2A12 WILD-TYPE 
                7               282 
  SLC2A12 MUTATED SLC2A12 WILD-TYPE 
                7               282 
[1] "ARID3A MUTATION ANALYSIS"
[1] 3
  ARID3A MUTATED ARID3A WILD-TYPE 
               6              283 
  ARID3A MUTATED ARID3A WILD-TYPE 
               6              283 
[1] "WSB2 MUTATION ANALYSIS"
[1] 3
  WSB2 MUTATED WSB2 WILD-TYPE 
             9            280 
  WSB2 MUTATED WSB2 WILD-TYPE 
             9            280 
[1] "SMAD7 MUTATION ANALYSIS"
[1] 3
  SMAD7 MUTATED SMAD7 WILD-TYPE 
              5             284 
  SMAD7 MUTATED SMAD7 WILD-TYPE 
              5             284 
[1] "ROBO2 MUTATION ANALYSIS"
[1] 3
  ROBO2 MUTATED ROBO2 WILD-TYPE 
             31             258 
  ROBO2 MUTATED ROBO2 WILD-TYPE 
             31             258 
[1] "GPATCH8 MUTATION ANALYSIS"
[1] 3
  GPATCH8 MUTATED GPATCH8 WILD-TYPE 
               23               266 
  GPATCH8 MUTATED GPATCH8 WILD-TYPE 
               23               266 
[1] "AFP MUTATION ANALYSIS"
[1] 3
  AFP MUTATED AFP WILD-TYPE 
            3           286 
  AFP MUTATED AFP WILD-TYPE 
            3           286 
[1] "CPD MUTATION ANALYSIS"
[1] 3
  CPD MUTATED CPD WILD-TYPE 
            9           280 
  CPD MUTATED CPD WILD-TYPE 
            9           280 
[1] "RFX5 MUTATION ANALYSIS"
[1] 3
  RFX5 MUTATED RFX5 WILD-TYPE 
            10            279 
  RFX5 MUTATED RFX5 WILD-TYPE 
            10            279 
[1] "FER MUTATION ANALYSIS"
[1] 3
  FER MUTATED FER WILD-TYPE 
           11           278 
  FER MUTATED FER WILD-TYPE 
           11           278 
[1] "SNRPA MUTATION ANALYSIS"
[1] 3
  SNRPA MUTATED SNRPA WILD-TYPE 
              8             281 
  SNRPA MUTATED SNRPA WILD-TYPE 
              8             281 
[1] "C2ORF43 MUTATION ANALYSIS"
[1] 3
  C2ORF43 MUTATED C2ORF43 WILD-TYPE 
                3               286 
  C2ORF43 MUTATED C2ORF43 WILD-TYPE 
                3               286 
[1] "TMEM109 MUTATION ANALYSIS"
[1] 3
  TMEM109 MUTATED TMEM109 WILD-TYPE 
                8               281 
  TMEM109 MUTATED TMEM109 WILD-TYPE 
                8               281 
[1] "SRRT MUTATION ANALYSIS"
[1] 3
  SRRT MUTATED SRRT WILD-TYPE 
            12            277 
  SRRT MUTATED SRRT WILD-TYPE 
            12            277 
[1] "CASP1 MUTATION ANALYSIS"
[1] 3
  CASP1 MUTATED CASP1 WILD-TYPE 
              4             285 
  CASP1 MUTATED CASP1 WILD-TYPE 
              4             285 
[1] "NOL6 MUTATION ANALYSIS"
[1] 3
  NOL6 MUTATED NOL6 WILD-TYPE 
            17            272 
  NOL6 MUTATED NOL6 WILD-TYPE 
            17            272 
[1] "AKR7A2 MUTATION ANALYSIS"
[1] 3
  AKR7A2 MUTATED AKR7A2 WILD-TYPE 
               8              281 
  AKR7A2 MUTATED AKR7A2 WILD-TYPE 
               8              281 
[1] "TNKS1BP1 MUTATION ANALYSIS"
[1] 3
  TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE 
                19                270 
  TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE 
                19                270 
[1] "CALCRL MUTATION ANALYSIS"
[1] 3
  CALCRL MUTATED CALCRL WILD-TYPE 
               8              281 
  CALCRL MUTATED CALCRL WILD-TYPE 
               8              281 
[1] "OSBPL2 MUTATION ANALYSIS"
[1] 3
  OSBPL2 MUTATED OSBPL2 WILD-TYPE 
               7              282 
  OSBPL2 MUTATED OSBPL2 WILD-TYPE 
               7              282 
[1] "KLHL14 MUTATION ANALYSIS"
[1] 3
  KLHL14 MUTATED KLHL14 WILD-TYPE 
              17              272 
  KLHL14 MUTATED KLHL14 WILD-TYPE 
              17              272 
[1] "USP28 MUTATION ANALYSIS"
[1] 3
  USP28 MUTATED USP28 WILD-TYPE 
             13             276 
  USP28 MUTATED USP28 WILD-TYPE 
             13             276 
[1] "C19ORF70 MUTATION ANALYSIS"
[1] 3
  C19ORF70 MUTATED C19ORF70 WILD-TYPE 
                 6                283 
  C19ORF70 MUTATED C19ORF70 WILD-TYPE 
                 6                283 
[1] "SLA MUTATION ANALYSIS"
[1] 3
  SLA MUTATED SLA WILD-TYPE 
            4           285 
  SLA MUTATED SLA WILD-TYPE 
            4           285 
[1] "FOXA3 MUTATION ANALYSIS"
[1] 3
  FOXA3 MUTATED FOXA3 WILD-TYPE 
              7             282 
  FOXA3 MUTATED FOXA3 WILD-TYPE 
              7             282 
[1] "CSNK1G1 MUTATION ANALYSIS"
[1] 3
  CSNK1G1 MUTATED CSNK1G1 WILD-TYPE 
                6               283 
  CSNK1G1 MUTATED CSNK1G1 WILD-TYPE 
                6               283 
[1] "SLC7A13 MUTATION ANALYSIS"
[1] 3
  SLC7A13 MUTATED SLC7A13 WILD-TYPE 
                9               280 
  SLC7A13 MUTATED SLC7A13 WILD-TYPE 
                9               280 
[1] "SPAG17 MUTATION ANALYSIS"
[1] 3
  SPAG17 MUTATED SPAG17 WILD-TYPE 
              22              267 
  SPAG17 MUTATED SPAG17 WILD-TYPE 
              22              267 
[1] "PDS5B MUTATION ANALYSIS"
[1] 3
  PDS5B MUTATED PDS5B WILD-TYPE 
             14             275 
  PDS5B MUTATED PDS5B WILD-TYPE 
             14             275 
[1] "TAC4 MUTATION ANALYSIS"
[1] 3
  TAC4 MUTATED TAC4 WILD-TYPE 
             3            286 
  TAC4 MUTATED TAC4 WILD-TYPE 
             3            286 
[1] "PFAS MUTATION ANALYSIS"
[1] 3
  PFAS MUTATED PFAS WILD-TYPE 
             9            280 
  PFAS MUTATED PFAS WILD-TYPE 
             9            280 
[1] "ITGAV MUTATION ANALYSIS"
[1] 3
  ITGAV MUTATED ITGAV WILD-TYPE 
             13             276 
  ITGAV MUTATED ITGAV WILD-TYPE 
             13             276 
[1] "FBXO32 MUTATION ANALYSIS"
[1] 3
  FBXO32 MUTATED FBXO32 WILD-TYPE 
               7              282 
  FBXO32 MUTATED FBXO32 WILD-TYPE 
               7              282 
[1] "CHST9 MUTATION ANALYSIS"
[1] 3
  CHST9 MUTATED CHST9 WILD-TYPE 
              6             283 
  CHST9 MUTATED CHST9 WILD-TYPE 
              6             283 
[1] "STK36 MUTATION ANALYSIS"
[1] 3
  STK36 MUTATED STK36 WILD-TYPE 
             10             279 
  STK36 MUTATED STK36 WILD-TYPE 
             10             279 
[1] "CCDC25 MUTATION ANALYSIS"
[1] 3
  CCDC25 MUTATED CCDC25 WILD-TYPE 
               3              286 
  CCDC25 MUTATED CCDC25 WILD-TYPE 
               3              286 
[1] "TOP1 MUTATION ANALYSIS"
[1] 3
  TOP1 MUTATED TOP1 WILD-TYPE 
            10            279 
  TOP1 MUTATED TOP1 WILD-TYPE 
            10            279 
[1] "THBS1 MUTATION ANALYSIS"
[1] 3
  THBS1 MUTATED THBS1 WILD-TYPE 
             15             274 
  THBS1 MUTATED THBS1 WILD-TYPE 
             15             274 
[1] "PGBD2 MUTATION ANALYSIS"
[1] 3
  PGBD2 MUTATED PGBD2 WILD-TYPE 
              3             286 
  PGBD2 MUTATED PGBD2 WILD-TYPE 
              3             286 
[1] "SH3D19 MUTATION ANALYSIS"
[1] 3
  SH3D19 MUTATED SH3D19 WILD-TYPE 
               3              286 
  SH3D19 MUTATED SH3D19 WILD-TYPE 
               3              286 
[1] "CCDC30 MUTATION ANALYSIS"
[1] 3
  CCDC30 MUTATED CCDC30 WILD-TYPE 
               7              282 
  CCDC30 MUTATED CCDC30 WILD-TYPE 
               7              282 
[1] "C11ORF63 MUTATION ANALYSIS"
[1] 3
  C11ORF63 MUTATED C11ORF63 WILD-TYPE 
                15                274 
  C11ORF63 MUTATED C11ORF63 WILD-TYPE 
                15                274 
[1] "LRRC52 MUTATION ANALYSIS"
[1] 3
  LRRC52 MUTATED LRRC52 WILD-TYPE 
               9              280 
  LRRC52 MUTATED LRRC52 WILD-TYPE 
               9              280 
[1] "TOX MUTATION ANALYSIS"
[1] 3
  TOX MUTATED TOX WILD-TYPE 
            9           280 
  TOX MUTATED TOX WILD-TYPE 
            9           280 
[1] "FBXO34 MUTATION ANALYSIS"
[1] 3
  FBXO34 MUTATED FBXO34 WILD-TYPE 
               7              282 
  FBXO34 MUTATED FBXO34 WILD-TYPE 
               7              282 
[1] "CAB39L MUTATION ANALYSIS"
[1] 3
  CAB39L MUTATED CAB39L WILD-TYPE 
               8              281 
  CAB39L MUTATED CAB39L WILD-TYPE 
               8              281 
[1] "VASH1 MUTATION ANALYSIS"
[1] 3
  VASH1 MUTATED VASH1 WILD-TYPE 
              7             282 
  VASH1 MUTATED VASH1 WILD-TYPE 
              7             282 
[1] "HECA MUTATION ANALYSIS"
[1] 3
  HECA MUTATED HECA WILD-TYPE 
            12            277 
  HECA MUTATED HECA WILD-TYPE 
            12            277 
[1] "TMEM39A MUTATION ANALYSIS"
[1] 3
  TMEM39A MUTATED TMEM39A WILD-TYPE 
                8               281 
  TMEM39A MUTATED TMEM39A WILD-TYPE 
                8               281 
[1] "BRMS1 MUTATION ANALYSIS"
[1] 3
  BRMS1 MUTATED BRMS1 WILD-TYPE 
              6             283 
  BRMS1 MUTATED BRMS1 WILD-TYPE 
              6             283 
[1] "SPTLC3 MUTATION ANALYSIS"
[1] 3
  SPTLC3 MUTATED SPTLC3 WILD-TYPE 
              12              277 
  SPTLC3 MUTATED SPTLC3 WILD-TYPE 
              12              277 
[1] "CLCA4 MUTATION ANALYSIS"
[1] 3
  CLCA4 MUTATED CLCA4 WILD-TYPE 
             11             278 
  CLCA4 MUTATED CLCA4 WILD-TYPE 
             11             278 
[1] "DENND1C MUTATION ANALYSIS"
[1] 3
  DENND1C MUTATED DENND1C WILD-TYPE 
                7               282 
  DENND1C MUTATED DENND1C WILD-TYPE 
                7               282 
[1] "OR4M2 MUTATION ANALYSIS"
[1] 3
  OR4M2 MUTATED OR4M2 WILD-TYPE 
             12             277 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
             12             277 
[1] "USP13 MUTATION ANALYSIS"
[1] 3
  USP13 MUTATED USP13 WILD-TYPE 
             11             278 
  USP13 MUTATED USP13 WILD-TYPE 
             11             278 
[1] "WNT9A MUTATION ANALYSIS"
[1] 3
  WNT9A MUTATED WNT9A WILD-TYPE 
              8             281 
  WNT9A MUTATED WNT9A WILD-TYPE 
              8             281 
[1] "MAGI2 MUTATION ANALYSIS"
[1] 3
  MAGI2 MUTATED MAGI2 WILD-TYPE 
             26             263 
  MAGI2 MUTATED MAGI2 WILD-TYPE 
             26             263 
[1] "C10ORF54 MUTATION ANALYSIS"
[1] 3
  C10ORF54 MUTATED C10ORF54 WILD-TYPE 
                 3                286 
  C10ORF54 MUTATED C10ORF54 WILD-TYPE 
                 3                286 
[1] "SETD2 MUTATION ANALYSIS"
[1] 3
  SETD2 MUTATED SETD2 WILD-TYPE 
             15             274 
  SETD2 MUTATED SETD2 WILD-TYPE 
             15             274 
[1] "APOA1BP MUTATION ANALYSIS"
[1] 3
  APOA1BP MUTATED APOA1BP WILD-TYPE 
                6               283 
  APOA1BP MUTATED APOA1BP WILD-TYPE 
                6               283 
[1] "TRPV2 MUTATION ANALYSIS"
[1] 3
  TRPV2 MUTATED TRPV2 WILD-TYPE 
             10             279 
  TRPV2 MUTATED TRPV2 WILD-TYPE 
             10             279 
[1] "PA2G4 MUTATION ANALYSIS"
[1] 3
  PA2G4 MUTATED PA2G4 WILD-TYPE 
              4             285 
  PA2G4 MUTATED PA2G4 WILD-TYPE 
              4             285 
[1] "EEA1 MUTATION ANALYSIS"
[1] 3
  EEA1 MUTATED EEA1 WILD-TYPE 
            12            277 
  EEA1 MUTATED EEA1 WILD-TYPE 
            12            277 
[1] "BCKDHA MUTATION ANALYSIS"
[1] 3
  BCKDHA MUTATED BCKDHA WILD-TYPE 
               9              280 
  BCKDHA MUTATED BCKDHA WILD-TYPE 
               9              280 
[1] "RGS12 MUTATION ANALYSIS"
[1] 3
  RGS12 MUTATED RGS12 WILD-TYPE 
             23             266 
  RGS12 MUTATED RGS12 WILD-TYPE 
             23             266 
[1] "DISP2 MUTATION ANALYSIS"
[1] 3
  DISP2 MUTATED DISP2 WILD-TYPE 
             15             274 
  DISP2 MUTATED DISP2 WILD-TYPE 
             15             274 
[1] "ZNF711 MUTATION ANALYSIS"
[1] 3
  ZNF711 MUTATED ZNF711 WILD-TYPE 
              13              276 
  ZNF711 MUTATED ZNF711 WILD-TYPE 
              13              276 
[1] "MAN1C1 MUTATION ANALYSIS"
[1] 3
  MAN1C1 MUTATED MAN1C1 WILD-TYPE 
               8              281 
  MAN1C1 MUTATED MAN1C1 WILD-TYPE 
               8              281 
[1] "PHKG2 MUTATION ANALYSIS"
[1] 3
  PHKG2 MUTATED PHKG2 WILD-TYPE 
             12             277 
  PHKG2 MUTATED PHKG2 WILD-TYPE 
             12             277 
[1] "PCCA MUTATION ANALYSIS"
[1] 3
  PCCA MUTATED PCCA WILD-TYPE 
             8            281 
  PCCA MUTATED PCCA WILD-TYPE 
             8            281 
[1] "KDM3B MUTATION ANALYSIS"
[1] 3
  KDM3B MUTATED KDM3B WILD-TYPE 
             17             272 
  KDM3B MUTATED KDM3B WILD-TYPE 
             17             272 
[1] "FOXJ1 MUTATION ANALYSIS"
[1] 3
  FOXJ1 MUTATED FOXJ1 WILD-TYPE 
              5             284 
  FOXJ1 MUTATED FOXJ1 WILD-TYPE 
              5             284 
[1] "GIPC3 MUTATION ANALYSIS"
[1] 3
  GIPC3 MUTATED GIPC3 WILD-TYPE 
              6             283 
  GIPC3 MUTATED GIPC3 WILD-TYPE 
              6             283 
[1] "EML3 MUTATION ANALYSIS"
[1] 3
  EML3 MUTATED EML3 WILD-TYPE 
            10            279 
  EML3 MUTATED EML3 WILD-TYPE 
            10            279 
[1] "DHX29 MUTATION ANALYSIS"
[1] 3
  DHX29 MUTATED DHX29 WILD-TYPE 
             10             279 
  DHX29 MUTATED DHX29 WILD-TYPE 
             10             279 
[1] "TH1L MUTATION ANALYSIS"
[1] 3
  TH1L MUTATED TH1L WILD-TYPE 
            11            278 
  TH1L MUTATED TH1L WILD-TYPE 
            11            278 
[1] "PDE1B MUTATION ANALYSIS"
[1] 3
  PDE1B MUTATED PDE1B WILD-TYPE 
              6             283 
  PDE1B MUTATED PDE1B WILD-TYPE 
              6             283 
[1] "C14ORF102 MUTATION ANALYSIS"
[1] 3
  C14ORF102 MUTATED C14ORF102 WILD-TYPE 
                 14                 275 
  C14ORF102 MUTATED C14ORF102 WILD-TYPE 
                 14                 275 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 289 columns.

Variable 1:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 289 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       61     28     17     24      6
  TP53 WILD-TYPE     18     98     10     19      6
D1V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           61             18
  CLUS_2           28             98
  CLUS_3           17             10
  CLUS_4           24             19
  CLUS_5            6              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       53     38      7     22
  TP53 WILD-TYPE     18     38     27     41
D1V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           53             18
  CLUS_2           38             38
  CLUS_3            7             27
  CLUS_4           22             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED        9     36     23     26     24
  TP53 WILD-TYPE      7     26     28     39     31
D1V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            9              7
  CLUS_2           36             26
  CLUS_3           23             28
  CLUS_4           26             39
  CLUS_5           24             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       49     21     25     23
  TP53 WILD-TYPE     49     23     25     34
D1V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           49             49
  CLUS_2           21             23
  CLUS_3           25             25
  CLUS_4           23             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       24     16     15     19     44
  TP53 WILD-TYPE     38     43     25     18     15
D1V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           24             38
  CLUS_2           16             43
  CLUS_3           15             25
  CLUS_4           19             18
  CLUS_5           44             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       55     17     46
  TP53 WILD-TYPE     51     37     51
D1V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           55             51
  CLUS_2           17             37
  CLUS_3           46             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       54     34     50
  TP53 WILD-TYPE     69     61     21
D1V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           54             69
  CLUS_2           34             61
  CLUS_3           50             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       65     21     52
  TP53 WILD-TYPE     92     42     17
D1V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           65             92
  CLUS_2           21             42
  CLUS_3           52             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TP53 MUTATED       23      7     28     20      9     19
  TP53 WILD-TYPE     10     12     31     19      7     26
D1V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           23             10
  CLUS_2            7             12
  CLUS_3           28             31
  CLUS_4           20             19
  CLUS_5            9              7
  CLUS_6           19             26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TP53 MUTATED       30     12     12     20      7     25
  TP53 WILD-TYPE     17     27     23     12     16     10
D1V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           30             17
  CLUS_2           12             27
  CLUS_3           12             23
  CLUS_4           20             12
  CLUS_5            7             16
  CLUS_6           25             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = ARID1A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED        3     64      8     11      3
  ARID1A WILD-TYPE     76     62     19     32      9
D2V1, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              3               76
  CLUS_2             64               62
  CLUS_3              8               19
  CLUS_4             11               32
  CLUS_5              3                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        8     34     20     12
  ARID1A WILD-TYPE     63     42     14     51
D2V2, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              8               63
  CLUS_2             34               42
  CLUS_3             20               14
  CLUS_4             12               51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED        3     27     16     12     19
  ARID1A WILD-TYPE     13     35     35     53     36
D2V3, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              3               13
  CLUS_2             27               35
  CLUS_3             16               35
  CLUS_4             12               53
  CLUS_5             19               36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED       20     25     19     13
  ARID1A WILD-TYPE     78     19     31     44
D2V4, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             20               78
  CLUS_2             25               19
  CLUS_3             19               31
  CLUS_4             13               44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED       38     19     12      9      4
  ARID1A WILD-TYPE     24     40     28     28     55
D2V5, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             38               24
  CLUS_2             19               40
  CLUS_3             12               28
  CLUS_4              9               28
  CLUS_5              4               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       28     11     43
  ARID1A WILD-TYPE     78     43     54
D2V6, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             28               78
  CLUS_2             11               43
  CLUS_3             43               54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       58     22     10
  ARID1A WILD-TYPE     65     73     61
D2V7, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             58               65
  CLUS_2             22               73
  CLUS_3             10               61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       63     17     10
  ARID1A WILD-TYPE     94     46     59
D2V8, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             63               94
  CLUS_2             17               46
  CLUS_3             10               59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARID1A MUTATED        7      8     21     13      2     10
  ARID1A WILD-TYPE     26     11     38     26     14     35
D2V9, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              7               26
  CLUS_2              8               11
  CLUS_3             21               38
  CLUS_4             13               26
  CLUS_5              2               14
  CLUS_6             10               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARID1A MUTATED       18      7     16      4     10      6
  ARID1A WILD-TYPE     29     32     19     28     13     29
D2V10, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             18               29
  CLUS_2              7               32
  CLUS_3             16               19
  CLUS_4              4               28
  CLUS_5             10               13
  CLUS_6              6               29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = RNF43 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF43 MUTATED        1     37      5      3      2
  RNF43 WILD-TYPE     78     89     22     40     10
D3V1, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             1              78
  CLUS_2            37              89
  CLUS_3             5              22
  CLUS_4             3              40
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF43 MUTATED        1     27      6      3
  RNF43 WILD-TYPE     70     49     28     60
D3V2, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             1              70
  CLUS_2            27              49
  CLUS_3             6              28
  CLUS_4             3              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF43 MUTATED        3     19     10      3      7
  RNF43 WILD-TYPE     13     43     41     62     48
D3V3, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             3              13
  CLUS_2            19              43
  CLUS_3            10              41
  CLUS_4             3              62
  CLUS_5             7              48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF43 MUTATED       10     18     10      4
  RNF43 WILD-TYPE     88     26     40     53
D3V4, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1            10              88
  CLUS_2            18              26
  CLUS_3            10              40
  CLUS_4             4              53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF43 MUTATED       21      2      4     12      1
  RNF43 WILD-TYPE     41     57     36     25     58
D3V5, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1            21              41
  CLUS_2             2              57
  CLUS_3             4              36
  CLUS_4            12              25
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED        5      2     33
  RNF43 WILD-TYPE    101     52     64
D3V6, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             5             101
  CLUS_2             2              52
  CLUS_3            33              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED       39      6      4
  RNF43 WILD-TYPE     84     89     67
D3V7, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1            39              84
  CLUS_2             6              89
  CLUS_3             4              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED       44      4      1
  RNF43 WILD-TYPE    113     59     68
D3V8, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1            44             113
  CLUS_2             4              59
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RNF43 MUTATED        5      6     10     10      0      1
  RNF43 WILD-TYPE     28     13     49     29     16     44
D3V9, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             5              28
  CLUS_2             6              13
  CLUS_3            10              49
  CLUS_4            10              29
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RNF43 MUTATED       15      1      6      3      7      0
  RNF43 WILD-TYPE     32     38     29     29     16     35
D3V10, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1            15              32
  CLUS_2             1              38
  CLUS_3             6              29
  CLUS_4             3              29
  CLUS_5             7              16
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = MLL4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL4 MUTATED        1     30      2      2      2
  MLL4 WILD-TYPE     78     96     25     41     10
D4V1, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            1             78
  CLUS_2           30             96
  CLUS_3            2             25
  CLUS_4            2             41
  CLUS_5            2             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL4 MUTATED        2     22      5      1
  MLL4 WILD-TYPE     69     54     29     62
D4V2, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            2             69
  CLUS_2           22             54
  CLUS_3            5             29
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL4 MUTATED        2     12      8      3      8
  MLL4 WILD-TYPE     14     50     43     62     47
D4V3, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            2             14
  CLUS_2           12             50
  CLUS_3            8             43
  CLUS_4            3             62
  CLUS_5            8             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL4 MUTATED        8     13      8      4
  MLL4 WILD-TYPE     90     31     42     53
D4V4, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            8             90
  CLUS_2           13             31
  CLUS_3            8             42
  CLUS_4            4             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL4 MUTATED       17      4      4      9      1
  MLL4 WILD-TYPE     45     55     36     28     58
D4V5, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1           17             45
  CLUS_2            4             55
  CLUS_3            4             36
  CLUS_4            9             28
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED        5      2     28
  MLL4 WILD-TYPE    101     52     69
D4V6, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            5            101
  CLUS_2            2             52
  CLUS_3           28             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED       30      4      4
  MLL4 WILD-TYPE     93     91     67
D4V7, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1           30             93
  CLUS_2            4             91
  CLUS_3            4             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED       32      2      4
  MLL4 WILD-TYPE    125     61     65
D4V8, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1           32            125
  CLUS_2            2             61
  CLUS_3            4             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLL4 MUTATED        3      6     10      6      0      2
  MLL4 WILD-TYPE     30     13     49     33     16     43
D4V9, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            6             13
  CLUS_3           10             49
  CLUS_4            6             33
  CLUS_5            0             16
  CLUS_6            2             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLL4 MUTATED       13      1      7      1      4      1
  MLL4 WILD-TYPE     34     38     28     31     19     34
D4V10, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1           13             34
  CLUS_2            1             38
  CLUS_3            7             28
  CLUS_4            1             31
  CLUS_5            4             19
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = XYLT2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XYLT2 MUTATED        1     25      1      3      1
  XYLT2 WILD-TYPE     78    101     26     40     11
D5V1, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1             1              78
  CLUS_2            25             101
  CLUS_3             1              26
  CLUS_4             3              40
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XYLT2 MUTATED        2     22      5      1
  XYLT2 WILD-TYPE     69     54     29     62
D5V2, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1             2              69
  CLUS_2            22              54
  CLUS_3             5              29
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XYLT2 MUTATED        0     12      8      1      6
  XYLT2 WILD-TYPE     16     50     43     64     49
D5V3, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1             0              16
  CLUS_2            12              50
  CLUS_3             8              43
  CLUS_4             1              64
  CLUS_5             6              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XYLT2 MUTATED        5     12      8      2
  XYLT2 WILD-TYPE     93     32     42     55
D5V4, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1             5              93
  CLUS_2            12              32
  CLUS_3             8              42
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XYLT2 MUTATED       16      3      2      7      1
  XYLT2 WILD-TYPE     46     56     38     30     58
D5V5, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1            16              46
  CLUS_2             3              56
  CLUS_3             2              38
  CLUS_4             7              30
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  XYLT2 MUTATED        5      3     21
  XYLT2 WILD-TYPE    101     51     76
D5V6, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1             5             101
  CLUS_2             3              51
  CLUS_3            21              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  XYLT2 MUTATED       23      5      4
  XYLT2 WILD-TYPE    100     90     67
D5V7, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1            23             100
  CLUS_2             5              90
  CLUS_3             4              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  XYLT2 MUTATED       28      3      1
  XYLT2 WILD-TYPE    129     60     68
D5V8, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1            28             129
  CLUS_2             3              60
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XYLT2 MUTATED        3      3      9     10      0      1
  XYLT2 WILD-TYPE     30     16     50     29     16     44
D5V9, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             3              16
  CLUS_3             9              50
  CLUS_4            10              29
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XYLT2 MUTATED       11      1      5      2      6      1
  XYLT2 WILD-TYPE     36     38     30     30     17     34
D5V10, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1            11              36
  CLUS_2             1              38
  CLUS_3             5              30
  CLUS_4             2              30
  CLUS_5             6              17
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = LARP4B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP4B MUTATED        1     22      2      1      1
  LARP4B WILD-TYPE     78    104     25     42     11
D6V1, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              1               78
  CLUS_2             22              104
  CLUS_3              2               25
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP4B MUTATED        2     16      0      1
  LARP4B WILD-TYPE     69     60     34     62
D6V2, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              2               69
  CLUS_2             16               60
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP4B MUTATED        1      9      5      1      8
  LARP4B WILD-TYPE     15     53     46     64     47
D6V3, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              1               15
  CLUS_2              9               53
  CLUS_3              5               46
  CLUS_4              1               64
  CLUS_5              8               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP4B MUTATED        5     12      6      1
  LARP4B WILD-TYPE     93     32     44     56
D6V4, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              5               93
  CLUS_2             12               32
  CLUS_3              6               44
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP4B MUTATED       11      3      2      6      1
  LARP4B WILD-TYPE     51     56     38     31     58
D6V5, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1             11               51
  CLUS_2              3               56
  CLUS_3              2               38
  CLUS_4              6               31
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LARP4B MUTATED        6      1     16
  LARP4B WILD-TYPE    100     53     81
D6V6, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              6              100
  CLUS_2              1               53
  CLUS_3             16               81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LARP4B MUTATED       21      4      2
  LARP4B WILD-TYPE    102     91     69
D6V7, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1             21              102
  CLUS_2              4               91
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LARP4B MUTATED       24      2      1
  LARP4B WILD-TYPE    133     61     68
D6V8, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1             24              133
  CLUS_2              2               61
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LARP4B MUTATED        5      3      6      4      0      1
  LARP4B WILD-TYPE     28     16     53     35     16     44
D6V9, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              5               28
  CLUS_2              3               16
  CLUS_3              6               53
  CLUS_4              4               35
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LARP4B MUTATED        9      1      4      2      2      1
  LARP4B WILD-TYPE     38     38     31     30     21     34
D6V10, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              9               38
  CLUS_2              1               38
  CLUS_3              4               31
  CLUS_4              2               30
  CLUS_5              2               21
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = BZRAP1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BZRAP1 MUTATED        8     28      4      6      0
  BZRAP1 WILD-TYPE     71     98     23     37     12
D7V1, multiclass
        clus
vv       BZRAP1 MUTATED BZRAP1 WILD-TYPE
  CLUS_1              8               71
  CLUS_2             28               98
  CLUS_3              4               23
  CLUS_4              6               37
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BZRAP1 MUTATED       10     11     10     12
  BZRAP1 WILD-TYPE     61     65     24     51
D7V2, multiclass
        clus
vv       BZRAP1 MUTATED BZRAP1 WILD-TYPE
  CLUS_1             10               61
  CLUS_2             11               65
  CLUS_3             10               24
  CLUS_4             12               51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BZRAP1 MUTATED        2      8      6      9     11
  BZRAP1 WILD-TYPE     14     54     45     56     44
D7V3, multiclass
        clus
vv       BZRAP1 MUTATED BZRAP1 WILD-TYPE
  CLUS_1              2               14
  CLUS_2              8               54
  CLUS_3              6               45
  CLUS_4              9               56
  CLUS_5             11               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BZRAP1 MUTATED       13      7      9      7
  BZRAP1 WILD-TYPE     85     37     41     50
D7V4, multiclass
        clus
vv       BZRAP1 MUTATED BZRAP1 WILD-TYPE
  CLUS_1             13               85
  CLUS_2              7               37
  CLUS_3              9               41
  CLUS_4              7               50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BZRAP1 MUTATED       17     10      6      3      5
  BZRAP1 WILD-TYPE     45     49     34     34     54
D7V5, multiclass
        clus
vv       BZRAP1 MUTATED BZRAP1 WILD-TYPE
  CLUS_1             17               45
  CLUS_2             10               49
  CLUS_3              6               34
  CLUS_4              3               34
  CLUS_5              5               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BZRAP1 MUTATED       19      9     13
  BZRAP1 WILD-TYPE     87     45     84
D7V6, multiclass
        clus
vv       BZRAP1 MUTATED BZRAP1 WILD-TYPE
  CLUS_1             19               87
  CLUS_2              9               45
  CLUS_3             13               84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BZRAP1 MUTATED       21     15     10
  BZRAP1 WILD-TYPE    102     80     61
D7V7, multiclass
        clus
vv       BZRAP1 MUTATED BZRAP1 WILD-TYPE
  CLUS_1             21              102
  CLUS_2             15               80
  CLUS_3             10               61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BZRAP1 MUTATED       28      8     10
  BZRAP1 WILD-TYPE    129     55     59
D7V8, multiclass
        clus
vv       BZRAP1 MUTATED BZRAP1 WILD-TYPE
  CLUS_1             28              129
  CLUS_2              8               55
  CLUS_3             10               59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BZRAP1 MUTATED        5      1      8     11      4      5
  BZRAP1 WILD-TYPE     28     18     51     28     12     40
D7V9, multiclass
        clus
vv       BZRAP1 MUTATED BZRAP1 WILD-TYPE
  CLUS_1              5               28
  CLUS_2              1               18
  CLUS_3              8               51
  CLUS_4             11               28
  CLUS_5              4               12
  CLUS_6              5               40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BZRAP1 MUTATED        4      5      4      4     10      7
  BZRAP1 WILD-TYPE     43     34     31     28     13     28
D7V10, multiclass
        clus
vv       BZRAP1 MUTATED BZRAP1 WILD-TYPE
  CLUS_1              4               43
  CLUS_2              5               34
  CLUS_3              4               31
  CLUS_4              4               28
  CLUS_5             10               13
  CLUS_6              7               28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = B2M MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B2M MUTATED        0     16      0      0      0
  B2M WILD-TYPE     79    110     27     43     12
D8V1, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           0            79
  CLUS_2          16           110
  CLUS_3           0            27
  CLUS_4           0            43
  CLUS_5           0            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B2M MUTATED        1     11      3      1
  B2M WILD-TYPE     70     65     31     62
D8V2, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           1            70
  CLUS_2          11            65
  CLUS_3           3            31
  CLUS_4           1            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B2M MUTATED        1      5      3      0      4
  B2M WILD-TYPE     15     57     48     65     51
D8V3, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           1            15
  CLUS_2           5            57
  CLUS_3           3            48
  CLUS_4           0            65
  CLUS_5           4            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B2M MUTATED        3      6      4      0
  B2M WILD-TYPE     95     38     46     57
D8V4, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           3            95
  CLUS_2           6            38
  CLUS_3           4            46
  CLUS_4           0            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B2M MUTATED       10      1      1      3      0
  B2M WILD-TYPE     52     58     39     34     59
D8V5, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1          10            52
  CLUS_2           1            58
  CLUS_3           1            39
  CLUS_4           3            34
  CLUS_5           0            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED        2      1     12
  B2M WILD-TYPE    104     53     85
D8V6, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           2           104
  CLUS_2           1            53
  CLUS_3          12            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED       13      3      1
  B2M WILD-TYPE    110     92     70
D8V7, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1          13           110
  CLUS_2           3            92
  CLUS_3           1            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED       15      2      0
  B2M WILD-TYPE    142     61     69
D8V8, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1          15           142
  CLUS_2           2            61
  CLUS_3           0            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  B2M MUTATED        2      2      6      5      0      1
  B2M WILD-TYPE     31     17     53     34     16     44
D8V9, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           2            31
  CLUS_2           2            17
  CLUS_3           6            53
  CLUS_4           5            34
  CLUS_5           0            16
  CLUS_6           1            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  B2M MUTATED        7      1      4      1      3      0
  B2M WILD-TYPE     40     38     31     31     20     35
D8V10, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           7            40
  CLUS_2           1            38
  CLUS_3           4            31
  CLUS_4           1            31
  CLUS_5           3            20
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = KRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRAS MUTATED        4     16      2      3      3
  KRAS WILD-TYPE     75    110     25     40      9
D9V1, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            4             75
  CLUS_2           16            110
  CLUS_3            2             25
  CLUS_4            3             40
  CLUS_5            3              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED        4     10      2      5
  KRAS WILD-TYPE     67     66     32     58
D9V2, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            4             67
  CLUS_2           10             66
  CLUS_3            2             32
  CLUS_4            5             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRAS MUTATED        1      7      5      8      5
  KRAS WILD-TYPE     15     55     46     57     50
D9V3, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            1             15
  CLUS_2            7             55
  CLUS_3            5             46
  CLUS_4            8             57
  CLUS_5            5             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED        7      9      4      6
  KRAS WILD-TYPE     91     35     46     51
D9V4, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            7             91
  CLUS_2            9             35
  CLUS_3            4             46
  CLUS_4            6             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRAS MUTATED       10      4      2      4      3
  KRAS WILD-TYPE     52     55     38     33     56
D9V5, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           10             52
  CLUS_2            4             55
  CLUS_3            2             38
  CLUS_4            4             33
  CLUS_5            3             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED        7      2     14
  KRAS WILD-TYPE     99     52     83
D9V6, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            7             99
  CLUS_2            2             52
  CLUS_3           14             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       17      6      5
  KRAS WILD-TYPE    106     89     66
D9V7, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           17            106
  CLUS_2            6             89
  CLUS_3            5             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       20      4      4
  KRAS WILD-TYPE    137     59     65
D9V8, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           20            137
  CLUS_2            4             59
  CLUS_3            4             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRAS MUTATED        4      1      3      3      2      4
  KRAS WILD-TYPE     29     18     56     36     14     41
D9V9, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            4             29
  CLUS_2            1             18
  CLUS_3            3             56
  CLUS_4            3             36
  CLUS_5            2             14
  CLUS_6            4             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRAS MUTATED        3      1      3      4      3      3
  KRAS WILD-TYPE     44     38     32     28     20     32
D9V10, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            3             44
  CLUS_2            1             38
  CLUS_3            3             32
  CLUS_4            4             28
  CLUS_5            3             20
  CLUS_6            3             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = HLA-B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-B MUTATED        0     16      3      1      0
  HLA-B WILD-TYPE     79    110     24     42     12
D10V1, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             0              79
  CLUS_2            16             110
  CLUS_3             3              24
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-B MUTATED        0      6      7      1
  HLA-B WILD-TYPE     71     70     27     62
D10V2, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             0              71
  CLUS_2             6              70
  CLUS_3             7              27
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-B MUTATED        2      8      3      0      6
  HLA-B WILD-TYPE     14     54     48     65     49
D10V3, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             2              14
  CLUS_2             8              54
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             6              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-B MUTATED        5      9      4      1
  HLA-B WILD-TYPE     93     35     46     56
D10V4, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             5              93
  CLUS_2             9              35
  CLUS_3             4              46
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-B MUTATED       10      0      3      5      0
  HLA-B WILD-TYPE     52     59     37     32     59
D10V5, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1            10              52
  CLUS_2             0              59
  CLUS_3             3              37
  CLUS_4             5              32
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED        6      0     12
  HLA-B WILD-TYPE    100     54     85
D10V6, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             6             100
  CLUS_2             0              54
  CLUS_3            12              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED       17      3      0
  HLA-B WILD-TYPE    106     92     71
D10V7, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1            17             106
  CLUS_2             3              92
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED       17      2      1
  HLA-B WILD-TYPE    140     61     68
D10V8, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1            17             140
  CLUS_2             2              61
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HLA-B MUTATED        0      1      7      3      0      1
  HLA-B WILD-TYPE     33     18     52     36     16     44
D10V9, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              18
  CLUS_3             7              52
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HLA-B MUTATED        2      1      5      0      4      0
  HLA-B WILD-TYPE     45     38     30     32     19     35
D10V10, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              38
  CLUS_3             5              30
  CLUS_4             0              32
  CLUS_5             4              19
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = GNG12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNG12 MUTATED        0      8      1      1      1
  GNG12 WILD-TYPE     79    118     26     42     11
D11V1, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             8             118
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNG12 MUTATED        0      4      2      1
  GNG12 WILD-TYPE     71     72     32     62
D11V2, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             4              72
  CLUS_3             2              32
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNG12 MUTATED        1      2      1      1      5
  GNG12 WILD-TYPE     15     60     50     64     50
D11V3, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              60
  CLUS_3             1              50
  CLUS_4             1              64
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNG12 MUTATED        2      6      0      2
  GNG12 WILD-TYPE     96     38     50     55
D11V4, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             6              38
  CLUS_3             0              50
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNG12 MUTATED        7      1      0      2      0
  GNG12 WILD-TYPE     55     58     40     35     59
D11V5, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             7              55
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNG12 MUTATED        3      0      7
  GNG12 WILD-TYPE    103     54     90
D11V6, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             7              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNG12 MUTATED       10      0      1
  GNG12 WILD-TYPE    113     95     70
D11V7, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1            10             113
  CLUS_2             0              95
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNG12 MUTATED       11      0      0
  GNG12 WILD-TYPE    146     63     69
D11V8, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1            11             146
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GNG12 MUTATED        1      1      3      2      0      0
  GNG12 WILD-TYPE     32     18     56     37     16     45
D11V9, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             3              56
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GNG12 MUTATED        3      0      2      0      2      0
  GNG12 WILD-TYPE     44     39     33     32     21     35
D11V10, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = PLEKHA6 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHA6 MUTATED        1     16      0      2      0
  PLEKHA6 WILD-TYPE     78    110     27     41     12
D12V1, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               1                78
  CLUS_2              16               110
  CLUS_3               0                27
  CLUS_4               2                41
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHA6 MUTATED        1     10      2      3
  PLEKHA6 WILD-TYPE     70     66     32     60
D12V2, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               1                70
  CLUS_2              10                66
  CLUS_3               2                32
  CLUS_4               3                60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHA6 MUTATED        1      7      3      3      5
  PLEKHA6 WILD-TYPE     15     55     48     62     50
D12V3, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               7                55
  CLUS_3               3                48
  CLUS_4               3                62
  CLUS_5               5                50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHA6 MUTATED        4      7      4      4
  PLEKHA6 WILD-TYPE     94     37     46     53
D12V4, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               4                94
  CLUS_2               7                37
  CLUS_3               4                46
  CLUS_4               4                53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHA6 MUTATED        8      3      1      4      1
  PLEKHA6 WILD-TYPE     54     56     39     33     58
D12V5, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               8                54
  CLUS_2               3                56
  CLUS_3               1                39
  CLUS_4               4                33
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHA6 MUTATED        6      2      9
  PLEKHA6 WILD-TYPE    100     52     88
D12V6, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               6               100
  CLUS_2               2                52
  CLUS_3               9                88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHA6 MUTATED       16      2      2
  PLEKHA6 WILD-TYPE    107     93     69
D12V7, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1              16               107
  CLUS_2               2                93
  CLUS_3               2                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHA6 MUTATED       16      1      3
  PLEKHA6 WILD-TYPE    141     62     66
D12V8, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1              16               141
  CLUS_2               1                62
  CLUS_3               3                66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLEKHA6 MUTATED        4      1      6      3      2      0
  PLEKHA6 WILD-TYPE     29     18     53     36     14     45
D12V9, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               4                29
  CLUS_2               1                18
  CLUS_3               6                53
  CLUS_4               3                36
  CLUS_5               2                14
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLEKHA6 MUTATED        5      0      5      2      3      1
  PLEKHA6 WILD-TYPE     42     39     30     30     20     34
D12V10, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               5                42
  CLUS_2               0                39
  CLUS_3               5                30
  CLUS_4               2                30
  CLUS_5               3                20
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = CDH1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH1 MUTATED        0     22      3      3      0
  CDH1 WILD-TYPE     79    104     24     40     12
D13V1, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            0             79
  CLUS_2           22            104
  CLUS_3            3             24
  CLUS_4            3             40
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH1 MUTATED        2      7      0     15
  CDH1 WILD-TYPE     69     69     34     48
D13V2, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            7             69
  CLUS_3            0             34
  CLUS_4           15             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH1 MUTATED        0      4      5     13      6
  CDH1 WILD-TYPE     16     58     46     52     49
D13V3, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            4             58
  CLUS_3            5             46
  CLUS_4           13             52
  CLUS_5            6             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH1 MUTATED        6      5      6     11
  CDH1 WILD-TYPE     92     39     44     46
D13V4, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            6             92
  CLUS_2            5             39
  CLUS_3            6             44
  CLUS_4           11             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH1 MUTATED        2     14      2      6      2
  CDH1 WILD-TYPE     60     45     38     31     57
D13V5, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            2             60
  CLUS_2           14             45
  CLUS_3            2             38
  CLUS_4            6             31
  CLUS_5            2             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED        4     14      8
  CDH1 WILD-TYPE    102     40     89
D13V6, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            4            102
  CLUS_2           14             40
  CLUS_3            8             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED       11     17      1
  CDH1 WILD-TYPE    112     78     70
D13V7, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1           11            112
  CLUS_2           17             78
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED       12     16      1
  CDH1 WILD-TYPE    145     47     68
D13V8, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1           12            145
  CLUS_2           16             47
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDH1 MUTATED        0      2      6      2      3     11
  CDH1 WILD-TYPE     33     17     53     37     13     34
D13V9, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            2             17
  CLUS_3            6             53
  CLUS_4            2             37
  CLUS_5            3             13
  CLUS_6           11             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDH1 MUTATED        2     11      5      2      3      1
  CDH1 WILD-TYPE     45     28     30     30     20     34
D13V10, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            2             45
  CLUS_2           11             28
  CLUS_3            5             30
  CLUS_4            2             30
  CLUS_5            3             20
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = RHOA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOA MUTATED        1     12      1      2      0
  RHOA WILD-TYPE     78    114     26     41     12
D14V1, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            1             78
  CLUS_2           12            114
  CLUS_3            1             26
  CLUS_4            2             41
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        2      4      2      6
  RHOA WILD-TYPE     69     72     32     57
D14V2, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            2             69
  CLUS_2            4             72
  CLUS_3            2             32
  CLUS_4            6             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOA MUTATED        0      4      3      3      4
  RHOA WILD-TYPE     16     58     48     62     51
D14V3, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            0             16
  CLUS_2            4             58
  CLUS_3            3             48
  CLUS_4            3             62
  CLUS_5            4             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        5      2      4      3
  RHOA WILD-TYPE     93     42     46     54
D14V4, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            5             93
  CLUS_2            2             42
  CLUS_3            4             46
  CLUS_4            3             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOA MUTATED        3      4      2      4      1
  RHOA WILD-TYPE     59     55     38     33     58
D14V5, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            3             59
  CLUS_2            4             55
  CLUS_3            2             38
  CLUS_4            4             33
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        4      4      6
  RHOA WILD-TYPE    102     50     91
D14V6, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            4            102
  CLUS_2            4             50
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        5     10      1
  RHOA WILD-TYPE    118     85     70
D14V7, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            5            118
  CLUS_2           10             85
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED       10      5      1
  RHOA WILD-TYPE    147     58     68
D14V8, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1           10            147
  CLUS_2            5             58
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RHOA MUTATED        0      2      3      0      1      5
  RHOA WILD-TYPE     33     17     56     39     15     40
D14V9, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            0             33
  CLUS_2            2             17
  CLUS_3            3             56
  CLUS_4            0             39
  CLUS_5            1             15
  CLUS_6            5             40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RHOA MUTATED        2      4      2      2      1      0
  RHOA WILD-TYPE     45     35     33     30     22     35
D14V10, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            2             45
  CLUS_2            4             35
  CLUS_3            2             33
  CLUS_4            2             30
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = LMAN1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LMAN1 MUTATED        0     16      2      1      0
  LMAN1 WILD-TYPE     79    110     25     42     12
D15V1, multiclass
        clus
vv       LMAN1 MUTATED LMAN1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2            16             110
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMAN1 MUTATED        1      9      3      2
  LMAN1 WILD-TYPE     70     67     31     61
D15V2, multiclass
        clus
vv       LMAN1 MUTATED LMAN1 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             9              67
  CLUS_3             3              31
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LMAN1 MUTATED        2      7      3      1      3
  LMAN1 WILD-TYPE     14     55     48     64     52
D15V3, multiclass
        clus
vv       LMAN1 MUTATED LMAN1 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             7              55
  CLUS_3             3              48
  CLUS_4             1              64
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMAN1 MUTATED        4      6      5      1
  LMAN1 WILD-TYPE     94     38     45     56
D15V4, multiclass
        clus
vv       LMAN1 MUTATED LMAN1 WILD-TYPE
  CLUS_1             4              94
  CLUS_2             6              38
  CLUS_3             5              45
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LMAN1 MUTATED        8      1      2      5      0
  LMAN1 WILD-TYPE     54     58     38     32     59
D15V5, multiclass
        clus
vv       LMAN1 MUTATED LMAN1 WILD-TYPE
  CLUS_1             8              54
  CLUS_2             1              58
  CLUS_3             2              38
  CLUS_4             5              32
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMAN1 MUTATED        3      0     13
  LMAN1 WILD-TYPE    103     54     84
D15V6, multiclass
        clus
vv       LMAN1 MUTATED LMAN1 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3            13              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMAN1 MUTATED       17      2      0
  LMAN1 WILD-TYPE    106     93     71
D15V7, multiclass
        clus
vv       LMAN1 MUTATED LMAN1 WILD-TYPE
  CLUS_1            17             106
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMAN1 MUTATED       17      2      0
  LMAN1 WILD-TYPE    140     61     69
D15V8, multiclass
        clus
vv       LMAN1 MUTATED LMAN1 WILD-TYPE
  CLUS_1            17             140
  CLUS_2             2              61
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LMAN1 MUTATED        3      4      4      1      0      1
  LMAN1 WILD-TYPE     30     15     55     38     16     44
D15V9, multiclass
        clus
vv       LMAN1 MUTATED LMAN1 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             4              15
  CLUS_3             4              55
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LMAN1 MUTATED        7      1      3      1      1      0
  LMAN1 WILD-TYPE     40     38     32     31     22     35
D15V10, multiclass
        clus
vv       LMAN1 MUTATED LMAN1 WILD-TYPE
  CLUS_1             7              40
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = KLF3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLF3 MUTATED        2     14      3      0      0
  KLF3 WILD-TYPE     77    112     24     43     12
D16V1, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            2             77
  CLUS_2           14            112
  CLUS_3            3             24
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF3 MUTATED        2     12      3      0
  KLF3 WILD-TYPE     69     64     31     63
D16V2, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            2             69
  CLUS_2           12             64
  CLUS_3            3             31
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLF3 MUTATED        0      4      3      1      7
  KLF3 WILD-TYPE     16     58     48     64     48
D16V3, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            4             58
  CLUS_3            3             48
  CLUS_4            1             64
  CLUS_5            7             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF3 MUTATED        2      8      2      3
  KLF3 WILD-TYPE     96     36     48     54
D16V4, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            8             36
  CLUS_3            2             48
  CLUS_4            3             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLF3 MUTATED        7      2      2      6      1
  KLF3 WILD-TYPE     55     57     38     31     58
D16V5, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            7             55
  CLUS_2            2             57
  CLUS_3            2             38
  CLUS_4            6             31
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLF3 MUTATED        2      3     13
  KLF3 WILD-TYPE    104     51     84
D16V6, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            3             51
  CLUS_3           13             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLF3 MUTATED       12      4      3
  KLF3 WILD-TYPE    111     91     68
D16V7, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1           12            111
  CLUS_2            4             91
  CLUS_3            3             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLF3 MUTATED       14      2      3
  KLF3 WILD-TYPE    143     61     66
D16V8, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1           14            143
  CLUS_2            2             61
  CLUS_3            3             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KLF3 MUTATED        2      4      3      5      0      3
  KLF3 WILD-TYPE     31     15     56     34     16     42
D16V9, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            4             15
  CLUS_3            3             56
  CLUS_4            5             34
  CLUS_5            0             16
  CLUS_6            3             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KLF3 MUTATED        5      2      3      4      2      1
  KLF3 WILD-TYPE     42     37     32     28     21     34
D16V10, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            5             42
  CLUS_2            2             37
  CLUS_3            3             32
  CLUS_4            4             28
  CLUS_5            2             21
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = PTEN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED        2     18      0      0      2
  PTEN WILD-TYPE     77    108     27     43     10
D17V1, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2             77
  CLUS_2           18            108
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            2             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        2      9      5      0
  PTEN WILD-TYPE     69     67     29     63
D17V2, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            2             69
  CLUS_2            9             67
  CLUS_3            5             29
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED        0      8      4      1      6
  PTEN WILD-TYPE     16     54     47     64     49
D17V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            0             16
  CLUS_2            8             54
  CLUS_3            4             47
  CLUS_4            1             64
  CLUS_5            6             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        7      7      4      1
  PTEN WILD-TYPE     91     37     46     56
D17V4, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            7             91
  CLUS_2            7             37
  CLUS_3            4             46
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED       14      2      2      3      1
  PTEN WILD-TYPE     48     57     38     34     58
D17V5, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           14             48
  CLUS_2            2             57
  CLUS_3            2             38
  CLUS_4            3             34
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED        8      3     11
  PTEN WILD-TYPE     98     51     86
D17V6, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            8             98
  CLUS_2            3             51
  CLUS_3           11             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED       16      6      1
  PTEN WILD-TYPE    107     89     70
D17V7, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           16            107
  CLUS_2            6             89
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED       19      3      1
  PTEN WILD-TYPE    138     60     68
D17V8, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           19            138
  CLUS_2            3             60
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTEN MUTATED        3      1      6      6      0      0
  PTEN WILD-TYPE     30     18     53     33     16     45
D17V9, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3             30
  CLUS_2            1             18
  CLUS_3            6             53
  CLUS_4            6             33
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTEN MUTATED        4      0      5      2      5      0
  PTEN WILD-TYPE     43     39     30     30     18     35
D17V10, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            4             43
  CLUS_2            0             39
  CLUS_3            5             30
  CLUS_4            2             30
  CLUS_5            5             18
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = MTG1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTG1 MUTATED        0      6      2      0      0
  MTG1 WILD-TYPE     79    120     25     43     12
D18V1, multiclass
        clus
vv       MTG1 MUTATED MTG1 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            6            120
  CLUS_3            2             25
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTG1 MUTATED        0      5      2      0
  MTG1 WILD-TYPE     71     71     32     63
D18V2, multiclass
        clus
vv       MTG1 MUTATED MTG1 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            5             71
  CLUS_3            2             32
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTG1 MUTATED        0      3      2      0      3
  MTG1 WILD-TYPE     16     59     49     65     52
D18V3, multiclass
        clus
vv       MTG1 MUTATED MTG1 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            3             59
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTG1 MUTATED        1      4      2      1
  MTG1 WILD-TYPE     97     40     48     56
D18V4, multiclass
        clus
vv       MTG1 MUTATED MTG1 WILD-TYPE
  CLUS_1            1             97
  CLUS_2            4             40
  CLUS_3            2             48
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTG1 MUTATED        3      1      1      2      0
  MTG1 WILD-TYPE     59     58     39     35     59
D18V5, multiclass
        clus
vv       MTG1 MUTATED MTG1 WILD-TYPE
  CLUS_1            3             59
  CLUS_2            1             58
  CLUS_3            1             39
  CLUS_4            2             35
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTG1 MUTATED        0      1      6
  MTG1 WILD-TYPE    106     53     91
D18V6, multiclass
        clus
vv       MTG1 MUTATED MTG1 WILD-TYPE
  CLUS_1            0            106
  CLUS_2            1             53
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTG1 MUTATED        6      1      2
  MTG1 WILD-TYPE    117     94     69
D18V7, multiclass
        clus
vv       MTG1 MUTATED MTG1 WILD-TYPE
  CLUS_1            6            117
  CLUS_2            1             94
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTG1 MUTATED        6      1      2
  MTG1 WILD-TYPE    151     62     67
D18V8, multiclass
        clus
vv       MTG1 MUTATED MTG1 WILD-TYPE
  CLUS_1            6            151
  CLUS_2            1             62
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MTG1 MUTATED        1      2      1      1      0      1
  MTG1 WILD-TYPE     32     17     58     38     16     44
D18V9, multiclass
        clus
vv       MTG1 MUTATED MTG1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            2             17
  CLUS_3            1             58
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MTG1 MUTATED        4      1      0      1      0      0
  MTG1 WILD-TYPE     43     38     35     31     23     35
D18V10, multiclass
        clus
vv       MTG1 MUTATED MTG1 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            1             38
  CLUS_3            0             35
  CLUS_4            1             31
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = FBXW7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXW7 MUTATED        2     23      1      1      0
  FBXW7 WILD-TYPE     77    103     26     42     12
D19V1, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             2              77
  CLUS_2            23             103
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED        2     17      1      3
  FBXW7 WILD-TYPE     69     59     33     60
D19V2, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             2              69
  CLUS_2            17              59
  CLUS_3             1              33
  CLUS_4             3              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXW7 MUTATED        1     10      6      2      5
  FBXW7 WILD-TYPE     15     52     45     63     50
D19V3, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             1              15
  CLUS_2            10              52
  CLUS_3             6              45
  CLUS_4             2              63
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED        5      9      7      3
  FBXW7 WILD-TYPE     93     35     43     54
D19V4, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             5              93
  CLUS_2             9              35
  CLUS_3             7              43
  CLUS_4             3              54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXW7 MUTATED       14      3      1      3      2
  FBXW7 WILD-TYPE     48     56     39     34     57
D19V5, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            14              48
  CLUS_2             3              56
  CLUS_3             1              39
  CLUS_4             3              34
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        5      4     14
  FBXW7 WILD-TYPE    101     50     83
D19V6, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             5             101
  CLUS_2             4              50
  CLUS_3            14              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED       18      4      5
  FBXW7 WILD-TYPE    105     91     66
D19V7, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            18             105
  CLUS_2             4              91
  CLUS_3             5              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED       20      4      3
  FBXW7 WILD-TYPE    137     59     66
D19V8, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            20             137
  CLUS_2             4              59
  CLUS_3             3              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBXW7 MUTATED        4      3      6      8      0      1
  FBXW7 WILD-TYPE     29     16     53     31     16     44
D19V9, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             4              29
  CLUS_2             3              16
  CLUS_3             6              53
  CLUS_4             8              31
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBXW7 MUTATED        8      1      5      4      2      2
  FBXW7 WILD-TYPE     39     38     30     28     21     33
D19V10, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             8              39
  CLUS_2             1              38
  CLUS_3             5              30
  CLUS_4             4              28
  CLUS_5             2              21
  CLUS_6             2              33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = SMAD4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD4 MUTATED        5     10      2      7      0
  SMAD4 WILD-TYPE     74    116     25     36     12
D20V1, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             5              74
  CLUS_2            10             116
  CLUS_3             2              25
  CLUS_4             7              36
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED        4      7      3      6
  SMAD4 WILD-TYPE     67     69     31     57
D20V2, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             7              69
  CLUS_3             3              31
  CLUS_4             6              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD4 MUTATED        0      8      1      8      3
  SMAD4 WILD-TYPE     16     54     50     57     52
D20V3, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             8              54
  CLUS_3             1              50
  CLUS_4             8              57
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED        3      5      4      8
  SMAD4 WILD-TYPE     95     39     46     49
D20V4, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             5              39
  CLUS_3             4              46
  CLUS_4             8              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD4 MUTATED        7      3      6      4      1
  SMAD4 WILD-TYPE     55     56     34     33     58
D20V5, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             7              55
  CLUS_2             3              56
  CLUS_3             6              34
  CLUS_4             4              33
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        8      3     10
  SMAD4 WILD-TYPE     98     51     87
D20V6, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             8              98
  CLUS_2             3              51
  CLUS_3            10              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED       12     11      1
  SMAD4 WILD-TYPE    111     84     70
D20V7, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            12             111
  CLUS_2            11              84
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED       15      6      3
  SMAD4 WILD-TYPE    142     57     66
D20V8, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            15             142
  CLUS_2             6              57
  CLUS_3             3              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMAD4 MUTATED        1      1      4      8      0      3
  SMAD4 WILD-TYPE     32     18     55     31     16     42
D20V9, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             4              55
  CLUS_4             8              31
  CLUS_5             0              16
  CLUS_6             3              42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMAD4 MUTATED        5      2      3      3      3      1
  SMAD4 WILD-TYPE     42     37     32     29     20     34
D20V10, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             5              42
  CLUS_2             2              37
  CLUS_3             3              32
  CLUS_4             3              29
  CLUS_5             3              20
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = ZBTB20 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB20 MUTATED        0     23      2      2      1
  ZBTB20 WILD-TYPE     79    103     25     41     11
D21V1, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              0               79
  CLUS_2             23              103
  CLUS_3              2               25
  CLUS_4              2               41
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        0     15      2      3
  ZBTB20 WILD-TYPE     71     61     32     60
D21V2, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              0               71
  CLUS_2             15               61
  CLUS_3              2               32
  CLUS_4              3               60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB20 MUTATED        2      8      5      2      6
  ZBTB20 WILD-TYPE     14     54     46     63     49
D21V3, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              2               14
  CLUS_2              8               54
  CLUS_3              5               46
  CLUS_4              2               63
  CLUS_5              6               49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        4     10      6      3
  ZBTB20 WILD-TYPE     94     34     44     54
D21V4, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              4               94
  CLUS_2             10               34
  CLUS_3              6               44
  CLUS_4              3               54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB20 MUTATED       14      1      2      9      0
  ZBTB20 WILD-TYPE     48     58     38     28     59
D21V5, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1             14               48
  CLUS_2              1               58
  CLUS_3              2               38
  CLUS_4              9               28
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED        5      0     21
  ZBTB20 WILD-TYPE    101     54     76
D21V6, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              5              101
  CLUS_2              0               54
  CLUS_3             21               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED       24      3      1
  ZBTB20 WILD-TYPE     99     92     70
D21V7, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1             24               99
  CLUS_2              3               92
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED       25      2      1
  ZBTB20 WILD-TYPE    132     61     68
D21V8, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1             25              132
  CLUS_2              2               61
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZBTB20 MUTATED        1      5      5      6      0      0
  ZBTB20 WILD-TYPE     32     14     54     33     16     45
D21V9, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              5               14
  CLUS_3              5               54
  CLUS_4              6               33
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZBTB20 MUTATED        7      0      4      2      4      0
  ZBTB20 WILD-TYPE     40     39     31     30     19     35
D21V10, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              7               40
  CLUS_2              0               39
  CLUS_3              4               31
  CLUS_4              2               30
  CLUS_5              4               19
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = HLA-A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-A MUTATED        1     11      2      0      1
  HLA-A WILD-TYPE     78    115     25     43     11
D22V1, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              78
  CLUS_2            11             115
  CLUS_3             2              25
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        1      6      3      0
  HLA-A WILD-TYPE     70     70     31     63
D22V2, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              70
  CLUS_2             6              70
  CLUS_3             3              31
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-A MUTATED        0      8      2      0      3
  HLA-A WILD-TYPE     16     54     49     65     52
D22V3, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             0              16
  CLUS_2             8              54
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        1      7      5      0
  HLA-A WILD-TYPE     97     37     45     57
D22V4, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              97
  CLUS_2             7              37
  CLUS_3             5              45
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-A MUTATED        8      1      0      4      2
  HLA-A WILD-TYPE     54     58     40     33     57
D22V5, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             8              54
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             4              33
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        2      0     13
  HLA-A WILD-TYPE    104     54     84
D22V6, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3            13              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED       13      0      2
  HLA-A WILD-TYPE    110     95     69
D22V7, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1            13             110
  CLUS_2             0              95
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED       13      0      2
  HLA-A WILD-TYPE    144     63     67
D22V8, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1            13             144
  CLUS_2             0              63
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HLA-A MUTATED        1      2      3      3      0      0
  HLA-A WILD-TYPE     32     17     56     36     16     45
D22V9, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              17
  CLUS_3             3              56
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HLA-A MUTATED        6      0      1      0      2      0
  HLA-A WILD-TYPE     41     39     34     32     21     35
D22V10, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             6              41
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = FRMD4A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FRMD4A MUTATED        1     12      3      1      0
  FRMD4A WILD-TYPE     78    114     24     42     12
D23V1, multiclass
        clus
vv       FRMD4A MUTATED FRMD4A WILD-TYPE
  CLUS_1              1               78
  CLUS_2             12              114
  CLUS_3              3               24
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRMD4A MUTATED        0     13      2      1
  FRMD4A WILD-TYPE     71     63     32     62
D23V2, multiclass
        clus
vv       FRMD4A MUTATED FRMD4A WILD-TYPE
  CLUS_1              0               71
  CLUS_2             13               63
  CLUS_3              2               32
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FRMD4A MUTATED        2      5      2      1      4
  FRMD4A WILD-TYPE     14     57     49     64     51
D23V3, multiclass
        clus
vv       FRMD4A MUTATED FRMD4A WILD-TYPE
  CLUS_1              2               14
  CLUS_2              5               57
  CLUS_3              2               49
  CLUS_4              1               64
  CLUS_5              4               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRMD4A MUTATED        3      7      3      1
  FRMD4A WILD-TYPE     95     37     47     56
D23V4, multiclass
        clus
vv       FRMD4A MUTATED FRMD4A WILD-TYPE
  CLUS_1              3               95
  CLUS_2              7               37
  CLUS_3              3               47
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FRMD4A MUTATED       10      1      2      3      1
  FRMD4A WILD-TYPE     52     58     38     34     58
D23V5, multiclass
        clus
vv       FRMD4A MUTATED FRMD4A WILD-TYPE
  CLUS_1             10               52
  CLUS_2              1               58
  CLUS_3              2               38
  CLUS_4              3               34
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FRMD4A MUTATED        3      1     13
  FRMD4A WILD-TYPE    103     53     84
D23V6, multiclass
        clus
vv       FRMD4A MUTATED FRMD4A WILD-TYPE
  CLUS_1              3              103
  CLUS_2              1               53
  CLUS_3             13               84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FRMD4A MUTATED       14      3      1
  FRMD4A WILD-TYPE    109     92     70
D23V7, multiclass
        clus
vv       FRMD4A MUTATED FRMD4A WILD-TYPE
  CLUS_1             14              109
  CLUS_2              3               92
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FRMD4A MUTATED       15      2      1
  FRMD4A WILD-TYPE    142     61     68
D23V8, multiclass
        clus
vv       FRMD4A MUTATED FRMD4A WILD-TYPE
  CLUS_1             15              142
  CLUS_2              2               61
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FRMD4A MUTATED        3      2      5      5      0      1
  FRMD4A WILD-TYPE     30     17     54     34     16     44
D23V9, multiclass
        clus
vv       FRMD4A MUTATED FRMD4A WILD-TYPE
  CLUS_1              3               30
  CLUS_2              2               17
  CLUS_3              5               54
  CLUS_4              5               34
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FRMD4A MUTATED        6      1      3      4      1      1
  FRMD4A WILD-TYPE     41     38     32     28     22     34
D23V10, multiclass
        clus
vv       FRMD4A MUTATED FRMD4A WILD-TYPE
  CLUS_1              6               41
  CLUS_2              1               38
  CLUS_3              3               32
  CLUS_4              4               28
  CLUS_5              1               22
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = CTCF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTCF MUTATED        1     17      0      0      0
  CTCF WILD-TYPE     78    109     27     43     12
D24V1, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            1             78
  CLUS_2           17            109
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCF MUTATED        0      8      3      5
  CTCF WILD-TYPE     71     68     31     58
D24V2, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            0             71
  CLUS_2            8             68
  CLUS_3            3             31
  CLUS_4            5             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTCF MUTATED        1      3      2      4      5
  CTCF WILD-TYPE     15     59     49     61     50
D24V3, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            1             15
  CLUS_2            3             59
  CLUS_3            2             49
  CLUS_4            4             61
  CLUS_5            5             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCF MUTATED        3      6      2      4
  CTCF WILD-TYPE     95     38     48     53
D24V4, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            3             95
  CLUS_2            6             38
  CLUS_3            2             48
  CLUS_4            4             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTCF MUTATED        9      2      1      4      0
  CTCF WILD-TYPE     53     57     39     33     59
D24V5, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            9             53
  CLUS_2            2             57
  CLUS_3            1             39
  CLUS_4            4             33
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED        4      2     10
  CTCF WILD-TYPE    102     52     87
D24V6, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            4            102
  CLUS_2            2             52
  CLUS_3           10             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED       14      4      0
  CTCF WILD-TYPE    109     91     71
D24V7, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1           14            109
  CLUS_2            4             91
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED       13      5      0
  CTCF WILD-TYPE    144     58     69
D24V8, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1           13            144
  CLUS_2            5             58
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTCF MUTATED        3      0      4      6      0      1
  CTCF WILD-TYPE     30     19     55     33     16     44
D24V9, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            3             30
  CLUS_2            0             19
  CLUS_3            4             55
  CLUS_4            6             33
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTCF MUTATED        4      1      2      3      4      0
  CTCF WILD-TYPE     43     38     33     29     19     35
D24V10, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            4             43
  CLUS_2            1             38
  CLUS_3            2             33
  CLUS_4            3             29
  CLUS_5            4             19
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = MLL2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL2 MUTATED        5     43      3      4      4
  MLL2 WILD-TYPE     74     83     24     39      8
D25V1, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            5             74
  CLUS_2           43             83
  CLUS_3            3             24
  CLUS_4            4             39
  CLUS_5            4              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED        3     27     10      4
  MLL2 WILD-TYPE     68     49     24     59
D25V2, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            3             68
  CLUS_2           27             49
  CLUS_3           10             24
  CLUS_4            4             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL2 MUTATED        2     20     13      2     15
  MLL2 WILD-TYPE     14     42     38     63     40
D25V3, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            2             14
  CLUS_2           20             42
  CLUS_3           13             38
  CLUS_4            2             63
  CLUS_5           15             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED       13     23     12      4
  MLL2 WILD-TYPE     85     21     38     53
D25V4, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           13             85
  CLUS_2           23             21
  CLUS_3           12             38
  CLUS_4            4             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL2 MUTATED       27      6      6      9      4
  MLL2 WILD-TYPE     35     53     34     28     55
D25V5, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           27             35
  CLUS_2            6             53
  CLUS_3            6             34
  CLUS_4            9             28
  CLUS_5            4             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       16      3     33
  MLL2 WILD-TYPE     90     51     64
D25V6, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           16             90
  CLUS_2            3             51
  CLUS_3           33             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       46      5      8
  MLL2 WILD-TYPE     77     90     63
D25V7, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           46             77
  CLUS_2            5             90
  CLUS_3            8             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       48      5      6
  MLL2 WILD-TYPE    109     58     63
D25V8, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           48            109
  CLUS_2            5             58
  CLUS_3            6             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLL2 MUTATED        4      7     15     10      0      2
  MLL2 WILD-TYPE     29     12     44     29     16     43
D25V9, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            4             29
  CLUS_2            7             12
  CLUS_3           15             44
  CLUS_4           10             29
  CLUS_5            0             16
  CLUS_6            2             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLL2 MUTATED       15      2     11      3      7      0
  MLL2 WILD-TYPE     32     37     24     29     16     35
D25V10, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           15             32
  CLUS_2            2             37
  CLUS_3           11             24
  CLUS_4            3             29
  CLUS_5            7             16
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = MVK MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MVK MUTATED        0      8      1      3      1
  MVK WILD-TYPE     79    118     26     40     11
D26V1, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           0            79
  CLUS_2           8           118
  CLUS_3           1            26
  CLUS_4           3            40
  CLUS_5           1            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MVK MUTATED        0      8      1      0
  MVK WILD-TYPE     71     68     33     63
D26V2, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           0            71
  CLUS_2           8            68
  CLUS_3           1            33
  CLUS_4           0            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MVK MUTATED        0      7      3      0      1
  MVK WILD-TYPE     16     55     48     65     54
D26V3, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           0            16
  CLUS_2           7            55
  CLUS_3           3            48
  CLUS_4           0            65
  CLUS_5           1            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MVK MUTATED        1      8      2      0
  MVK WILD-TYPE     97     36     48     57
D26V4, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           1            97
  CLUS_2           8            36
  CLUS_3           2            48
  CLUS_4           0            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MVK MUTATED        6      1      1      3      0
  MVK WILD-TYPE     56     58     39     34     59
D26V5, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           6            56
  CLUS_2           1            58
  CLUS_3           1            39
  CLUS_4           3            34
  CLUS_5           0            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MVK MUTATED        1      1      9
  MVK WILD-TYPE    105     53     88
D26V6, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           1           105
  CLUS_2           1            53
  CLUS_3           9            88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MVK MUTATED       11      1      1
  MVK WILD-TYPE    112     94     70
D26V7, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1          11           112
  CLUS_2           1            94
  CLUS_3           1            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MVK MUTATED       12      1      0
  MVK WILD-TYPE    145     62     69
D26V8, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1          12           145
  CLUS_2           1            62
  CLUS_3           0            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MVK MUTATED        0      2      1      2      0      1
  MVK WILD-TYPE     33     17     58     37     16     44
D26V9, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           0            33
  CLUS_2           2            17
  CLUS_3           1            58
  CLUS_4           2            37
  CLUS_5           0            16
  CLUS_6           1            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MVK MUTATED        3      1      1      1      0      0
  MVK WILD-TYPE     44     38     34     31     23     35
D26V10, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           3            44
  CLUS_2           1            38
  CLUS_3           1            34
  CLUS_4           1            31
  CLUS_5           0            23
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = MBD6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBD6 MUTATED        1     16      2      1      2
  MBD6 WILD-TYPE     78    110     25     42     10
D27V1, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            1             78
  CLUS_2           16            110
  CLUS_3            2             25
  CLUS_4            1             42
  CLUS_5            2             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBD6 MUTATED        2     12      0      3
  MBD6 WILD-TYPE     69     64     34     60
D27V2, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            2             69
  CLUS_2           12             64
  CLUS_3            0             34
  CLUS_4            3             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBD6 MUTATED        0      9      3      2      6
  MBD6 WILD-TYPE     16     53     48     63     49
D27V3, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            9             53
  CLUS_3            3             48
  CLUS_4            2             63
  CLUS_5            6             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBD6 MUTATED        2      9      6      3
  MBD6 WILD-TYPE     96     35     44     54
D27V4, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            9             35
  CLUS_3            6             44
  CLUS_4            3             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBD6 MUTATED       11      2      1      4      0
  MBD6 WILD-TYPE     51     57     39     33     59
D27V5, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1           11             51
  CLUS_2            2             57
  CLUS_3            1             39
  CLUS_4            4             33
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD6 MUTATED        2      3     13
  MBD6 WILD-TYPE    104     51     84
D27V6, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            3             51
  CLUS_3           13             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD6 MUTATED       16      3      4
  MBD6 WILD-TYPE    107     92     67
D27V7, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1           16            107
  CLUS_2            3             92
  CLUS_3            4             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD6 MUTATED       17      4      2
  MBD6 WILD-TYPE    140     59     67
D27V8, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1           17            140
  CLUS_2            4             59
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MBD6 MUTATED        2      2      6      3      0      0
  MBD6 WILD-TYPE     31     17     53     36     16     45
D27V9, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            2             17
  CLUS_3            6             53
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MBD6 MUTATED        7      0      4      1      1      0
  MBD6 WILD-TYPE     40     39     31     31     22     35
D27V10, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            7             40
  CLUS_2            0             39
  CLUS_3            4             31
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = APC MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APC MUTATED       12     22      5      2      1
  APC WILD-TYPE     67    104     22     41     11
D28V1, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          12            67
  CLUS_2          22           104
  CLUS_3           5            22
  CLUS_4           2            41
  CLUS_5           1            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APC MUTATED       10     14      3      4
  APC WILD-TYPE     61     62     31     59
D28V2, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          10            61
  CLUS_2          14            62
  CLUS_3           3            31
  CLUS_4           4            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APC MUTATED        5     11      7      3      9
  APC WILD-TYPE     11     51     44     62     46
D28V3, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           5            11
  CLUS_2          11            51
  CLUS_3           7            44
  CLUS_4           3            62
  CLUS_5           9            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APC MUTATED        8     15      8      4
  APC WILD-TYPE     90     29     42     53
D28V4, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           8            90
  CLUS_2          15            29
  CLUS_3           8            42
  CLUS_4           4            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APC MUTATED       14      2      6      9      7
  APC WILD-TYPE     48     57     34     28     52
D28V5, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          14            48
  CLUS_2           2            57
  CLUS_3           6            34
  CLUS_4           9            28
  CLUS_5           7            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED        9      3     26
  APC WILD-TYPE     97     51     71
D28V6, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           9            97
  CLUS_2           3            51
  CLUS_3          26            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED       29      4      9
  APC WILD-TYPE     94     91     62
D28V7, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          29            94
  CLUS_2           4            91
  CLUS_3           9            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED       28      3     11
  APC WILD-TYPE    129     60     58
D28V8, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          28           129
  CLUS_2           3            60
  CLUS_3          11            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  APC MUTATED        4      5     10      5      1      1
  APC WILD-TYPE     29     14     49     34     15     44
D28V9, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           4            29
  CLUS_2           5            14
  CLUS_3          10            49
  CLUS_4           5            34
  CLUS_5           1            15
  CLUS_6           1            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  APC MUTATED        8      1      7      6      1      3
  APC WILD-TYPE     39     38     28     26     22     32
D28V10, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           8            39
  CLUS_2           1            38
  CLUS_3           7            28
  CLUS_4           6            26
  CLUS_5           1            22
  CLUS_6           3            32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = CD4 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD4 MUTATED        1     13      0      0      1
  CD4 WILD-TYPE     78    113     27     43     11
D29V1, multiclass
        clus
vv       CD4 MUTATED CD4 WILD-TYPE
  CLUS_1           1            78
  CLUS_2          13           113
  CLUS_3           0            27
  CLUS_4           0            43
  CLUS_5           1            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD4 MUTATED        1     11      0      2
  CD4 WILD-TYPE     70     65     34     61
D29V2, multiclass
        clus
vv       CD4 MUTATED CD4 WILD-TYPE
  CLUS_1           1            70
  CLUS_2          11            65
  CLUS_3           0            34
  CLUS_4           2            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD4 MUTATED        0      4      7      0      2
  CD4 WILD-TYPE     16     58     44     65     53
D29V3, multiclass
        clus
vv       CD4 MUTATED CD4 WILD-TYPE
  CLUS_1           0            16
  CLUS_2           4            58
  CLUS_3           7            44
  CLUS_4           0            65
  CLUS_5           2            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD4 MUTATED        4      5      3      1
  CD4 WILD-TYPE     94     39     47     56
D29V4, multiclass
        clus
vv       CD4 MUTATED CD4 WILD-TYPE
  CLUS_1           4            94
  CLUS_2           5            39
  CLUS_3           3            47
  CLUS_4           1            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD4 MUTATED        7      2      1      3      1
  CD4 WILD-TYPE     55     57     39     34     58
D29V5, multiclass
        clus
vv       CD4 MUTATED CD4 WILD-TYPE
  CLUS_1           7            55
  CLUS_2           2            57
  CLUS_3           1            39
  CLUS_4           3            34
  CLUS_5           1            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CD4 MUTATED        1      2     11
  CD4 WILD-TYPE    105     52     86
D29V6, multiclass
        clus
vv       CD4 MUTATED CD4 WILD-TYPE
  CLUS_1           1           105
  CLUS_2           2            52
  CLUS_3          11            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CD4 MUTATED       11      1      3
  CD4 WILD-TYPE    112     94     68
D29V7, multiclass
        clus
vv       CD4 MUTATED CD4 WILD-TYPE
  CLUS_1          11           112
  CLUS_2           1            94
  CLUS_3           3            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CD4 MUTATED       12      1      2
  CD4 WILD-TYPE    145     62     67
D29V8, multiclass
        clus
vv       CD4 MUTATED CD4 WILD-TYPE
  CLUS_1          12           145
  CLUS_2           1            62
  CLUS_3           2            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CD4 MUTATED        3      5      3      1      0      1
  CD4 WILD-TYPE     30     14     56     38     16     44
D29V9, multiclass
        clus
vv       CD4 MUTATED CD4 WILD-TYPE
  CLUS_1           3            30
  CLUS_2           5            14
  CLUS_3           3            56
  CLUS_4           1            38
  CLUS_5           0            16
  CLUS_6           1            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CD4 MUTATED        6      1      2      2      1      1
  CD4 WILD-TYPE     41     38     33     30     22     34
D29V10, multiclass
        clus
vv       CD4 MUTATED CD4 WILD-TYPE
  CLUS_1           6            41
  CLUS_2           1            38
  CLUS_3           2            33
  CLUS_4           2            30
  CLUS_5           1            22
  CLUS_6           1            34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = PIK3CA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED        3     40      5      6      3
  PIK3CA WILD-TYPE     76     86     22     37      9
D30V1, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              3               76
  CLUS_2             40               86
  CLUS_3              5               22
  CLUS_4              6               37
  CLUS_5              3                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        4     19     23      5
  PIK3CA WILD-TYPE     67     57     11     58
D30V2, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              4               67
  CLUS_2             19               57
  CLUS_3             23               11
  CLUS_4              5               58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED        1     18     16      3     14
  PIK3CA WILD-TYPE     15     44     35     62     41
D30V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              1               15
  CLUS_2             18               44
  CLUS_3             16               35
  CLUS_4              3               62
  CLUS_5             14               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       19     16     14      3
  PIK3CA WILD-TYPE     79     28     36     54
D30V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             19               79
  CLUS_2             16               28
  CLUS_3             14               36
  CLUS_4              3               54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED       25     10      5     10      2
  PIK3CA WILD-TYPE     37     49     35     27     57
D30V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             25               37
  CLUS_2             10               49
  CLUS_3              5               35
  CLUS_4             10               27
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       22      6     24
  PIK3CA WILD-TYPE     84     48     73
D30V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             22               84
  CLUS_2              6               48
  CLUS_3             24               73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       33     16      8
  PIK3CA WILD-TYPE     90     79     63
D30V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             33               90
  CLUS_2             16               79
  CLUS_3              8               63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       43     11      3
  PIK3CA WILD-TYPE    114     52     66
D30V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             43              114
  CLUS_2             11               52
  CLUS_3              3               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIK3CA MUTATED        2      3     21     11      0      4
  PIK3CA WILD-TYPE     31     16     38     28     16     41
D30V9, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              2               31
  CLUS_2              3               16
  CLUS_3             21               38
  CLUS_4             11               28
  CLUS_5              0               16
  CLUS_6              4               41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIK3CA MUTATED       12      4     15      4      6      0
  PIK3CA WILD-TYPE     35     35     20     28     17     35
D30V10, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             12               35
  CLUS_2              4               35
  CLUS_3             15               20
  CLUS_4              4               28
  CLUS_5              6               17
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = JARID2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JARID2 MUTATED        0     22      3      0      3
  JARID2 WILD-TYPE     79    104     24     43      9
D31V1, multiclass
        clus
vv       JARID2 MUTATED JARID2 WILD-TYPE
  CLUS_1              0               79
  CLUS_2             22              104
  CLUS_3              3               24
  CLUS_4              0               43
  CLUS_5              3                9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JARID2 MUTATED        1     15      3      2
  JARID2 WILD-TYPE     70     61     31     61
D31V2, multiclass
        clus
vv       JARID2 MUTATED JARID2 WILD-TYPE
  CLUS_1              1               70
  CLUS_2             15               61
  CLUS_3              3               31
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JARID2 MUTATED        0     10      6      1      6
  JARID2 WILD-TYPE     16     52     45     64     49
D31V3, multiclass
        clus
vv       JARID2 MUTATED JARID2 WILD-TYPE
  CLUS_1              0               16
  CLUS_2             10               52
  CLUS_3              6               45
  CLUS_4              1               64
  CLUS_5              6               49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JARID2 MUTATED        4     12      6      1
  JARID2 WILD-TYPE     94     32     44     56
D31V4, multiclass
        clus
vv       JARID2 MUTATED JARID2 WILD-TYPE
  CLUS_1              4               94
  CLUS_2             12               32
  CLUS_3              6               44
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JARID2 MUTATED       16      1      3      6      0
  JARID2 WILD-TYPE     46     58     37     31     59
D31V5, multiclass
        clus
vv       JARID2 MUTATED JARID2 WILD-TYPE
  CLUS_1             16               46
  CLUS_2              1               58
  CLUS_3              3               37
  CLUS_4              6               31
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  JARID2 MUTATED        3      0     23
  JARID2 WILD-TYPE    103     54     74
D31V6, multiclass
        clus
vv       JARID2 MUTATED JARID2 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              0               54
  CLUS_3             23               74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  JARID2 MUTATED       21      4      3
  JARID2 WILD-TYPE    102     91     68
D31V7, multiclass
        clus
vv       JARID2 MUTATED JARID2 WILD-TYPE
  CLUS_1             21              102
  CLUS_2              4               91
  CLUS_3              3               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  JARID2 MUTATED       24      2      2
  JARID2 WILD-TYPE    133     61     67
D31V8, multiclass
        clus
vv       JARID2 MUTATED JARID2 WILD-TYPE
  CLUS_1             24              133
  CLUS_2              2               61
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  JARID2 MUTATED        3      4      5      5      1      1
  JARID2 WILD-TYPE     30     15     54     34     15     44
D31V9, multiclass
        clus
vv       JARID2 MUTATED JARID2 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              4               15
  CLUS_3              5               54
  CLUS_4              5               34
  CLUS_5              1               15
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  JARID2 MUTATED       11      1      3      1      2      1
  JARID2 WILD-TYPE     36     38     32     31     21     34
D31V10, multiclass
        clus
vv       JARID2 MUTATED JARID2 WILD-TYPE
  CLUS_1             11               36
  CLUS_2              1               38
  CLUS_3              3               32
  CLUS_4              1               31
  CLUS_5              2               21
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = PAX6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAX6 MUTATED        1     14      0      3      1
  PAX6 WILD-TYPE     78    112     27     40     11
D32V1, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            1             78
  CLUS_2           14            112
  CLUS_3            0             27
  CLUS_4            3             40
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAX6 MUTATED        0     11      3      2
  PAX6 WILD-TYPE     71     65     31     61
D32V2, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            0             71
  CLUS_2           11             65
  CLUS_3            3             31
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAX6 MUTATED        1      9      3      1      2
  PAX6 WILD-TYPE     15     53     48     64     53
D32V3, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            9             53
  CLUS_3            3             48
  CLUS_4            1             64
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAX6 MUTATED        5      7      4      0
  PAX6 WILD-TYPE     93     37     46     57
D32V4, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            5             93
  CLUS_2            7             37
  CLUS_3            4             46
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAX6 MUTATED        9      1      2      5      0
  PAX6 WILD-TYPE     53     58     38     32     59
D32V5, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            9             53
  CLUS_2            1             58
  CLUS_3            2             38
  CLUS_4            5             32
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAX6 MUTATED        3      1     13
  PAX6 WILD-TYPE    103     53     84
D32V6, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            3            103
  CLUS_2            1             53
  CLUS_3           13             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAX6 MUTATED       17      2      0
  PAX6 WILD-TYPE    106     93     71
D32V7, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1           17            106
  CLUS_2            2             93
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAX6 MUTATED       17      1      1
  PAX6 WILD-TYPE    140     62     68
D32V8, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1           17            140
  CLUS_2            1             62
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PAX6 MUTATED        1      3      3      7      0      0
  PAX6 WILD-TYPE     32     16     56     32     16     45
D32V9, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            3             16
  CLUS_3            3             56
  CLUS_4            7             32
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PAX6 MUTATED        5      0      2      3      3      1
  PAX6 WILD-TYPE     42     39     33     29     20     34
D32V10, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            5             42
  CLUS_2            0             39
  CLUS_3            2             33
  CLUS_4            3             29
  CLUS_5            3             20
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = SNAPC2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNAPC2 MUTATED        0      8      1      2      0
  SNAPC2 WILD-TYPE     79    118     26     41     12
D33V1, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              8              118
  CLUS_3              1               26
  CLUS_4              2               41
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAPC2 MUTATED        0      7      2      1
  SNAPC2 WILD-TYPE     71     69     32     62
D33V2, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              7               69
  CLUS_3              2               32
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNAPC2 MUTATED        1      2      5      0      0
  SNAPC2 WILD-TYPE     15     60     46     65     55
D33V3, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              2               60
  CLUS_3              5               46
  CLUS_4              0               65
  CLUS_5              0               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAPC2 MUTATED        1      7      0      0
  SNAPC2 WILD-TYPE     97     37     50     57
D33V4, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              7               37
  CLUS_3              0               50
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNAPC2 MUTATED        6      0      0      4      0
  SNAPC2 WILD-TYPE     56     59     40     33     59
D33V5, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              6               56
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              4               33
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SNAPC2 MUTATED        1      0      9
  SNAPC2 WILD-TYPE    105     54     88
D33V6, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               54
  CLUS_3              9               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SNAPC2 MUTATED       10      1      0
  SNAPC2 WILD-TYPE    113     94     71
D33V7, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1             10              113
  CLUS_2              1               94
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SNAPC2 MUTATED       10      1      0
  SNAPC2 WILD-TYPE    147     62     69
D33V8, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1             10              147
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SNAPC2 MUTATED        0      3      3      2      0      1
  SNAPC2 WILD-TYPE     33     16     56     37     16     44
D33V9, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              3               16
  CLUS_3              3               56
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SNAPC2 MUTATED        3      1      2      2      1      0
  SNAPC2 WILD-TYPE     44     38     33     30     22     35
D33V10, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              1               38
  CLUS_3              2               33
  CLUS_4              2               30
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = KIAA0182 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0182 MUTATED        1     16      0      2      1
  KIAA0182 WILD-TYPE     78    110     27     41     11
D34V1, multiclass
        clus
vv       KIAA0182 MUTATED KIAA0182 WILD-TYPE
  CLUS_1                1                 78
  CLUS_2               16                110
  CLUS_3                0                 27
  CLUS_4                2                 41
  CLUS_5                1                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0182 MUTATED        3      9      1      1
  KIAA0182 WILD-TYPE     68     67     33     62
D34V2, multiclass
        clus
vv       KIAA0182 MUTATED KIAA0182 WILD-TYPE
  CLUS_1                3                 68
  CLUS_2                9                 67
  CLUS_3                1                 33
  CLUS_4                1                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0182 MUTATED        0      7      5      0      5
  KIAA0182 WILD-TYPE     16     55     46     65     50
D34V3, multiclass
        clus
vv       KIAA0182 MUTATED KIAA0182 WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                7                 55
  CLUS_3                5                 46
  CLUS_4                0                 65
  CLUS_5                5                 50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0182 MUTATED        2     12      3      0
  KIAA0182 WILD-TYPE     96     32     47     57
D34V4, multiclass
        clus
vv       KIAA0182 MUTATED KIAA0182 WILD-TYPE
  CLUS_1                2                 96
  CLUS_2               12                 32
  CLUS_3                3                 47
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0182 MUTATED        8      1      3      3      1
  KIAA0182 WILD-TYPE     54     58     37     34     58
D34V5, multiclass
        clus
vv       KIAA0182 MUTATED KIAA0182 WILD-TYPE
  CLUS_1                8                 54
  CLUS_2                1                 58
  CLUS_3                3                 37
  CLUS_4                3                 34
  CLUS_5                1                 58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0182 MUTATED        3      0     13
  KIAA0182 WILD-TYPE    103     54     84
D34V6, multiclass
        clus
vv       KIAA0182 MUTATED KIAA0182 WILD-TYPE
  CLUS_1                3                103
  CLUS_2                0                 54
  CLUS_3               13                 84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0182 MUTATED       15      0      5
  KIAA0182 WILD-TYPE    108     95     66
D34V7, multiclass
        clus
vv       KIAA0182 MUTATED KIAA0182 WILD-TYPE
  CLUS_1               15                108
  CLUS_2                0                 95
  CLUS_3                5                 66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0182 MUTATED       18      0      2
  KIAA0182 WILD-TYPE    139     63     67
D34V8, multiclass
        clus
vv       KIAA0182 MUTATED KIAA0182 WILD-TYPE
  CLUS_1               18                139
  CLUS_2                0                 63
  CLUS_3                2                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0182 MUTATED        1      2      1      6      1      0
  KIAA0182 WILD-TYPE     32     17     58     33     15     45
D34V9, multiclass
        clus
vv       KIAA0182 MUTATED KIAA0182 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                2                 17
  CLUS_3                1                 58
  CLUS_4                6                 33
  CLUS_5                1                 15
  CLUS_6                0                 45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0182 MUTATED        7      0      0      1      1      2
  KIAA0182 WILD-TYPE     40     39     35     31     22     33
D34V10, multiclass
        clus
vv       KIAA0182 MUTATED KIAA0182 WILD-TYPE
  CLUS_1                7                 40
  CLUS_2                0                 39
  CLUS_3                0                 35
  CLUS_4                1                 31
  CLUS_5                1                 22
  CLUS_6                2                 33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = AOC3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AOC3 MUTATED        3      8      1      1      0
  AOC3 WILD-TYPE     76    118     26     42     12
D35V1, multiclass
        clus
vv       AOC3 MUTATED AOC3 WILD-TYPE
  CLUS_1            3             76
  CLUS_2            8            118
  CLUS_3            1             26
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AOC3 MUTATED        3      6      2      0
  AOC3 WILD-TYPE     68     70     32     63
D35V2, multiclass
        clus
vv       AOC3 MUTATED AOC3 WILD-TYPE
  CLUS_1            3             68
  CLUS_2            6             70
  CLUS_3            2             32
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AOC3 MUTATED        0      0      4      1      4
  AOC3 WILD-TYPE     16     62     47     64     51
D35V3, multiclass
        clus
vv       AOC3 MUTATED AOC3 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            0             62
  CLUS_3            4             47
  CLUS_4            1             64
  CLUS_5            4             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AOC3 MUTATED        2      5      1      1
  AOC3 WILD-TYPE     96     39     49     56
D35V4, multiclass
        clus
vv       AOC3 MUTATED AOC3 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            5             39
  CLUS_3            1             49
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AOC3 MUTATED        6      1      2      0      3
  AOC3 WILD-TYPE     56     58     38     37     56
D35V5, multiclass
        clus
vv       AOC3 MUTATED AOC3 WILD-TYPE
  CLUS_1            6             56
  CLUS_2            1             58
  CLUS_3            2             38
  CLUS_4            0             37
  CLUS_5            3             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AOC3 MUTATED        4      1      7
  AOC3 WILD-TYPE    102     53     90
D35V6, multiclass
        clus
vv       AOC3 MUTATED AOC3 WILD-TYPE
  CLUS_1            4            102
  CLUS_2            1             53
  CLUS_3            7             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AOC3 MUTATED        8      2      3
  AOC3 WILD-TYPE    115     93     68
D35V7, multiclass
        clus
vv       AOC3 MUTATED AOC3 WILD-TYPE
  CLUS_1            8            115
  CLUS_2            2             93
  CLUS_3            3             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AOC3 MUTATED        9      0      4
  AOC3 WILD-TYPE    148     63     65
D35V8, multiclass
        clus
vv       AOC3 MUTATED AOC3 WILD-TYPE
  CLUS_1            9            148
  CLUS_2            0             63
  CLUS_3            4             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AOC3 MUTATED        3      0      2      1      2      1
  AOC3 WILD-TYPE     30     19     57     38     14     44
D35V9, multiclass
        clus
vv       AOC3 MUTATED AOC3 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            0             19
  CLUS_3            2             57
  CLUS_4            1             38
  CLUS_5            2             14
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AOC3 MUTATED        4      0      1      2      0      2
  AOC3 WILD-TYPE     43     39     34     30     23     33
D35V10, multiclass
        clus
vv       AOC3 MUTATED AOC3 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            2             30
  CLUS_5            0             23
  CLUS_6            2             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = ZBTB7C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB7C MUTATED        1     12      2      0      0
  ZBTB7C WILD-TYPE     78    114     25     43     12
D36V1, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              1               78
  CLUS_2             12              114
  CLUS_3              2               25
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB7C MUTATED        0     12      1      0
  ZBTB7C WILD-TYPE     71     64     33     63
D36V2, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              0               71
  CLUS_2             12               64
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB7C MUTATED        1      3      6      0      2
  ZBTB7C WILD-TYPE     15     59     45     65     53
D36V3, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              1               15
  CLUS_2              3               59
  CLUS_3              6               45
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB7C MUTATED        3      6      2      1
  ZBTB7C WILD-TYPE     95     38     48     56
D36V4, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              3               95
  CLUS_2              6               38
  CLUS_3              2               48
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB7C MUTATED        5      1      2      3      1
  ZBTB7C WILD-TYPE     57     58     38     34     58
D36V5, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              5               57
  CLUS_2              1               58
  CLUS_3              2               38
  CLUS_4              3               34
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB7C MUTATED        1      2      9
  ZBTB7C WILD-TYPE    105     52     88
D36V6, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              1              105
  CLUS_2              2               52
  CLUS_3              9               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB7C MUTATED       11      2      2
  ZBTB7C WILD-TYPE    112     93     69
D36V7, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1             11              112
  CLUS_2              2               93
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB7C MUTATED       12      1      2
  ZBTB7C WILD-TYPE    145     62     67
D36V8, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1             12              145
  CLUS_2              1               62
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZBTB7C MUTATED        2      3      6      3      0      0
  ZBTB7C WILD-TYPE     31     16     53     36     16     45
D36V9, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              2               31
  CLUS_2              3               16
  CLUS_3              6               53
  CLUS_4              3               36
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZBTB7C MUTATED        7      0      3      1      2      1
  ZBTB7C WILD-TYPE     40     39     32     31     21     34
D36V10, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              7               40
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              1               31
  CLUS_5              2               21
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = NLK MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NLK MUTATED        1     10      1      0      0
  NLK WILD-TYPE     78    116     26     43     12
D37V1, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           1            78
  CLUS_2          10           116
  CLUS_3           1            26
  CLUS_4           0            43
  CLUS_5           0            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLK MUTATED        1      7      1      0
  NLK WILD-TYPE     70     69     33     63
D37V2, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           1            70
  CLUS_2           7            69
  CLUS_3           1            33
  CLUS_4           0            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NLK MUTATED        0      2      3      1      4
  NLK WILD-TYPE     16     60     48     64     51
D37V3, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           0            16
  CLUS_2           2            60
  CLUS_3           3            48
  CLUS_4           1            64
  CLUS_5           4            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLK MUTATED        2      7      0      1
  NLK WILD-TYPE     96     37     50     56
D37V4, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           2            96
  CLUS_2           7            37
  CLUS_3           0            50
  CLUS_4           1            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NLK MUTATED        6      0      1      2      1
  NLK WILD-TYPE     56     59     39     35     58
D37V5, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           6            56
  CLUS_2           0            59
  CLUS_3           1            39
  CLUS_4           2            35
  CLUS_5           1            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NLK MUTATED        3      0      7
  NLK WILD-TYPE    103     54     90
D37V6, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           3           103
  CLUS_2           0            54
  CLUS_3           7            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NLK MUTATED       11      0      1
  NLK WILD-TYPE    112     95     70
D37V7, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1          11           112
  CLUS_2           0            95
  CLUS_3           1            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NLK MUTATED       12      0      0
  NLK WILD-TYPE    145     63     69
D37V8, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1          12           145
  CLUS_2           0            63
  CLUS_3           0            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NLK MUTATED        1      3      3      1      1      0
  NLK WILD-TYPE     32     16     56     38     15     45
D37V9, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           1            32
  CLUS_2           3            16
  CLUS_3           3            56
  CLUS_4           1            38
  CLUS_5           1            15
  CLUS_6           0            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NLK MUTATED        5      0      1      1      2      0
  NLK WILD-TYPE     42     39     34     31     21     35
D37V10, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           5            42
  CLUS_2           0            39
  CLUS_3           1            34
  CLUS_4           1            31
  CLUS_5           2            21
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = WBP1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WBP1 MUTATED        1      6      1      0      0
  WBP1 WILD-TYPE     78    120     26     43     12
D38V1, multiclass
        clus
vv       WBP1 MUTATED WBP1 WILD-TYPE
  CLUS_1            1             78
  CLUS_2            6            120
  CLUS_3            1             26
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WBP1 MUTATED        0      5      1      2
  WBP1 WILD-TYPE     71     71     33     61
D38V2, multiclass
        clus
vv       WBP1 MUTATED WBP1 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            5             71
  CLUS_3            1             33
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WBP1 MUTATED        1      3      2      0      2
  WBP1 WILD-TYPE     15     59     49     65     53
D38V3, multiclass
        clus
vv       WBP1 MUTATED WBP1 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            3             59
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WBP1 MUTATED        2      6      0      0
  WBP1 WILD-TYPE     96     38     50     57
D38V4, multiclass
        clus
vv       WBP1 MUTATED WBP1 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            6             38
  CLUS_3            0             50
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WBP1 MUTATED        4      0      0      3      0
  WBP1 WILD-TYPE     58     59     40     34     59
D38V5, multiclass
        clus
vv       WBP1 MUTATED WBP1 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            3             34
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WBP1 MUTATED        2      0      5
  WBP1 WILD-TYPE    104     54     92
D38V6, multiclass
        clus
vv       WBP1 MUTATED WBP1 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            0             54
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WBP1 MUTATED        8      0      0
  WBP1 WILD-TYPE    115     95     71
D38V7, multiclass
        clus
vv       WBP1 MUTATED WBP1 WILD-TYPE
  CLUS_1            8            115
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WBP1 MUTATED        8      0      0
  WBP1 WILD-TYPE    149     63     69
D38V8, multiclass
        clus
vv       WBP1 MUTATED WBP1 WILD-TYPE
  CLUS_1            8            149
  CLUS_2            0             63
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WBP1 MUTATED        1      1      4      1      0      0
  WBP1 WILD-TYPE     32     18     55     38     16     45
D38V9, multiclass
        clus
vv       WBP1 MUTATED WBP1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            4             55
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WBP1 MUTATED        3      0      3      1      0      0
  WBP1 WILD-TYPE     44     39     32     31     23     35
D38V10, multiclass
        clus
vv       WBP1 MUTATED WBP1 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            0             39
  CLUS_3            3             32
  CLUS_4            1             31
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = TMEM41A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM41A MUTATED        0      4      2      0      0
  TMEM41A WILD-TYPE     79    122     25     43     12
D39V1, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               0                79
  CLUS_2               4               122
  CLUS_3               2                25
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM41A MUTATED        0      4      1      0
  TMEM41A WILD-TYPE     71     72     33     63
D39V2, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               0                71
  CLUS_2               4                72
  CLUS_3               1                33
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM41A MUTATED        1      0      1      0      2
  TMEM41A WILD-TYPE     15     62     50     65     53
D39V3, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               1                15
  CLUS_2               0                62
  CLUS_3               1                50
  CLUS_4               0                65
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM41A MUTATED        2      2      0      0
  TMEM41A WILD-TYPE     96     42     50     57
D39V4, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               2                96
  CLUS_2               2                42
  CLUS_3               0                50
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM41A MUTATED        2      1      1      2      0
  TMEM41A WILD-TYPE     60     58     39     35     59
D39V5, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               2                60
  CLUS_2               1                58
  CLUS_3               1                39
  CLUS_4               2                35
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM41A MUTATED        0      1      5
  TMEM41A WILD-TYPE    106     53     92
D39V6, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               0               106
  CLUS_2               1                53
  CLUS_3               5                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM41A MUTATED        5      1      0
  TMEM41A WILD-TYPE    118     94     71
D39V7, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               5               118
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM41A MUTATED        5      1      0
  TMEM41A WILD-TYPE    152     62     69
D39V8, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               5               152
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM41A MUTATED        0      1      1      2      0      1
  TMEM41A WILD-TYPE     33     18     58     37     16     44
D39V9, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                18
  CLUS_3               1                58
  CLUS_4               2                37
  CLUS_5               0                16
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM41A MUTATED        2      1      1      0      1      0
  TMEM41A WILD-TYPE     45     38     34     32     22     35
D39V10, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               2                45
  CLUS_2               1                38
  CLUS_3               1                34
  CLUS_4               0                32
  CLUS_5               1                22
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = POLM MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POLM MUTATED        1      8      0      0      1
  POLM WILD-TYPE     78    118     27     43     11
D40V1, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            1             78
  CLUS_2            8            118
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLM MUTATED        1      6      0      1
  POLM WILD-TYPE     70     70     34     62
D40V2, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            1             70
  CLUS_2            6             70
  CLUS_3            0             34
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POLM MUTATED        0      4      4      0      0
  POLM WILD-TYPE     16     58     47     65     55
D40V3, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            0             16
  CLUS_2            4             58
  CLUS_3            4             47
  CLUS_4            0             65
  CLUS_5            0             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLM MUTATED        1      4      3      0
  POLM WILD-TYPE     97     40     47     57
D40V4, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            1             97
  CLUS_2            4             40
  CLUS_3            3             47
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POLM MUTATED        5      1      1      2      1
  POLM WILD-TYPE     57     58     39     35     58
D40V5, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            5             57
  CLUS_2            1             58
  CLUS_3            1             39
  CLUS_4            2             35
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POLM MUTATED        3      1      6
  POLM WILD-TYPE    103     53     91
D40V6, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            3            103
  CLUS_2            1             53
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POLM MUTATED        8      1      1
  POLM WILD-TYPE    115     94     70
D40V7, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            8            115
  CLUS_2            1             94
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POLM MUTATED        9      1      0
  POLM WILD-TYPE    148     62     69
D40V8, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            9            148
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  POLM MUTATED        0      0      3      3      0      0
  POLM WILD-TYPE     33     19     56     36     16     45
D40V9, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             19
  CLUS_3            3             56
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  POLM MUTATED        2      0      2      1      1      0
  POLM WILD-TYPE     45     39     33     31     22     35
D40V10, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            2             33
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = ATP6V1B1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V1B1 MUTATED        0     16      2      2      0
  ATP6V1B1 WILD-TYPE     79    110     25     41     12
D41V1, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                0                 79
  CLUS_2               16                110
  CLUS_3                2                 25
  CLUS_4                2                 41
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1B1 MUTATED        0     11      3      1
  ATP6V1B1 WILD-TYPE     71     65     31     62
D41V2, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                0                 71
  CLUS_2               11                 65
  CLUS_3                3                 31
  CLUS_4                1                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V1B1 MUTATED        3      6      1      0      5
  ATP6V1B1 WILD-TYPE     13     56     50     65     50
D41V3, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                3                 13
  CLUS_2                6                 56
  CLUS_3                1                 50
  CLUS_4                0                 65
  CLUS_5                5                 50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1B1 MUTATED        4      6      4      1
  ATP6V1B1 WILD-TYPE     94     38     46     56
D41V4, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                4                 94
  CLUS_2                6                 38
  CLUS_3                4                 46
  CLUS_4                1                 56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V1B1 MUTATED       10      2      3      2      0
  ATP6V1B1 WILD-TYPE     52     57     37     35     59
D41V5, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1               10                 52
  CLUS_2                2                 57
  CLUS_3                3                 37
  CLUS_4                2                 35
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ATP6V1B1 MUTATED        3      1     13
  ATP6V1B1 WILD-TYPE    103     53     84
D41V6, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                3                103
  CLUS_2                1                 53
  CLUS_3               13                 84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ATP6V1B1 MUTATED       19      0      1
  ATP6V1B1 WILD-TYPE    104     95     70
D41V7, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1               19                104
  CLUS_2                0                 95
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ATP6V1B1 MUTATED       18      0      2
  ATP6V1B1 WILD-TYPE    139     63     67
D41V8, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1               18                139
  CLUS_2                0                 63
  CLUS_3                2                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATP6V1B1 MUTATED        2      6      4      2      0      0
  ATP6V1B1 WILD-TYPE     31     13     55     37     16     45
D41V9, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                6                 13
  CLUS_3                4                 55
  CLUS_4                2                 37
  CLUS_5                0                 16
  CLUS_6                0                 45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATP6V1B1 MUTATED        6      0      4      3      1      0
  ATP6V1B1 WILD-TYPE     41     39     31     29     22     35
D41V10, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                6                 41
  CLUS_2                0                 39
  CLUS_3                4                 31
  CLUS_4                3                 29
  CLUS_5                1                 22
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = MUC6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MUC6 MUTATED        8     18      3      4      1
  MUC6 WILD-TYPE     71    108     24     39     11
D42V1, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            8             71
  CLUS_2           18            108
  CLUS_3            3             24
  CLUS_4            4             39
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC6 MUTATED        7     13      5      3
  MUC6 WILD-TYPE     64     63     29     60
D42V2, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            7             64
  CLUS_2           13             63
  CLUS_3            5             29
  CLUS_4            3             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MUC6 MUTATED        2     11      6      3      6
  MUC6 WILD-TYPE     14     51     45     62     49
D42V3, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            2             14
  CLUS_2           11             51
  CLUS_3            6             45
  CLUS_4            3             62
  CLUS_5            6             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC6 MUTATED       11     11      5      1
  MUC6 WILD-TYPE     87     33     45     56
D42V4, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1           11             87
  CLUS_2           11             33
  CLUS_3            5             45
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MUC6 MUTATED       16      2      3      3      6
  MUC6 WILD-TYPE     46     57     37     34     53
D42V5, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1           16             46
  CLUS_2            2             57
  CLUS_3            3             37
  CLUS_4            3             34
  CLUS_5            6             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC6 MUTATED       10      2     18
  MUC6 WILD-TYPE     96     52     79
D42V6, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1           10             96
  CLUS_2            2             52
  CLUS_3           18             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC6 MUTATED       22      4      8
  MUC6 WILD-TYPE    101     91     63
D42V7, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1           22            101
  CLUS_2            4             91
  CLUS_3            8             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC6 MUTATED       24      3      7
  MUC6 WILD-TYPE    133     60     62
D42V8, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1           24            133
  CLUS_2            3             60
  CLUS_3            7             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MUC6 MUTATED        5      3      6      8      1      1
  MUC6 WILD-TYPE     28     16     53     31     15     44
D42V9, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            5             28
  CLUS_2            3             16
  CLUS_3            6             53
  CLUS_4            8             31
  CLUS_5            1             15
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MUC6 MUTATED        6      1      5      4      3      5
  MUC6 WILD-TYPE     41     38     30     28     20     30
D42V10, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            6             41
  CLUS_2            1             38
  CLUS_3            5             30
  CLUS_4            4             28
  CLUS_5            3             20
  CLUS_6            5             30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = CIC MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIC MUTATED        1     21      0      3      1
  CIC WILD-TYPE     78    105     27     40     11
D43V1, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           1            78
  CLUS_2          21           105
  CLUS_3           0            27
  CLUS_4           3            40
  CLUS_5           1            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED        1     14      1      3
  CIC WILD-TYPE     70     62     33     60
D43V2, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           1            70
  CLUS_2          14            62
  CLUS_3           1            33
  CLUS_4           3            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIC MUTATED        0     10      7      2      5
  CIC WILD-TYPE     16     52     44     63     50
D43V3, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           0            16
  CLUS_2          10            52
  CLUS_3           7            44
  CLUS_4           2            63
  CLUS_5           5            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED        5     10      7      2
  CIC WILD-TYPE     93     34     43     55
D43V4, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           5            93
  CLUS_2          10            34
  CLUS_3           7            43
  CLUS_4           2            55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIC MUTATED       10      3      2      5      1
  CIC WILD-TYPE     52     56     38     32     58
D43V5, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          10            52
  CLUS_2           3            56
  CLUS_3           2            38
  CLUS_4           5            32
  CLUS_5           1            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED        4      2     15
  CIC WILD-TYPE    102     52     82
D43V6, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           4           102
  CLUS_2           2            52
  CLUS_3          15            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED       19      4      3
  CIC WILD-TYPE    104     91     68
D43V7, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          19           104
  CLUS_2           4            91
  CLUS_3           3            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED       22      4      0
  CIC WILD-TYPE    135     59     69
D43V8, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          22           135
  CLUS_2           4            59
  CLUS_3           0            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CIC MUTATED        2      1      7      4      0      1
  CIC WILD-TYPE     31     18     52     35     16     44
D43V9, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           2            31
  CLUS_2           1            18
  CLUS_3           7            52
  CLUS_4           4            35
  CLUS_5           0            16
  CLUS_6           1            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CIC MUTATED        7      1      5      0      2      0
  CIC WILD-TYPE     40     38     30     32     21     35
D43V10, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           7            40
  CLUS_2           1            38
  CLUS_3           5            30
  CLUS_4           0            32
  CLUS_5           2            21
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = SLC27A3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC27A3 MUTATED        0      8      0      0      0
  SLC27A3 WILD-TYPE     79    118     27     43     12
D44V1, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               8               118
  CLUS_3               0                27
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC27A3 MUTATED        0      4      1      1
  SLC27A3 WILD-TYPE     71     72     33     62
D44V2, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               4                72
  CLUS_3               1                33
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC27A3 MUTATED        0      2      3      1      2
  SLC27A3 WILD-TYPE     16     60     48     64     53
D44V3, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               2                60
  CLUS_3               3                48
  CLUS_4               1                64
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC27A3 MUTATED        2      4      1      1
  SLC27A3 WILD-TYPE     96     40     49     56
D44V4, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               2                96
  CLUS_2               4                40
  CLUS_3               1                49
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC27A3 MUTATED        3      1      2      2      0
  SLC27A3 WILD-TYPE     59     58     38     35     59
D44V5, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               3                59
  CLUS_2               1                58
  CLUS_3               2                38
  CLUS_4               2                35
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC27A3 MUTATED        1      0      7
  SLC27A3 WILD-TYPE    105     54     90
D44V6, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               0                54
  CLUS_3               7                90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC27A3 MUTATED        8      1      0
  SLC27A3 WILD-TYPE    115     94     71
D44V7, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               8               115
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC27A3 MUTATED        8      0      1
  SLC27A3 WILD-TYPE    149     63     68
D44V8, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               8               149
  CLUS_2               0                63
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC27A3 MUTATED        2      0      1      2      1      0
  SLC27A3 WILD-TYPE     31     19     58     37     15     45
D44V9, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                19
  CLUS_3               1                58
  CLUS_4               2                37
  CLUS_5               1                15
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC27A3 MUTATED        3      0      0      1      1      1
  SLC27A3 WILD-TYPE     44     39     35     31     22     34
D44V10, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               3                44
  CLUS_2               0                39
  CLUS_3               0                35
  CLUS_4               1                31
  CLUS_5               1                22
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = ZMYM4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM4 MUTATED        1     10      3      2      1
  ZMYM4 WILD-TYPE     78    116     24     41     11
D45V1, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             1              78
  CLUS_2            10             116
  CLUS_3             3              24
  CLUS_4             2              41
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM4 MUTATED        1      6      4      1
  ZMYM4 WILD-TYPE     70     70     30     62
D45V2, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             6              70
  CLUS_3             4              30
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM4 MUTATED        2      6      3      1      4
  ZMYM4 WILD-TYPE     14     56     48     64     51
D45V3, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             6              56
  CLUS_3             3              48
  CLUS_4             1              64
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM4 MUTATED        4      8      3      1
  ZMYM4 WILD-TYPE     94     36     47     56
D45V4, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             4              94
  CLUS_2             8              36
  CLUS_3             3              47
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM4 MUTATED        8      1      2      3      1
  ZMYM4 WILD-TYPE     54     58     38     34     58
D45V5, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             8              54
  CLUS_2             1              58
  CLUS_3             2              38
  CLUS_4             3              34
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM4 MUTATED        5      1      9
  ZMYM4 WILD-TYPE    101     53     88
D45V6, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             5             101
  CLUS_2             1              53
  CLUS_3             9              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM4 MUTATED       13      3      1
  ZMYM4 WILD-TYPE    110     92     70
D45V7, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1            13             110
  CLUS_2             3              92
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM4 MUTATED       15      1      1
  ZMYM4 WILD-TYPE    142     62     68
D45V8, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1            15             142
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZMYM4 MUTATED        1      2      3      4      0      1
  ZMYM4 WILD-TYPE     32     17     56     35     16     44
D45V9, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              17
  CLUS_3             3              56
  CLUS_4             4              35
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZMYM4 MUTATED        2      1      3      2      3      0
  ZMYM4 WILD-TYPE     45     38     32     30     20     35
D45V10, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             2              30
  CLUS_5             3              20
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = NT5M MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NT5M MUTATED        0      4      0      1      0
  NT5M WILD-TYPE     79    122     27     42     12
D46V1, multiclass
        clus
vv       NT5M MUTATED NT5M WILD-TYPE
  CLUS_1            0             79
  CLUS_2            4            122
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NT5M MUTATED        0      2      1      0
  NT5M WILD-TYPE     71     74     33     63
D46V2, multiclass
        clus
vv       NT5M MUTATED NT5M WILD-TYPE
  CLUS_1            0             71
  CLUS_2            2             74
  CLUS_3            1             33
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NT5M MUTATED        0      0      0      1      2
  NT5M WILD-TYPE     16     62     51     64     53
D46V3, multiclass
        clus
vv       NT5M MUTATED NT5M WILD-TYPE
  CLUS_1            0             16
  CLUS_2            0             62
  CLUS_3            0             51
  CLUS_4            1             64
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NT5M MUTATED        0      2      0      1
  NT5M WILD-TYPE     98     42     50     56
D46V4, multiclass
        clus
vv       NT5M MUTATED NT5M WILD-TYPE
  CLUS_1            0             98
  CLUS_2            2             42
  CLUS_3            0             50
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NT5M MUTATED        2      1      0      1      0
  NT5M WILD-TYPE     60     58     40     36     59
D46V5, multiclass
        clus
vv       NT5M MUTATED NT5M WILD-TYPE
  CLUS_1            2             60
  CLUS_2            1             58
  CLUS_3            0             40
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NT5M MUTATED        1      0      3
  NT5M WILD-TYPE    105     54     94
D46V6, multiclass
        clus
vv       NT5M MUTATED NT5M WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            3             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NT5M MUTATED        5      0      0
  NT5M WILD-TYPE    118     95     71
D46V7, multiclass
        clus
vv       NT5M MUTATED NT5M WILD-TYPE
  CLUS_1            5            118
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NT5M MUTATED        5      0      0
  NT5M WILD-TYPE    152     63     69
D46V8, multiclass
        clus
vv       NT5M MUTATED NT5M WILD-TYPE
  CLUS_1            5            152
  CLUS_2            0             63
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NT5M MUTATED        1      0      0      2      0      0
  NT5M WILD-TYPE     32     19     59     37     16     45
D46V9, multiclass
        clus
vv       NT5M MUTATED NT5M WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             19
  CLUS_3            0             59
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NT5M MUTATED        2      0      0      0      1      0
  NT5M WILD-TYPE     45     39     35     32     22     35
D46V10, multiclass
        clus
vv       NT5M MUTATED NT5M WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            0             35
  CLUS_4            0             32
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = BCL9L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL9L MUTATED        2     16      3      2      0
  BCL9L WILD-TYPE     77    110     24     41     12
D47V1, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             2              77
  CLUS_2            16             110
  CLUS_3             3              24
  CLUS_4             2              41
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL9L MUTATED        2     12      4      2
  BCL9L WILD-TYPE     69     64     30     61
D47V2, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             2              69
  CLUS_2            12              64
  CLUS_3             4              30
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL9L MUTATED        3     10      4      1      4
  BCL9L WILD-TYPE     13     52     47     64     51
D47V3, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             3              13
  CLUS_2            10              52
  CLUS_3             4              47
  CLUS_4             1              64
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL9L MUTATED        5     11      5      1
  BCL9L WILD-TYPE     93     33     45     56
D47V4, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             5              93
  CLUS_2            11              33
  CLUS_3             5              45
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL9L MUTATED       12      2      1      6      1
  BCL9L WILD-TYPE     50     57     39     31     58
D47V5, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1            12              50
  CLUS_2             2              57
  CLUS_3             1              39
  CLUS_4             6              31
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BCL9L MUTATED        4      1     17
  BCL9L WILD-TYPE    102     53     80
D47V6, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             4             102
  CLUS_2             1              53
  CLUS_3            17              80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BCL9L MUTATED       19      4      1
  BCL9L WILD-TYPE    104     91     70
D47V7, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1            19             104
  CLUS_2             4              91
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BCL9L MUTATED       21      2      1
  BCL9L WILD-TYPE    136     61     68
D47V8, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1            21             136
  CLUS_2             2              61
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCL9L MUTATED        4      1      7      5      0      1
  BCL9L WILD-TYPE     29     18     52     34     16     44
D47V9, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             4              29
  CLUS_2             1              18
  CLUS_3             7              52
  CLUS_4             5              34
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCL9L MUTATED        7      1      3      2      4      1
  BCL9L WILD-TYPE     40     38     32     30     19     34
D47V10, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             7              40
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             2              30
  CLUS_5             4              19
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = CCDC153 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC153 MUTATED        0      7      0      1      0
  CCDC153 WILD-TYPE     79    119     27     42     12
D48V1, multiclass
        clus
vv       CCDC153 MUTATED CCDC153 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               7               119
  CLUS_3               0                27
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC153 MUTATED        0      6      0      1
  CCDC153 WILD-TYPE     71     70     34     62
D48V2, multiclass
        clus
vv       CCDC153 MUTATED CCDC153 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               6                70
  CLUS_3               0                34
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC153 MUTATED        1      5      1      0      0
  CCDC153 WILD-TYPE     15     57     50     65     55
D48V3, multiclass
        clus
vv       CCDC153 MUTATED CCDC153 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               5                57
  CLUS_3               1                50
  CLUS_4               0                65
  CLUS_5               0                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC153 MUTATED        2      2      3      0
  CCDC153 WILD-TYPE     96     42     47     57
D48V4, multiclass
        clus
vv       CCDC153 MUTATED CCDC153 WILD-TYPE
  CLUS_1               2                96
  CLUS_2               2                42
  CLUS_3               3                47
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC153 MUTATED        5      1      0      1      0
  CCDC153 WILD-TYPE     57     58     40     36     59
D48V5, multiclass
        clus
vv       CCDC153 MUTATED CCDC153 WILD-TYPE
  CLUS_1               5                57
  CLUS_2               1                58
  CLUS_3               0                40
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC153 MUTATED        1      1      5
  CCDC153 WILD-TYPE    105     53     92
D48V6, multiclass
        clus
vv       CCDC153 MUTATED CCDC153 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               1                53
  CLUS_3               5                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC153 MUTATED        6      2      0
  CCDC153 WILD-TYPE    117     93     71
D48V7, multiclass
        clus
vv       CCDC153 MUTATED CCDC153 WILD-TYPE
  CLUS_1               6               117
  CLUS_2               2                93
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC153 MUTATED        7      1      0
  CCDC153 WILD-TYPE    150     62     69
D48V8, multiclass
        clus
vv       CCDC153 MUTATED CCDC153 WILD-TYPE
  CLUS_1               7               150
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC153 MUTATED        0      2      3      1      0      1
  CCDC153 WILD-TYPE     33     17     56     38     16     44
D48V9, multiclass
        clus
vv       CCDC153 MUTATED CCDC153 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               2                17
  CLUS_3               3                56
  CLUS_4               1                38
  CLUS_5               0                16
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC153 MUTATED        4      1      1      0      1      0
  CCDC153 WILD-TYPE     43     38     34     32     22     35
D48V10, multiclass
        clus
vv       CCDC153 MUTATED CCDC153 WILD-TYPE
  CLUS_1               4                43
  CLUS_2               1                38
  CLUS_3               1                34
  CLUS_4               0                32
  CLUS_5               1                22
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = IRF2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRF2 MUTATED        2     10      1      1      1
  IRF2 WILD-TYPE     77    116     26     42     11
D49V1, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            2             77
  CLUS_2           10            116
  CLUS_3            1             26
  CLUS_4            1             42
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRF2 MUTATED        2      5      1      1
  IRF2 WILD-TYPE     69     71     33     62
D49V2, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            5             71
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRF2 MUTATED        1      6      2      3      2
  IRF2 WILD-TYPE     15     56     49     62     53
D49V3, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            6             56
  CLUS_3            2             49
  CLUS_4            3             62
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRF2 MUTATED        3      7      2      2
  IRF2 WILD-TYPE     95     37     48     55
D49V4, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            3             95
  CLUS_2            7             37
  CLUS_3            2             48
  CLUS_4            2             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRF2 MUTATED        6      2      2      1      1
  IRF2 WILD-TYPE     56     57     38     36     58
D49V5, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            6             56
  CLUS_2            2             57
  CLUS_3            2             38
  CLUS_4            1             36
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF2 MUTATED        4      2      6
  IRF2 WILD-TYPE    102     52     91
D49V6, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            4            102
  CLUS_2            2             52
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF2 MUTATED       12      1      2
  IRF2 WILD-TYPE    111     94     69
D49V7, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1           12            111
  CLUS_2            1             94
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF2 MUTATED       13      1      1
  IRF2 WILD-TYPE    144     62     68
D49V8, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1           13            144
  CLUS_2            1             62
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IRF2 MUTATED        1      0      5      1      1      0
  IRF2 WILD-TYPE     32     19     54     38     15     45
D49V9, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             19
  CLUS_3            5             54
  CLUS_4            1             38
  CLUS_5            1             15
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IRF2 MUTATED        1      0      4      2      1      0
  IRF2 WILD-TYPE     46     39     31     30     22     35
D49V10, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            1             46
  CLUS_2            0             39
  CLUS_3            4             31
  CLUS_4            2             30
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = ADAM28 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAM28 MUTATED        2     10      0      1      1
  ADAM28 WILD-TYPE     77    116     27     42     11
D50V1, multiclass
        clus
vv       ADAM28 MUTATED ADAM28 WILD-TYPE
  CLUS_1              2               77
  CLUS_2             10              116
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM28 MUTATED        2      8      0      0
  ADAM28 WILD-TYPE     69     68     34     63
D50V2, multiclass
        clus
vv       ADAM28 MUTATED ADAM28 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              8               68
  CLUS_3              0               34
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAM28 MUTATED        0      3      4      1      3
  ADAM28 WILD-TYPE     16     59     47     64     52
D50V3, multiclass
        clus
vv       ADAM28 MUTATED ADAM28 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              3               59
  CLUS_3              4               47
  CLUS_4              1               64
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM28 MUTATED        3      5      2      1
  ADAM28 WILD-TYPE     95     39     48     56
D50V4, multiclass
        clus
vv       ADAM28 MUTATED ADAM28 WILD-TYPE
  CLUS_1              3               95
  CLUS_2              5               39
  CLUS_3              2               48
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAM28 MUTATED        4      1      2      3      2
  ADAM28 WILD-TYPE     58     58     38     34     57
D50V5, multiclass
        clus
vv       ADAM28 MUTATED ADAM28 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              1               58
  CLUS_3              2               38
  CLUS_4              3               34
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM28 MUTATED        2      0     10
  ADAM28 WILD-TYPE    104     54     87
D50V6, multiclass
        clus
vv       ADAM28 MUTATED ADAM28 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              0               54
  CLUS_3             10               87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM28 MUTATED       11      1      2
  ADAM28 WILD-TYPE    112     94     69
D50V7, multiclass
        clus
vv       ADAM28 MUTATED ADAM28 WILD-TYPE
  CLUS_1             11              112
  CLUS_2              1               94
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM28 MUTATED       12      1      1
  ADAM28 WILD-TYPE    145     62     68
D50V8, multiclass
        clus
vv       ADAM28 MUTATED ADAM28 WILD-TYPE
  CLUS_1             12              145
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ADAM28 MUTATED        0      2      3      3      0      0
  ADAM28 WILD-TYPE     33     17     56     36     16     45
D50V9, multiclass
        clus
vv       ADAM28 MUTATED ADAM28 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              2               17
  CLUS_3              3               56
  CLUS_4              3               36
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ADAM28 MUTATED        3      0      3      1      1      0
  ADAM28 WILD-TYPE     44     39     32     31     22     35
D50V10, multiclass
        clus
vv       ADAM28 MUTATED ADAM28 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = BCOR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCOR MUTATED        0     18      2      0      1
  BCOR WILD-TYPE     79    108     25     43     11
D51V1, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            0             79
  CLUS_2           18            108
  CLUS_3            2             25
  CLUS_4            0             43
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCOR MUTATED        0      5      8      2
  BCOR WILD-TYPE     71     71     26     61
D51V2, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            0             71
  CLUS_2            5             71
  CLUS_3            8             26
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCOR MUTATED        1      7      1      1      8
  BCOR WILD-TYPE     15     55     50     64     47
D51V3, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            1             15
  CLUS_2            7             55
  CLUS_3            1             50
  CLUS_4            1             64
  CLUS_5            8             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCOR MUTATED        6      9      2      1
  BCOR WILD-TYPE     92     35     48     56
D51V4, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            6             92
  CLUS_2            9             35
  CLUS_3            2             48
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCOR MUTATED        9      2      3      3      0
  BCOR WILD-TYPE     53     57     37     34     59
D51V5, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            9             53
  CLUS_2            2             57
  CLUS_3            3             37
  CLUS_4            3             34
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCOR MUTATED        9      0      8
  BCOR WILD-TYPE     97     54     89
D51V6, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            9             97
  CLUS_2            0             54
  CLUS_3            8             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCOR MUTATED       17      3      1
  BCOR WILD-TYPE    106     92     70
D51V7, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1           17            106
  CLUS_2            3             92
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCOR MUTATED       18      2      1
  BCOR WILD-TYPE    139     61     68
D51V8, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1           18            139
  CLUS_2            2             61
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCOR MUTATED        1      1      5      4      0      2
  BCOR WILD-TYPE     32     18     54     35     16     43
D51V9, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            5             54
  CLUS_4            4             35
  CLUS_5            0             16
  CLUS_6            2             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCOR MUTATED        5      2      4      2      0      0
  BCOR WILD-TYPE     42     37     31     30     23     35
D51V10, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            5             42
  CLUS_2            2             37
  CLUS_3            4             31
  CLUS_4            2             30
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = GLI1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLI1 MUTATED        0     12      2      1      2
  GLI1 WILD-TYPE     79    114     25     42     10
D52V1, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            0             79
  CLUS_2           12            114
  CLUS_3            2             25
  CLUS_4            1             42
  CLUS_5            2             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI1 MUTATED        0      8      2      1
  GLI1 WILD-TYPE     71     68     32     62
D52V2, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            8             68
  CLUS_3            2             32
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLI1 MUTATED        1      7      3      2      2
  GLI1 WILD-TYPE     15     55     48     63     53
D52V3, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            7             55
  CLUS_3            3             48
  CLUS_4            2             63
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI1 MUTATED        3      6      4      2
  GLI1 WILD-TYPE     95     38     46     55
D52V4, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            3             95
  CLUS_2            6             38
  CLUS_3            4             46
  CLUS_4            2             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLI1 MUTATED       10      2      1      2      0
  GLI1 WILD-TYPE     52     57     39     35     59
D52V5, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1           10             52
  CLUS_2            2             57
  CLUS_3            1             39
  CLUS_4            2             35
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLI1 MUTATED        2      2     11
  GLI1 WILD-TYPE    104     52     86
D52V6, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            2             52
  CLUS_3           11             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLI1 MUTATED       11      3      3
  GLI1 WILD-TYPE    112     92     68
D52V7, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1           11            112
  CLUS_2            3             92
  CLUS_3            3             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLI1 MUTATED       14      3      0
  GLI1 WILD-TYPE    143     60     69
D52V8, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1           14            143
  CLUS_2            3             60
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GLI1 MUTATED        0      1      4      4      0      1
  GLI1 WILD-TYPE     33     18     55     35     16     44
D52V9, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             18
  CLUS_3            4             55
  CLUS_4            4             35
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GLI1 MUTATED        3      1      4      0      2      0
  GLI1 WILD-TYPE     44     38     31     32     21     35
D52V10, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            1             38
  CLUS_3            4             31
  CLUS_4            0             32
  CLUS_5            2             21
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DDC MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDC MUTATED        0      7      0      0      2
  DDC WILD-TYPE     79    119     27     43     10
D53V1, multiclass
        clus
vv       DDC MUTATED DDC WILD-TYPE
  CLUS_1           0            79
  CLUS_2           7           119
  CLUS_3           0            27
  CLUS_4           0            43
  CLUS_5           2            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDC MUTATED        1      2      2      1
  DDC WILD-TYPE     70     74     32     62
D53V2, multiclass
        clus
vv       DDC MUTATED DDC WILD-TYPE
  CLUS_1           1            70
  CLUS_2           2            74
  CLUS_3           2            32
  CLUS_4           1            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDC MUTATED        1      2      2      0      3
  DDC WILD-TYPE     15     60     49     65     52
D53V3, multiclass
        clus
vv       DDC MUTATED DDC WILD-TYPE
  CLUS_1           1            15
  CLUS_2           2            60
  CLUS_3           2            49
  CLUS_4           0            65
  CLUS_5           3            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDC MUTATED        3      3      1      1
  DDC WILD-TYPE     95     41     49     56
D53V4, multiclass
        clus
vv       DDC MUTATED DDC WILD-TYPE
  CLUS_1           3            95
  CLUS_2           3            41
  CLUS_3           1            49
  CLUS_4           1            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDC MUTATED        6      0      1      0      0
  DDC WILD-TYPE     56     59     39     37     59
D53V5, multiclass
        clus
vv       DDC MUTATED DDC WILD-TYPE
  CLUS_1           6            56
  CLUS_2           0            59
  CLUS_3           1            39
  CLUS_4           0            37
  CLUS_5           0            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DDC MUTATED        3      0      4
  DDC WILD-TYPE    103     54     93
D53V6, multiclass
        clus
vv       DDC MUTATED DDC WILD-TYPE
  CLUS_1           3           103
  CLUS_2           0            54
  CLUS_3           4            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DDC MUTATED        9      0      0
  DDC WILD-TYPE    114     95     71
D53V7, multiclass
        clus
vv       DDC MUTATED DDC WILD-TYPE
  CLUS_1           9           114
  CLUS_2           0            95
  CLUS_3           0            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DDC MUTATED        9      0      0
  DDC WILD-TYPE    148     63     69
D53V8, multiclass
        clus
vv       DDC MUTATED DDC WILD-TYPE
  CLUS_1           9           148
  CLUS_2           0            63
  CLUS_3           0            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DDC MUTATED        0      1      3      2      0      0
  DDC WILD-TYPE     33     18     56     37     16     45
D53V9, multiclass
        clus
vv       DDC MUTATED DDC WILD-TYPE
  CLUS_1           0            33
  CLUS_2           1            18
  CLUS_3           3            56
  CLUS_4           2            37
  CLUS_5           0            16
  CLUS_6           0            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DDC MUTATED        1      0      2      1      2      0
  DDC WILD-TYPE     46     39     33     31     21     35
D53V10, multiclass
        clus
vv       DDC MUTATED DDC WILD-TYPE
  CLUS_1           1            46
  CLUS_2           0            39
  CLUS_3           2            33
  CLUS_4           1            31
  CLUS_5           2            21
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = TBX4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBX4 MUTATED        0     10      0      1      0
  TBX4 WILD-TYPE     79    116     27     42     12
D54V1, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            0             79
  CLUS_2           10            116
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBX4 MUTATED        0      7      1      1
  TBX4 WILD-TYPE     71     69     33     62
D54V2, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            7             69
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBX4 MUTATED        1      4      3      0      1
  TBX4 WILD-TYPE     15     58     48     65     54
D54V3, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            4             58
  CLUS_3            3             48
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBX4 MUTATED        2      4      3      0
  TBX4 WILD-TYPE     96     40     47     57
D54V4, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            4             40
  CLUS_3            3             47
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBX4 MUTATED        4      0      0      4      0
  TBX4 WILD-TYPE     58     59     40     33     59
D54V5, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            4             33
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TBX4 MUTATED        1      0      7
  TBX4 WILD-TYPE    105     54     90
D54V6, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            7             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TBX4 MUTATED        9      2      0
  TBX4 WILD-TYPE    114     93     71
D54V7, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            9            114
  CLUS_2            2             93
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TBX4 MUTATED       10      1      0
  TBX4 WILD-TYPE    147     62     69
D54V8, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1           10            147
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TBX4 MUTATED        1      1      3      2      0      0
  TBX4 WILD-TYPE     32     18     56     37     16     45
D54V9, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            3             56
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TBX4 MUTATED        3      0      2      0      2      0
  TBX4 WILD-TYPE     44     39     33     32     21     35
D54V10, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            0             39
  CLUS_3            2             33
  CLUS_4            0             32
  CLUS_5            2             21
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = GXYLT1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GXYLT1 MUTATED        0     10      1      1      0
  GXYLT1 WILD-TYPE     79    116     26     42     12
D55V1, multiclass
        clus
vv       GXYLT1 MUTATED GXYLT1 WILD-TYPE
  CLUS_1              0               79
  CLUS_2             10              116
  CLUS_3              1               26
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GXYLT1 MUTATED        0      7      3      2
  GXYLT1 WILD-TYPE     71     69     31     61
D55V2, multiclass
        clus
vv       GXYLT1 MUTATED GXYLT1 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              7               69
  CLUS_3              3               31
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GXYLT1 MUTATED        0      7      3      0      2
  GXYLT1 WILD-TYPE     16     55     48     65     53
D55V3, multiclass
        clus
vv       GXYLT1 MUTATED GXYLT1 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              7               55
  CLUS_3              3               48
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GXYLT1 MUTATED        2      5      4      1
  GXYLT1 WILD-TYPE     96     39     46     56
D55V4, multiclass
        clus
vv       GXYLT1 MUTATED GXYLT1 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              5               39
  CLUS_3              4               46
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GXYLT1 MUTATED        7      1      1      2      0
  GXYLT1 WILD-TYPE     55     58     39     35     59
D55V5, multiclass
        clus
vv       GXYLT1 MUTATED GXYLT1 WILD-TYPE
  CLUS_1              7               55
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              2               35
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GXYLT1 MUTATED        3      1      7
  GXYLT1 WILD-TYPE    103     53     90
D55V6, multiclass
        clus
vv       GXYLT1 MUTATED GXYLT1 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              1               53
  CLUS_3              7               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GXYLT1 MUTATED       10      2      0
  GXYLT1 WILD-TYPE    113     93     71
D55V7, multiclass
        clus
vv       GXYLT1 MUTATED GXYLT1 WILD-TYPE
  CLUS_1             10              113
  CLUS_2              2               93
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GXYLT1 MUTATED       10      1      1
  GXYLT1 WILD-TYPE    147     62     68
D55V8, multiclass
        clus
vv       GXYLT1 MUTATED GXYLT1 WILD-TYPE
  CLUS_1             10              147
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GXYLT1 MUTATED        0      1      5      4      0      1
  GXYLT1 WILD-TYPE     33     18     54     35     16     44
D55V9, multiclass
        clus
vv       GXYLT1 MUTATED GXYLT1 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               18
  CLUS_3              5               54
  CLUS_4              4               35
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GXYLT1 MUTATED        3      1      3      0      3      1
  GXYLT1 WILD-TYPE     44     38     32     32     20     34
D55V10, multiclass
        clus
vv       GXYLT1 MUTATED GXYLT1 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              1               38
  CLUS_3              3               32
  CLUS_4              0               32
  CLUS_5              3               20
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = IWS1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IWS1 MUTATED        0      9      0      2      1
  IWS1 WILD-TYPE     79    117     27     41     11
D56V1, multiclass
        clus
vv       IWS1 MUTATED IWS1 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            9            117
  CLUS_3            0             27
  CLUS_4            2             41
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IWS1 MUTATED        0      5      2      1
  IWS1 WILD-TYPE     71     71     32     62
D56V2, multiclass
        clus
vv       IWS1 MUTATED IWS1 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            5             71
  CLUS_3            2             32
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IWS1 MUTATED        0      5      3      0      2
  IWS1 WILD-TYPE     16     57     48     65     53
D56V3, multiclass
        clus
vv       IWS1 MUTATED IWS1 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            5             57
  CLUS_3            3             48
  CLUS_4            0             65
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IWS1 MUTATED        1      5      4      0
  IWS1 WILD-TYPE     97     39     46     57
D56V4, multiclass
        clus
vv       IWS1 MUTATED IWS1 WILD-TYPE
  CLUS_1            1             97
  CLUS_2            5             39
  CLUS_3            4             46
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IWS1 MUTATED        5      1      1      3      0
  IWS1 WILD-TYPE     57     58     39     34     59
D56V5, multiclass
        clus
vv       IWS1 MUTATED IWS1 WILD-TYPE
  CLUS_1            5             57
  CLUS_2            1             58
  CLUS_3            1             39
  CLUS_4            3             34
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IWS1 MUTATED        2      1      7
  IWS1 WILD-TYPE    104     53     90
D56V6, multiclass
        clus
vv       IWS1 MUTATED IWS1 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            1             53
  CLUS_3            7             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IWS1 MUTATED       10      1      1
  IWS1 WILD-TYPE    113     94     70
D56V7, multiclass
        clus
vv       IWS1 MUTATED IWS1 WILD-TYPE
  CLUS_1           10            113
  CLUS_2            1             94
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IWS1 MUTATED       11      1      0
  IWS1 WILD-TYPE    146     62     69
D56V8, multiclass
        clus
vv       IWS1 MUTATED IWS1 WILD-TYPE
  CLUS_1           11            146
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IWS1 MUTATED        0      0      2      2      0      1
  IWS1 WILD-TYPE     33     19     57     37     16     44
D56V9, multiclass
        clus
vv       IWS1 MUTATED IWS1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             19
  CLUS_3            2             57
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IWS1 MUTATED        2      0      1      1      1      0
  IWS1 WILD-TYPE     45     39     34     31     22     35
D56V10, multiclass
        clus
vv       IWS1 MUTATED IWS1 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = C7ORF50 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C7ORF50 MUTATED        0      7      2      1      0
  C7ORF50 WILD-TYPE     79    119     25     42     12
D57V1, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               7               119
  CLUS_3               2                25
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF50 MUTATED        0      8      2      0
  C7ORF50 WILD-TYPE     71     68     32     63
D57V2, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               8                68
  CLUS_3               2                32
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C7ORF50 MUTATED        1      3      3      0      1
  C7ORF50 WILD-TYPE     15     59     48     65     54
D57V3, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               3                59
  CLUS_3               3                48
  CLUS_4               0                65
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF50 MUTATED        1      6      1      0
  C7ORF50 WILD-TYPE     97     38     49     57
D57V4, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               6                38
  CLUS_3               1                49
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C7ORF50 MUTATED        6      0      1      0      0
  C7ORF50 WILD-TYPE     56     59     39     37     59
D57V5, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               6                56
  CLUS_2               0                59
  CLUS_3               1                39
  CLUS_4               0                37
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF50 MUTATED        0      0      7
  C7ORF50 WILD-TYPE    106     54     90
D57V6, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               0               106
  CLUS_2               0                54
  CLUS_3               7                90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF50 MUTATED        9      1      0
  C7ORF50 WILD-TYPE    114     94     71
D57V7, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               9               114
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF50 MUTATED        9      1      0
  C7ORF50 WILD-TYPE    148     62     69
D57V8, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               9               148
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C7ORF50 MUTATED        1      1      5      2      0      1
  C7ORF50 WILD-TYPE     32     18     54     37     16     44
D57V9, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                18
  CLUS_3               5                54
  CLUS_4               2                37
  CLUS_5               0                16
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C7ORF50 MUTATED        5      1      3      1      0      0
  C7ORF50 WILD-TYPE     42     38     32     31     23     35
D57V10, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               5                42
  CLUS_2               1                38
  CLUS_3               3                32
  CLUS_4               1                31
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = GAS6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAS6 MUTATED        3      9      1      2      1
  GAS6 WILD-TYPE     76    117     26     41     11
D58V1, multiclass
        clus
vv       GAS6 MUTATED GAS6 WILD-TYPE
  CLUS_1            3             76
  CLUS_2            9            117
  CLUS_3            1             26
  CLUS_4            2             41
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAS6 MUTATED        2      9      0      1
  GAS6 WILD-TYPE     69     67     34     62
D58V2, multiclass
        clus
vv       GAS6 MUTATED GAS6 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            9             67
  CLUS_3            0             34
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAS6 MUTATED        1      6      2      2      3
  GAS6 WILD-TYPE     15     56     49     63     52
D58V3, multiclass
        clus
vv       GAS6 MUTATED GAS6 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            6             56
  CLUS_3            2             49
  CLUS_4            2             63
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAS6 MUTATED        5      5      2      2
  GAS6 WILD-TYPE     93     39     48     55
D58V4, multiclass
        clus
vv       GAS6 MUTATED GAS6 WILD-TYPE
  CLUS_1            5             93
  CLUS_2            5             39
  CLUS_3            2             48
  CLUS_4            2             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAS6 MUTATED        6      2      1      1      1
  GAS6 WILD-TYPE     56     57     39     36     58
D58V5, multiclass
        clus
vv       GAS6 MUTATED GAS6 WILD-TYPE
  CLUS_1            6             56
  CLUS_2            2             57
  CLUS_3            1             39
  CLUS_4            1             36
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAS6 MUTATED        3      1      7
  GAS6 WILD-TYPE    103     53     90
D58V6, multiclass
        clus
vv       GAS6 MUTATED GAS6 WILD-TYPE
  CLUS_1            3            103
  CLUS_2            1             53
  CLUS_3            7             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAS6 MUTATED       11      2      3
  GAS6 WILD-TYPE    112     93     68
D58V7, multiclass
        clus
vv       GAS6 MUTATED GAS6 WILD-TYPE
  CLUS_1           11            112
  CLUS_2            2             93
  CLUS_3            3             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAS6 MUTATED       11      1      4
  GAS6 WILD-TYPE    146     62     65
D58V8, multiclass
        clus
vv       GAS6 MUTATED GAS6 WILD-TYPE
  CLUS_1           11            146
  CLUS_2            1             62
  CLUS_3            4             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GAS6 MUTATED        2      3      3      3      0      0
  GAS6 WILD-TYPE     31     16     56     36     16     45
D58V9, multiclass
        clus
vv       GAS6 MUTATED GAS6 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            3             16
  CLUS_3            3             56
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GAS6 MUTATED        4      0      3      2      1      1
  GAS6 WILD-TYPE     43     39     32     30     22     34
D58V10, multiclass
        clus
vv       GAS6 MUTATED GAS6 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            0             39
  CLUS_3            3             32
  CLUS_4            2             30
  CLUS_5            1             22
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = AKAP13 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKAP13 MUTATED        4     16      3      4      1
  AKAP13 WILD-TYPE     75    110     24     39     11
D59V1, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              4               75
  CLUS_2             16              110
  CLUS_3              3               24
  CLUS_4              4               39
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP13 MUTATED        4     13      0      2
  AKAP13 WILD-TYPE     67     63     34     61
D59V2, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              4               67
  CLUS_2             13               63
  CLUS_3              0               34
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKAP13 MUTATED        2      8      9      2      5
  AKAP13 WILD-TYPE     14     54     42     63     50
D59V3, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              2               14
  CLUS_2              8               54
  CLUS_3              9               42
  CLUS_4              2               63
  CLUS_5              5               50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP13 MUTATED        8     13      4      1
  AKAP13 WILD-TYPE     90     31     46     56
D59V4, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              8               90
  CLUS_2             13               31
  CLUS_3              4               46
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKAP13 MUTATED        9      2      5      6      3
  AKAP13 WILD-TYPE     53     57     35     31     56
D59V5, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              9               53
  CLUS_2              2               57
  CLUS_3              5               35
  CLUS_4              6               31
  CLUS_5              3               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKAP13 MUTATED        8      0     17
  AKAP13 WILD-TYPE     98     54     80
D59V6, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              8               98
  CLUS_2              0               54
  CLUS_3             17               80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKAP13 MUTATED       22      1      5
  AKAP13 WILD-TYPE    101     94     66
D59V7, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1             22              101
  CLUS_2              1               94
  CLUS_3              5               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKAP13 MUTATED       22      1      5
  AKAP13 WILD-TYPE    135     62     64
D59V8, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1             22              135
  CLUS_2              1               62
  CLUS_3              5               64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AKAP13 MUTATED        1      3      7      5      0      0
  AKAP13 WILD-TYPE     32     16     52     34     16     45
D59V9, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              3               16
  CLUS_3              7               52
  CLUS_4              5               34
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AKAP13 MUTATED        6      0      5      4      0      1
  AKAP13 WILD-TYPE     41     39     30     28     23     34
D59V10, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              6               41
  CLUS_2              0               39
  CLUS_3              5               30
  CLUS_4              4               28
  CLUS_5              0               23
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = PLAGL2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLAGL2 MUTATED        1      4      1      0      0
  PLAGL2 WILD-TYPE     78    122     26     43     12
D60V1, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              4              122
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLAGL2 MUTATED        1      3      1      2
  PLAGL2 WILD-TYPE     70     73     33     61
D60V2, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              3               73
  CLUS_3              1               33
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLAGL2 MUTATED        1      0      1      2      2
  PLAGL2 WILD-TYPE     15     62     50     63     53
D60V3, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              0               62
  CLUS_3              1               50
  CLUS_4              2               63
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLAGL2 MUTATED        2      3      0      1
  PLAGL2 WILD-TYPE     96     41     50     56
D60V4, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              3               41
  CLUS_3              0               50
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLAGL2 MUTATED        3      1      0      1      1
  PLAGL2 WILD-TYPE     59     58     40     36     58
D60V5, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              1               36
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLAGL2 MUTATED        3      0      3
  PLAGL2 WILD-TYPE    103     54     94
D60V6, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              0               54
  CLUS_3              3               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLAGL2 MUTATED        3      2      2
  PLAGL2 WILD-TYPE    120     93     69
D60V7, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              3              120
  CLUS_2              2               93
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLAGL2 MUTATED        5      1      1
  PLAGL2 WILD-TYPE    152     62     68
D60V8, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              5              152
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLAGL2 MUTATED        1      0      2      1      2      1
  PLAGL2 WILD-TYPE     32     19     57     38     14     44
D60V9, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               19
  CLUS_3              2               57
  CLUS_4              1               38
  CLUS_5              2               14
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLAGL2 MUTATED        2      1      2      1      0      1
  PLAGL2 WILD-TYPE     45     38     33     31     23     34
D60V10, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              1               38
  CLUS_3              2               33
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = C14ORF43 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF43 MUTATED        0     18      0      2      0
  C14ORF43 WILD-TYPE     79    108     27     41     12
D61V1, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                0                 79
  CLUS_2               18                108
  CLUS_3                0                 27
  CLUS_4                2                 41
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF43 MUTATED        0     13      1      2
  C14ORF43 WILD-TYPE     71     63     33     61
D61V2, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                0                 71
  CLUS_2               13                 63
  CLUS_3                1                 33
  CLUS_4                2                 61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF43 MUTATED        1      5      5      1      5
  C14ORF43 WILD-TYPE     15     57     46     64     50
D61V3, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                5                 57
  CLUS_3                5                 46
  CLUS_4                1                 64
  CLUS_5                5                 50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF43 MUTATED        3     12      1      1
  C14ORF43 WILD-TYPE     95     32     49     56
D61V4, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                3                 95
  CLUS_2               12                 32
  CLUS_3                1                 49
  CLUS_4                1                 56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF43 MUTATED        9      2      2      2      0
  C14ORF43 WILD-TYPE     53     57     38     35     59
D61V5, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                9                 53
  CLUS_2                2                 57
  CLUS_3                2                 38
  CLUS_4                2                 35
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF43 MUTATED        3      1     11
  C14ORF43 WILD-TYPE    103     53     86
D61V6, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                3                103
  CLUS_2                1                 53
  CLUS_3               11                 86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF43 MUTATED       16      2      2
  C14ORF43 WILD-TYPE    107     93     69
D61V7, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1               16                107
  CLUS_2                2                 93
  CLUS_3                2                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF43 MUTATED       18      2      0
  C14ORF43 WILD-TYPE    139     61     69
D61V8, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1               18                139
  CLUS_2                2                 61
  CLUS_3                0                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C14ORF43 MUTATED        3      2      4      4      0      1
  C14ORF43 WILD-TYPE     30     17     55     35     16     44
D61V9, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                3                 30
  CLUS_2                2                 17
  CLUS_3                4                 55
  CLUS_4                4                 35
  CLUS_5                0                 16
  CLUS_6                1                 44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C14ORF43 MUTATED        7      1      3      1      2      0
  C14ORF43 WILD-TYPE     40     38     32     31     21     35
D61V10, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                7                 40
  CLUS_2                1                 38
  CLUS_3                3                 32
  CLUS_4                1                 31
  CLUS_5                2                 21
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = C1QTNF5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1QTNF5 MUTATED        0      3      2      0      0
  C1QTNF5 WILD-TYPE     79    123     25     43     12
D62V1, multiclass
        clus
vv       C1QTNF5 MUTATED C1QTNF5 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               3               123
  CLUS_3               2                25
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1QTNF5 MUTATED        0      2      2      0
  C1QTNF5 WILD-TYPE     71     74     32     63
D62V2, multiclass
        clus
vv       C1QTNF5 MUTATED C1QTNF5 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               2                74
  CLUS_3               2                32
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1QTNF5 MUTATED        0      2      2      0      1
  C1QTNF5 WILD-TYPE     16     60     49     65     54
D62V3, multiclass
        clus
vv       C1QTNF5 MUTATED C1QTNF5 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               2                60
  CLUS_3               2                49
  CLUS_4               0                65
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1QTNF5 MUTATED        0      3      2      0
  C1QTNF5 WILD-TYPE     98     41     48     57
D62V4, multiclass
        clus
vv       C1QTNF5 MUTATED C1QTNF5 WILD-TYPE
  CLUS_1               0                98
  CLUS_2               3                41
  CLUS_3               2                48
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1QTNF5 MUTATED        3      0      0      1      0
  C1QTNF5 WILD-TYPE     59     59     40     36     59
D62V5, multiclass
        clus
vv       C1QTNF5 MUTATED C1QTNF5 WILD-TYPE
  CLUS_1               3                59
  CLUS_2               0                59
  CLUS_3               0                40
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1QTNF5 MUTATED        1      0      3
  C1QTNF5 WILD-TYPE    105     54     94
D62V6, multiclass
        clus
vv       C1QTNF5 MUTATED C1QTNF5 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               0                54
  CLUS_3               3                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1QTNF5 MUTATED        4      1      0
  C1QTNF5 WILD-TYPE    119     94     71
D62V7, multiclass
        clus
vv       C1QTNF5 MUTATED C1QTNF5 WILD-TYPE
  CLUS_1               4               119
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1QTNF5 MUTATED        4      1      0
  C1QTNF5 WILD-TYPE    153     62     69
D62V8, multiclass
        clus
vv       C1QTNF5 MUTATED C1QTNF5 WILD-TYPE
  CLUS_1               4               153
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C1QTNF5 MUTATED        0      0      2      0      0      1
  C1QTNF5 WILD-TYPE     33     19     57     39     16     44
D62V9, multiclass
        clus
vv       C1QTNF5 MUTATED C1QTNF5 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               0                19
  CLUS_3               2                57
  CLUS_4               0                39
  CLUS_5               0                16
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C1QTNF5 MUTATED        1      1      1      0      0      0
  C1QTNF5 WILD-TYPE     46     38     34     32     23     35
D62V10, multiclass
        clus
vv       C1QTNF5 MUTATED C1QTNF5 WILD-TYPE
  CLUS_1               1                46
  CLUS_2               1                38
  CLUS_3               1                34
  CLUS_4               0                32
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = WDR5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR5 MUTATED        0      5      1      1      0
  WDR5 WILD-TYPE     79    121     26     42     12
D63V1, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            5            121
  CLUS_3            1             26
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR5 MUTATED        1      2      0      1
  WDR5 WILD-TYPE     70     74     34     62
D63V2, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            2             74
  CLUS_3            0             34
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR5 MUTATED        0      2      1      2      2
  WDR5 WILD-TYPE     16     60     50     63     53
D63V3, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            2             60
  CLUS_3            1             50
  CLUS_4            2             63
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR5 MUTATED        0      3      2      2
  WDR5 WILD-TYPE     98     41     48     55
D63V4, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            0             98
  CLUS_2            3             41
  CLUS_3            2             48
  CLUS_4            2             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR5 MUTATED        1      2      1      1      1
  WDR5 WILD-TYPE     61     57     39     36     58
D63V5, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            1             61
  CLUS_2            2             57
  CLUS_3            1             39
  CLUS_4            1             36
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WDR5 MUTATED        3      1      2
  WDR5 WILD-TYPE    103     53     95
D63V6, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            3            103
  CLUS_2            1             53
  CLUS_3            2             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WDR5 MUTATED        6      1      0
  WDR5 WILD-TYPE    117     94     71
D63V7, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            6            117
  CLUS_2            1             94
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WDR5 MUTATED        4      2      1
  WDR5 WILD-TYPE    153     61     68
D63V8, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            4            153
  CLUS_2            2             61
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WDR5 MUTATED        1      1      2      0      0      0
  WDR5 WILD-TYPE     32     18     57     39     16     45
D63V9, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            2             57
  CLUS_4            0             39
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WDR5 MUTATED        2      0      1      1      0      0
  WDR5 WILD-TYPE     45     39     34     31     23     35
D63V10, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            1             31
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = PRSS36 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRSS36 MUTATED        0      7      2      1      1
  PRSS36 WILD-TYPE     79    119     25     42     11
D64V1, multiclass
        clus
vv       PRSS36 MUTATED PRSS36 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              7              119
  CLUS_3              2               25
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRSS36 MUTATED        0      5      1      0
  PRSS36 WILD-TYPE     71     71     33     63
D64V2, multiclass
        clus
vv       PRSS36 MUTATED PRSS36 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              5               71
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRSS36 MUTATED        1      4      1      1      4
  PRSS36 WILD-TYPE     15     58     50     64     51
D64V3, multiclass
        clus
vv       PRSS36 MUTATED PRSS36 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              4               58
  CLUS_3              1               50
  CLUS_4              1               64
  CLUS_5              4               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRSS36 MUTATED        3      5      2      1
  PRSS36 WILD-TYPE     95     39     48     56
D64V4, multiclass
        clus
vv       PRSS36 MUTATED PRSS36 WILD-TYPE
  CLUS_1              3               95
  CLUS_2              5               39
  CLUS_3              2               48
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRSS36 MUTATED        4      1      2      1      0
  PRSS36 WILD-TYPE     58     58     38     36     59
D64V5, multiclass
        clus
vv       PRSS36 MUTATED PRSS36 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              1               58
  CLUS_3              2               38
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRSS36 MUTATED        1      1      6
  PRSS36 WILD-TYPE    105     53     91
D64V6, multiclass
        clus
vv       PRSS36 MUTATED PRSS36 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              1               53
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRSS36 MUTATED        8      3      0
  PRSS36 WILD-TYPE    115     92     71
D64V7, multiclass
        clus
vv       PRSS36 MUTATED PRSS36 WILD-TYPE
  CLUS_1              8              115
  CLUS_2              3               92
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRSS36 MUTATED        7      3      1
  PRSS36 WILD-TYPE    150     60     68
D64V8, multiclass
        clus
vv       PRSS36 MUTATED PRSS36 WILD-TYPE
  CLUS_1              7              150
  CLUS_2              3               60
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRSS36 MUTATED        1      0      3      1      0      1
  PRSS36 WILD-TYPE     32     19     56     38     16     44
D64V9, multiclass
        clus
vv       PRSS36 MUTATED PRSS36 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               19
  CLUS_3              3               56
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRSS36 MUTATED        2      1      3      0      0      0
  PRSS36 WILD-TYPE     45     38     32     32     23     35
D64V10, multiclass
        clus
vv       PRSS36 MUTATED PRSS36 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              1               38
  CLUS_3              3               32
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = PAFAH1B1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAFAH1B1 MUTATED        0     10      1      0      0
  PAFAH1B1 WILD-TYPE     79    116     26     43     12
D65V1, multiclass
        clus
vv       PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE
  CLUS_1                0                 79
  CLUS_2               10                116
  CLUS_3                1                 26
  CLUS_4                0                 43
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAFAH1B1 MUTATED        0      7      1      1
  PAFAH1B1 WILD-TYPE     71     69     33     62
D65V2, multiclass
        clus
vv       PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE
  CLUS_1                0                 71
  CLUS_2                7                 69
  CLUS_3                1                 33
  CLUS_4                1                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAFAH1B1 MUTATED        1      1      5      0      3
  PAFAH1B1 WILD-TYPE     15     61     46     65     52
D65V3, multiclass
        clus
vv       PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                1                 61
  CLUS_3                5                 46
  CLUS_4                0                 65
  CLUS_5                3                 52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAFAH1B1 MUTATED        2      7      1      0
  PAFAH1B1 WILD-TYPE     96     37     49     57
D65V4, multiclass
        clus
vv       PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE
  CLUS_1                2                 96
  CLUS_2                7                 37
  CLUS_3                1                 49
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAFAH1B1 MUTATED        7      1      2      1      0
  PAFAH1B1 WILD-TYPE     55     58     38     36     59
D65V5, multiclass
        clus
vv       PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE
  CLUS_1                7                 55
  CLUS_2                1                 58
  CLUS_3                2                 38
  CLUS_4                1                 36
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PAFAH1B1 MUTATED        2      0      9
  PAFAH1B1 WILD-TYPE    104     54     88
D65V6, multiclass
        clus
vv       PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE
  CLUS_1                2                104
  CLUS_2                0                 54
  CLUS_3                9                 88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PAFAH1B1 MUTATED       10      1      1
  PAFAH1B1 WILD-TYPE    113     94     70
D65V7, multiclass
        clus
vv       PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE
  CLUS_1               10                113
  CLUS_2                1                 94
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PAFAH1B1 MUTATED       10      1      1
  PAFAH1B1 WILD-TYPE    147     62     68
D65V8, multiclass
        clus
vv       PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE
  CLUS_1               10                147
  CLUS_2                1                 62
  CLUS_3                1                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PAFAH1B1 MUTATED        2      1      3      2      0      1
  PAFAH1B1 WILD-TYPE     31     18     56     37     16     44
D65V9, multiclass
        clus
vv       PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                1                 18
  CLUS_3                3                 56
  CLUS_4                2                 37
  CLUS_5                0                 16
  CLUS_6                1                 44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PAFAH1B1 MUTATED        4      1      2      1      1      0
  PAFAH1B1 WILD-TYPE     43     38     33     31     22     35
D65V10, multiclass
        clus
vv       PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE
  CLUS_1                4                 43
  CLUS_2                1                 38
  CLUS_3                2                 33
  CLUS_4                1                 31
  CLUS_5                1                 22
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = EPHA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA2 MUTATED        1     14      4      2      1
  EPHA2 WILD-TYPE     78    112     23     41     11
D66V1, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             1              78
  CLUS_2            14             112
  CLUS_3             4              23
  CLUS_4             2              41
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA2 MUTATED        3     13      2      2
  EPHA2 WILD-TYPE     68     63     32     61
D66V2, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             3              68
  CLUS_2            13              63
  CLUS_3             2              32
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA2 MUTATED        3      5      4      0      3
  EPHA2 WILD-TYPE     13     57     47     65     52
D66V3, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             3              13
  CLUS_2             5              57
  CLUS_3             4              47
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA2 MUTATED        3      8      4      0
  EPHA2 WILD-TYPE     95     36     46     57
D66V4, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             8              36
  CLUS_3             4              46
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA2 MUTATED        9      0      4      8      1
  EPHA2 WILD-TYPE     53     59     36     29     58
D66V5, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             9              53
  CLUS_2             0              59
  CLUS_3             4              36
  CLUS_4             8              29
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED        2      1     19
  EPHA2 WILD-TYPE    104     53     78
D66V6, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              53
  CLUS_3            19              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED       19      2      2
  EPHA2 WILD-TYPE    104     93     69
D66V7, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1            19             104
  CLUS_2             2              93
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED       21      1      1
  EPHA2 WILD-TYPE    136     62     68
D66V8, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1            21             136
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPHA2 MUTATED        3      7      3      4      0      1
  EPHA2 WILD-TYPE     30     12     56     35     16     44
D66V9, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             7              12
  CLUS_3             3              56
  CLUS_4             4              35
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPHA2 MUTATED       11      2      2      0      3      0
  EPHA2 WILD-TYPE     36     37     33     32     20     35
D66V10, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1            11              36
  CLUS_2             2              37
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             3              20
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = SLC16A6 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC16A6 MUTATED        0      6      0      1      0
  SLC16A6 WILD-TYPE     79    120     27     42     12
D67V1, multiclass
        clus
vv       SLC16A6 MUTATED SLC16A6 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               6               120
  CLUS_3               0                27
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A6 MUTATED        0      5      1      0
  SLC16A6 WILD-TYPE     71     71     33     63
D67V2, multiclass
        clus
vv       SLC16A6 MUTATED SLC16A6 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               5                71
  CLUS_3               1                33
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC16A6 MUTATED        0      1      1      1      3
  SLC16A6 WILD-TYPE     16     61     50     64     52
D67V3, multiclass
        clus
vv       SLC16A6 MUTATED SLC16A6 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               1                61
  CLUS_3               1                50
  CLUS_4               1                64
  CLUS_5               3                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A6 MUTATED        2      2      1      1
  SLC16A6 WILD-TYPE     96     42     49     56
D67V4, multiclass
        clus
vv       SLC16A6 MUTATED SLC16A6 WILD-TYPE
  CLUS_1               2                96
  CLUS_2               2                42
  CLUS_3               1                49
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC16A6 MUTATED        4      1      1      1      0
  SLC16A6 WILD-TYPE     58     58     39     36     59
D67V5, multiclass
        clus
vv       SLC16A6 MUTATED SLC16A6 WILD-TYPE
  CLUS_1               4                58
  CLUS_2               1                58
  CLUS_3               1                39
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A6 MUTATED        2      1      4
  SLC16A6 WILD-TYPE    104     53     93
D67V6, multiclass
        clus
vv       SLC16A6 MUTATED SLC16A6 WILD-TYPE
  CLUS_1               2               104
  CLUS_2               1                53
  CLUS_3               4                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A6 MUTATED        5      2      0
  SLC16A6 WILD-TYPE    118     93     71
D67V7, multiclass
        clus
vv       SLC16A6 MUTATED SLC16A6 WILD-TYPE
  CLUS_1               5               118
  CLUS_2               2                93
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A6 MUTATED        7      0      0
  SLC16A6 WILD-TYPE    150     63     69
D67V8, multiclass
        clus
vv       SLC16A6 MUTATED SLC16A6 WILD-TYPE
  CLUS_1               7               150
  CLUS_2               0                63
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC16A6 MUTATED        2      1      0      2      0      0
  SLC16A6 WILD-TYPE     31     18     59     37     16     45
D67V9, multiclass
        clus
vv       SLC16A6 MUTATED SLC16A6 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               1                18
  CLUS_3               0                59
  CLUS_4               2                37
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC16A6 MUTATED        2      0      0      2      1      0
  SLC16A6 WILD-TYPE     45     39     35     30     22     35
D67V10, multiclass
        clus
vv       SLC16A6 MUTATED SLC16A6 WILD-TYPE
  CLUS_1               2                45
  CLUS_2               0                39
  CLUS_3               0                35
  CLUS_4               2                30
  CLUS_5               1                22
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = C9ORF131 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF131 MUTATED        1     10      0      0      2
  C9ORF131 WILD-TYPE     78    116     27     43     10
D68V1, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                1                 78
  CLUS_2               10                116
  CLUS_3                0                 27
  CLUS_4                0                 43
  CLUS_5                2                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF131 MUTATED        0      7      1      1
  C9ORF131 WILD-TYPE     71     69     33     62
D68V2, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                0                 71
  CLUS_2                7                 69
  CLUS_3                1                 33
  CLUS_4                1                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF131 MUTATED        0      4      3      1      2
  C9ORF131 WILD-TYPE     16     58     48     64     53
D68V3, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                4                 58
  CLUS_3                3                 48
  CLUS_4                1                 64
  CLUS_5                2                 53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF131 MUTATED        1      5      3      1
  C9ORF131 WILD-TYPE     97     39     47     56
D68V4, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                1                 97
  CLUS_2                5                 39
  CLUS_3                3                 47
  CLUS_4                1                 56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF131 MUTATED        5      1      1      3      0
  C9ORF131 WILD-TYPE     57     58     39     34     59
D68V5, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                5                 57
  CLUS_2                1                 58
  CLUS_3                1                 39
  CLUS_4                3                 34
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C9ORF131 MUTATED        1      1      8
  C9ORF131 WILD-TYPE    105     53     89
D68V6, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                1                105
  CLUS_2                1                 53
  CLUS_3                8                 89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C9ORF131 MUTATED       10      2      1
  C9ORF131 WILD-TYPE    113     93     70
D68V7, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1               10                113
  CLUS_2                2                 93
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C9ORF131 MUTATED       10      2      1
  C9ORF131 WILD-TYPE    147     61     68
D68V8, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1               10                147
  CLUS_2                2                 61
  CLUS_3                1                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C9ORF131 MUTATED        1      1      4      1      0      0
  C9ORF131 WILD-TYPE     32     18     55     38     16     45
D68V9, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                1                 18
  CLUS_3                4                 55
  CLUS_4                1                 38
  CLUS_5                0                 16
  CLUS_6                0                 45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C9ORF131 MUTATED        2      0      2      1      1      1
  C9ORF131 WILD-TYPE     45     39     33     31     22     34
D68V10, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                2                 45
  CLUS_2                0                 39
  CLUS_3                2                 33
  CLUS_4                1                 31
  CLUS_5                1                 22
  CLUS_6                1                 34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = WNT16 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNT16 MUTATED        0     12      1      0      0
  WNT16 WILD-TYPE     79    114     26     43     12
D69V1, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             0              79
  CLUS_2            12             114
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT16 MUTATED        0      7      2      1
  WNT16 WILD-TYPE     71     69     32     62
D69V2, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             7              69
  CLUS_3             2              32
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNT16 MUTATED        1      5      3      0      2
  WNT16 WILD-TYPE     15     57     48     65     53
D69V3, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             5              57
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT16 MUTATED        2      6      3      0
  WNT16 WILD-TYPE     96     38     47     57
D69V4, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             6              38
  CLUS_3             3              47
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNT16 MUTATED       10      1      0      1      0
  WNT16 WILD-TYPE     52     58     40     36     59
D69V5, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1            10              52
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WNT16 MUTATED        3      0      9
  WNT16 WILD-TYPE    103     54     88
D69V6, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             9              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WNT16 MUTATED       12      1      0
  WNT16 WILD-TYPE    111     94     71
D69V7, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1            12             111
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WNT16 MUTATED       13      0      0
  WNT16 WILD-TYPE    144     63     69
D69V8, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1            13             144
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WNT16 MUTATED        2      2      2      2      0      0
  WNT16 WILD-TYPE     31     17     57     37     16     45
D69V9, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             2              17
  CLUS_3             2              57
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WNT16 MUTATED        4      0      2      0      2      0
  WNT16 WILD-TYPE     43     39     33     32     21     35
D69V10, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = SPTY2D1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPTY2D1 MUTATED        3      9      2      1      0
  SPTY2D1 WILD-TYPE     76    117     25     42     12
D70V1, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               3                76
  CLUS_2               9               117
  CLUS_3               2                25
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTY2D1 MUTATED        3      8      0      2
  SPTY2D1 WILD-TYPE     68     68     34     61
D70V2, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               3                68
  CLUS_2               8                68
  CLUS_3               0                34
  CLUS_4               2                61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPTY2D1 MUTATED        3      5      3      0      3
  SPTY2D1 WILD-TYPE     13     57     48     65     52
D70V3, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               3                13
  CLUS_2               5                57
  CLUS_3               3                48
  CLUS_4               0                65
  CLUS_5               3                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTY2D1 MUTATED        5      6      3      0
  SPTY2D1 WILD-TYPE     93     38     47     57
D70V4, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               5                93
  CLUS_2               6                38
  CLUS_3               3                47
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPTY2D1 MUTATED        7      0      2      2      1
  SPTY2D1 WILD-TYPE     55     59     38     35     58
D70V5, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               7                55
  CLUS_2               0                59
  CLUS_3               2                38
  CLUS_4               2                35
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPTY2D1 MUTATED        3      1      8
  SPTY2D1 WILD-TYPE    103     53     89
D70V6, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               3               103
  CLUS_2               1                53
  CLUS_3               8                89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPTY2D1 MUTATED        9      2      4
  SPTY2D1 WILD-TYPE    114     93     67
D70V7, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               9               114
  CLUS_2               2                93
  CLUS_3               4                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPTY2D1 MUTATED       10      2      3
  SPTY2D1 WILD-TYPE    147     61     66
D70V8, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1              10               147
  CLUS_2               2                61
  CLUS_3               3                66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPTY2D1 MUTATED        2      1      5      5      0      0
  SPTY2D1 WILD-TYPE     31     18     54     34     16     45
D70V9, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               1                18
  CLUS_3               5                54
  CLUS_4               5                34
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPTY2D1 MUTATED        6      0      4      0      2      1
  SPTY2D1 WILD-TYPE     41     39     31     32     21     34
D70V10, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               6                41
  CLUS_2               0                39
  CLUS_3               4                31
  CLUS_4               0                32
  CLUS_5               2                21
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = GPSM3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPSM3 MUTATED        1      6      1      2      2
  GPSM3 WILD-TYPE     78    120     26     41     10
D71V1, multiclass
        clus
vv       GPSM3 MUTATED GPSM3 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             6             120
  CLUS_3             1              26
  CLUS_4             2              41
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPSM3 MUTATED        1      7      0      1
  GPSM3 WILD-TYPE     70     69     34     62
D71V2, multiclass
        clus
vv       GPSM3 MUTATED GPSM3 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             7              69
  CLUS_3             0              34
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPSM3 MUTATED        0      3      1      0      4
  GPSM3 WILD-TYPE     16     59     50     65     51
D71V3, multiclass
        clus
vv       GPSM3 MUTATED GPSM3 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              59
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPSM3 MUTATED        2      3      3      0
  GPSM3 WILD-TYPE     96     41     47     57
D71V4, multiclass
        clus
vv       GPSM3 MUTATED GPSM3 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             3              41
  CLUS_3             3              47
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPSM3 MUTATED        3      0      3      4      1
  GPSM3 WILD-TYPE     59     59     37     33     58
D71V5, multiclass
        clus
vv       GPSM3 MUTATED GPSM3 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              59
  CLUS_3             3              37
  CLUS_4             4              33
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPSM3 MUTATED        1      1      9
  GPSM3 WILD-TYPE    105     53     88
D71V6, multiclass
        clus
vv       GPSM3 MUTATED GPSM3 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             1              53
  CLUS_3             9              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPSM3 MUTATED        9      1      2
  GPSM3 WILD-TYPE    114     94     69
D71V7, multiclass
        clus
vv       GPSM3 MUTATED GPSM3 WILD-TYPE
  CLUS_1             9             114
  CLUS_2             1              94
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPSM3 MUTATED       10      0      2
  GPSM3 WILD-TYPE    147     63     67
D71V8, multiclass
        clus
vv       GPSM3 MUTATED GPSM3 WILD-TYPE
  CLUS_1            10             147
  CLUS_2             0              63
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPSM3 MUTATED        1      2      0      2      0      0
  GPSM3 WILD-TYPE     32     17     59     37     16     45
D71V9, multiclass
        clus
vv       GPSM3 MUTATED GPSM3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              17
  CLUS_3             0              59
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPSM3 MUTATED        3      0      0      1      1      0
  GPSM3 WILD-TYPE     44     39     35     31     22     35
D71V10, multiclass
        clus
vv       GPSM3 MUTATED GPSM3 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             0              35
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = ZNF878 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF878 MUTATED        0     10      0      1      1
  ZNF878 WILD-TYPE     79    116     27     42     11
D72V1, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              0               79
  CLUS_2             10              116
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF878 MUTATED        0      9      0      0
  ZNF878 WILD-TYPE     71     67     34     63
D72V2, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              9               67
  CLUS_3              0               34
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF878 MUTATED        0      5      4      0      1
  ZNF878 WILD-TYPE     16     57     47     65     54
D72V3, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              5               57
  CLUS_3              4               47
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF878 MUTATED        1      8      1      0
  ZNF878 WILD-TYPE     97     36     49     57
D72V4, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              8               36
  CLUS_3              1               49
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF878 MUTATED        8      0      0      1      0
  ZNF878 WILD-TYPE     54     59     40     36     59
D72V5, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              8               54
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF878 MUTATED        0      0      9
  ZNF878 WILD-TYPE    106     54     88
D72V6, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              0              106
  CLUS_2              0               54
  CLUS_3              9               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF878 MUTATED       11      1      0
  ZNF878 WILD-TYPE    112     94     71
D72V7, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1             11              112
  CLUS_2              1               94
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF878 MUTATED       11      1      0
  ZNF878 WILD-TYPE    146     62     69
D72V8, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1             11              146
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF878 MUTATED        1      1      4      2      0      0
  ZNF878 WILD-TYPE     32     18     55     37     16     45
D72V9, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              4               55
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF878 MUTATED        3      0      2      2      1      0
  ZNF878 WILD-TYPE     44     39     33     30     22     35
D72V10, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              2               30
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = CCDC88A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC88A MUTATED        1     15      1      1      1
  CCDC88A WILD-TYPE     78    111     26     42     11
D73V1, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               1                78
  CLUS_2              15               111
  CLUS_3               1                26
  CLUS_4               1                42
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC88A MUTATED        0      9      4      1
  CCDC88A WILD-TYPE     71     67     30     62
D73V2, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               0                71
  CLUS_2               9                67
  CLUS_3               4                30
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC88A MUTATED        1      7      2      1      6
  CCDC88A WILD-TYPE     15     55     49     64     49
D73V3, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               1                15
  CLUS_2               7                55
  CLUS_3               2                49
  CLUS_4               1                64
  CLUS_5               6                49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC88A MUTATED        3      7      5      2
  CCDC88A WILD-TYPE     95     37     45     55
D73V4, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               3                95
  CLUS_2               7                37
  CLUS_3               5                45
  CLUS_4               2                55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC88A MUTATED       11      2      3      3      0
  CCDC88A WILD-TYPE     51     57     37     34     59
D73V5, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1              11                51
  CLUS_2               2                57
  CLUS_3               3                37
  CLUS_4               3                34
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC88A MUTATED        7      0     12
  CCDC88A WILD-TYPE     99     54     85
D73V6, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               7                99
  CLUS_2               0                54
  CLUS_3              12                85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC88A MUTATED       18      1      1
  CCDC88A WILD-TYPE    105     94     70
D73V7, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1              18               105
  CLUS_2               1                94
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC88A MUTATED       18      1      1
  CCDC88A WILD-TYPE    139     62     68
D73V8, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1              18               139
  CLUS_2               1                62
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC88A MUTATED        2      2      7      1      0      1
  CCDC88A WILD-TYPE     31     17     52     38     16     44
D73V9, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               2                31
  CLUS_2               2                17
  CLUS_3               7                52
  CLUS_4               1                38
  CLUS_5               0                16
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC88A MUTATED        5      1      5      1      1      0
  CCDC88A WILD-TYPE     42     38     30     31     22     35
D73V10, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               5                42
  CLUS_2               1                38
  CLUS_3               5                30
  CLUS_4               1                31
  CLUS_5               1                22
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = FHDC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHDC1 MUTATED        0     13      1      0      1
  FHDC1 WILD-TYPE     79    113     26     43     11
D74V1, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2            13             113
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHDC1 MUTATED        0      6      3      1
  FHDC1 WILD-TYPE     71     70     31     62
D74V2, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             6              70
  CLUS_3             3              31
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHDC1 MUTATED        0      7      1      2      4
  FHDC1 WILD-TYPE     16     55     50     63     51
D74V3, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             7              55
  CLUS_3             1              50
  CLUS_4             2              63
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHDC1 MUTATED        3      3      6      2
  FHDC1 WILD-TYPE     95     41     44     55
D74V4, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             3              41
  CLUS_3             6              44
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHDC1 MUTATED        7      2      2      4      0
  FHDC1 WILD-TYPE     55     57     38     33     59
D74V5, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             7              55
  CLUS_2             2              57
  CLUS_3             2              38
  CLUS_4             4              33
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FHDC1 MUTATED        3      2     10
  FHDC1 WILD-TYPE    103     52     87
D74V6, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             2              52
  CLUS_3            10              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FHDC1 MUTATED       11      4      0
  FHDC1 WILD-TYPE    112     91     71
D74V7, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1            11             112
  CLUS_2             4              91
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FHDC1 MUTATED       12      1      2
  FHDC1 WILD-TYPE    145     62     67
D74V8, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1            12             145
  CLUS_2             1              62
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FHDC1 MUTATED        0      2      2      4      1      0
  FHDC1 WILD-TYPE     33     17     57     35     15     45
D74V9, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              17
  CLUS_3             2              57
  CLUS_4             4              35
  CLUS_5             1              15
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FHDC1 MUTATED        3      0      1      1      3      1
  FHDC1 WILD-TYPE     44     39     34     31     20     34
D74V10, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             1              31
  CLUS_5             3              20
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = ARHGAP5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGAP5 MUTATED        0     12      2      1      2
  ARHGAP5 WILD-TYPE     79    114     25     42     10
D75V1, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               0                79
  CLUS_2              12               114
  CLUS_3               2                25
  CLUS_4               1                42
  CLUS_5               2                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP5 MUTATED        0      8      3      3
  ARHGAP5 WILD-TYPE     71     68     31     60
D75V2, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               8                68
  CLUS_3               3                31
  CLUS_4               3                60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGAP5 MUTATED        0      5      3      3      3
  ARHGAP5 WILD-TYPE     16     57     48     62     52
D75V3, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               5                57
  CLUS_3               3                48
  CLUS_4               3                62
  CLUS_5               3                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP5 MUTATED        5      5      2      2
  ARHGAP5 WILD-TYPE     93     39     48     55
D75V4, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               5                93
  CLUS_2               5                39
  CLUS_3               2                48
  CLUS_4               2                55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGAP5 MUTATED        9      2      1      3      0
  ARHGAP5 WILD-TYPE     53     57     39     34     59
D75V5, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               9                53
  CLUS_2               2                57
  CLUS_3               1                39
  CLUS_4               3                34
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGAP5 MUTATED        3      3      9
  ARHGAP5 WILD-TYPE    103     51     88
D75V6, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               3               103
  CLUS_2               3                51
  CLUS_3               9                88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGAP5 MUTATED       11      5      1
  ARHGAP5 WILD-TYPE    112     90     70
D75V7, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1              11               112
  CLUS_2               5                90
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGAP5 MUTATED       13      2      2
  ARHGAP5 WILD-TYPE    144     61     67
D75V8, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1              13               144
  CLUS_2               2                61
  CLUS_3               2                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARHGAP5 MUTATED        1      3      1      3      2      1
  ARHGAP5 WILD-TYPE     32     16     58     36     14     44
D75V9, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               3                16
  CLUS_3               1                58
  CLUS_4               3                36
  CLUS_5               2                14
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARHGAP5 MUTATED        5      1      1      0      2      2
  ARHGAP5 WILD-TYPE     42     38     34     32     21     33
D75V10, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               5                42
  CLUS_2               1                38
  CLUS_3               1                34
  CLUS_4               0                32
  CLUS_5               2                21
  CLUS_6               2                33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = CRYGA MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRYGA MUTATED        0      7      1      1      1
  CRYGA WILD-TYPE     79    119     26     42     11
D76V1, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             0              79
  CLUS_2             7             119
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRYGA MUTATED        0      6      2      1
  CRYGA WILD-TYPE     71     70     32     62
D76V2, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             0              71
  CLUS_2             6              70
  CLUS_3             2              32
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRYGA MUTATED        1      2      4      0      1
  CRYGA WILD-TYPE     15     60     47     65     54
D76V3, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              60
  CLUS_3             4              47
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRYGA MUTATED        2      5      1      0
  CRYGA WILD-TYPE     96     39     49     57
D76V4, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             2              96
  CLUS_2             5              39
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRYGA MUTATED        4      1      1      2      0
  CRYGA WILD-TYPE     58     58     39     35     59
D76V5, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             4              58
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CRYGA MUTATED        1      1      6
  CRYGA WILD-TYPE    105     53     91
D76V6, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             1             105
  CLUS_2             1              53
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CRYGA MUTATED        7      2      1
  CRYGA WILD-TYPE    116     93     70
D76V7, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             7             116
  CLUS_2             2              93
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CRYGA MUTATED        8      2      0
  CRYGA WILD-TYPE    149     61     69
D76V8, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             8             149
  CLUS_2             2              61
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CRYGA MUTATED        1      1      2      1      0      2
  CRYGA WILD-TYPE     32     18     57     38     16     43
D76V9, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             2              57
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             2              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CRYGA MUTATED        2      2      1      1      1      0
  CRYGA WILD-TYPE     45     37     34     31     22     35
D76V10, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             2              45
  CLUS_2             2              37
  CLUS_3             1              34
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = CDC14A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC14A MUTATED        0     13      1      1      0
  CDC14A WILD-TYPE     79    113     26     42     12
D77V1, multiclass
        clus
vv       CDC14A MUTATED CDC14A WILD-TYPE
  CLUS_1              0               79
  CLUS_2             13              113
  CLUS_3              1               26
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC14A MUTATED        0      8      2      1
  CDC14A WILD-TYPE     71     68     32     62
D77V2, multiclass
        clus
vv       CDC14A MUTATED CDC14A WILD-TYPE
  CLUS_1              0               71
  CLUS_2              8               68
  CLUS_3              2               32
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC14A MUTATED        1      2      6      0      3
  CDC14A WILD-TYPE     15     60     45     65     52
D77V3, multiclass
        clus
vv       CDC14A MUTATED CDC14A WILD-TYPE
  CLUS_1              1               15
  CLUS_2              2               60
  CLUS_3              6               45
  CLUS_4              0               65
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC14A MUTATED        4      7      1      0
  CDC14A WILD-TYPE     94     37     49     57
D77V4, multiclass
        clus
vv       CDC14A MUTATED CDC14A WILD-TYPE
  CLUS_1              4               94
  CLUS_2              7               37
  CLUS_3              1               49
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC14A MUTATED        7      1      1      5      0
  CDC14A WILD-TYPE     55     58     39     32     59
D77V5, multiclass
        clus
vv       CDC14A MUTATED CDC14A WILD-TYPE
  CLUS_1              7               55
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              5               32
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDC14A MUTATED        3      0     11
  CDC14A WILD-TYPE    103     54     86
D77V6, multiclass
        clus
vv       CDC14A MUTATED CDC14A WILD-TYPE
  CLUS_1              3              103
  CLUS_2              0               54
  CLUS_3             11               86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDC14A MUTATED       15      0      0
  CDC14A WILD-TYPE    108     95     71
D77V7, multiclass
        clus
vv       CDC14A MUTATED CDC14A WILD-TYPE
  CLUS_1             15              108
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDC14A MUTATED       15      0      0
  CDC14A WILD-TYPE    142     63     69
D77V8, multiclass
        clus
vv       CDC14A MUTATED CDC14A WILD-TYPE
  CLUS_1             15              142
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDC14A MUTATED        2      0      4      4      0      0
  CDC14A WILD-TYPE     31     19     55     35     16     45
D77V9, multiclass
        clus
vv       CDC14A MUTATED CDC14A WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               19
  CLUS_3              4               55
  CLUS_4              4               35
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDC14A MUTATED        4      0      3      2      1      0
  CDC14A WILD-TYPE     43     39     32     30     22     35
D77V10, multiclass
        clus
vv       CDC14A MUTATED CDC14A WILD-TYPE
  CLUS_1              4               43
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              2               30
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = BCORL1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCORL1 MUTATED        1     17      0      0      2
  BCORL1 WILD-TYPE     78    109     27     43     10
D78V1, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              1               78
  CLUS_2             17              109
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              2               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCORL1 MUTATED        0     11      3      3
  BCORL1 WILD-TYPE     71     65     31     60
D78V2, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              0               71
  CLUS_2             11               65
  CLUS_3              3               31
  CLUS_4              3               60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCORL1 MUTATED        0      7      3      0      7
  BCORL1 WILD-TYPE     16     55     48     65     48
D78V3, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              7               55
  CLUS_3              3               48
  CLUS_4              0               65
  CLUS_5              7               48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCORL1 MUTATED        1      9      6      1
  BCORL1 WILD-TYPE     97     35     44     56
D78V4, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              9               35
  CLUS_3              6               44
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCORL1 MUTATED       11      0      1      6      0
  BCORL1 WILD-TYPE     51     59     39     31     59
D78V5, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1             11               51
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              6               31
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCORL1 MUTATED        3      1     14
  BCORL1 WILD-TYPE    103     53     83
D78V6, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              1               53
  CLUS_3             14               83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCORL1 MUTATED       18      1      1
  BCORL1 WILD-TYPE    105     94     70
D78V7, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1             18              105
  CLUS_2              1               94
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCORL1 MUTATED       19      1      0
  BCORL1 WILD-TYPE    138     62     69
D78V8, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1             19              138
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCORL1 MUTATED        1      2      7      3      0      0
  BCORL1 WILD-TYPE     32     17     52     36     16     45
D78V9, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               17
  CLUS_3              7               52
  CLUS_4              3               36
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCORL1 MUTATED        5      0      5      0      3      0
  BCORL1 WILD-TYPE     42     39     30     32     20     35
D78V10, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              5               42
  CLUS_2              0               39
  CLUS_3              5               30
  CLUS_4              0               32
  CLUS_5              3               20
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = PRRG3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRRG3 MUTATED        0      8      0      0      0
  PRRG3 WILD-TYPE     79    118     27     43     12
D79V1, multiclass
        clus
vv       PRRG3 MUTATED PRRG3 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             8             118
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRRG3 MUTATED        0      1      2      3
  PRRG3 WILD-TYPE     71     75     32     60
D79V2, multiclass
        clus
vv       PRRG3 MUTATED PRRG3 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             1              75
  CLUS_3             2              32
  CLUS_4             3              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRRG3 MUTATED        1      3      2      0      1
  PRRG3 WILD-TYPE     15     59     49     65     54
D79V3, multiclass
        clus
vv       PRRG3 MUTATED PRRG3 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3              59
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRRG3 MUTATED        2      4      1      0
  PRRG3 WILD-TYPE     96     40     49     57
D79V4, multiclass
        clus
vv       PRRG3 MUTATED PRRG3 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             4              40
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRRG3 MUTATED        4      0      1      1      0
  PRRG3 WILD-TYPE     58     59     39     36     59
D79V5, multiclass
        clus
vv       PRRG3 MUTATED PRRG3 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRRG3 MUTATED        3      0      3
  PRRG3 WILD-TYPE    103     54     94
D79V6, multiclass
        clus
vv       PRRG3 MUTATED PRRG3 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRRG3 MUTATED        8      0      0
  PRRG3 WILD-TYPE    115     95     71
D79V7, multiclass
        clus
vv       PRRG3 MUTATED PRRG3 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRRG3 MUTATED        7      1      0
  PRRG3 WILD-TYPE    150     62     69
D79V8, multiclass
        clus
vv       PRRG3 MUTATED PRRG3 WILD-TYPE
  CLUS_1             7             150
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRRG3 MUTATED        0      0      4      1      0      0
  PRRG3 WILD-TYPE     33     19     55     38     16     45
D79V9, multiclass
        clus
vv       PRRG3 MUTATED PRRG3 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              19
  CLUS_3             4              55
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRRG3 MUTATED        1      0      3      0      1      0
  PRRG3 WILD-TYPE     46     39     32     32     22     35
D79V10, multiclass
        clus
vv       PRRG3 MUTATED PRRG3 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              39
  CLUS_3             3              32
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = OPTN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OPTN MUTATED        0      7      1      1      0
  OPTN WILD-TYPE     79    119     26     42     12
D80V1, multiclass
        clus
vv       OPTN MUTATED OPTN WILD-TYPE
  CLUS_1            0             79
  CLUS_2            7            119
  CLUS_3            1             26
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OPTN MUTATED        0      4      0      2
  OPTN WILD-TYPE     71     72     34     61
D80V2, multiclass
        clus
vv       OPTN MUTATED OPTN WILD-TYPE
  CLUS_1            0             71
  CLUS_2            4             72
  CLUS_3            0             34
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OPTN MUTATED        1      5      2      0      1
  OPTN WILD-TYPE     15     57     49     65     54
D80V3, multiclass
        clus
vv       OPTN MUTATED OPTN WILD-TYPE
  CLUS_1            1             15
  CLUS_2            5             57
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OPTN MUTATED        2      4      3      0
  OPTN WILD-TYPE     96     40     47     57
D80V4, multiclass
        clus
vv       OPTN MUTATED OPTN WILD-TYPE
  CLUS_1            2             96
  CLUS_2            4             40
  CLUS_3            3             47
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OPTN MUTATED        3      0      2      4      0
  OPTN WILD-TYPE     59     59     38     33     59
D80V5, multiclass
        clus
vv       OPTN MUTATED OPTN WILD-TYPE
  CLUS_1            3             59
  CLUS_2            0             59
  CLUS_3            2             38
  CLUS_4            4             33
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OPTN MUTATED        3      1      5
  OPTN WILD-TYPE    103     53     92
D80V6, multiclass
        clus
vv       OPTN MUTATED OPTN WILD-TYPE
  CLUS_1            3            103
  CLUS_2            1             53
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OPTN MUTATED        7      2      0
  OPTN WILD-TYPE    116     93     71
D80V7, multiclass
        clus
vv       OPTN MUTATED OPTN WILD-TYPE
  CLUS_1            7            116
  CLUS_2            2             93
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OPTN MUTATED        7      1      1
  OPTN WILD-TYPE    150     62     68
D80V8, multiclass
        clus
vv       OPTN MUTATED OPTN WILD-TYPE
  CLUS_1            7            150
  CLUS_2            1             62
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OPTN MUTATED        0      0      3      2      0      0
  OPTN WILD-TYPE     33     19     56     37     16     45
D80V9, multiclass
        clus
vv       OPTN MUTATED OPTN WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             19
  CLUS_3            3             56
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OPTN MUTATED        1      0      2      0      1      1
  OPTN WILD-TYPE     46     39     33     32     22     34
D80V10, multiclass
        clus
vv       OPTN MUTATED OPTN WILD-TYPE
  CLUS_1            1             46
  CLUS_2            0             39
  CLUS_3            2             33
  CLUS_4            0             32
  CLUS_5            1             22
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = RBM43 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM43 MUTATED        2      6      0      1      0
  RBM43 WILD-TYPE     77    120     27     42     12
D81V1, multiclass
        clus
vv       RBM43 MUTATED RBM43 WILD-TYPE
  CLUS_1             2              77
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM43 MUTATED        2      1      2      2
  RBM43 WILD-TYPE     69     75     32     61
D81V2, multiclass
        clus
vv       RBM43 MUTATED RBM43 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              75
  CLUS_3             2              32
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM43 MUTATED        1      4      1      1      2
  RBM43 WILD-TYPE     15     58     50     64     53
D81V3, multiclass
        clus
vv       RBM43 MUTATED RBM43 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             4              58
  CLUS_3             1              50
  CLUS_4             1              64
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM43 MUTATED        2      2      3      2
  RBM43 WILD-TYPE     96     42     47     55
D81V4, multiclass
        clus
vv       RBM43 MUTATED RBM43 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             2              42
  CLUS_3             3              47
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM43 MUTATED        4      1      0      1      2
  RBM43 WILD-TYPE     58     58     40     36     57
D81V5, multiclass
        clus
vv       RBM43 MUTATED RBM43 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM43 MUTATED        7      0      1
  RBM43 WILD-TYPE     99     54     96
D81V6, multiclass
        clus
vv       RBM43 MUTATED RBM43 WILD-TYPE
  CLUS_1             7              99
  CLUS_2             0              54
  CLUS_3             1              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM43 MUTATED        7      0      2
  RBM43 WILD-TYPE    116     95     69
D81V7, multiclass
        clus
vv       RBM43 MUTATED RBM43 WILD-TYPE
  CLUS_1             7             116
  CLUS_2             0              95
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM43 MUTATED        6      1      2
  RBM43 WILD-TYPE    151     62     67
D81V8, multiclass
        clus
vv       RBM43 MUTATED RBM43 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             1              62
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RBM43 MUTATED        1      0      3      1      1      0
  RBM43 WILD-TYPE     32     19     56     38     15     45
D81V9, multiclass
        clus
vv       RBM43 MUTATED RBM43 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             3              56
  CLUS_4             1              38
  CLUS_5             1              15
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RBM43 MUTATED        1      0      2      0      2      1
  RBM43 WILD-TYPE     46     39     33     32     21     34
D81V10, multiclass
        clus
vv       RBM43 MUTATED RBM43 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             2              21
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = ZC3H18 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H18 MUTATED        3     12      1      0      1
  ZC3H18 WILD-TYPE     76    114     26     43     11
D82V1, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              3               76
  CLUS_2             12              114
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H18 MUTATED        4      9      2      0
  ZC3H18 WILD-TYPE     67     67     32     63
D82V2, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              9               67
  CLUS_3              2               32
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H18 MUTATED        0      7      2      0      4
  ZC3H18 WILD-TYPE     16     55     49     65     51
D82V3, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              7               55
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              4               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H18 MUTATED        2      5      5      1
  ZC3H18 WILD-TYPE     96     39     45     56
D82V4, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              5               39
  CLUS_3              5               45
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H18 MUTATED        7      0      3      5      1
  ZC3H18 WILD-TYPE     55     59     37     32     58
D82V5, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              7               55
  CLUS_2              0               59
  CLUS_3              3               37
  CLUS_4              5               32
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZC3H18 MUTATED        4      0     12
  ZC3H18 WILD-TYPE    102     54     85
D82V6, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              4              102
  CLUS_2              0               54
  CLUS_3             12               85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZC3H18 MUTATED       14      2      2
  ZC3H18 WILD-TYPE    109     93     69
D82V7, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1             14              109
  CLUS_2              2               93
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZC3H18 MUTATED       14      1      3
  ZC3H18 WILD-TYPE    143     62     66
D82V8, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1             14              143
  CLUS_2              1               62
  CLUS_3              3               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZC3H18 MUTATED        4      3      4      2      0      0
  ZC3H18 WILD-TYPE     29     16     55     37     16     45
D82V9, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              4               29
  CLUS_2              3               16
  CLUS_3              4               55
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZC3H18 MUTATED        7      0      2      1      2      1
  ZC3H18 WILD-TYPE     40     39     33     31     21     34
D82V10, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              7               40
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              1               31
  CLUS_5              2               21
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(83) Variable = CTSC MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSC MUTATED        0     10      0      0      0
  CTSC WILD-TYPE     79    116     27     43     12
D83V1, multiclass
        clus
vv       CTSC MUTATED CTSC WILD-TYPE
  CLUS_1            0             79
  CLUS_2           10            116
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSC MUTATED        0      5      1      0
  CTSC WILD-TYPE     71     71     33     63
D83V2, multiclass
        clus
vv       CTSC MUTATED CTSC WILD-TYPE
  CLUS_1            0             71
  CLUS_2            5             71
  CLUS_3            1             33
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSC MUTATED        0      1      2      1      3
  CTSC WILD-TYPE     16     61     49     64     52
D83V3, multiclass
        clus
vv       CTSC MUTATED CTSC WILD-TYPE
  CLUS_1            0             16
  CLUS_2            1             61
  CLUS_3            2             49
  CLUS_4            1             64
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSC MUTATED        1      4      1      1
  CTSC WILD-TYPE     97     40     49     56
D83V4, multiclass
        clus
vv       CTSC MUTATED CTSC WILD-TYPE
  CLUS_1            1             97
  CLUS_2            4             40
  CLUS_3            1             49
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSC MUTATED        6      2      0      1      0
  CTSC WILD-TYPE     56     57     40     36     59
D83V5, multiclass
        clus
vv       CTSC MUTATED CTSC WILD-TYPE
  CLUS_1            6             56
  CLUS_2            2             57
  CLUS_3            0             40
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSC MUTATED        1      2      6
  CTSC WILD-TYPE    105     52     91
D83V6, multiclass
        clus
vv       CTSC MUTATED CTSC WILD-TYPE
  CLUS_1            1            105
  CLUS_2            2             52
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSC MUTATED        8      2      0
  CTSC WILD-TYPE    115     93     71
D83V7, multiclass
        clus
vv       CTSC MUTATED CTSC WILD-TYPE
  CLUS_1            8            115
  CLUS_2            2             93
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSC MUTATED        8      2      0
  CTSC WILD-TYPE    149     61     69
D83V8, multiclass
        clus
vv       CTSC MUTATED CTSC WILD-TYPE
  CLUS_1            8            149
  CLUS_2            2             61
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTSC MUTATED        1      1      0      3      0      1
  CTSC WILD-TYPE     32     18     59     36     16     44
D83V9, multiclass
        clus
vv       CTSC MUTATED CTSC WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            0             59
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTSC MUTATED        2      1      0      1      2      0
  CTSC WILD-TYPE     45     38     35     31     21     35
D83V10, multiclass
        clus
vv       CTSC MUTATED CTSC WILD-TYPE
  CLUS_1            2             45
  CLUS_2            1             38
  CLUS_3            0             35
  CLUS_4            1             31
  CLUS_5            2             21
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(84) Variable = RHOQ MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOQ MUTATED        0      4      0      1      0
  RHOQ WILD-TYPE     79    122     27     42     12
D84V1, multiclass
        clus
vv       RHOQ MUTATED RHOQ WILD-TYPE
  CLUS_1            0             79
  CLUS_2            4            122
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOQ MUTATED        0      3      0      0
  RHOQ WILD-TYPE     71     73     34     63
D84V2, multiclass
        clus
vv       RHOQ MUTATED RHOQ WILD-TYPE
  CLUS_1            0             71
  CLUS_2            3             73
  CLUS_3            0             34
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOQ MUTATED        0      0      0      1      2
  RHOQ WILD-TYPE     16     62     51     64     53
D84V3, multiclass
        clus
vv       RHOQ MUTATED RHOQ WILD-TYPE
  CLUS_1            0             16
  CLUS_2            0             62
  CLUS_3            0             51
  CLUS_4            1             64
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOQ MUTATED        1      1      0      1
  RHOQ WILD-TYPE     97     43     50     56
D84V4, multiclass
        clus
vv       RHOQ MUTATED RHOQ WILD-TYPE
  CLUS_1            1             97
  CLUS_2            1             43
  CLUS_3            0             50
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOQ MUTATED        2      1      1      1      0
  RHOQ WILD-TYPE     60     58     39     36     59
D84V5, multiclass
        clus
vv       RHOQ MUTATED RHOQ WILD-TYPE
  CLUS_1            2             60
  CLUS_2            1             58
  CLUS_3            1             39
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOQ MUTATED        1      0      4
  RHOQ WILD-TYPE    105     54     93
D84V6, multiclass
        clus
vv       RHOQ MUTATED RHOQ WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            4             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOQ MUTATED        4      0      1
  RHOQ WILD-TYPE    119     95     70
D84V7, multiclass
        clus
vv       RHOQ MUTATED RHOQ WILD-TYPE
  CLUS_1            4            119
  CLUS_2            0             95
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOQ MUTATED        4      0      1
  RHOQ WILD-TYPE    153     63     68
D84V8, multiclass
        clus
vv       RHOQ MUTATED RHOQ WILD-TYPE
  CLUS_1            4            153
  CLUS_2            0             63
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RHOQ MUTATED        0      1      0      2      0      0
  RHOQ WILD-TYPE     33     18     59     37     16     45
D84V9, multiclass
        clus
vv       RHOQ MUTATED RHOQ WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             18
  CLUS_3            0             59
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RHOQ MUTATED        3      0      0      0      0      0
  RHOQ WILD-TYPE     44     39     35     32     23     35
D84V10, multiclass
        clus
vv       RHOQ MUTATED RHOQ WILD-TYPE
  CLUS_1            3             44
  CLUS_2            0             39
  CLUS_3            0             35
  CLUS_4            0             32
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(85) Variable = RALGAPB MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RALGAPB MUTATED        3     11      2      0      2
  RALGAPB WILD-TYPE     76    115     25     43     10
D85V1, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               3                76
  CLUS_2              11               115
  CLUS_3               2                25
  CLUS_4               0                43
  CLUS_5               2                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RALGAPB MUTATED        3      8      2      1
  RALGAPB WILD-TYPE     68     68     32     62
D85V2, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               3                68
  CLUS_2               8                68
  CLUS_3               2                32
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RALGAPB MUTATED        2      8      4      1      1
  RALGAPB WILD-TYPE     14     54     47     64     54
D85V3, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               2                14
  CLUS_2               8                54
  CLUS_3               4                47
  CLUS_4               1                64
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RALGAPB MUTATED        2      9      4      1
  RALGAPB WILD-TYPE     96     35     46     56
D85V4, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               2                96
  CLUS_2               9                35
  CLUS_3               4                46
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RALGAPB MUTATED        6      2      3      1      2
  RALGAPB WILD-TYPE     56     57     37     36     57
D85V5, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               6                56
  CLUS_2               2                57
  CLUS_3               3                37
  CLUS_4               1                36
  CLUS_5               2                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RALGAPB MUTATED        3      2      9
  RALGAPB WILD-TYPE    103     52     88
D85V6, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               3               103
  CLUS_2               2                52
  CLUS_3               9                88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RALGAPB MUTATED       11      3      4
  RALGAPB WILD-TYPE    112     92     67
D85V7, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1              11               112
  CLUS_2               3                92
  CLUS_3               4                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RALGAPB MUTATED       13      3      2
  RALGAPB WILD-TYPE    144     60     67
D85V8, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1              13               144
  CLUS_2               3                60
  CLUS_3               2                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RALGAPB MUTATED        4      1      3      1      0      2
  RALGAPB WILD-TYPE     29     18     56     38     16     43
D85V9, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               4                29
  CLUS_2               1                18
  CLUS_3               3                56
  CLUS_4               1                38
  CLUS_5               0                16
  CLUS_6               2                43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RALGAPB MUTATED        4      2      2      2      0      1
  RALGAPB WILD-TYPE     43     37     33     30     23     34
D85V10, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               4                43
  CLUS_2               2                37
  CLUS_3               2                33
  CLUS_4               2                30
  CLUS_5               0                23
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(86) Variable = CR2 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR2 MUTATED        4     13      0      1      2
  CR2 WILD-TYPE     75    113     27     42     10
D86V1, multiclass
        clus
vv       CR2 MUTATED CR2 WILD-TYPE
  CLUS_1           4            75
  CLUS_2          13           113
  CLUS_3           0            27
  CLUS_4           1            42
  CLUS_5           2            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CR2 MUTATED        3      8      5      2
  CR2 WILD-TYPE     68     68     29     61
D86V2, multiclass
        clus
vv       CR2 MUTATED CR2 WILD-TYPE
  CLUS_1           3            68
  CLUS_2           8            68
  CLUS_3           5            29
  CLUS_4           2            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR2 MUTATED        2      6      3      0      4
  CR2 WILD-TYPE     14     56     48     65     51
D86V3, multiclass
        clus
vv       CR2 MUTATED CR2 WILD-TYPE
  CLUS_1           2            14
  CLUS_2           6            56
  CLUS_3           3            48
  CLUS_4           0            65
  CLUS_5           4            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CR2 MUTATED        5      6      4      0
  CR2 WILD-TYPE     93     38     46     57
D86V4, multiclass
        clus
vv       CR2 MUTATED CR2 WILD-TYPE
  CLUS_1           5            93
  CLUS_2           6            38
  CLUS_3           4            46
  CLUS_4           0            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR2 MUTATED       12      0      3      2      3
  CR2 WILD-TYPE     50     59     37     35     56
D86V5, multiclass
        clus
vv       CR2 MUTATED CR2 WILD-TYPE
  CLUS_1          12            50
  CLUS_2           0            59
  CLUS_3           3            37
  CLUS_4           2            35
  CLUS_5           3            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CR2 MUTATED        6      0     14
  CR2 WILD-TYPE    100     54     83
D86V6, multiclass
        clus
vv       CR2 MUTATED CR2 WILD-TYPE
  CLUS_1           6           100
  CLUS_2           0            54
  CLUS_3          14            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CR2 MUTATED       16      0      4
  CR2 WILD-TYPE    107     95     67
D86V7, multiclass
        clus
vv       CR2 MUTATED CR2 WILD-TYPE
  CLUS_1          16           107
  CLUS_2           0            95
  CLUS_3           4            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CR2 MUTATED       16      1      3
  CR2 WILD-TYPE    141     62     66
D86V8, multiclass
        clus
vv       CR2 MUTATED CR2 WILD-TYPE
  CLUS_1          16           141
  CLUS_2           1            62
  CLUS_3           3            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CR2 MUTATED        4      2      3      4      1      0
  CR2 WILD-TYPE     29     17     56     35     15     45
D86V9, multiclass
        clus
vv       CR2 MUTATED CR2 WILD-TYPE
  CLUS_1           4            29
  CLUS_2           2            17
  CLUS_3           3            56
  CLUS_4           4            35
  CLUS_5           1            15
  CLUS_6           0            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CR2 MUTATED        6      0      3      2      2      1
  CR2 WILD-TYPE     41     39     32     30     21     34
D86V10, multiclass
        clus
vv       CR2 MUTATED CR2 WILD-TYPE
  CLUS_1           6            41
  CLUS_2           0            39
  CLUS_3           3            32
  CLUS_4           2            30
  CLUS_5           2            21
  CLUS_6           1            34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(87) Variable = MSH6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MSH6 MUTATED        0     11      3      4      1
  MSH6 WILD-TYPE     79    115     24     39     11
D87V1, multiclass
        clus
vv       MSH6 MUTATED MSH6 WILD-TYPE
  CLUS_1            0             79
  CLUS_2           11            115
  CLUS_3            3             24
  CLUS_4            4             39
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH6 MUTATED        2     10      2      1
  MSH6 WILD-TYPE     69     66     32     62
D87V2, multiclass
        clus
vv       MSH6 MUTATED MSH6 WILD-TYPE
  CLUS_1            2             69
  CLUS_2           10             66
  CLUS_3            2             32
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MSH6 MUTATED        1      7      5      2      4
  MSH6 WILD-TYPE     15     55     46     63     51
D87V3, multiclass
        clus
vv       MSH6 MUTATED MSH6 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            7             55
  CLUS_3            5             46
  CLUS_4            2             63
  CLUS_5            4             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH6 MUTATED        2      8      6      3
  MSH6 WILD-TYPE     96     36     44     54
D87V4, multiclass
        clus
vv       MSH6 MUTATED MSH6 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            8             36
  CLUS_3            6             44
  CLUS_4            3             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MSH6 MUTATED        6      3      2      6      0
  MSH6 WILD-TYPE     56     56     38     31     59
D87V5, multiclass
        clus
vv       MSH6 MUTATED MSH6 WILD-TYPE
  CLUS_1            6             56
  CLUS_2            3             56
  CLUS_3            2             38
  CLUS_4            6             31
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH6 MUTATED        5      0     12
  MSH6 WILD-TYPE    101     54     85
D87V6, multiclass
        clus
vv       MSH6 MUTATED MSH6 WILD-TYPE
  CLUS_1            5            101
  CLUS_2            0             54
  CLUS_3           12             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH6 MUTATED       12      5      2
  MSH6 WILD-TYPE    111     90     69
D87V7, multiclass
        clus
vv       MSH6 MUTATED MSH6 WILD-TYPE
  CLUS_1           12            111
  CLUS_2            5             90
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH6 MUTATED       16      2      1
  MSH6 WILD-TYPE    141     61     68
D87V8, multiclass
        clus
vv       MSH6 MUTATED MSH6 WILD-TYPE
  CLUS_1           16            141
  CLUS_2            2             61
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MSH6 MUTATED        1      3      3      4      0      2
  MSH6 WILD-TYPE     32     16     56     35     16     43
D87V9, multiclass
        clus
vv       MSH6 MUTATED MSH6 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            3             16
  CLUS_3            3             56
  CLUS_4            4             35
  CLUS_5            0             16
  CLUS_6            2             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MSH6 MUTATED        5      2      3      1      2      0
  MSH6 WILD-TYPE     42     37     32     31     21     35
D87V10, multiclass
        clus
vv       MSH6 MUTATED MSH6 WILD-TYPE
  CLUS_1            5             42
  CLUS_2            2             37
  CLUS_3            3             32
  CLUS_4            1             31
  CLUS_5            2             21
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(88) Variable = ZFHX4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFHX4 MUTATED        6     36      1      4      5
  ZFHX4 WILD-TYPE     73     90     26     39      7
D88V1, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1             6              73
  CLUS_2            36              90
  CLUS_3             1              26
  CLUS_4             4              39
  CLUS_5             5               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFHX4 MUTATED        6     22      8      5
  ZFHX4 WILD-TYPE     65     54     26     58
D88V2, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1             6              65
  CLUS_2            22              54
  CLUS_3             8              26
  CLUS_4             5              58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFHX4 MUTATED        2     17     11      6      9
  ZFHX4 WILD-TYPE     14     45     40     59     46
D88V3, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1             2              14
  CLUS_2            17              45
  CLUS_3            11              40
  CLUS_4             6              59
  CLUS_5             9              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFHX4 MUTATED       15     16     10      4
  ZFHX4 WILD-TYPE     83     28     40     53
D88V4, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1            15              83
  CLUS_2            16              28
  CLUS_3            10              40
  CLUS_4             4              53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFHX4 MUTATED       27      4      5      7      5
  ZFHX4 WILD-TYPE     35     55     35     30     54
D88V5, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1            27              35
  CLUS_2             4              55
  CLUS_3             5              35
  CLUS_4             7              30
  CLUS_5             5              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFHX4 MUTATED       17      3     28
  ZFHX4 WILD-TYPE     89     51     69
D88V6, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1            17              89
  CLUS_2             3              51
  CLUS_3            28              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFHX4 MUTATED       37      9      7
  ZFHX4 WILD-TYPE     86     86     64
D88V7, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1            37              86
  CLUS_2             9              86
  CLUS_3             7              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFHX4 MUTATED       41      5      7
  ZFHX4 WILD-TYPE    116     58     62
D88V8, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1            41             116
  CLUS_2             5              58
  CLUS_3             7              62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZFHX4 MUTATED        5      3     15     10      3      1
  ZFHX4 WILD-TYPE     28     16     44     29     13     44
D88V9, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1             5              28
  CLUS_2             3              16
  CLUS_3            15              44
  CLUS_4            10              29
  CLUS_5             3              13
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZFHX4 MUTATED       16      0      8      4      6      3
  ZFHX4 WILD-TYPE     31     39     27     28     17     32
D88V10, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1            16              31
  CLUS_2             0              39
  CLUS_3             8              27
  CLUS_4             4              28
  CLUS_5             6              17
  CLUS_6             3              32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(89) Variable = SLC10A6 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC10A6 MUTATED        0      6      1      0      0
  SLC10A6 WILD-TYPE     79    120     26     43     12
D89V1, multiclass
        clus
vv       SLC10A6 MUTATED SLC10A6 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               6               120
  CLUS_3               1                26
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC10A6 MUTATED        0      5      0      1
  SLC10A6 WILD-TYPE     71     71     34     62
D89V2, multiclass
        clus
vv       SLC10A6 MUTATED SLC10A6 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               5                71
  CLUS_3               0                34
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC10A6 MUTATED        1      2      2      0      2
  SLC10A6 WILD-TYPE     15     60     49     65     53
D89V3, multiclass
        clus
vv       SLC10A6 MUTATED SLC10A6 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               2                60
  CLUS_3               2                49
  CLUS_4               0                65
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC10A6 MUTATED        2      4      1      0
  SLC10A6 WILD-TYPE     96     40     49     57
D89V4, multiclass
        clus
vv       SLC10A6 MUTATED SLC10A6 WILD-TYPE
  CLUS_1               2                96
  CLUS_2               4                40
  CLUS_3               1                49
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC10A6 MUTATED        6      0      1      1      0
  SLC10A6 WILD-TYPE     56     59     39     36     59
D89V5, multiclass
        clus
vv       SLC10A6 MUTATED SLC10A6 WILD-TYPE
  CLUS_1               6                56
  CLUS_2               0                59
  CLUS_3               1                39
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC10A6 MUTATED        2      0      6
  SLC10A6 WILD-TYPE    104     54     91
D89V6, multiclass
        clus
vv       SLC10A6 MUTATED SLC10A6 WILD-TYPE
  CLUS_1               2               104
  CLUS_2               0                54
  CLUS_3               6                91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC10A6 MUTATED        7      0      1
  SLC10A6 WILD-TYPE    116     95     70
D89V7, multiclass
        clus
vv       SLC10A6 MUTATED SLC10A6 WILD-TYPE
  CLUS_1               7               116
  CLUS_2               0                95
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC10A6 MUTATED        8      0      0
  SLC10A6 WILD-TYPE    149     63     69
D89V8, multiclass
        clus
vv       SLC10A6 MUTATED SLC10A6 WILD-TYPE
  CLUS_1               8               149
  CLUS_2               0                63
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC10A6 MUTATED        3      1      1      1      0      0
  SLC10A6 WILD-TYPE     30     18     58     38     16     45
D89V9, multiclass
        clus
vv       SLC10A6 MUTATED SLC10A6 WILD-TYPE
  CLUS_1               3                30
  CLUS_2               1                18
  CLUS_3               1                58
  CLUS_4               1                38
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC10A6 MUTATED        4      0      1      1      0      0
  SLC10A6 WILD-TYPE     43     39     34     31     23     35
D89V10, multiclass
        clus
vv       SLC10A6 MUTATED SLC10A6 WILD-TYPE
  CLUS_1               4                43
  CLUS_2               0                39
  CLUS_3               1                34
  CLUS_4               1                31
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(90) Variable = LEMD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LEMD1 MUTATED        0      2      1      0      0
  LEMD1 WILD-TYPE     79    124     26     43     12
D90V1, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             2             124
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEMD1 MUTATED        0      4      0      0
  LEMD1 WILD-TYPE     71     72     34     63
D90V2, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             4              72
  CLUS_3             0              34
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LEMD1 MUTATED        0      1      1      0      1
  LEMD1 WILD-TYPE     16     61     50     65     54
D90V3, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              61
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEMD1 MUTATED        0      3      0      0
  LEMD1 WILD-TYPE     98     41     50     57
D90V4, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             3              41
  CLUS_3             0              50
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LEMD1 MUTATED        2      0      0      1      0
  LEMD1 WILD-TYPE     60     59     40     36     59
D90V5, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LEMD1 MUTATED        0      0      3
  LEMD1 WILD-TYPE    106     54     94
D90V6, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LEMD1 MUTATED        4      0      0
  LEMD1 WILD-TYPE    119     95     71
D90V7, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             4             119
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LEMD1 MUTATED        4      0      0
  LEMD1 WILD-TYPE    153     63     69
D90V8, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             4             153
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LEMD1 MUTATED        1      1      2      0      0      0
  LEMD1 WILD-TYPE     32     18     57     39     16     45
D90V9, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             2              57
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LEMD1 MUTATED        3      0      1      0      0      0
  LEMD1 WILD-TYPE     44     39     34     32     23     35
D90V10, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(91) Variable = KIF13A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF13A MUTATED        2     12      2      2      1
  KIF13A WILD-TYPE     77    114     25     41     11
D91V1, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              2               77
  CLUS_2             12              114
  CLUS_3              2               25
  CLUS_4              2               41
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF13A MUTATED        2      7      4      1
  KIF13A WILD-TYPE     69     69     30     62
D91V2, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              2               69
  CLUS_2              7               69
  CLUS_3              4               30
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF13A MUTATED        1      7      5      1      5
  KIF13A WILD-TYPE     15     55     46     64     50
D91V3, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              1               15
  CLUS_2              7               55
  CLUS_3              5               46
  CLUS_4              1               64
  CLUS_5              5               50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF13A MUTATED        4     10      2      3
  KIF13A WILD-TYPE     94     34     48     54
D91V4, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              4               94
  CLUS_2             10               34
  CLUS_3              2               48
  CLUS_4              3               54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF13A MUTATED       12      1      0      4      2
  KIF13A WILD-TYPE     50     58     40     33     57
D91V5, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1             12               50
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              4               33
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF13A MUTATED        7      1     11
  KIF13A WILD-TYPE     99     53     86
D91V6, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              7               99
  CLUS_2              1               53
  CLUS_3             11               86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF13A MUTATED       16      3      1
  KIF13A WILD-TYPE    107     92     70
D91V7, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1             16              107
  CLUS_2              3               92
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF13A MUTATED       16      2      2
  KIF13A WILD-TYPE    141     61     67
D91V8, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1             16              141
  CLUS_2              2               61
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIF13A MUTATED        3      2      4      1      0      2
  KIF13A WILD-TYPE     30     17     55     38     16     43
D91V9, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              3               30
  CLUS_2              2               17
  CLUS_3              4               55
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              2               43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIF13A MUTATED        4      1      3      0      2      2
  KIF13A WILD-TYPE     43     38     32     32     21     33
D91V10, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              4               43
  CLUS_2              1               38
  CLUS_3              3               32
  CLUS_4              0               32
  CLUS_5              2               21
  CLUS_6              2               33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(92) Variable = DDX17 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX17 MUTATED        0     10      0      1      0
  DDX17 WILD-TYPE     79    116     27     42     12
D92V1, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             0              79
  CLUS_2            10             116
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX17 MUTATED        0      6      1      1
  DDX17 WILD-TYPE     71     70     33     62
D92V2, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             6              70
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX17 MUTATED        0      7      2      0      2
  DDX17 WILD-TYPE     16     55     49     65     53
D92V3, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             7              55
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX17 MUTATED        3      5      3      0
  DDX17 WILD-TYPE     95     39     47     57
D92V4, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             5              39
  CLUS_3             3              47
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX17 MUTATED        4      0      2      3      0
  DDX17 WILD-TYPE     58     59     38     34     59
D92V5, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             2              38
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX17 MUTATED        2      1      6
  DDX17 WILD-TYPE    104     53     91
D92V6, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              53
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX17 MUTATED        8      2      1
  DDX17 WILD-TYPE    115     93     70
D92V7, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             2              93
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX17 MUTATED       10      0      1
  DDX17 WILD-TYPE    147     63     68
D92V8, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1            10             147
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DDX17 MUTATED        1      0      2      4      0      0
  DDX17 WILD-TYPE     32     19     57     35     16     45
D92V9, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             2              57
  CLUS_4             4              35
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DDX17 MUTATED        3      0      2      0      1      1
  DDX17 WILD-TYPE     44     39     33     32     22     34
D92V10, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(93) Variable = RTN2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RTN2 MUTATED        0      9      1      0      1
  RTN2 WILD-TYPE     79    117     26     43     11
D93V1, multiclass
        clus
vv       RTN2 MUTATED RTN2 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            9            117
  CLUS_3            1             26
  CLUS_4            0             43
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTN2 MUTATED        0      6      1      1
  RTN2 WILD-TYPE     71     70     33     62
D93V2, multiclass
        clus
vv       RTN2 MUTATED RTN2 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            6             70
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RTN2 MUTATED        1      4      3      0      3
  RTN2 WILD-TYPE     15     58     48     65     52
D93V3, multiclass
        clus
vv       RTN2 MUTATED RTN2 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            4             58
  CLUS_3            3             48
  CLUS_4            0             65
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTN2 MUTATED        2      5      3      1
  RTN2 WILD-TYPE     96     39     47     56
D93V4, multiclass
        clus
vv       RTN2 MUTATED RTN2 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            5             39
  CLUS_3            3             47
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RTN2 MUTATED        4      2      0      4      0
  RTN2 WILD-TYPE     58     57     40     33     59
D93V5, multiclass
        clus
vv       RTN2 MUTATED RTN2 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            2             57
  CLUS_3            0             40
  CLUS_4            4             33
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTN2 MUTATED        2      2      6
  RTN2 WILD-TYPE    104     52     91
D93V6, multiclass
        clus
vv       RTN2 MUTATED RTN2 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            2             52
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTN2 MUTATED        9      1      1
  RTN2 WILD-TYPE    114     94     70
D93V7, multiclass
        clus
vv       RTN2 MUTATED RTN2 WILD-TYPE
  CLUS_1            9            114
  CLUS_2            1             94
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTN2 MUTATED       10      0      1
  RTN2 WILD-TYPE    147     63     68
D93V8, multiclass
        clus
vv       RTN2 MUTATED RTN2 WILD-TYPE
  CLUS_1           10            147
  CLUS_2            0             63
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RTN2 MUTATED        0      2      4      1      0      0
  RTN2 WILD-TYPE     33     17     55     38     16     45
D93V9, multiclass
        clus
vv       RTN2 MUTATED RTN2 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            2             17
  CLUS_3            4             55
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RTN2 MUTATED        3      0      2      1      1      0
  RTN2 WILD-TYPE     44     39     33     31     22     35
D93V10, multiclass
        clus
vv       RTN2 MUTATED RTN2 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            0             39
  CLUS_3            2             33
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(94) Variable = PAX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAX2 MUTATED        0      7      1      1      0
  PAX2 WILD-TYPE     79    119     26     42     12
D94V1, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            7            119
  CLUS_3            1             26
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAX2 MUTATED        0      4      3      1
  PAX2 WILD-TYPE     71     72     31     62
D94V2, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            4             72
  CLUS_3            3             31
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAX2 MUTATED        1      2      5      0      1
  PAX2 WILD-TYPE     15     60     46     65     54
D94V3, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            2             60
  CLUS_3            5             46
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAX2 MUTATED        1      7      1      0
  PAX2 WILD-TYPE     97     37     49     57
D94V4, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            1             97
  CLUS_2            7             37
  CLUS_3            1             49
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAX2 MUTATED        6      0      0      2      0
  PAX2 WILD-TYPE     56     59     40     35     59
D94V5, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            6             56
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            2             35
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAX2 MUTATED        2      0      6
  PAX2 WILD-TYPE    104     54     91
D94V6, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            0             54
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAX2 MUTATED        8      1      0
  PAX2 WILD-TYPE    115     94     71
D94V7, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            8            115
  CLUS_2            1             94
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAX2 MUTATED        8      1      0
  PAX2 WILD-TYPE    149     62     69
D94V8, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            8            149
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PAX2 MUTATED        0      0      4      1      0      1
  PAX2 WILD-TYPE     33     19     55     38     16     44
D94V9, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             19
  CLUS_3            4             55
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PAX2 MUTATED        0      1      4      0      1      0
  PAX2 WILD-TYPE     47     38     31     32     22     35
D94V10, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            0             47
  CLUS_2            1             38
  CLUS_3            4             31
  CLUS_4            0             32
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(95) Variable = KIAA0240 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0240 MUTATED        1      9      1      0      1
  KIAA0240 WILD-TYPE     78    117     26     43     11
D95V1, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                1                 78
  CLUS_2                9                117
  CLUS_3                1                 26
  CLUS_4                0                 43
  CLUS_5                1                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0240 MUTATED        1      3      2      3
  KIAA0240 WILD-TYPE     70     73     32     60
D95V2, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                1                 70
  CLUS_2                3                 73
  CLUS_3                2                 32
  CLUS_4                3                 60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0240 MUTATED        1      4      2      0      2
  KIAA0240 WILD-TYPE     15     58     49     65     53
D95V3, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                4                 58
  CLUS_3                2                 49
  CLUS_4                0                 65
  CLUS_5                2                 53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0240 MUTATED        2      4      3      0
  KIAA0240 WILD-TYPE     96     40     47     57
D95V4, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                2                 96
  CLUS_2                4                 40
  CLUS_3                3                 47
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0240 MUTATED        5      0      3      2      1
  KIAA0240 WILD-TYPE     57     59     37     35     58
D95V5, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                5                 57
  CLUS_2                0                 59
  CLUS_3                3                 37
  CLUS_4                2                 35
  CLUS_5                1                 58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0240 MUTATED        3      1      7
  KIAA0240 WILD-TYPE    103     53     90
D95V6, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                3                103
  CLUS_2                1                 53
  CLUS_3                7                 90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0240 MUTATED        8      3      1
  KIAA0240 WILD-TYPE    115     92     70
D95V7, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                8                115
  CLUS_2                3                 92
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0240 MUTATED        8      2      2
  KIAA0240 WILD-TYPE    149     61     67
D95V8, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                8                149
  CLUS_2                2                 61
  CLUS_3                2                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0240 MUTATED        1      0      2      4      0      1
  KIAA0240 WILD-TYPE     32     19     57     35     16     44
D95V9, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                0                 19
  CLUS_3                2                 57
  CLUS_4                4                 35
  CLUS_5                0                 16
  CLUS_6                1                 44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0240 MUTATED        2      1      2      0      2      1
  KIAA0240 WILD-TYPE     45     38     33     32     21     34
D95V10, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                2                 45
  CLUS_2                1                 38
  CLUS_3                2                 33
  CLUS_4                0                 32
  CLUS_5                2                 21
  CLUS_6                1                 34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(96) Variable = INPPL1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INPPL1 MUTATED        0     16      1      3      2
  INPPL1 WILD-TYPE     79    110     26     40     10
D96V1, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              0               79
  CLUS_2             16              110
  CLUS_3              1               26
  CLUS_4              3               40
  CLUS_5              2               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INPPL1 MUTATED        0      8      3      1
  INPPL1 WILD-TYPE     71     68     31     62
D96V2, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              8               68
  CLUS_3              3               31
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INPPL1 MUTATED        1     10      3      2      4
  INPPL1 WILD-TYPE     15     52     48     63     51
D96V3, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              1               15
  CLUS_2             10               52
  CLUS_3              3               48
  CLUS_4              2               63
  CLUS_5              4               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INPPL1 MUTATED        5     10      4      1
  INPPL1 WILD-TYPE     93     34     46     56
D96V4, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              5               93
  CLUS_2             10               34
  CLUS_3              4               46
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INPPL1 MUTATED       13      2      2      4      0
  INPPL1 WILD-TYPE     49     57     38     33     59
D96V5, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1             13               49
  CLUS_2              2               57
  CLUS_3              2               38
  CLUS_4              4               33
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  INPPL1 MUTATED        6      2     13
  INPPL1 WILD-TYPE    100     52     84
D96V6, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              6              100
  CLUS_2              2               52
  CLUS_3             13               84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  INPPL1 MUTATED       19      2      1
  INPPL1 WILD-TYPE    104     93     70
D96V7, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1             19              104
  CLUS_2              2               93
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  INPPL1 MUTATED       20      1      1
  INPPL1 WILD-TYPE    137     62     68
D96V8, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1             20              137
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  INPPL1 MUTATED        1      1      4      5      0      0
  INPPL1 WILD-TYPE     32     18     55     34     16     45
D96V9, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              4               55
  CLUS_4              5               34
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  INPPL1 MUTATED        4      0      4      1      2      0
  INPPL1 WILD-TYPE     43     39     31     31     21     35
D96V10, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              4               43
  CLUS_2              0               39
  CLUS_3              4               31
  CLUS_4              1               31
  CLUS_5              2               21
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(97) Variable = TFE3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TFE3 MUTATED        0      7      0      1      0
  TFE3 WILD-TYPE     79    119     27     42     12
D97V1, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            7            119
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFE3 MUTATED        0      5      2      0
  TFE3 WILD-TYPE     71     71     32     63
D97V2, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            5             71
  CLUS_3            2             32
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TFE3 MUTATED        0      1      0      1      3
  TFE3 WILD-TYPE     16     61     51     64     52
D97V3, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            1             61
  CLUS_3            0             51
  CLUS_4            1             64
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFE3 MUTATED        0      3      1      1
  TFE3 WILD-TYPE     98     41     49     56
D97V4, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            0             98
  CLUS_2            3             41
  CLUS_3            1             49
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TFE3 MUTATED        4      0      0      2      1
  TFE3 WILD-TYPE     58     59     40     35     58
D97V5, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            2             35
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TFE3 MUTATED        1      0      6
  TFE3 WILD-TYPE    105     54     91
D97V6, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TFE3 MUTATED        7      0      1
  TFE3 WILD-TYPE    116     95     70
D97V7, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            7            116
  CLUS_2            0             95
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TFE3 MUTATED        8      0      0
  TFE3 WILD-TYPE    149     63     69
D97V8, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            8            149
  CLUS_2            0             63
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TFE3 MUTATED        2      1      2      2      0      0
  TFE3 WILD-TYPE     31     18     57     37     16     45
D97V9, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             18
  CLUS_3            2             57
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TFE3 MUTATED        4      0      2      0      1      0
  TFE3 WILD-TYPE     43     39     33     32     22     35
D97V10, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            0             39
  CLUS_3            2             33
  CLUS_4            0             32
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(98) Variable = BTBD7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD7 MUTATED        0     14      1      2      0
  BTBD7 WILD-TYPE     79    112     26     41     12
D98V1, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             0              79
  CLUS_2            14             112
  CLUS_3             1              26
  CLUS_4             2              41
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD7 MUTATED        1     11      1      1
  BTBD7 WILD-TYPE     70     65     33     62
D98V2, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             1              70
  CLUS_2            11              65
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD7 MUTATED        1      4      5      0      4
  BTBD7 WILD-TYPE     15     58     46     65     51
D98V3, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             4              58
  CLUS_3             5              46
  CLUS_4             0              65
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD7 MUTATED        4      7      3      0
  BTBD7 WILD-TYPE     94     37     47     57
D98V4, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             4              94
  CLUS_2             7              37
  CLUS_3             3              47
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD7 MUTATED        7      1      3      4      0
  BTBD7 WILD-TYPE     55     58     37     33     59
D98V5, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             7              55
  CLUS_2             1              58
  CLUS_3             3              37
  CLUS_4             4              33
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTBD7 MUTATED        1      1     13
  BTBD7 WILD-TYPE    105     53     84
D98V6, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             1              53
  CLUS_3            13              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTBD7 MUTATED       15      1      1
  BTBD7 WILD-TYPE    108     94     70
D98V7, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1            15             108
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTBD7 MUTATED       16      1      0
  BTBD7 WILD-TYPE    141     62     69
D98V8, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1            16             141
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BTBD7 MUTATED        0      3      3      5      0      1
  BTBD7 WILD-TYPE     33     16     56     34     16     44
D98V9, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             3              16
  CLUS_3             3              56
  CLUS_4             5              34
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BTBD7 MUTATED        5      1      2      2      2      0
  BTBD7 WILD-TYPE     42     38     33     30     21     35
D98V10, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             5              42
  CLUS_2             1              38
  CLUS_3             2              33
  CLUS_4             2              30
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(99) Variable = PLOD3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLOD3 MUTATED        2     10      0      0      1
  PLOD3 WILD-TYPE     77    116     27     43     11
D99V1, multiclass
        clus
vv       PLOD3 MUTATED PLOD3 WILD-TYPE
  CLUS_1             2              77
  CLUS_2            10             116
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLOD3 MUTATED        2      8      1      1
  PLOD3 WILD-TYPE     69     68     33     62
D99V2, multiclass
        clus
vv       PLOD3 MUTATED PLOD3 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             8              68
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLOD3 MUTATED        0      4      6      1      1
  PLOD3 WILD-TYPE     16     58     45     64     54
D99V3, multiclass
        clus
vv       PLOD3 MUTATED PLOD3 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             4              58
  CLUS_3             6              45
  CLUS_4             1              64
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLOD3 MUTATED        3      4      3      2
  PLOD3 WILD-TYPE     95     40     47     55
D99V4, multiclass
        clus
vv       PLOD3 MUTATED PLOD3 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             4              40
  CLUS_3             3              47
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLOD3 MUTATED        8      1      1      2      2
  PLOD3 WILD-TYPE     54     58     39     35     57
D99V5, multiclass
        clus
vv       PLOD3 MUTATED PLOD3 WILD-TYPE
  CLUS_1             8              54
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             2              35
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLOD3 MUTATED        4      2      8
  PLOD3 WILD-TYPE    102     52     89
D99V6, multiclass
        clus
vv       PLOD3 MUTATED PLOD3 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             2              52
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLOD3 MUTATED        9      2      3
  PLOD3 WILD-TYPE    114     93     68
D99V7, multiclass
        clus
vv       PLOD3 MUTATED PLOD3 WILD-TYPE
  CLUS_1             9             114
  CLUS_2             2              93
  CLUS_3             3              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLOD3 MUTATED       10      2      2
  PLOD3 WILD-TYPE    147     61     67
D99V8, multiclass
        clus
vv       PLOD3 MUTATED PLOD3 WILD-TYPE
  CLUS_1            10             147
  CLUS_2             2              61
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLOD3 MUTATED        3      2      3      2      0      1
  PLOD3 WILD-TYPE     30     17     56     37     16     44
D99V9, multiclass
        clus
vv       PLOD3 MUTATED PLOD3 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             2              17
  CLUS_3             3              56
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLOD3 MUTATED        5      1      2      1      2      0
  PLOD3 WILD-TYPE     42     38     33     31     21     35
D99V10, multiclass
        clus
vv       PLOD3 MUTATED PLOD3 WILD-TYPE
  CLUS_1             5              42
  CLUS_2             1              38
  CLUS_3             2              33
  CLUS_4             1              31
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(100) Variable = NOX5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOX5 MUTATED        1     10      0      1      2
  NOX5 WILD-TYPE     78    116     27     42     10
D100V1, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            1             78
  CLUS_2           10            116
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            2             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOX5 MUTATED        1      7      1      2
  NOX5 WILD-TYPE     70     69     33     61
D100V2, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            7             69
  CLUS_3            1             33
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOX5 MUTATED        1      5      2      2      3
  NOX5 WILD-TYPE     15     57     49     63     52
D100V3, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            5             57
  CLUS_3            2             49
  CLUS_4            2             63
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOX5 MUTATED        4      5      2      2
  NOX5 WILD-TYPE     94     39     48     55
D100V4, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            4             94
  CLUS_2            5             39
  CLUS_3            2             48
  CLUS_4            2             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOX5 MUTATED        6      2      1      2      1
  NOX5 WILD-TYPE     56     57     39     35     58
D100V5, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            6             56
  CLUS_2            2             57
  CLUS_3            1             39
  CLUS_4            2             35
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOX5 MUTATED        2      2      8
  NOX5 WILD-TYPE    104     52     89
D100V6, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            2             52
  CLUS_3            8             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOX5 MUTATED       12      1      1
  NOX5 WILD-TYPE    111     94     70
D100V7, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1           12            111
  CLUS_2            1             94
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOX5 MUTATED       12      1      1
  NOX5 WILD-TYPE    145     62     68
D100V8, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1           12            145
  CLUS_2            1             62
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NOX5 MUTATED        2      3      3      1      0      1
  NOX5 WILD-TYPE     31     16     56     38     16     44
D100V9, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            3             16
  CLUS_3            3             56
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NOX5 MUTATED        5      1      2      2      0      0
  NOX5 WILD-TYPE     42     38     33     30     23     35
D100V10, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            5             42
  CLUS_2            1             38
  CLUS_3            2             33
  CLUS_4            2             30
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(101) Variable = SNAPC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNAPC1 MUTATED        0      4      1      1      1
  SNAPC1 WILD-TYPE     79    122     26     42     11
D101V1, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              4              122
  CLUS_3              1               26
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAPC1 MUTATED        0      5      2      0
  SNAPC1 WILD-TYPE     71     71     32     63
D101V2, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              5               71
  CLUS_3              2               32
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNAPC1 MUTATED        1      2      1      0      0
  SNAPC1 WILD-TYPE     15     60     50     65     55
D101V3, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              2               60
  CLUS_3              1               50
  CLUS_4              0               65
  CLUS_5              0               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAPC1 MUTATED        1      2      0      1
  SNAPC1 WILD-TYPE     97     42     50     56
D101V4, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              2               42
  CLUS_3              0               50
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNAPC1 MUTATED        4      1      2      0      0
  SNAPC1 WILD-TYPE     58     58     38     37     59
D101V5, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              1               58
  CLUS_3              2               38
  CLUS_4              0               37
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SNAPC1 MUTATED        1      1      5
  SNAPC1 WILD-TYPE    105     53     92
D101V6, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              1               53
  CLUS_3              5               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SNAPC1 MUTATED        6      0      1
  SNAPC1 WILD-TYPE    117     95     70
D101V7, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              6              117
  CLUS_2              0               95
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SNAPC1 MUTATED        6      0      1
  SNAPC1 WILD-TYPE    151     63     68
D101V8, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              6              151
  CLUS_2              0               63
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SNAPC1 MUTATED        0      1      2      3      0      0
  SNAPC1 WILD-TYPE     33     18     57     36     16     45
D101V9, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              3               36
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SNAPC1 MUTATED        2      0      2      1      1      0
  SNAPC1 WILD-TYPE     45     39     33     31     22     35
D101V10, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(102) Variable = FGGY MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGGY MUTATED        3      6      0      0      0
  FGGY WILD-TYPE     76    120     27     43     12
D102V1, multiclass
        clus
vv       FGGY MUTATED FGGY WILD-TYPE
  CLUS_1            3             76
  CLUS_2            6            120
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGGY MUTATED        1      3      1      0
  FGGY WILD-TYPE     70     73     33     63
D102V2, multiclass
        clus
vv       FGGY MUTATED FGGY WILD-TYPE
  CLUS_1            1             70
  CLUS_2            3             73
  CLUS_3            1             33
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGGY MUTATED        1      3      3      0      1
  FGGY WILD-TYPE     15     59     48     65     54
D102V3, multiclass
        clus
vv       FGGY MUTATED FGGY WILD-TYPE
  CLUS_1            1             15
  CLUS_2            3             59
  CLUS_3            3             48
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGGY MUTATED        3      4      0      1
  FGGY WILD-TYPE     95     40     50     56
D102V4, multiclass
        clus
vv       FGGY MUTATED FGGY WILD-TYPE
  CLUS_1            3             95
  CLUS_2            4             40
  CLUS_3            0             50
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGGY MUTATED        4      0      2      2      1
  FGGY WILD-TYPE     58     59     38     35     58
D102V5, multiclass
        clus
vv       FGGY MUTATED FGGY WILD-TYPE
  CLUS_1            4             58
  CLUS_2            0             59
  CLUS_3            2             38
  CLUS_4            2             35
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FGGY MUTATED        3      0      6
  FGGY WILD-TYPE    103     54     91
D102V6, multiclass
        clus
vv       FGGY MUTATED FGGY WILD-TYPE
  CLUS_1            3            103
  CLUS_2            0             54
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FGGY MUTATED        6      0      3
  FGGY WILD-TYPE    117     95     68
D102V7, multiclass
        clus
vv       FGGY MUTATED FGGY WILD-TYPE
  CLUS_1            6            117
  CLUS_2            0             95
  CLUS_3            3             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FGGY MUTATED        7      0      2
  FGGY WILD-TYPE    150     63     67
D102V8, multiclass
        clus
vv       FGGY MUTATED FGGY WILD-TYPE
  CLUS_1            7            150
  CLUS_2            0             63
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FGGY MUTATED        1      0      3      2      0      0
  FGGY WILD-TYPE     32     19     56     37     16     45
D102V9, multiclass
        clus
vv       FGGY MUTATED FGGY WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             19
  CLUS_3            3             56
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FGGY MUTATED        2      0      1      1      1      1
  FGGY WILD-TYPE     45     39     34     31     22     34
D102V10, multiclass
        clus
vv       FGGY MUTATED FGGY WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(103) Variable = ADAM30 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAM30 MUTATED        2      9      1      2      0
  ADAM30 WILD-TYPE     77    117     26     41     12
D103V1, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              2               77
  CLUS_2              9              117
  CLUS_3              1               26
  CLUS_4              2               41
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM30 MUTATED        2      4      2      1
  ADAM30 WILD-TYPE     69     72     32     62
D103V2, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              4               72
  CLUS_3              2               32
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAM30 MUTATED        0      7      4      2      1
  ADAM30 WILD-TYPE     16     55     47     63     54
D103V3, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              7               55
  CLUS_3              4               47
  CLUS_4              2               63
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM30 MUTATED        4      5      3      2
  ADAM30 WILD-TYPE     94     39     47     55
D103V4, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              4               94
  CLUS_2              5               39
  CLUS_3              3               47
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAM30 MUTATED        4      2      2      3      1
  ADAM30 WILD-TYPE     58     57     38     34     58
D103V5, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              2               57
  CLUS_3              2               38
  CLUS_4              3               34
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM30 MUTATED        5      0      7
  ADAM30 WILD-TYPE    101     54     90
D103V6, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              5              101
  CLUS_2              0               54
  CLUS_3              7               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM30 MUTATED       11      1      2
  ADAM30 WILD-TYPE    112     94     69
D103V7, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1             11              112
  CLUS_2              1               94
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM30 MUTATED       10      0      4
  ADAM30 WILD-TYPE    147     63     65
D103V8, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1             10              147
  CLUS_2              0               63
  CLUS_3              4               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ADAM30 MUTATED        2      0      2      2      1      0
  ADAM30 WILD-TYPE     31     19     57     37     15     45
D103V9, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               19
  CLUS_3              2               57
  CLUS_4              2               37
  CLUS_5              1               15
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ADAM30 MUTATED        2      0      1      0      1      3
  ADAM30 WILD-TYPE     45     39     34     32     22     32
D103V10, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              0               32
  CLUS_5              1               22
  CLUS_6              3               32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(104) Variable = EIF5B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF5B MUTATED        0     15      1      2      0
  EIF5B WILD-TYPE     79    111     26     41     12
D104V1, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             0              79
  CLUS_2            15             111
  CLUS_3             1              26
  CLUS_4             2              41
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF5B MUTATED        1      9      3      1
  EIF5B WILD-TYPE     70     67     31     62
D104V2, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             1              70
  CLUS_2             9              67
  CLUS_3             3              31
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF5B MUTATED        2      7      3      0      5
  EIF5B WILD-TYPE     14     55     48     65     50
D104V3, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             2              14
  CLUS_2             7              55
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF5B MUTATED        2     11      4      0
  EIF5B WILD-TYPE     96     33     46     57
D104V4, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             2              96
  CLUS_2            11              33
  CLUS_3             4              46
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF5B MUTATED        9      1      3      2      0
  EIF5B WILD-TYPE     53     58     37     35     59
D104V5, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             9              53
  CLUS_2             1              58
  CLUS_3             3              37
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EIF5B MUTATED        4      0     11
  EIF5B WILD-TYPE    102     54     86
D104V6, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             4             102
  CLUS_2             0              54
  CLUS_3            11              86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EIF5B MUTATED       16      1      1
  EIF5B WILD-TYPE    107     94     70
D104V7, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1            16             107
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EIF5B MUTATED       17      1      0
  EIF5B WILD-TYPE    140     62     69
D104V8, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1            17             140
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EIF5B MUTATED        3      1      6      3      0      0
  EIF5B WILD-TYPE     30     18     53     36     16     45
D104V9, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             3              30
  CLUS_2             1              18
  CLUS_3             6              53
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EIF5B MUTATED        5      0      4      2      2      0
  EIF5B WILD-TYPE     42     39     31     30     21     35
D104V10, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             5              42
  CLUS_2             0              39
  CLUS_3             4              31
  CLUS_4             2              30
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(105) Variable = PYGO2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PYGO2 MUTATED        0      6      0      1      0
  PYGO2 WILD-TYPE     79    120     27     42     12
D105V1, multiclass
        clus
vv       PYGO2 MUTATED PYGO2 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PYGO2 MUTATED        0      6      1      0
  PYGO2 WILD-TYPE     71     70     33     63
D105V2, multiclass
        clus
vv       PYGO2 MUTATED PYGO2 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             6              70
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PYGO2 MUTATED        0      2      0      0      1
  PYGO2 WILD-TYPE     16     60     51     65     54
D105V3, multiclass
        clus
vv       PYGO2 MUTATED PYGO2 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             0              51
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PYGO2 MUTATED        0      2      1      0
  PYGO2 WILD-TYPE     98     42     49     57
D105V4, multiclass
        clus
vv       PYGO2 MUTATED PYGO2 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             2              42
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PYGO2 MUTATED        5      0      0      2      0
  PYGO2 WILD-TYPE     57     59     40     35     59
D105V5, multiclass
        clus
vv       PYGO2 MUTATED PYGO2 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PYGO2 MUTATED        0      0      7
  PYGO2 WILD-TYPE    106     54     90
D105V6, multiclass
        clus
vv       PYGO2 MUTATED PYGO2 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              54
  CLUS_3             7              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PYGO2 MUTATED        7      0      0
  PYGO2 WILD-TYPE    116     95     71
D105V7, multiclass
        clus
vv       PYGO2 MUTATED PYGO2 WILD-TYPE
  CLUS_1             7             116
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PYGO2 MUTATED        7      0      0
  PYGO2 WILD-TYPE    150     63     69
D105V8, multiclass
        clus
vv       PYGO2 MUTATED PYGO2 WILD-TYPE
  CLUS_1             7             150
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PYGO2 MUTATED        0      3      1      2      0      0
  PYGO2 WILD-TYPE     33     16     58     37     16     45
D105V9, multiclass
        clus
vv       PYGO2 MUTATED PYGO2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             3              16
  CLUS_3             1              58
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PYGO2 MUTATED        5      0      1      0      0      0
  PYGO2 WILD-TYPE     42     39     34     32     23     35
D105V10, multiclass
        clus
vv       PYGO2 MUTATED PYGO2 WILD-TYPE
  CLUS_1             5              42
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(106) Variable = PRPF40B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRPF40B MUTATED        1     12      1      0      0
  PRPF40B WILD-TYPE     78    114     26     43     12
D106V1, multiclass
        clus
vv       PRPF40B MUTATED PRPF40B WILD-TYPE
  CLUS_1               1                78
  CLUS_2              12               114
  CLUS_3               1                26
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPF40B MUTATED        1      7      2      1
  PRPF40B WILD-TYPE     70     69     32     62
D106V2, multiclass
        clus
vv       PRPF40B MUTATED PRPF40B WILD-TYPE
  CLUS_1               1                70
  CLUS_2               7                69
  CLUS_3               2                32
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRPF40B MUTATED        0      6      4      1      2
  PRPF40B WILD-TYPE     16     56     47     64     53
D106V3, multiclass
        clus
vv       PRPF40B MUTATED PRPF40B WILD-TYPE
  CLUS_1               0                16
  CLUS_2               6                56
  CLUS_3               4                47
  CLUS_4               1                64
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPF40B MUTATED        2      6      4      1
  PRPF40B WILD-TYPE     96     38     46     56
D106V4, multiclass
        clus
vv       PRPF40B MUTATED PRPF40B WILD-TYPE
  CLUS_1               2                96
  CLUS_2               6                38
  CLUS_3               4                46
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRPF40B MUTATED        7      2      1      2      0
  PRPF40B WILD-TYPE     55     57     39     35     59
D106V5, multiclass
        clus
vv       PRPF40B MUTATED PRPF40B WILD-TYPE
  CLUS_1               7                55
  CLUS_2               2                57
  CLUS_3               1                39
  CLUS_4               2                35
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PRPF40B MUTATED        2      2      8
  PRPF40B WILD-TYPE    104     52     89
D106V6, multiclass
        clus
vv       PRPF40B MUTATED PRPF40B WILD-TYPE
  CLUS_1               2               104
  CLUS_2               2                52
  CLUS_3               8                89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PRPF40B MUTATED       11      3      0
  PRPF40B WILD-TYPE    112     92     71
D106V7, multiclass
        clus
vv       PRPF40B MUTATED PRPF40B WILD-TYPE
  CLUS_1              11               112
  CLUS_2               3                92
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PRPF40B MUTATED        9      3      2
  PRPF40B WILD-TYPE    148     60     67
D106V8, multiclass
        clus
vv       PRPF40B MUTATED PRPF40B WILD-TYPE
  CLUS_1               9               148
  CLUS_2               3                60
  CLUS_3               2                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRPF40B MUTATED        1      1      6      0      0      2
  PRPF40B WILD-TYPE     32     18     53     39     16     43
D106V9, multiclass
        clus
vv       PRPF40B MUTATED PRPF40B WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                18
  CLUS_3               6                53
  CLUS_4               0                39
  CLUS_5               0                16
  CLUS_6               2                43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRPF40B MUTATED        4      2      3      1      0      0
  PRPF40B WILD-TYPE     43     37     32     31     23     35
D106V10, multiclass
        clus
vv       PRPF40B MUTATED PRPF40B WILD-TYPE
  CLUS_1               4                43
  CLUS_2               2                37
  CLUS_3               3                32
  CLUS_4               1                31
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(107) Variable = C6ORF89 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6ORF89 MUTATED        1      6      1      0      0
  C6ORF89 WILD-TYPE     78    120     26     43     12
D107V1, multiclass
        clus
vv       C6ORF89 MUTATED C6ORF89 WILD-TYPE
  CLUS_1               1                78
  CLUS_2               6               120
  CLUS_3               1                26
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF89 MUTATED        1      7      1      0
  C6ORF89 WILD-TYPE     70     69     33     63
D107V2, multiclass
        clus
vv       C6ORF89 MUTATED C6ORF89 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               7                69
  CLUS_3               1                33
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6ORF89 MUTATED        1      3      2      0      1
  C6ORF89 WILD-TYPE     15     59     49     65     54
D107V3, multiclass
        clus
vv       C6ORF89 MUTATED C6ORF89 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               3                59
  CLUS_3               2                49
  CLUS_4               0                65
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF89 MUTATED        1      4      2      0
  C6ORF89 WILD-TYPE     97     40     48     57
D107V4, multiclass
        clus
vv       C6ORF89 MUTATED C6ORF89 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               4                40
  CLUS_3               2                48
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6ORF89 MUTATED        5      0      0      3      1
  C6ORF89 WILD-TYPE     57     59     40     34     58
D107V5, multiclass
        clus
vv       C6ORF89 MUTATED C6ORF89 WILD-TYPE
  CLUS_1               5                57
  CLUS_2               0                59
  CLUS_3               0                40
  CLUS_4               3                34
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C6ORF89 MUTATED        1      0      8
  C6ORF89 WILD-TYPE    105     54     89
D107V6, multiclass
        clus
vv       C6ORF89 MUTATED C6ORF89 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               0                54
  CLUS_3               8                89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C6ORF89 MUTATED        7      1      1
  C6ORF89 WILD-TYPE    116     94     70
D107V7, multiclass
        clus
vv       C6ORF89 MUTATED C6ORF89 WILD-TYPE
  CLUS_1               7               116
  CLUS_2               1                94
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C6ORF89 MUTATED        9      0      0
  C6ORF89 WILD-TYPE    148     63     69
D107V8, multiclass
        clus
vv       C6ORF89 MUTATED C6ORF89 WILD-TYPE
  CLUS_1               9               148
  CLUS_2               0                63
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C6ORF89 MUTATED        3      2      1      3      0      0
  C6ORF89 WILD-TYPE     30     17     58     36     16     45
D107V9, multiclass
        clus
vv       C6ORF89 MUTATED C6ORF89 WILD-TYPE
  CLUS_1               3                30
  CLUS_2               2                17
  CLUS_3               1                58
  CLUS_4               3                36
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C6ORF89 MUTATED        6      0      0      0      3      0
  C6ORF89 WILD-TYPE     41     39     35     32     20     35
D107V10, multiclass
        clus
vv       C6ORF89 MUTATED C6ORF89 WILD-TYPE
  CLUS_1               6                41
  CLUS_2               0                39
  CLUS_3               0                35
  CLUS_4               0                32
  CLUS_5               3                20
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(108) Variable = ABCC4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC4 MUTATED        1     14      1      0      1
  ABCC4 WILD-TYPE     78    112     26     43     11
D108V1, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             1              78
  CLUS_2            14             112
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCC4 MUTATED        0      6      2      4
  ABCC4 WILD-TYPE     71     70     32     59
D108V2, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             6              70
  CLUS_3             2              32
  CLUS_4             4              59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC4 MUTATED        2      5      3      1      5
  ABCC4 WILD-TYPE     14     57     48     64     50
D108V3, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             5              57
  CLUS_3             3              48
  CLUS_4             1              64
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCC4 MUTATED        6      5      4      1
  ABCC4 WILD-TYPE     92     39     46     56
D108V4, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             6              92
  CLUS_2             5              39
  CLUS_3             4              46
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC4 MUTATED        9      1      3      2      1
  ABCC4 WILD-TYPE     53     58     37     35     58
D108V5, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             9              53
  CLUS_2             1              58
  CLUS_3             3              37
  CLUS_4             2              35
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC4 MUTATED        4      0     12
  ABCC4 WILD-TYPE    102     54     85
D108V6, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             0              54
  CLUS_3            12              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC4 MUTATED       14      2      1
  ABCC4 WILD-TYPE    109     93     70
D108V7, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1            14             109
  CLUS_2             2              93
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC4 MUTATED       12      2      3
  ABCC4 WILD-TYPE    145     61     66
D108V8, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1            12             145
  CLUS_2             2              61
  CLUS_3             3              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABCC4 MUTATED        2      0      7      1      1      0
  ABCC4 WILD-TYPE     31     19     52     38     15     45
D108V9, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              19
  CLUS_3             7              52
  CLUS_4             1              38
  CLUS_5             1              15
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABCC4 MUTATED        2      0      6      2      0      1
  ABCC4 WILD-TYPE     45     39     29     30     23     34
D108V10, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             6              29
  CLUS_4             2              30
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(109) Variable = USP21 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP21 MUTATED        1      9      1      0      1
  USP21 WILD-TYPE     78    117     26     43     11
D109V1, multiclass
        clus
vv       USP21 MUTATED USP21 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             9             117
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP21 MUTATED        1      5      2      0
  USP21 WILD-TYPE     70     71     32     63
D109V2, multiclass
        clus
vv       USP21 MUTATED USP21 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             5              71
  CLUS_3             2              32
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP21 MUTATED        0      6      3      1      1
  USP21 WILD-TYPE     16     56     48     64     54
D109V3, multiclass
        clus
vv       USP21 MUTATED USP21 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             6              56
  CLUS_3             3              48
  CLUS_4             1              64
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP21 MUTATED        2      5      3      1
  USP21 WILD-TYPE     96     39     47     56
D109V4, multiclass
        clus
vv       USP21 MUTATED USP21 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             5              39
  CLUS_3             3              47
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP21 MUTATED        6      1      1      1      2
  USP21 WILD-TYPE     56     58     39     36     57
D109V5, multiclass
        clus
vv       USP21 MUTATED USP21 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP21 MUTATED        2      1      8
  USP21 WILD-TYPE    104     53     89
D109V6, multiclass
        clus
vv       USP21 MUTATED USP21 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              53
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP21 MUTATED       11      1      1
  USP21 WILD-TYPE    112     94     70
D109V7, multiclass
        clus
vv       USP21 MUTATED USP21 WILD-TYPE
  CLUS_1            11             112
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP21 MUTATED       10      1      2
  USP21 WILD-TYPE    147     62     67
D109V8, multiclass
        clus
vv       USP21 MUTATED USP21 WILD-TYPE
  CLUS_1            10             147
  CLUS_2             1              62
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  USP21 MUTATED        2      0      4      2      0      0
  USP21 WILD-TYPE     31     19     55     37     16     45
D109V9, multiclass
        clus
vv       USP21 MUTATED USP21 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              19
  CLUS_3             4              55
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  USP21 MUTATED        5      0      2      0      1      0
  USP21 WILD-TYPE     42     39     33     32     22     35
D109V10, multiclass
        clus
vv       USP21 MUTATED USP21 WILD-TYPE
  CLUS_1             5              42
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(110) Variable = SETDB2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SETDB2 MUTATED        1      7      0      1      1
  SETDB2 WILD-TYPE     78    119     27     42     11
D110V1, multiclass
        clus
vv       SETDB2 MUTATED SETDB2 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              7              119
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETDB2 MUTATED        0      4      1      0
  SETDB2 WILD-TYPE     71     72     33     63
D110V2, multiclass
        clus
vv       SETDB2 MUTATED SETDB2 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              4               72
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SETDB2 MUTATED        0      6      3      0      1
  SETDB2 WILD-TYPE     16     56     48     65     54
D110V3, multiclass
        clus
vv       SETDB2 MUTATED SETDB2 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              6               56
  CLUS_3              3               48
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETDB2 MUTATED        3      5      2      0
  SETDB2 WILD-TYPE     95     39     48     57
D110V4, multiclass
        clus
vv       SETDB2 MUTATED SETDB2 WILD-TYPE
  CLUS_1              3               95
  CLUS_2              5               39
  CLUS_3              2               48
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SETDB2 MUTATED        8      0      0      0      1
  SETDB2 WILD-TYPE     54     59     40     37     58
D110V5, multiclass
        clus
vv       SETDB2 MUTATED SETDB2 WILD-TYPE
  CLUS_1              8               54
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              0               37
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SETDB2 MUTATED        3      0      6
  SETDB2 WILD-TYPE    103     54     91
D110V6, multiclass
        clus
vv       SETDB2 MUTATED SETDB2 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              0               54
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SETDB2 MUTATED        9      1      0
  SETDB2 WILD-TYPE    114     94     71
D110V7, multiclass
        clus
vv       SETDB2 MUTATED SETDB2 WILD-TYPE
  CLUS_1              9              114
  CLUS_2              1               94
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SETDB2 MUTATED       10      0      0
  SETDB2 WILD-TYPE    147     63     69
D110V8, multiclass
        clus
vv       SETDB2 MUTATED SETDB2 WILD-TYPE
  CLUS_1             10              147
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SETDB2 MUTATED        1      0      2      2      0      0
  SETDB2 WILD-TYPE     32     19     57     37     16     45
D110V9, multiclass
        clus
vv       SETDB2 MUTATED SETDB2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               19
  CLUS_3              2               57
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SETDB2 MUTATED        2      0      2      0      1      0
  SETDB2 WILD-TYPE     45     39     33     32     22     35
D110V10, multiclass
        clus
vv       SETDB2 MUTATED SETDB2 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              0               32
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(111) Variable = TTF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TTF1 MUTATED        3      8      0      2      1
  TTF1 WILD-TYPE     76    118     27     41     11
D111V1, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            3             76
  CLUS_2            8            118
  CLUS_3            0             27
  CLUS_4            2             41
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTF1 MUTATED        1      6      2      0
  TTF1 WILD-TYPE     70     70     32     63
D111V2, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            6             70
  CLUS_3            2             32
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TTF1 MUTATED        0      7      2      1      2
  TTF1 WILD-TYPE     16     55     49     64     53
D111V3, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            7             55
  CLUS_3            2             49
  CLUS_4            1             64
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTF1 MUTATED        2      6      3      1
  TTF1 WILD-TYPE     96     38     47     56
D111V4, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            6             38
  CLUS_3            3             47
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TTF1 MUTATED        8      1      0      0      3
  TTF1 WILD-TYPE     54     58     40     37     56
D111V5, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            8             54
  CLUS_2            1             58
  CLUS_3            0             40
  CLUS_4            0             37
  CLUS_5            3             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TTF1 MUTATED        5      0      7
  TTF1 WILD-TYPE    101     54     90
D111V6, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            5            101
  CLUS_2            0             54
  CLUS_3            7             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TTF1 MUTATED       11      0      3
  TTF1 WILD-TYPE    112     95     68
D111V7, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1           11            112
  CLUS_2            0             95
  CLUS_3            3             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TTF1 MUTATED       11      0      3
  TTF1 WILD-TYPE    146     63     66
D111V8, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1           11            146
  CLUS_2            0             63
  CLUS_3            3             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TTF1 MUTATED        4      0      2      2      0      0
  TTF1 WILD-TYPE     29     19     57     37     16     45
D111V9, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            4             29
  CLUS_2            0             19
  CLUS_3            2             57
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TTF1 MUTATED        4      0      1      1      1      1
  TTF1 WILD-TYPE     43     39     34     31     22     34
D111V10, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(112) Variable = FLNB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FLNB MUTATED        0     20      1      2      1
  FLNB WILD-TYPE     79    106     26     41     11
D112V1, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            0             79
  CLUS_2           20            106
  CLUS_3            1             26
  CLUS_4            2             41
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLNB MUTATED        1     16      0      4
  FLNB WILD-TYPE     70     60     34     59
D112V2, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            1             70
  CLUS_2           16             60
  CLUS_3            0             34
  CLUS_4            4             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FLNB MUTATED        1      8      3      3      6
  FLNB WILD-TYPE     15     54     48     62     49
D112V3, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            1             15
  CLUS_2            8             54
  CLUS_3            3             48
  CLUS_4            3             62
  CLUS_5            6             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLNB MUTATED        4     10      4      3
  FLNB WILD-TYPE     94     34     46     54
D112V4, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            4             94
  CLUS_2           10             34
  CLUS_3            4             46
  CLUS_4            3             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FLNB MUTATED       11      3      1      4      1
  FLNB WILD-TYPE     51     56     39     33     58
D112V5, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1           11             51
  CLUS_2            3             56
  CLUS_3            1             39
  CLUS_4            4             33
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FLNB MUTATED        3      3     14
  FLNB WILD-TYPE    103     51     83
D112V6, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            3            103
  CLUS_2            3             51
  CLUS_3           14             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FLNB MUTATED       16      5      3
  FLNB WILD-TYPE    107     90     68
D112V7, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1           16            107
  CLUS_2            5             90
  CLUS_3            3             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FLNB MUTATED       21      2      1
  FLNB WILD-TYPE    136     61     68
D112V8, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1           21            136
  CLUS_2            2             61
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FLNB MUTATED        5      4      2      5      1      2
  FLNB WILD-TYPE     28     15     57     34     15     43
D112V9, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            5             28
  CLUS_2            4             15
  CLUS_3            2             57
  CLUS_4            5             34
  CLUS_5            1             15
  CLUS_6            2             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FLNB MUTATED       11      2      2      1      2      1
  FLNB WILD-TYPE     36     37     33     31     21     34
D112V10, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1           11             36
  CLUS_2            2             37
  CLUS_3            2             33
  CLUS_4            1             31
  CLUS_5            2             21
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(113) Variable = PMEPA1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PMEPA1 MUTATED        0      7      0      0      0
  PMEPA1 WILD-TYPE     79    119     27     43     12
D113V1, multiclass
        clus
vv       PMEPA1 MUTATED PMEPA1 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              7              119
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PMEPA1 MUTATED        0      1      2      2
  PMEPA1 WILD-TYPE     71     75     32     61
D113V2, multiclass
        clus
vv       PMEPA1 MUTATED PMEPA1 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              1               75
  CLUS_3              2               32
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PMEPA1 MUTATED        1      4      0      0      2
  PMEPA1 WILD-TYPE     15     58     51     65     53
D113V3, multiclass
        clus
vv       PMEPA1 MUTATED PMEPA1 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              4               58
  CLUS_3              0               51
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PMEPA1 MUTATED        1      2      3      1
  PMEPA1 WILD-TYPE     97     42     47     56
D113V4, multiclass
        clus
vv       PMEPA1 MUTATED PMEPA1 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              2               42
  CLUS_3              3               47
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PMEPA1 MUTATED        4      1      0      2      0
  PMEPA1 WILD-TYPE     58     58     40     35     59
D113V5, multiclass
        clus
vv       PMEPA1 MUTATED PMEPA1 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              2               35
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PMEPA1 MUTATED        3      0      4
  PMEPA1 WILD-TYPE    103     54     93
D113V6, multiclass
        clus
vv       PMEPA1 MUTATED PMEPA1 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              0               54
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PMEPA1 MUTATED        7      0      0
  PMEPA1 WILD-TYPE    116     95     71
D113V7, multiclass
        clus
vv       PMEPA1 MUTATED PMEPA1 WILD-TYPE
  CLUS_1              7              116
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PMEPA1 MUTATED        7      0      0
  PMEPA1 WILD-TYPE    150     63     69
D113V8, multiclass
        clus
vv       PMEPA1 MUTATED PMEPA1 WILD-TYPE
  CLUS_1              7              150
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PMEPA1 MUTATED        1      0      4      0      0      0
  PMEPA1 WILD-TYPE     32     19     55     39     16     45
D113V9, multiclass
        clus
vv       PMEPA1 MUTATED PMEPA1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               19
  CLUS_3              4               55
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PMEPA1 MUTATED        1      0      3      0      1      0
  PMEPA1 WILD-TYPE     46     39     32     32     22     35
D113V10, multiclass
        clus
vv       PMEPA1 MUTATED PMEPA1 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              0               32
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(114) Variable = TNFRSF9 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFRSF9 MUTATED        1      7      0      0      2
  TNFRSF9 WILD-TYPE     78    119     27     43     10
D114V1, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               1                78
  CLUS_2               7               119
  CLUS_3               0                27
  CLUS_4               0                43
  CLUS_5               2                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF9 MUTATED        1      5      0      2
  TNFRSF9 WILD-TYPE     70     71     34     61
D114V2, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               5                71
  CLUS_3               0                34
  CLUS_4               2                61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFRSF9 MUTATED        1      4      0      2      1
  TNFRSF9 WILD-TYPE     15     58     51     63     54
D114V3, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               4                58
  CLUS_3               0                51
  CLUS_4               2                63
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF9 MUTATED        1      2      3      2
  TNFRSF9 WILD-TYPE     97     42     47     55
D114V4, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               2                42
  CLUS_3               3                47
  CLUS_4               2                55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFRSF9 MUTATED        6      1      0      2      0
  TNFRSF9 WILD-TYPE     56     58     40     35     59
D114V5, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               6                56
  CLUS_2               1                58
  CLUS_3               0                40
  CLUS_4               2                35
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFRSF9 MUTATED        1      2      6
  TNFRSF9 WILD-TYPE    105     52     91
D114V6, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               2                52
  CLUS_3               6                91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFRSF9 MUTATED        6      3      1
  TNFRSF9 WILD-TYPE    117     92     70
D114V7, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               6               117
  CLUS_2               3                92
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFRSF9 MUTATED        8      2      0
  TNFRSF9 WILD-TYPE    149     61     69
D114V8, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               8               149
  CLUS_2               2                61
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNFRSF9 MUTATED        1      1      3      2      0      0
  TNFRSF9 WILD-TYPE     32     18     56     37     16     45
D114V9, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                18
  CLUS_3               3                56
  CLUS_4               2                37
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNFRSF9 MUTATED        0      0      3      2      2      0
  TNFRSF9 WILD-TYPE     47     39     32     30     21     35
D114V10, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               0                47
  CLUS_2               0                39
  CLUS_3               3                32
  CLUS_4               2                30
  CLUS_5               2                21
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(115) Variable = PGM5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGM5 MUTATED        0     18      3      1      2
  PGM5 WILD-TYPE     79    108     24     42     10
D115V1, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1            0             79
  CLUS_2           18            108
  CLUS_3            3             24
  CLUS_4            1             42
  CLUS_5            2             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGM5 MUTATED        0     16      4      1
  PGM5 WILD-TYPE     71     60     30     62
D115V2, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1            0             71
  CLUS_2           16             60
  CLUS_3            4             30
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGM5 MUTATED        0      6      5      0      8
  PGM5 WILD-TYPE     16     56     46     65     47
D115V3, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            6             56
  CLUS_3            5             46
  CLUS_4            0             65
  CLUS_5            8             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGM5 MUTATED        3     11      3      2
  PGM5 WILD-TYPE     95     33     47     55
D115V4, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1            3             95
  CLUS_2           11             33
  CLUS_3            3             47
  CLUS_4            2             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGM5 MUTATED       15      1      4      3      0
  PGM5 WILD-TYPE     47     58     36     34     59
D115V5, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1           15             47
  CLUS_2            1             58
  CLUS_3            4             36
  CLUS_4            3             34
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PGM5 MUTATED        0      2     21
  PGM5 WILD-TYPE    106     52     76
D115V6, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1            0            106
  CLUS_2            2             52
  CLUS_3           21             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PGM5 MUTATED       19      2      4
  PGM5 WILD-TYPE    104     93     67
D115V7, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1           19            104
  CLUS_2            2             93
  CLUS_3            4             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PGM5 MUTATED       23      1      1
  PGM5 WILD-TYPE    134     62     68
D115V8, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1           23            134
  CLUS_2            1             62
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PGM5 MUTATED        5      4      1      7      0      2
  PGM5 WILD-TYPE     28     15     58     32     16     43
D115V9, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1            5             28
  CLUS_2            4             15
  CLUS_3            1             58
  CLUS_4            7             32
  CLUS_5            0             16
  CLUS_6            2             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PGM5 MUTATED       10      1      1      5      2      0
  PGM5 WILD-TYPE     37     38     34     27     21     35
D115V10, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1           10             37
  CLUS_2            1             38
  CLUS_3            1             34
  CLUS_4            5             27
  CLUS_5            2             21
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(116) Variable = VPS13A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPS13A MUTATED        4     23      1      3      1
  VPS13A WILD-TYPE     75    103     26     40     11
D116V1, multiclass
        clus
vv       VPS13A MUTATED VPS13A WILD-TYPE
  CLUS_1              4               75
  CLUS_2             23              103
  CLUS_3              1               26
  CLUS_4              3               40
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS13A MUTATED        4     13      4      4
  VPS13A WILD-TYPE     67     63     30     59
D116V2, multiclass
        clus
vv       VPS13A MUTATED VPS13A WILD-TYPE
  CLUS_1              4               67
  CLUS_2             13               63
  CLUS_3              4               30
  CLUS_4              4               59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPS13A MUTATED        1     12      6      4      7
  VPS13A WILD-TYPE     15     50     45     61     48
D116V3, multiclass
        clus
vv       VPS13A MUTATED VPS13A WILD-TYPE
  CLUS_1              1               15
  CLUS_2             12               50
  CLUS_3              6               45
  CLUS_4              4               61
  CLUS_5              7               48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS13A MUTATED        4     14      7      5
  VPS13A WILD-TYPE     94     30     43     52
D116V4, multiclass
        clus
vv       VPS13A MUTATED VPS13A WILD-TYPE
  CLUS_1              4               94
  CLUS_2             14               30
  CLUS_3              7               43
  CLUS_4              5               52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPS13A MUTATED       14      3      4      4      3
  VPS13A WILD-TYPE     48     56     36     33     56
D116V5, multiclass
        clus
vv       VPS13A MUTATED VPS13A WILD-TYPE
  CLUS_1             14               48
  CLUS_2              3               56
  CLUS_3              4               36
  CLUS_4              4               33
  CLUS_5              3               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VPS13A MUTATED       10      2     16
  VPS13A WILD-TYPE     96     52     81
D116V6, multiclass
        clus
vv       VPS13A MUTATED VPS13A WILD-TYPE
  CLUS_1             10               96
  CLUS_2              2               52
  CLUS_3             16               81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VPS13A MUTATED       22      5      5
  VPS13A WILD-TYPE    101     90     66
D116V7, multiclass
        clus
vv       VPS13A MUTATED VPS13A WILD-TYPE
  CLUS_1             22              101
  CLUS_2              5               90
  CLUS_3              5               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VPS13A MUTATED       22      5      5
  VPS13A WILD-TYPE    135     58     64
D116V8, multiclass
        clus
vv       VPS13A MUTATED VPS13A WILD-TYPE
  CLUS_1             22              135
  CLUS_2              5               58
  CLUS_3              5               64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  VPS13A MUTATED        3      4     10      2      1      1
  VPS13A WILD-TYPE     30     15     49     37     15     44
D116V9, multiclass
        clus
vv       VPS13A MUTATED VPS13A WILD-TYPE
  CLUS_1              3               30
  CLUS_2              4               15
  CLUS_3             10               49
  CLUS_4              2               37
  CLUS_5              1               15
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  VPS13A MUTATED        6      0      9      3      1      2
  VPS13A WILD-TYPE     41     39     26     29     22     33
D116V10, multiclass
        clus
vv       VPS13A MUTATED VPS13A WILD-TYPE
  CLUS_1              6               41
  CLUS_2              0               39
  CLUS_3              9               26
  CLUS_4              3               29
  CLUS_5              1               22
  CLUS_6              2               33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(117) Variable = FAM151A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM151A MUTATED        0      6      2      0      1
  FAM151A WILD-TYPE     79    120     25     43     11
D117V1, multiclass
        clus
vv       FAM151A MUTATED FAM151A WILD-TYPE
  CLUS_1               0                79
  CLUS_2               6               120
  CLUS_3               2                25
  CLUS_4               0                43
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM151A MUTATED        0      5      0      1
  FAM151A WILD-TYPE     71     71     34     62
D117V2, multiclass
        clus
vv       FAM151A MUTATED FAM151A WILD-TYPE
  CLUS_1               0                71
  CLUS_2               5                71
  CLUS_3               0                34
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM151A MUTATED        1      1      1      1      4
  FAM151A WILD-TYPE     15     61     50     64     51
D117V3, multiclass
        clus
vv       FAM151A MUTATED FAM151A WILD-TYPE
  CLUS_1               1                15
  CLUS_2               1                61
  CLUS_3               1                50
  CLUS_4               1                64
  CLUS_5               4                51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM151A MUTATED        2      4      1      1
  FAM151A WILD-TYPE     96     40     49     56
D117V4, multiclass
        clus
vv       FAM151A MUTATED FAM151A WILD-TYPE
  CLUS_1               2                96
  CLUS_2               4                40
  CLUS_3               1                49
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM151A MUTATED        4      0      2      3      0
  FAM151A WILD-TYPE     58     59     38     34     59
D117V5, multiclass
        clus
vv       FAM151A MUTATED FAM151A WILD-TYPE
  CLUS_1               4                58
  CLUS_2               0                59
  CLUS_3               2                38
  CLUS_4               3                34
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM151A MUTATED        0      1      8
  FAM151A WILD-TYPE    106     53     89
D117V6, multiclass
        clus
vv       FAM151A MUTATED FAM151A WILD-TYPE
  CLUS_1               0               106
  CLUS_2               1                53
  CLUS_3               8                89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM151A MUTATED        8      0      1
  FAM151A WILD-TYPE    115     95     70
D117V7, multiclass
        clus
vv       FAM151A MUTATED FAM151A WILD-TYPE
  CLUS_1               8               115
  CLUS_2               0                95
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM151A MUTATED        7      1      1
  FAM151A WILD-TYPE    150     62     68
D117V8, multiclass
        clus
vv       FAM151A MUTATED FAM151A WILD-TYPE
  CLUS_1               7               150
  CLUS_2               1                62
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM151A MUTATED        0      1      3      1      0      0
  FAM151A WILD-TYPE     33     18     56     38     16     45
D117V9, multiclass
        clus
vv       FAM151A MUTATED FAM151A WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                18
  CLUS_3               3                56
  CLUS_4               1                38
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM151A MUTATED        3      0      2      0      0      0
  FAM151A WILD-TYPE     44     39     33     32     23     35
D117V10, multiclass
        clus
vv       FAM151A MUTATED FAM151A WILD-TYPE
  CLUS_1               3                44
  CLUS_2               0                39
  CLUS_3               2                33
  CLUS_4               0                32
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(118) Variable = RASA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASA1 MUTATED        5      9      2      0      1
  RASA1 WILD-TYPE     74    117     25     43     11
D118V1, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             5              74
  CLUS_2             9             117
  CLUS_3             2              25
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASA1 MUTATED        3      5      3      0
  RASA1 WILD-TYPE     68     71     31     63
D118V2, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             5              71
  CLUS_3             3              31
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASA1 MUTATED        2      4      3      0      7
  RASA1 WILD-TYPE     14     58     48     65     48
D118V3, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             4              58
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             7              48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASA1 MUTATED        5      8      2      1
  RASA1 WILD-TYPE     93     36     48     56
D118V4, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             5              93
  CLUS_2             8              36
  CLUS_3             2              48
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASA1 MUTATED        6      0      7      3      0
  RASA1 WILD-TYPE     56     59     33     34     59
D118V5, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             0              59
  CLUS_3             7              33
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA1 MUTATED        2      0     14
  RASA1 WILD-TYPE    104     54     83
D118V6, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3            14              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA1 MUTATED       15      2      0
  RASA1 WILD-TYPE    108     93     71
D118V7, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1            15             108
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA1 MUTATED       13      1      3
  RASA1 WILD-TYPE    144     62     66
D118V8, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1            13             144
  CLUS_2             1              62
  CLUS_3             3              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RASA1 MUTATED        1      1      5      3      0      1
  RASA1 WILD-TYPE     32     18     54     36     16     44
D118V9, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             5              54
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RASA1 MUTATED        3      1      3      3      1      0
  RASA1 WILD-TYPE     44     38     32     29     22     35
D118V10, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             3              29
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(119) Variable = ZNF48 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF48 MUTATED        1      8      1      0      0
  ZNF48 WILD-TYPE     78    118     26     43     12
D119V1, multiclass
        clus
vv       ZNF48 MUTATED ZNF48 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             8             118
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF48 MUTATED        1      3      4      0
  ZNF48 WILD-TYPE     70     73     30     63
D119V2, multiclass
        clus
vv       ZNF48 MUTATED ZNF48 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             3              73
  CLUS_3             4              30
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF48 MUTATED        0      3      4      0      2
  ZNF48 WILD-TYPE     16     59     47     65     53
D119V3, multiclass
        clus
vv       ZNF48 MUTATED ZNF48 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              59
  CLUS_3             4              47
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF48 MUTATED        1      4      2      2
  ZNF48 WILD-TYPE     97     40     48     55
D119V4, multiclass
        clus
vv       ZNF48 MUTATED ZNF48 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             4              40
  CLUS_3             2              48
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF48 MUTATED        7      0      1      0      0
  ZNF48 WILD-TYPE     55     59     39     37     59
D119V5, multiclass
        clus
vv       ZNF48 MUTATED ZNF48 WILD-TYPE
  CLUS_1             7              55
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF48 MUTATED        1      0      7
  ZNF48 WILD-TYPE    105     54     90
D119V6, multiclass
        clus
vv       ZNF48 MUTATED ZNF48 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             7              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF48 MUTATED        8      1      1
  ZNF48 WILD-TYPE    115     94     70
D119V7, multiclass
        clus
vv       ZNF48 MUTATED ZNF48 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF48 MUTATED        8      2      0
  ZNF48 WILD-TYPE    149     61     69
D119V8, multiclass
        clus
vv       ZNF48 MUTATED ZNF48 WILD-TYPE
  CLUS_1             8             149
  CLUS_2             2              61
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF48 MUTATED        1      1      3      0      0      1
  ZNF48 WILD-TYPE     32     18     56     39     16     44
D119V9, multiclass
        clus
vv       ZNF48 MUTATED ZNF48 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             3              56
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF48 MUTATED        2      1      2      0      1      0
  ZNF48 WILD-TYPE     45     38     33     32     22     35
D119V10, multiclass
        clus
vv       ZNF48 MUTATED ZNF48 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              38
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(120) Variable = GBP7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GBP7 MUTATED        0      8      1      0      0
  GBP7 WILD-TYPE     79    118     26     43     12
D120V1, multiclass
        clus
vv       GBP7 MUTATED GBP7 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            8            118
  CLUS_3            1             26
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GBP7 MUTATED        1      4      1      0
  GBP7 WILD-TYPE     70     72     33     63
D120V2, multiclass
        clus
vv       GBP7 MUTATED GBP7 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            4             72
  CLUS_3            1             33
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GBP7 MUTATED        0      3      4      0      2
  GBP7 WILD-TYPE     16     59     47     65     53
D120V3, multiclass
        clus
vv       GBP7 MUTATED GBP7 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            3             59
  CLUS_3            4             47
  CLUS_4            0             65
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GBP7 MUTATED        3      3      3      0
  GBP7 WILD-TYPE     95     41     47     57
D120V4, multiclass
        clus
vv       GBP7 MUTATED GBP7 WILD-TYPE
  CLUS_1            3             95
  CLUS_2            3             41
  CLUS_3            3             47
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GBP7 MUTATED        2      1      2      2      0
  GBP7 WILD-TYPE     60     58     38     35     59
D120V5, multiclass
        clus
vv       GBP7 MUTATED GBP7 WILD-TYPE
  CLUS_1            2             60
  CLUS_2            1             58
  CLUS_3            2             38
  CLUS_4            2             35
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GBP7 MUTATED        1      1      5
  GBP7 WILD-TYPE    105     53     92
D120V6, multiclass
        clus
vv       GBP7 MUTATED GBP7 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            1             53
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GBP7 MUTATED        5      4      0
  GBP7 WILD-TYPE    118     91     71
D120V7, multiclass
        clus
vv       GBP7 MUTATED GBP7 WILD-TYPE
  CLUS_1            5            118
  CLUS_2            4             91
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GBP7 MUTATED        5      3      1
  GBP7 WILD-TYPE    152     60     68
D120V8, multiclass
        clus
vv       GBP7 MUTATED GBP7 WILD-TYPE
  CLUS_1            5            152
  CLUS_2            3             60
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GBP7 MUTATED        0      1      2      1      0      2
  GBP7 WILD-TYPE     33     18     57     38     16     43
D120V9, multiclass
        clus
vv       GBP7 MUTATED GBP7 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             18
  CLUS_3            2             57
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            2             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GBP7 MUTATED        1      2      2      0      1      0
  GBP7 WILD-TYPE     46     37     33     32     22     35
D120V10, multiclass
        clus
vv       GBP7 MUTATED GBP7 WILD-TYPE
  CLUS_1            1             46
  CLUS_2            2             37
  CLUS_3            2             33
  CLUS_4            0             32
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(121) Variable = MAP7D1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP7D1 MUTATED        1      9      1      1      0
  MAP7D1 WILD-TYPE     78    117     26     42     12
D121V1, multiclass
        clus
vv       MAP7D1 MUTATED MAP7D1 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              9              117
  CLUS_3              1               26
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D1 MUTATED        2      5      3      1
  MAP7D1 WILD-TYPE     69     71     31     62
D121V2, multiclass
        clus
vv       MAP7D1 MUTATED MAP7D1 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              5               71
  CLUS_3              3               31
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP7D1 MUTATED        2      2      5      1      1
  MAP7D1 WILD-TYPE     14     60     46     64     54
D121V3, multiclass
        clus
vv       MAP7D1 MUTATED MAP7D1 WILD-TYPE
  CLUS_1              2               14
  CLUS_2              2               60
  CLUS_3              5               46
  CLUS_4              1               64
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D1 MUTATED        4      4      1      2
  MAP7D1 WILD-TYPE     94     40     49     55
D121V4, multiclass
        clus
vv       MAP7D1 MUTATED MAP7D1 WILD-TYPE
  CLUS_1              4               94
  CLUS_2              4               40
  CLUS_3              1               49
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP7D1 MUTATED        7      1      0      1      2
  MAP7D1 WILD-TYPE     55     58     40     36     57
D121V5, multiclass
        clus
vv       MAP7D1 MUTATED MAP7D1 WILD-TYPE
  CLUS_1              7               55
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              1               36
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP7D1 MUTATED        4      1      6
  MAP7D1 WILD-TYPE    102     53     91
D121V6, multiclass
        clus
vv       MAP7D1 MUTATED MAP7D1 WILD-TYPE
  CLUS_1              4              102
  CLUS_2              1               53
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP7D1 MUTATED        7      2      3
  MAP7D1 WILD-TYPE    116     93     68
D121V7, multiclass
        clus
vv       MAP7D1 MUTATED MAP7D1 WILD-TYPE
  CLUS_1              7              116
  CLUS_2              2               93
  CLUS_3              3               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP7D1 MUTATED        8      2      2
  MAP7D1 WILD-TYPE    149     61     67
D121V8, multiclass
        clus
vv       MAP7D1 MUTATED MAP7D1 WILD-TYPE
  CLUS_1              8              149
  CLUS_2              2               61
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAP7D1 MUTATED        2      1      4      2      0      1
  MAP7D1 WILD-TYPE     31     18     55     37     16     44
D121V9, multiclass
        clus
vv       MAP7D1 MUTATED MAP7D1 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               18
  CLUS_3              4               55
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAP7D1 MUTATED        4      1      2      0      2      1
  MAP7D1 WILD-TYPE     43     38     33     32     21     34
D121V10, multiclass
        clus
vv       MAP7D1 MUTATED MAP7D1 WILD-TYPE
  CLUS_1              4               43
  CLUS_2              1               38
  CLUS_3              2               33
  CLUS_4              0               32
  CLUS_5              2               21
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(122) Variable = SERPINI1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINI1 MUTATED        0      6      0      2      0
  SERPINI1 WILD-TYPE     79    120     27     41     12
D122V1, multiclass
        clus
vv       SERPINI1 MUTATED SERPINI1 WILD-TYPE
  CLUS_1                0                 79
  CLUS_2                6                120
  CLUS_3                0                 27
  CLUS_4                2                 41
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINI1 MUTATED        0      4      1      0
  SERPINI1 WILD-TYPE     71     72     33     63
D122V2, multiclass
        clus
vv       SERPINI1 MUTATED SERPINI1 WILD-TYPE
  CLUS_1                0                 71
  CLUS_2                4                 72
  CLUS_3                1                 33
  CLUS_4                0                 63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINI1 MUTATED        0      3      2      0      3
  SERPINI1 WILD-TYPE     16     59     49     65     52
D122V3, multiclass
        clus
vv       SERPINI1 MUTATED SERPINI1 WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                3                 59
  CLUS_3                2                 49
  CLUS_4                0                 65
  CLUS_5                3                 52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINI1 MUTATED        1      6      1      0
  SERPINI1 WILD-TYPE     97     38     49     57
D122V4, multiclass
        clus
vv       SERPINI1 MUTATED SERPINI1 WILD-TYPE
  CLUS_1                1                 97
  CLUS_2                6                 38
  CLUS_3                1                 49
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINI1 MUTATED        4      0      3      0      0
  SERPINI1 WILD-TYPE     58     59     37     37     59
D122V5, multiclass
        clus
vv       SERPINI1 MUTATED SERPINI1 WILD-TYPE
  CLUS_1                4                 58
  CLUS_2                0                 59
  CLUS_3                3                 37
  CLUS_4                0                 37
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINI1 MUTATED        2      0      5
  SERPINI1 WILD-TYPE    104     54     92
D122V6, multiclass
        clus
vv       SERPINI1 MUTATED SERPINI1 WILD-TYPE
  CLUS_1                2                104
  CLUS_2                0                 54
  CLUS_3                5                 92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINI1 MUTATED        7      0      1
  SERPINI1 WILD-TYPE    116     95     70
D122V7, multiclass
        clus
vv       SERPINI1 MUTATED SERPINI1 WILD-TYPE
  CLUS_1                7                116
  CLUS_2                0                 95
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINI1 MUTATED        7      0      1
  SERPINI1 WILD-TYPE    150     63     68
D122V8, multiclass
        clus
vv       SERPINI1 MUTATED SERPINI1 WILD-TYPE
  CLUS_1                7                150
  CLUS_2                0                 63
  CLUS_3                1                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SERPINI1 MUTATED        0      1      1      2      0      0
  SERPINI1 WILD-TYPE     33     18     58     37     16     45
D122V9, multiclass
        clus
vv       SERPINI1 MUTATED SERPINI1 WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                1                 18
  CLUS_3                1                 58
  CLUS_4                2                 37
  CLUS_5                0                 16
  CLUS_6                0                 45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SERPINI1 MUTATED        3      0      0      0      1      0
  SERPINI1 WILD-TYPE     44     39     35     32     22     35
D122V10, multiclass
        clus
vv       SERPINI1 MUTATED SERPINI1 WILD-TYPE
  CLUS_1                3                 44
  CLUS_2                0                 39
  CLUS_3                0                 35
  CLUS_4                0                 32
  CLUS_5                1                 22
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(123) Variable = AQP8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AQP8 MUTATED        0      9      1      0      1
  AQP8 WILD-TYPE     79    117     26     43     11
D123V1, multiclass
        clus
vv       AQP8 MUTATED AQP8 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            9            117
  CLUS_3            1             26
  CLUS_4            0             43
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AQP8 MUTATED        0      6      1      2
  AQP8 WILD-TYPE     71     70     33     61
D123V2, multiclass
        clus
vv       AQP8 MUTATED AQP8 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            6             70
  CLUS_3            1             33
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AQP8 MUTATED        0      4      0      2      3
  AQP8 WILD-TYPE     16     58     51     63     52
D123V3, multiclass
        clus
vv       AQP8 MUTATED AQP8 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            4             58
  CLUS_3            0             51
  CLUS_4            2             63
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AQP8 MUTATED        2      2      3      2
  AQP8 WILD-TYPE     96     42     47     55
D123V4, multiclass
        clus
vv       AQP8 MUTATED AQP8 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            2             42
  CLUS_3            3             47
  CLUS_4            2             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AQP8 MUTATED        2      1      3      3      0
  AQP8 WILD-TYPE     60     58     37     34     59
D123V5, multiclass
        clus
vv       AQP8 MUTATED AQP8 WILD-TYPE
  CLUS_1            2             60
  CLUS_2            1             58
  CLUS_3            3             37
  CLUS_4            3             34
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AQP8 MUTATED        0      2      7
  AQP8 WILD-TYPE    106     52     90
D123V6, multiclass
        clus
vv       AQP8 MUTATED AQP8 WILD-TYPE
  CLUS_1            0            106
  CLUS_2            2             52
  CLUS_3            7             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AQP8 MUTATED        8      3      0
  AQP8 WILD-TYPE    115     92     71
D123V7, multiclass
        clus
vv       AQP8 MUTATED AQP8 WILD-TYPE
  CLUS_1            8            115
  CLUS_2            3             92
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AQP8 MUTATED        9      2      0
  AQP8 WILD-TYPE    148     61     69
D123V8, multiclass
        clus
vv       AQP8 MUTATED AQP8 WILD-TYPE
  CLUS_1            9            148
  CLUS_2            2             61
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AQP8 MUTATED        0      1      1      4      0      2
  AQP8 WILD-TYPE     33     18     58     35     16     43
D123V9, multiclass
        clus
vv       AQP8 MUTATED AQP8 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             18
  CLUS_3            1             58
  CLUS_4            4             35
  CLUS_5            0             16
  CLUS_6            2             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AQP8 MUTATED        1      0      2      2      3      0
  AQP8 WILD-TYPE     46     39     33     30     20     35
D123V10, multiclass
        clus
vv       AQP8 MUTATED AQP8 WILD-TYPE
  CLUS_1            1             46
  CLUS_2            0             39
  CLUS_3            2             33
  CLUS_4            2             30
  CLUS_5            3             20
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(124) Variable = ZCCHC6 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCCHC6 MUTATED        0     11      0      1      1
  ZCCHC6 WILD-TYPE     79    115     27     42     11
D124V1, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              0               79
  CLUS_2             11              115
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCCHC6 MUTATED        1      6      1      2
  ZCCHC6 WILD-TYPE     70     70     33     61
D124V2, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              6               70
  CLUS_3              1               33
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCCHC6 MUTATED        1      3      2      1      5
  ZCCHC6 WILD-TYPE     15     59     49     64     50
D124V3, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              3               59
  CLUS_3              2               49
  CLUS_4              1               64
  CLUS_5              5               50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCCHC6 MUTATED        4      7      0      1
  ZCCHC6 WILD-TYPE     94     37     50     56
D124V4, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              4               94
  CLUS_2              7               37
  CLUS_3              0               50
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCCHC6 MUTATED        6      1      2      2      0
  ZCCHC6 WILD-TYPE     56     58     38     35     59
D124V5, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              6               56
  CLUS_2              1               58
  CLUS_3              2               38
  CLUS_4              2               35
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZCCHC6 MUTATED        3      0      8
  ZCCHC6 WILD-TYPE    103     54     89
D124V6, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              0               54
  CLUS_3              8               89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZCCHC6 MUTATED       13      0      0
  ZCCHC6 WILD-TYPE    110     95     71
D124V7, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1             13              110
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZCCHC6 MUTATED       13      0      0
  ZCCHC6 WILD-TYPE    144     63     69
D124V8, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1             13              144
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZCCHC6 MUTATED        1      2      5      1      0      0
  ZCCHC6 WILD-TYPE     32     17     54     38     16     45
D124V9, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               17
  CLUS_3              5               54
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZCCHC6 MUTATED        3      0      4      2      0      0
  ZCCHC6 WILD-TYPE     44     39     31     30     23     35
D124V10, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              4               31
  CLUS_4              2               30
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(125) Variable = ZFHX3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFHX3 MUTATED        3     28      2      4      1
  ZFHX3 WILD-TYPE     76     98     25     39     11
D125V1, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             3              76
  CLUS_2            28              98
  CLUS_3             2              25
  CLUS_4             4              39
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFHX3 MUTATED        3     21      4      3
  ZFHX3 WILD-TYPE     68     55     30     60
D125V2, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             3              68
  CLUS_2            21              55
  CLUS_3             4              30
  CLUS_4             3              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFHX3 MUTATED        1     13      8      2      9
  ZFHX3 WILD-TYPE     15     49     43     63     46
D125V3, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             1              15
  CLUS_2            13              49
  CLUS_3             8              43
  CLUS_4             2              63
  CLUS_5             9              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFHX3 MUTATED        7     15      9      2
  ZFHX3 WILD-TYPE     91     29     41     55
D125V4, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             7              91
  CLUS_2            15              29
  CLUS_3             9              41
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFHX3 MUTATED       15      3      4      9      1
  ZFHX3 WILD-TYPE     47     56     36     28     58
D125V5, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1            15              47
  CLUS_2             3              56
  CLUS_3             4              36
  CLUS_4             9              28
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFHX3 MUTATED        8      2     22
  ZFHX3 WILD-TYPE     98     52     75
D125V6, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             8              98
  CLUS_2             2              52
  CLUS_3            22              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFHX3 MUTATED       30      5      3
  ZFHX3 WILD-TYPE     93     90     68
D125V7, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1            30              93
  CLUS_2             5              90
  CLUS_3             3              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFHX3 MUTATED       30      4      4
  ZFHX3 WILD-TYPE    127     59     65
D125V8, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1            30             127
  CLUS_2             4              59
  CLUS_3             4              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZFHX3 MUTATED        3      4      9      9      3      2
  ZFHX3 WILD-TYPE     30     15     50     30     13     43
D125V9, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             4              15
  CLUS_3             9              50
  CLUS_4             9              30
  CLUS_5             3              13
  CLUS_6             2              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZFHX3 MUTATED       10      2      7      6      3      2
  ZFHX3 WILD-TYPE     37     37     28     26     20     33
D125V10, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1            10              37
  CLUS_2             2              37
  CLUS_3             7              28
  CLUS_4             6              26
  CLUS_5             3              20
  CLUS_6             2              33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(126) Variable = C19ORF40 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF40 MUTATED        1      5      0      0      0
  C19ORF40 WILD-TYPE     78    121     27     43     12
D126V1, multiclass
        clus
vv       C19ORF40 MUTATED C19ORF40 WILD-TYPE
  CLUS_1                1                 78
  CLUS_2                5                121
  CLUS_3                0                 27
  CLUS_4                0                 43
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF40 MUTATED        1      1      0      1
  C19ORF40 WILD-TYPE     70     75     34     62
D126V2, multiclass
        clus
vv       C19ORF40 MUTATED C19ORF40 WILD-TYPE
  CLUS_1                1                 70
  CLUS_2                1                 75
  CLUS_3                0                 34
  CLUS_4                1                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF40 MUTATED        2      3      1      0      0
  C19ORF40 WILD-TYPE     14     59     50     65     55
D126V3, multiclass
        clus
vv       C19ORF40 MUTATED C19ORF40 WILD-TYPE
  CLUS_1                2                 14
  CLUS_2                3                 59
  CLUS_3                1                 50
  CLUS_4                0                 65
  CLUS_5                0                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF40 MUTATED        2      3      1      0
  C19ORF40 WILD-TYPE     96     41     49     57
D126V4, multiclass
        clus
vv       C19ORF40 MUTATED C19ORF40 WILD-TYPE
  CLUS_1                2                 96
  CLUS_2                3                 41
  CLUS_3                1                 49
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF40 MUTATED        2      1      1      1      0
  C19ORF40 WILD-TYPE     60     58     39     36     59
D126V5, multiclass
        clus
vv       C19ORF40 MUTATED C19ORF40 WILD-TYPE
  CLUS_1                2                 60
  CLUS_2                1                 58
  CLUS_3                1                 39
  CLUS_4                1                 36
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF40 MUTATED        2      0      3
  C19ORF40 WILD-TYPE    104     54     94
D126V6, multiclass
        clus
vv       C19ORF40 MUTATED C19ORF40 WILD-TYPE
  CLUS_1                2                104
  CLUS_2                0                 54
  CLUS_3                3                 94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF40 MUTATED        5      0      1
  C19ORF40 WILD-TYPE    118     95     70
D126V7, multiclass
        clus
vv       C19ORF40 MUTATED C19ORF40 WILD-TYPE
  CLUS_1                5                118
  CLUS_2                0                 95
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF40 MUTATED        6      0      0
  C19ORF40 WILD-TYPE    151     63     69
D126V8, multiclass
        clus
vv       C19ORF40 MUTATED C19ORF40 WILD-TYPE
  CLUS_1                6                151
  CLUS_2                0                 63
  CLUS_3                0                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C19ORF40 MUTATED        0      1      1      1      0      0
  C19ORF40 WILD-TYPE     33     18     58     38     16     45
D126V9, multiclass
        clus
vv       C19ORF40 MUTATED C19ORF40 WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                1                 18
  CLUS_3                1                 58
  CLUS_4                1                 38
  CLUS_5                0                 16
  CLUS_6                0                 45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C19ORF40 MUTATED        2      0      1      0      0      0
  C19ORF40 WILD-TYPE     45     39     34     32     23     35
D126V10, multiclass
        clus
vv       C19ORF40 MUTATED C19ORF40 WILD-TYPE
  CLUS_1                2                 45
  CLUS_2                0                 39
  CLUS_3                1                 34
  CLUS_4                0                 32
  CLUS_5                0                 23
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(127) Variable = SPG20 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPG20 MUTATED        2     14      0      2      3
  SPG20 WILD-TYPE     77    112     27     41      9
D127V1, multiclass
        clus
vv       SPG20 MUTATED SPG20 WILD-TYPE
  CLUS_1             2              77
  CLUS_2            14             112
  CLUS_3             0              27
  CLUS_4             2              41
  CLUS_5             3               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPG20 MUTATED        0      9      3      2
  SPG20 WILD-TYPE     71     67     31     61
D127V2, multiclass
        clus
vv       SPG20 MUTATED SPG20 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             9              67
  CLUS_3             3              31
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPG20 MUTATED        1      9      1      3      4
  SPG20 WILD-TYPE     15     53     50     62     51
D127V3, multiclass
        clus
vv       SPG20 MUTATED SPG20 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             9              53
  CLUS_3             1              50
  CLUS_4             3              62
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPG20 MUTATED        4      7      5      2
  SPG20 WILD-TYPE     94     37     45     55
D127V4, multiclass
        clus
vv       SPG20 MUTATED SPG20 WILD-TYPE
  CLUS_1             4              94
  CLUS_2             7              37
  CLUS_3             5              45
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPG20 MUTATED       13      2      1      1      2
  SPG20 WILD-TYPE     49     57     39     36     57
D127V5, multiclass
        clus
vv       SPG20 MUTATED SPG20 WILD-TYPE
  CLUS_1            13              49
  CLUS_2             2              57
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPG20 MUTATED        5      2     12
  SPG20 WILD-TYPE    101     52     85
D127V6, multiclass
        clus
vv       SPG20 MUTATED SPG20 WILD-TYPE
  CLUS_1             5             101
  CLUS_2             2              52
  CLUS_3            12              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPG20 MUTATED       16      3      2
  SPG20 WILD-TYPE    107     92     69
D127V7, multiclass
        clus
vv       SPG20 MUTATED SPG20 WILD-TYPE
  CLUS_1            16             107
  CLUS_2             3              92
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPG20 MUTATED       17      3      1
  SPG20 WILD-TYPE    140     60     68
D127V8, multiclass
        clus
vv       SPG20 MUTATED SPG20 WILD-TYPE
  CLUS_1            17             140
  CLUS_2             3              60
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPG20 MUTATED        2      0      3      5      0      1
  SPG20 WILD-TYPE     31     19     56     34     16     44
D127V9, multiclass
        clus
vv       SPG20 MUTATED SPG20 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              19
  CLUS_3             3              56
  CLUS_4             5              34
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPG20 MUTATED        5      0      4      0      2      0
  SPG20 WILD-TYPE     42     39     31     32     21     35
D127V10, multiclass
        clus
vv       SPG20 MUTATED SPG20 WILD-TYPE
  CLUS_1             5              42
  CLUS_2             0              39
  CLUS_3             4              31
  CLUS_4             0              32
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(128) Variable = SREBF2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SREBF2 MUTATED        2      7      0      1      0
  SREBF2 WILD-TYPE     77    119     27     42     12
D128V1, multiclass
        clus
vv       SREBF2 MUTATED SREBF2 WILD-TYPE
  CLUS_1              2               77
  CLUS_2              7              119
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SREBF2 MUTATED        0      5      0      3
  SREBF2 WILD-TYPE     71     71     34     60
D128V2, multiclass
        clus
vv       SREBF2 MUTATED SREBF2 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              5               71
  CLUS_3              0               34
  CLUS_4              3               60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SREBF2 MUTATED        1      1      4      1      2
  SREBF2 WILD-TYPE     15     61     47     64     53
D128V3, multiclass
        clus
vv       SREBF2 MUTATED SREBF2 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              1               61
  CLUS_3              4               47
  CLUS_4              1               64
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SREBF2 MUTATED        5      3      1      0
  SREBF2 WILD-TYPE     93     41     49     57
D128V4, multiclass
        clus
vv       SREBF2 MUTATED SREBF2 WILD-TYPE
  CLUS_1              5               93
  CLUS_2              3               41
  CLUS_3              1               49
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SREBF2 MUTATED        3      1      0      2      0
  SREBF2 WILD-TYPE     59     58     40     35     59
D128V5, multiclass
        clus
vv       SREBF2 MUTATED SREBF2 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              2               35
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SREBF2 MUTATED        1      1      4
  SREBF2 WILD-TYPE    105     53     93
D128V6, multiclass
        clus
vv       SREBF2 MUTATED SREBF2 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              1               53
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SREBF2 MUTATED        9      1      0
  SREBF2 WILD-TYPE    114     94     71
D128V7, multiclass
        clus
vv       SREBF2 MUTATED SREBF2 WILD-TYPE
  CLUS_1              9              114
  CLUS_2              1               94
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SREBF2 MUTATED        8      1      1
  SREBF2 WILD-TYPE    149     62     68
D128V8, multiclass
        clus
vv       SREBF2 MUTATED SREBF2 WILD-TYPE
  CLUS_1              8              149
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SREBF2 MUTATED        1      2      3      0      0      1
  SREBF2 WILD-TYPE     32     17     56     39     16     44
D128V9, multiclass
        clus
vv       SREBF2 MUTATED SREBF2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               17
  CLUS_3              3               56
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SREBF2 MUTATED        2      1      2      1      0      1
  SREBF2 WILD-TYPE     45     38     33     31     23     34
D128V10, multiclass
        clus
vv       SREBF2 MUTATED SREBF2 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              1               38
  CLUS_3              2               33
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(129) Variable = GPR161 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR161 MUTATED        2      8      1      0      1
  GPR161 WILD-TYPE     77    118     26     43     11
D129V1, multiclass
        clus
vv       GPR161 MUTATED GPR161 WILD-TYPE
  CLUS_1              2               77
  CLUS_2              8              118
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR161 MUTATED        1      4      1      2
  GPR161 WILD-TYPE     70     72     33     61
D129V2, multiclass
        clus
vv       GPR161 MUTATED GPR161 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              4               72
  CLUS_3              1               33
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR161 MUTATED        1      6      0      0      2
  GPR161 WILD-TYPE     15     56     51     65     53
D129V3, multiclass
        clus
vv       GPR161 MUTATED GPR161 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              6               56
  CLUS_3              0               51
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR161 MUTATED        3      3      3      0
  GPR161 WILD-TYPE     95     41     47     57
D129V4, multiclass
        clus
vv       GPR161 MUTATED GPR161 WILD-TYPE
  CLUS_1              3               95
  CLUS_2              3               41
  CLUS_3              3               47
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR161 MUTATED        5      0      3      1      1
  GPR161 WILD-TYPE     57     59     37     36     58
D129V5, multiclass
        clus
vv       GPR161 MUTATED GPR161 WILD-TYPE
  CLUS_1              5               57
  CLUS_2              0               59
  CLUS_3              3               37
  CLUS_4              1               36
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR161 MUTATED        4      0      6
  GPR161 WILD-TYPE    102     54     91
D129V6, multiclass
        clus
vv       GPR161 MUTATED GPR161 WILD-TYPE
  CLUS_1              4              102
  CLUS_2              0               54
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR161 MUTATED        9      2      1
  GPR161 WILD-TYPE    114     93     70
D129V7, multiclass
        clus
vv       GPR161 MUTATED GPR161 WILD-TYPE
  CLUS_1              9              114
  CLUS_2              2               93
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR161 MUTATED        9      3      0
  GPR161 WILD-TYPE    148     60     69
D129V8, multiclass
        clus
vv       GPR161 MUTATED GPR161 WILD-TYPE
  CLUS_1              9              148
  CLUS_2              3               60
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR161 MUTATED        0      2      3      3      0      0
  GPR161 WILD-TYPE     33     17     56     36     16     45
D129V9, multiclass
        clus
vv       GPR161 MUTATED GPR161 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              2               17
  CLUS_3              3               56
  CLUS_4              3               36
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR161 MUTATED        2      0      3      2      1      0
  GPR161 WILD-TYPE     45     39     32     30     22     35
D129V10, multiclass
        clus
vv       GPR161 MUTATED GPR161 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              2               30
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(130) Variable = CR1L MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR1L MUTATED        1      9      0      1      1
  CR1L WILD-TYPE     78    117     27     42     11
D130V1, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            1             78
  CLUS_2            9            117
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CR1L MUTATED        1      5      2      3
  CR1L WILD-TYPE     70     71     32     60
D130V2, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            1             70
  CLUS_2            5             71
  CLUS_3            2             32
  CLUS_4            3             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR1L MUTATED        1      3      3      1      2
  CR1L WILD-TYPE     15     59     48     64     53
D130V3, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            1             15
  CLUS_2            3             59
  CLUS_3            3             48
  CLUS_4            1             64
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CR1L MUTATED        4      3      2      1
  CR1L WILD-TYPE     94     41     48     56
D130V4, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            4             94
  CLUS_2            3             41
  CLUS_3            2             48
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR1L MUTATED        4      2      3      2      1
  CR1L WILD-TYPE     58     57     37     35     58
D130V5, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            4             58
  CLUS_2            2             57
  CLUS_3            3             37
  CLUS_4            2             35
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CR1L MUTATED        4      2      6
  CR1L WILD-TYPE    102     52     91
D130V6, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            4            102
  CLUS_2            2             52
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CR1L MUTATED        9      2      1
  CR1L WILD-TYPE    114     93     70
D130V7, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            9            114
  CLUS_2            2             93
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CR1L MUTATED        8      2      2
  CR1L WILD-TYPE    149     61     67
D130V8, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            8            149
  CLUS_2            2             61
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CR1L MUTATED        1      1      6      0      0      1
  CR1L WILD-TYPE     32     18     53     39     16     44
D130V9, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            6             53
  CLUS_4            0             39
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CR1L MUTATED        2      2      4      0      1      0
  CR1L WILD-TYPE     45     37     31     32     22     35
D130V10, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            2             45
  CLUS_2            2             37
  CLUS_3            4             31
  CLUS_4            0             32
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(131) Variable = RGL2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGL2 MUTATED        1      8      2      0      1
  RGL2 WILD-TYPE     78    118     25     43     11
D131V1, multiclass
        clus
vv       RGL2 MUTATED RGL2 WILD-TYPE
  CLUS_1            1             78
  CLUS_2            8            118
  CLUS_3            2             25
  CLUS_4            0             43
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGL2 MUTATED        1      7      1      1
  RGL2 WILD-TYPE     70     69     33     62
D131V2, multiclass
        clus
vv       RGL2 MUTATED RGL2 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            7             69
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGL2 MUTATED        1      2      3      0      4
  RGL2 WILD-TYPE     15     60     48     65     51
D131V3, multiclass
        clus
vv       RGL2 MUTATED RGL2 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            2             60
  CLUS_3            3             48
  CLUS_4            0             65
  CLUS_5            4             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGL2 MUTATED        3      6      1      0
  RGL2 WILD-TYPE     95     38     49     57
D131V4, multiclass
        clus
vv       RGL2 MUTATED RGL2 WILD-TYPE
  CLUS_1            3             95
  CLUS_2            6             38
  CLUS_3            1             49
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGL2 MUTATED        7      0      0      2      1
  RGL2 WILD-TYPE     55     59     40     35     58
D131V5, multiclass
        clus
vv       RGL2 MUTATED RGL2 WILD-TYPE
  CLUS_1            7             55
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            2             35
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RGL2 MUTATED        2      0      8
  RGL2 WILD-TYPE    104     54     89
D131V6, multiclass
        clus
vv       RGL2 MUTATED RGL2 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            0             54
  CLUS_3            8             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RGL2 MUTATED        9      2      1
  RGL2 WILD-TYPE    114     93     70
D131V7, multiclass
        clus
vv       RGL2 MUTATED RGL2 WILD-TYPE
  CLUS_1            9            114
  CLUS_2            2             93
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RGL2 MUTATED       10      1      1
  RGL2 WILD-TYPE    147     62     68
D131V8, multiclass
        clus
vv       RGL2 MUTATED RGL2 WILD-TYPE
  CLUS_1           10            147
  CLUS_2            1             62
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RGL2 MUTATED        2      3      2      1      0      1
  RGL2 WILD-TYPE     31     16     57     38     16     44
D131V9, multiclass
        clus
vv       RGL2 MUTATED RGL2 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            3             16
  CLUS_3            2             57
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RGL2 MUTATED        4      1      1      1      1      1
  RGL2 WILD-TYPE     43     38     34     31     22     34
D131V10, multiclass
        clus
vv       RGL2 MUTATED RGL2 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            1             38
  CLUS_3            1             34
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(132) Variable = OGDH MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OGDH MUTATED        1      8      0      0      0
  OGDH WILD-TYPE     78    118     27     43     12
D132V1, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            1             78
  CLUS_2            8            118
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OGDH MUTATED        0      3      0      1
  OGDH WILD-TYPE     71     73     34     62
D132V2, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            0             71
  CLUS_2            3             73
  CLUS_3            0             34
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OGDH MUTATED        0      4      2      1      1
  OGDH WILD-TYPE     16     58     49     64     54
D132V3, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            0             16
  CLUS_2            4             58
  CLUS_3            2             49
  CLUS_4            1             64
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OGDH MUTATED        1      4      2      1
  OGDH WILD-TYPE     97     40     48     56
D132V4, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            1             97
  CLUS_2            4             40
  CLUS_3            2             48
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OGDH MUTATED        4      1      1      2      1
  OGDH WILD-TYPE     58     58     39     35     58
D132V5, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            4             58
  CLUS_2            1             58
  CLUS_3            1             39
  CLUS_4            2             35
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OGDH MUTATED        3      0      6
  OGDH WILD-TYPE    103     54     91
D132V6, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            3            103
  CLUS_2            0             54
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OGDH MUTATED        7      1      1
  OGDH WILD-TYPE    116     94     70
D132V7, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            7            116
  CLUS_2            1             94
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OGDH MUTATED        7      0      2
  OGDH WILD-TYPE    150     63     67
D132V8, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            7            150
  CLUS_2            0             63
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OGDH MUTATED        1      1      2      0      1      0
  OGDH WILD-TYPE     32     18     57     39     15     45
D132V9, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            2             57
  CLUS_4            0             39
  CLUS_5            1             15
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OGDH MUTATED        3      0      0      0      0      2
  OGDH WILD-TYPE     44     39     35     32     23     33
D132V10, multiclass
        clus
vv       OGDH MUTATED OGDH WILD-TYPE
  CLUS_1            3             44
  CLUS_2            0             39
  CLUS_3            0             35
  CLUS_4            0             32
  CLUS_5            0             23
  CLUS_6            2             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(133) Variable = FHOD3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHOD3 MUTATED        3     18      1      2      2
  FHOD3 WILD-TYPE     76    108     26     41     10
D133V1, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             3              76
  CLUS_2            18             108
  CLUS_3             1              26
  CLUS_4             2              41
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHOD3 MUTATED        1     13      3      0
  FHOD3 WILD-TYPE     70     63     31     63
D133V2, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             1              70
  CLUS_2            13              63
  CLUS_3             3              31
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHOD3 MUTATED        0      6      6      3      6
  FHOD3 WILD-TYPE     16     56     45     62     49
D133V3, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             6              56
  CLUS_3             6              45
  CLUS_4             3              62
  CLUS_5             6              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHOD3 MUTATED        5      8      3      5
  FHOD3 WILD-TYPE     93     36     47     52
D133V4, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             5              93
  CLUS_2             8              36
  CLUS_3             3              47
  CLUS_4             5              52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHOD3 MUTATED        7      3      4      7      2
  FHOD3 WILD-TYPE     55     56     36     30     57
D133V5, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             7              55
  CLUS_2             3              56
  CLUS_3             4              36
  CLUS_4             7              30
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FHOD3 MUTATED        5      3     15
  FHOD3 WILD-TYPE    101     51     82
D133V6, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             5             101
  CLUS_2             3              51
  CLUS_3            15              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FHOD3 MUTATED       20      4      2
  FHOD3 WILD-TYPE    103     91     69
D133V7, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1            20             103
  CLUS_2             4              91
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FHOD3 MUTATED       22      1      3
  FHOD3 WILD-TYPE    135     62     66
D133V8, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1            22             135
  CLUS_2             1              62
  CLUS_3             3              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FHOD3 MUTATED        1      2      6      5      1      0
  FHOD3 WILD-TYPE     32     17     53     34     15     45
D133V9, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              17
  CLUS_3             6              53
  CLUS_4             5              34
  CLUS_5             1              15
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FHOD3 MUTATED        5      0      3      1      5      1
  FHOD3 WILD-TYPE     42     39     32     31     18     34
D133V10, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             5              42
  CLUS_2             0              39
  CLUS_3             3              32
  CLUS_4             1              31
  CLUS_5             5              18
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(134) Variable = CABP5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CABP5 MUTATED        0      2      1      1      0
  CABP5 WILD-TYPE     79    124     26     42     12
D134V1, multiclass
        clus
vv       CABP5 MUTATED CABP5 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             2             124
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CABP5 MUTATED        0      3      1      0
  CABP5 WILD-TYPE     71     73     33     63
D134V2, multiclass
        clus
vv       CABP5 MUTATED CABP5 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             3              73
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CABP5 MUTATED        0      2      2      0      0
  CABP5 WILD-TYPE     16     60     49     65     55
D134V3, multiclass
        clus
vv       CABP5 MUTATED CABP5 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             0              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CABP5 MUTATED        0      4      0      0
  CABP5 WILD-TYPE     98     40     50     57
D134V4, multiclass
        clus
vv       CABP5 MUTATED CABP5 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             4              40
  CLUS_3             0              50
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CABP5 MUTATED        4      0      0      0      0
  CABP5 WILD-TYPE     58     59     40     37     59
D134V5, multiclass
        clus
vv       CABP5 MUTATED CABP5 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CABP5 MUTATED        0      0      4
  CABP5 WILD-TYPE    106     54     93
D134V6, multiclass
        clus
vv       CABP5 MUTATED CABP5 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              54
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CABP5 MUTATED        4      1      0
  CABP5 WILD-TYPE    119     94     71
D134V7, multiclass
        clus
vv       CABP5 MUTATED CABP5 WILD-TYPE
  CLUS_1             4             119
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CABP5 MUTATED        4      1      0
  CABP5 WILD-TYPE    153     62     69
D134V8, multiclass
        clus
vv       CABP5 MUTATED CABP5 WILD-TYPE
  CLUS_1             4             153
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CABP5 MUTATED        1      0      1      1      0      1
  CABP5 WILD-TYPE     32     19     58     38     16     44
D134V9, multiclass
        clus
vv       CABP5 MUTATED CABP5 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             1              58
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CABP5 MUTATED        2      1      1      0      0      0
  CABP5 WILD-TYPE     45     38     34     32     23     35
D134V10, multiclass
        clus
vv       CABP5 MUTATED CABP5 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              38
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(135) Variable = TP53BP2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53BP2 MUTATED        1      9      1      1      1
  TP53BP2 WILD-TYPE     78    117     26     42     11
D135V1, multiclass
        clus
vv       TP53BP2 MUTATED TP53BP2 WILD-TYPE
  CLUS_1               1                78
  CLUS_2               9               117
  CLUS_3               1                26
  CLUS_4               1                42
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53BP2 MUTATED        2      6      4      0
  TP53BP2 WILD-TYPE     69     70     30     63
D135V2, multiclass
        clus
vv       TP53BP2 MUTATED TP53BP2 WILD-TYPE
  CLUS_1               2                69
  CLUS_2               6                70
  CLUS_3               4                30
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53BP2 MUTATED        0      3      5      1      3
  TP53BP2 WILD-TYPE     16     59     46     64     52
D135V3, multiclass
        clus
vv       TP53BP2 MUTATED TP53BP2 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               3                59
  CLUS_3               5                46
  CLUS_4               1                64
  CLUS_5               3                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53BP2 MUTATED        4      5      3      0
  TP53BP2 WILD-TYPE     94     39     47     57
D135V4, multiclass
        clus
vv       TP53BP2 MUTATED TP53BP2 WILD-TYPE
  CLUS_1               4                94
  CLUS_2               5                39
  CLUS_3               3                47
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53BP2 MUTATED        9      0      1      2      1
  TP53BP2 WILD-TYPE     53     59     39     35     58
D135V5, multiclass
        clus
vv       TP53BP2 MUTATED TP53BP2 WILD-TYPE
  CLUS_1               9                53
  CLUS_2               0                59
  CLUS_3               1                39
  CLUS_4               2                35
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TP53BP2 MUTATED        3      0     10
  TP53BP2 WILD-TYPE    103     54     87
D135V6, multiclass
        clus
vv       TP53BP2 MUTATED TP53BP2 WILD-TYPE
  CLUS_1               3               103
  CLUS_2               0                54
  CLUS_3              10                87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TP53BP2 MUTATED       13      0      1
  TP53BP2 WILD-TYPE    110     95     70
D135V7, multiclass
        clus
vv       TP53BP2 MUTATED TP53BP2 WILD-TYPE
  CLUS_1              13               110
  CLUS_2               0                95
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TP53BP2 MUTATED       14      0      0
  TP53BP2 WILD-TYPE    143     63     69
D135V8, multiclass
        clus
vv       TP53BP2 MUTATED TP53BP2 WILD-TYPE
  CLUS_1              14               143
  CLUS_2               0                63
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TP53BP2 MUTATED        3      1      3      2      1      0
  TP53BP2 WILD-TYPE     30     18     56     37     15     45
D135V9, multiclass
        clus
vv       TP53BP2 MUTATED TP53BP2 WILD-TYPE
  CLUS_1               3                30
  CLUS_2               1                18
  CLUS_3               3                56
  CLUS_4               2                37
  CLUS_5               1                15
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TP53BP2 MUTATED        3      0      3      2      2      0
  TP53BP2 WILD-TYPE     44     39     32     30     21     35
D135V10, multiclass
        clus
vv       TP53BP2 MUTATED TP53BP2 WILD-TYPE
  CLUS_1               3                44
  CLUS_2               0                39
  CLUS_3               3                32
  CLUS_4               2                30
  CLUS_5               2                21
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(136) Variable = PHACTR2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR2 MUTATED        2      8      2      1      0
  PHACTR2 WILD-TYPE     77    118     25     42     12
D136V1, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               2                77
  CLUS_2               8               118
  CLUS_3               2                25
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHACTR2 MUTATED        1      9      1      0
  PHACTR2 WILD-TYPE     70     67     33     63
D136V2, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               9                67
  CLUS_3               1                33
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR2 MUTATED        1      1      2      2      3
  PHACTR2 WILD-TYPE     15     61     49     63     52
D136V3, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               1                61
  CLUS_3               2                49
  CLUS_4               2                63
  CLUS_5               3                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHACTR2 MUTATED        2      4      1      2
  PHACTR2 WILD-TYPE     96     40     49     55
D136V4, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               2                96
  CLUS_2               4                40
  CLUS_3               1                49
  CLUS_4               2                55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR2 MUTATED        7      2      1      1      1
  PHACTR2 WILD-TYPE     55     57     39     36     58
D136V5, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               7                55
  CLUS_2               2                57
  CLUS_3               1                39
  CLUS_4               1                36
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PHACTR2 MUTATED        2      1      9
  PHACTR2 WILD-TYPE    104     53     88
D136V6, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               2               104
  CLUS_2               1                53
  CLUS_3               9                88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PHACTR2 MUTATED        7      3      3
  PHACTR2 WILD-TYPE    116     92     68
D136V7, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               7               116
  CLUS_2               3                92
  CLUS_3               3                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PHACTR2 MUTATED        9      2      2
  PHACTR2 WILD-TYPE    148     61     67
D136V8, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               9               148
  CLUS_2               2                61
  CLUS_3               2                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHACTR2 MUTATED        1      1      0      4      1      2
  PHACTR2 WILD-TYPE     32     18     59     35     15     43
D136V9, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                18
  CLUS_3               0                59
  CLUS_4               4                35
  CLUS_5               1                15
  CLUS_6               2                43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHACTR2 MUTATED        3      2      0      2      1      1
  PHACTR2 WILD-TYPE     44     37     35     30     22     34
D136V10, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               3                44
  CLUS_2               2                37
  CLUS_3               0                35
  CLUS_4               2                30
  CLUS_5               1                22
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(137) Variable = FILIP1L MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FILIP1L MUTATED        1     12      1      3      0
  FILIP1L WILD-TYPE     78    114     26     40     12
D137V1, multiclass
        clus
vv       FILIP1L MUTATED FILIP1L WILD-TYPE
  CLUS_1               1                78
  CLUS_2              12               114
  CLUS_3               1                26
  CLUS_4               3                40
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FILIP1L MUTATED        3      8      3      0
  FILIP1L WILD-TYPE     68     68     31     63
D137V2, multiclass
        clus
vv       FILIP1L MUTATED FILIP1L WILD-TYPE
  CLUS_1               3                68
  CLUS_2               8                68
  CLUS_3               3                31
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FILIP1L MUTATED        0      5      6      0      5
  FILIP1L WILD-TYPE     16     57     45     65     50
D137V3, multiclass
        clus
vv       FILIP1L MUTATED FILIP1L WILD-TYPE
  CLUS_1               0                16
  CLUS_2               5                57
  CLUS_3               6                45
  CLUS_4               0                65
  CLUS_5               5                50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FILIP1L MUTATED        1     12      2      1
  FILIP1L WILD-TYPE     97     32     48     56
D137V4, multiclass
        clus
vv       FILIP1L MUTATED FILIP1L WILD-TYPE
  CLUS_1               1                97
  CLUS_2              12                32
  CLUS_3               2                48
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FILIP1L MUTATED        9      0      2      1      2
  FILIP1L WILD-TYPE     53     59     38     36     57
D137V5, multiclass
        clus
vv       FILIP1L MUTATED FILIP1L WILD-TYPE
  CLUS_1               9                53
  CLUS_2               0                59
  CLUS_3               2                38
  CLUS_4               1                36
  CLUS_5               2                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FILIP1L MUTATED        3      0     11
  FILIP1L WILD-TYPE    103     54     86
D137V6, multiclass
        clus
vv       FILIP1L MUTATED FILIP1L WILD-TYPE
  CLUS_1               3               103
  CLUS_2               0                54
  CLUS_3              11                86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FILIP1L MUTATED       13      2      2
  FILIP1L WILD-TYPE    110     93     69
D137V7, multiclass
        clus
vv       FILIP1L MUTATED FILIP1L WILD-TYPE
  CLUS_1              13               110
  CLUS_2               2                93
  CLUS_3               2                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FILIP1L MUTATED       14      1      2
  FILIP1L WILD-TYPE    143     62     67
D137V8, multiclass
        clus
vv       FILIP1L MUTATED FILIP1L WILD-TYPE
  CLUS_1              14               143
  CLUS_2               1                62
  CLUS_3               2                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FILIP1L MUTATED        3      1      5      4      0      1
  FILIP1L WILD-TYPE     30     18     54     35     16     44
D137V9, multiclass
        clus
vv       FILIP1L MUTATED FILIP1L WILD-TYPE
  CLUS_1               3                30
  CLUS_2               1                18
  CLUS_3               5                54
  CLUS_4               4                35
  CLUS_5               0                16
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FILIP1L MUTATED        5      1      1      2      4      1
  FILIP1L WILD-TYPE     42     38     34     30     19     34
D137V10, multiclass
        clus
vv       FILIP1L MUTATED FILIP1L WILD-TYPE
  CLUS_1               5                42
  CLUS_2               1                38
  CLUS_3               1                34
  CLUS_4               2                30
  CLUS_5               4                19
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(138) Variable = STAT5B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAT5B MUTATED        1      9      1      1      0
  STAT5B WILD-TYPE     78    117     26     42     12
D138V1, multiclass
        clus
vv       STAT5B MUTATED STAT5B WILD-TYPE
  CLUS_1              1               78
  CLUS_2              9              117
  CLUS_3              1               26
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAT5B MUTATED        1      6      2      1
  STAT5B WILD-TYPE     70     70     32     62
D138V2, multiclass
        clus
vv       STAT5B MUTATED STAT5B WILD-TYPE
  CLUS_1              1               70
  CLUS_2              6               70
  CLUS_3              2               32
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAT5B MUTATED        1      6      1      0      2
  STAT5B WILD-TYPE     15     56     50     65     53
D138V3, multiclass
        clus
vv       STAT5B MUTATED STAT5B WILD-TYPE
  CLUS_1              1               15
  CLUS_2              6               56
  CLUS_3              1               50
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAT5B MUTATED        1      5      4      0
  STAT5B WILD-TYPE     97     39     46     57
D138V4, multiclass
        clus
vv       STAT5B MUTATED STAT5B WILD-TYPE
  CLUS_1              1               97
  CLUS_2              5               39
  CLUS_3              4               46
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAT5B MUTATED        6      0      1      2      0
  STAT5B WILD-TYPE     56     59     39     35     59
D138V5, multiclass
        clus
vv       STAT5B MUTATED STAT5B WILD-TYPE
  CLUS_1              6               56
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              2               35
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STAT5B MUTATED        1      0      8
  STAT5B WILD-TYPE    105     54     89
D138V6, multiclass
        clus
vv       STAT5B MUTATED STAT5B WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               54
  CLUS_3              8               89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STAT5B MUTATED        9      3      0
  STAT5B WILD-TYPE    114     92     71
D138V7, multiclass
        clus
vv       STAT5B MUTATED STAT5B WILD-TYPE
  CLUS_1              9              114
  CLUS_2              3               92
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STAT5B MUTATED        9      2      1
  STAT5B WILD-TYPE    148     61     68
D138V8, multiclass
        clus
vv       STAT5B MUTATED STAT5B WILD-TYPE
  CLUS_1              9              148
  CLUS_2              2               61
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STAT5B MUTATED        1      1      5      2      0      1
  STAT5B WILD-TYPE     32     18     54     37     16     44
D138V9, multiclass
        clus
vv       STAT5B MUTATED STAT5B WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              5               54
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STAT5B MUTATED        4      1      4      1      0      0
  STAT5B WILD-TYPE     43     38     31     31     23     35
D138V10, multiclass
        clus
vv       STAT5B MUTATED STAT5B WILD-TYPE
  CLUS_1              4               43
  CLUS_2              1               38
  CLUS_3              4               31
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(139) Variable = FASTKD1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FASTKD1 MUTATED        0      7      1      2      1
  FASTKD1 WILD-TYPE     79    119     26     41     11
D139V1, multiclass
        clus
vv       FASTKD1 MUTATED FASTKD1 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               7               119
  CLUS_3               1                26
  CLUS_4               2                41
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FASTKD1 MUTATED        2      6      2      1
  FASTKD1 WILD-TYPE     69     70     32     62
D139V2, multiclass
        clus
vv       FASTKD1 MUTATED FASTKD1 WILD-TYPE
  CLUS_1               2                69
  CLUS_2               6                70
  CLUS_3               2                32
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FASTKD1 MUTATED        2      4      4      0      1
  FASTKD1 WILD-TYPE     14     58     47     65     54
D139V3, multiclass
        clus
vv       FASTKD1 MUTATED FASTKD1 WILD-TYPE
  CLUS_1               2                14
  CLUS_2               4                58
  CLUS_3               4                47
  CLUS_4               0                65
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FASTKD1 MUTATED        4      4      2      1
  FASTKD1 WILD-TYPE     94     40     48     56
D139V4, multiclass
        clus
vv       FASTKD1 MUTATED FASTKD1 WILD-TYPE
  CLUS_1               4                94
  CLUS_2               4                40
  CLUS_3               2                48
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FASTKD1 MUTATED        5      1      2      1      0
  FASTKD1 WILD-TYPE     57     58     38     36     59
D139V5, multiclass
        clus
vv       FASTKD1 MUTATED FASTKD1 WILD-TYPE
  CLUS_1               5                57
  CLUS_2               1                58
  CLUS_3               2                38
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FASTKD1 MUTATED        2      1      6
  FASTKD1 WILD-TYPE    104     53     91
D139V6, multiclass
        clus
vv       FASTKD1 MUTATED FASTKD1 WILD-TYPE
  CLUS_1               2               104
  CLUS_2               1                53
  CLUS_3               6                91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FASTKD1 MUTATED        8      0      3
  FASTKD1 WILD-TYPE    115     95     68
D139V7, multiclass
        clus
vv       FASTKD1 MUTATED FASTKD1 WILD-TYPE
  CLUS_1               8               115
  CLUS_2               0                95
  CLUS_3               3                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FASTKD1 MUTATED        9      0      2
  FASTKD1 WILD-TYPE    148     63     67
D139V8, multiclass
        clus
vv       FASTKD1 MUTATED FASTKD1 WILD-TYPE
  CLUS_1               9               148
  CLUS_2               0                63
  CLUS_3               2                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FASTKD1 MUTATED        3      2      2      1      0      0
  FASTKD1 WILD-TYPE     30     17     57     38     16     45
D139V9, multiclass
        clus
vv       FASTKD1 MUTATED FASTKD1 WILD-TYPE
  CLUS_1               3                30
  CLUS_2               2                17
  CLUS_3               2                57
  CLUS_4               1                38
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FASTKD1 MUTATED        4      0      2      1      0      1
  FASTKD1 WILD-TYPE     43     39     33     31     23     34
D139V10, multiclass
        clus
vv       FASTKD1 MUTATED FASTKD1 WILD-TYPE
  CLUS_1               4                43
  CLUS_2               0                39
  CLUS_3               2                33
  CLUS_4               1                31
  CLUS_5               0                23
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(140) Variable = ATP6V1C2 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V1C2 MUTATED        0      9      1      1      1
  ATP6V1C2 WILD-TYPE     79    117     26     42     11
D140V1, multiclass
        clus
vv       ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE
  CLUS_1                0                 79
  CLUS_2                9                117
  CLUS_3                1                 26
  CLUS_4                1                 42
  CLUS_5                1                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1C2 MUTATED        0      7      2      2
  ATP6V1C2 WILD-TYPE     71     69     32     61
D140V2, multiclass
        clus
vv       ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE
  CLUS_1                0                 71
  CLUS_2                7                 69
  CLUS_3                2                 32
  CLUS_4                2                 61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V1C2 MUTATED        1      2      4      0      2
  ATP6V1C2 WILD-TYPE     15     60     47     65     53
D140V3, multiclass
        clus
vv       ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                2                 60
  CLUS_3                4                 47
  CLUS_4                0                 65
  CLUS_5                2                 53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1C2 MUTATED        2      4      2      1
  ATP6V1C2 WILD-TYPE     96     40     48     56
D140V4, multiclass
        clus
vv       ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE
  CLUS_1                2                 96
  CLUS_2                4                 40
  CLUS_3                2                 48
  CLUS_4                1                 56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V1C2 MUTATED        6      0      2      2      0
  ATP6V1C2 WILD-TYPE     56     59     38     35     59
D140V5, multiclass
        clus
vv       ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE
  CLUS_1                6                 56
  CLUS_2                0                 59
  CLUS_3                2                 38
  CLUS_4                2                 35
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ATP6V1C2 MUTATED        3      1      6
  ATP6V1C2 WILD-TYPE    103     53     91
D140V6, multiclass
        clus
vv       ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE
  CLUS_1                3                103
  CLUS_2                1                 53
  CLUS_3                6                 91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ATP6V1C2 MUTATED       11      1      0
  ATP6V1C2 WILD-TYPE    112     94     71
D140V7, multiclass
        clus
vv       ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE
  CLUS_1               11                112
  CLUS_2                1                 94
  CLUS_3                0                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ATP6V1C2 MUTATED       10      2      0
  ATP6V1C2 WILD-TYPE    147     61     69
D140V8, multiclass
        clus
vv       ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE
  CLUS_1               10                147
  CLUS_2                2                 61
  CLUS_3                0                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATP6V1C2 MUTATED        0      3      5      1      0      1
  ATP6V1C2 WILD-TYPE     33     16     54     38     16     44
D140V9, multiclass
        clus
vv       ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                3                 16
  CLUS_3                5                 54
  CLUS_4                1                 38
  CLUS_5                0                 16
  CLUS_6                1                 44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATP6V1C2 MUTATED        3      2      3      1      1      0
  ATP6V1C2 WILD-TYPE     44     37     32     31     22     35
D140V10, multiclass
        clus
vv       ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE
  CLUS_1                3                 44
  CLUS_2                2                 37
  CLUS_3                3                 32
  CLUS_4                1                 31
  CLUS_5                1                 22
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(141) Variable = ZFC3H1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFC3H1 MUTATED        1     10      1      2      1
  ZFC3H1 WILD-TYPE     78    116     26     41     11
D141V1, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              1               78
  CLUS_2             10              116
  CLUS_3              1               26
  CLUS_4              2               41
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFC3H1 MUTATED        1      7      1      2
  ZFC3H1 WILD-TYPE     70     69     33     61
D141V2, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              7               69
  CLUS_3              1               33
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFC3H1 MUTATED        1      1      2      4      5
  ZFC3H1 WILD-TYPE     15     61     49     61     50
D141V3, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              1               61
  CLUS_3              2               49
  CLUS_4              4               61
  CLUS_5              5               50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFC3H1 MUTATED        4      6      0      3
  ZFC3H1 WILD-TYPE     94     38     50     54
D141V4, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              4               94
  CLUS_2              6               38
  CLUS_3              0               50
  CLUS_4              3               54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFC3H1 MUTATED        7      1      2      3      2
  ZFC3H1 WILD-TYPE     55     58     38     34     57
D141V5, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              7               55
  CLUS_2              1               58
  CLUS_3              2               38
  CLUS_4              3               34
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZFC3H1 MUTATED        4      2      9
  ZFC3H1 WILD-TYPE    102     52     88
D141V6, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              4              102
  CLUS_2              2               52
  CLUS_3              9               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZFC3H1 MUTATED       11      2      2
  ZFC3H1 WILD-TYPE    112     93     69
D141V7, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1             11              112
  CLUS_2              2               93
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZFC3H1 MUTATED       12      1      2
  ZFC3H1 WILD-TYPE    145     62     67
D141V8, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1             12              145
  CLUS_2              1               62
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZFC3H1 MUTATED        1      3      2      2      3      0
  ZFC3H1 WILD-TYPE     32     16     57     37     13     45
D141V9, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              3               16
  CLUS_3              2               57
  CLUS_4              2               37
  CLUS_5              3               13
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZFC3H1 MUTATED        5      0      2      2      1      1
  ZFC3H1 WILD-TYPE     42     39     33     30     22     34
D141V10, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              5               42
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              2               30
  CLUS_5              1               22
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(142) Variable = GCC2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GCC2 MUTATED        0      7      0      1      2
  GCC2 WILD-TYPE     79    119     27     42     10
D142V1, multiclass
        clus
vv       GCC2 MUTATED GCC2 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            7            119
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            2             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GCC2 MUTATED        0      2      3      1
  GCC2 WILD-TYPE     71     74     31     62
D142V2, multiclass
        clus
vv       GCC2 MUTATED GCC2 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            2             74
  CLUS_3            3             31
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GCC2 MUTATED        1      6      0      0      3
  GCC2 WILD-TYPE     15     56     51     65     52
D142V3, multiclass
        clus
vv       GCC2 MUTATED GCC2 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            6             56
  CLUS_3            0             51
  CLUS_4            0             65
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GCC2 MUTATED        2      5      3      0
  GCC2 WILD-TYPE     96     39     47     57
D142V4, multiclass
        clus
vv       GCC2 MUTATED GCC2 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            5             39
  CLUS_3            3             47
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GCC2 MUTATED        9      0      0      1      0
  GCC2 WILD-TYPE     53     59     40     36     59
D142V5, multiclass
        clus
vv       GCC2 MUTATED GCC2 WILD-TYPE
  CLUS_1            9             53
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GCC2 MUTATED        4      0      6
  GCC2 WILD-TYPE    102     54     91
D142V6, multiclass
        clus
vv       GCC2 MUTATED GCC2 WILD-TYPE
  CLUS_1            4            102
  CLUS_2            0             54
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GCC2 MUTATED        9      0      1
  GCC2 WILD-TYPE    114     95     70
D142V7, multiclass
        clus
vv       GCC2 MUTATED GCC2 WILD-TYPE
  CLUS_1            9            114
  CLUS_2            0             95
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GCC2 MUTATED       10      0      0
  GCC2 WILD-TYPE    147     63     69
D142V8, multiclass
        clus
vv       GCC2 MUTATED GCC2 WILD-TYPE
  CLUS_1           10            147
  CLUS_2            0             63
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GCC2 MUTATED        1      0      2      1      0      0
  GCC2 WILD-TYPE     32     19     57     38     16     45
D142V9, multiclass
        clus
vv       GCC2 MUTATED GCC2 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             19
  CLUS_3            2             57
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GCC2 MUTATED        0      0      2      1      1      0
  GCC2 WILD-TYPE     47     39     33     31     22     35
D142V10, multiclass
        clus
vv       GCC2 MUTATED GCC2 WILD-TYPE
  CLUS_1            0             47
  CLUS_2            0             39
  CLUS_3            2             33
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(143) Variable = STAT2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAT2 MUTATED        0      5      2      1      2
  STAT2 WILD-TYPE     79    121     25     42     10
D143V1, multiclass
        clus
vv       STAT2 MUTATED STAT2 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             5             121
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAT2 MUTATED        0      5      1      1
  STAT2 WILD-TYPE     71     71     33     62
D143V2, multiclass
        clus
vv       STAT2 MUTATED STAT2 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             5              71
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAT2 MUTATED        1      4      1      0      3
  STAT2 WILD-TYPE     15     58     50     65     52
D143V3, multiclass
        clus
vv       STAT2 MUTATED STAT2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             4              58
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAT2 MUTATED        2      5      2      0
  STAT2 WILD-TYPE     96     39     48     57
D143V4, multiclass
        clus
vv       STAT2 MUTATED STAT2 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             5              39
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAT2 MUTATED        5      0      1      2      0
  STAT2 WILD-TYPE     57     59     39     35     59
D143V5, multiclass
        clus
vv       STAT2 MUTATED STAT2 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAT2 MUTATED        1      1      6
  STAT2 WILD-TYPE    105     53     91
D143V6, multiclass
        clus
vv       STAT2 MUTATED STAT2 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             1              53
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAT2 MUTATED        8      2      0
  STAT2 WILD-TYPE    115     93     71
D143V7, multiclass
        clus
vv       STAT2 MUTATED STAT2 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAT2 MUTATED        9      1      0
  STAT2 WILD-TYPE    148     62     69
D143V8, multiclass
        clus
vv       STAT2 MUTATED STAT2 WILD-TYPE
  CLUS_1             9             148
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STAT2 MUTATED        1      2      1      1      0      1
  STAT2 WILD-TYPE     32     17     58     38     16     44
D143V9, multiclass
        clus
vv       STAT2 MUTATED STAT2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              17
  CLUS_3             1              58
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STAT2 MUTATED        2      1      1      1      1      0
  STAT2 WILD-TYPE     45     38     34     31     22     35
D143V10, multiclass
        clus
vv       STAT2 MUTATED STAT2 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              38
  CLUS_3             1              34
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(144) Variable = UBQLN2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBQLN2 MUTATED        0      4      0      0      1
  UBQLN2 WILD-TYPE     79    122     27     43     11
D144V1, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              4              122
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBQLN2 MUTATED        0      2      0      2
  UBQLN2 WILD-TYPE     71     74     34     61
D144V2, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              2               74
  CLUS_3              0               34
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBQLN2 MUTATED        0      3      0      0      1
  UBQLN2 WILD-TYPE     16     59     51     65     54
D144V3, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              3               59
  CLUS_3              0               51
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBQLN2 MUTATED        0      2      2      0
  UBQLN2 WILD-TYPE     98     42     48     57
D144V4, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              2               42
  CLUS_3              2               48
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBQLN2 MUTATED        3      0      1      1      0
  UBQLN2 WILD-TYPE     59     59     39     36     59
D144V5, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UBQLN2 MUTATED        1      0      4
  UBQLN2 WILD-TYPE    105     54     93
D144V6, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               54
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UBQLN2 MUTATED        4      0      1
  UBQLN2 WILD-TYPE    119     95     70
D144V7, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              4              119
  CLUS_2              0               95
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UBQLN2 MUTATED        4      1      0
  UBQLN2 WILD-TYPE    153     62     69
D144V8, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              4              153
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UBQLN2 MUTATED        0      0      2      1      0      0
  UBQLN2 WILD-TYPE     33     19     57     38     16     45
D144V9, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               19
  CLUS_3              2               57
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UBQLN2 MUTATED        1      0      2      0      0      0
  UBQLN2 WILD-TYPE     46     39     33     32     23     35
D144V10, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(145) Variable = INF2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INF2 MUTATED        1      8      1      0      1
  INF2 WILD-TYPE     78    118     26     43     11
D145V1, multiclass
        clus
vv       INF2 MUTATED INF2 WILD-TYPE
  CLUS_1            1             78
  CLUS_2            8            118
  CLUS_3            1             26
  CLUS_4            0             43
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INF2 MUTATED        1      6      1      1
  INF2 WILD-TYPE     70     70     33     62
D145V2, multiclass
        clus
vv       INF2 MUTATED INF2 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            6             70
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INF2 MUTATED        1      3      1      0      4
  INF2 WILD-TYPE     15     59     50     65     51
D145V3, multiclass
        clus
vv       INF2 MUTATED INF2 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            3             59
  CLUS_3            1             50
  CLUS_4            0             65
  CLUS_5            4             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INF2 MUTATED        3      3      2      1
  INF2 WILD-TYPE     95     41     48     56
D145V4, multiclass
        clus
vv       INF2 MUTATED INF2 WILD-TYPE
  CLUS_1            3             95
  CLUS_2            3             41
  CLUS_3            2             48
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INF2 MUTATED        6      0      2      2      1
  INF2 WILD-TYPE     56     59     38     35     58
D145V5, multiclass
        clus
vv       INF2 MUTATED INF2 WILD-TYPE
  CLUS_1            6             56
  CLUS_2            0             59
  CLUS_3            2             38
  CLUS_4            2             35
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  INF2 MUTATED        3      0      8
  INF2 WILD-TYPE    103     54     89
D145V6, multiclass
        clus
vv       INF2 MUTATED INF2 WILD-TYPE
  CLUS_1            3            103
  CLUS_2            0             54
  CLUS_3            8             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  INF2 MUTATED        8      1      2
  INF2 WILD-TYPE    115     94     69
D145V7, multiclass
        clus
vv       INF2 MUTATED INF2 WILD-TYPE
  CLUS_1            8            115
  CLUS_2            1             94
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  INF2 MUTATED        9      1      1
  INF2 WILD-TYPE    148     62     68
D145V8, multiclass
        clus
vv       INF2 MUTATED INF2 WILD-TYPE
  CLUS_1            9            148
  CLUS_2            1             62
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  INF2 MUTATED        0      1      3      3      0      1
  INF2 WILD-TYPE     33     18     56     36     16     44
D145V9, multiclass
        clus
vv       INF2 MUTATED INF2 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             18
  CLUS_3            3             56
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  INF2 MUTATED        3      0      3      1      0      1
  INF2 WILD-TYPE     44     39     32     31     23     34
D145V10, multiclass
        clus
vv       INF2 MUTATED INF2 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            0             39
  CLUS_3            3             32
  CLUS_4            1             31
  CLUS_5            0             23
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(146) Variable = ZKSCAN5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZKSCAN5 MUTATED        0      8      0      0      1
  ZKSCAN5 WILD-TYPE     79    118     27     43     11
D146V1, multiclass
        clus
vv       ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               8               118
  CLUS_3               0                27
  CLUS_4               0                43
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZKSCAN5 MUTATED        1      3      2      2
  ZKSCAN5 WILD-TYPE     70     73     32     61
D146V2, multiclass
        clus
vv       ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               3                73
  CLUS_3               2                32
  CLUS_4               2                61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZKSCAN5 MUTATED        1      4      2      0      0
  ZKSCAN5 WILD-TYPE     15     58     49     65     55
D146V3, multiclass
        clus
vv       ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               4                58
  CLUS_3               2                49
  CLUS_4               0                65
  CLUS_5               0                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZKSCAN5 MUTATED        3      3      1      0
  ZKSCAN5 WILD-TYPE     95     41     49     57
D146V4, multiclass
        clus
vv       ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE
  CLUS_1               3                95
  CLUS_2               3                41
  CLUS_3               1                49
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZKSCAN5 MUTATED        5      0      2      2      0
  ZKSCAN5 WILD-TYPE     57     59     38     35     59
D146V5, multiclass
        clus
vv       ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE
  CLUS_1               5                57
  CLUS_2               0                59
  CLUS_3               2                38
  CLUS_4               2                35
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZKSCAN5 MUTATED        3      1      5
  ZKSCAN5 WILD-TYPE    103     53     92
D146V6, multiclass
        clus
vv       ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE
  CLUS_1               3               103
  CLUS_2               1                53
  CLUS_3               5                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZKSCAN5 MUTATED        7      2      0
  ZKSCAN5 WILD-TYPE    116     93     71
D146V7, multiclass
        clus
vv       ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE
  CLUS_1               7               116
  CLUS_2               2                93
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZKSCAN5 MUTATED        8      0      1
  ZKSCAN5 WILD-TYPE    149     63     68
D146V8, multiclass
        clus
vv       ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE
  CLUS_1               8               149
  CLUS_2               0                63
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZKSCAN5 MUTATED        0      2      3      3      0      0
  ZKSCAN5 WILD-TYPE     33     17     56     36     16     45
D146V9, multiclass
        clus
vv       ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               2                17
  CLUS_3               3                56
  CLUS_4               3                36
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZKSCAN5 MUTATED        2      0      3      0      2      1
  ZKSCAN5 WILD-TYPE     45     39     32     32     21     34
D146V10, multiclass
        clus
vv       ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE
  CLUS_1               2                45
  CLUS_2               0                39
  CLUS_3               3                32
  CLUS_4               0                32
  CLUS_5               2                21
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(147) Variable = PAMR1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAMR1 MUTATED        1     13      2      1      0
  PAMR1 WILD-TYPE     78    113     25     42     12
D147V1, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             1              78
  CLUS_2            13             113
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAMR1 MUTATED        0      7      2      1
  PAMR1 WILD-TYPE     71     69     32     62
D147V2, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             7              69
  CLUS_3             2              32
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAMR1 MUTATED        2      5      7      0      3
  PAMR1 WILD-TYPE     14     57     44     65     52
D147V3, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             5              57
  CLUS_3             7              44
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAMR1 MUTATED        7      7      3      0
  PAMR1 WILD-TYPE     91     37     47     57
D147V4, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             7              91
  CLUS_2             7              37
  CLUS_3             3              47
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAMR1 MUTATED        7      2      3      4      1
  PAMR1 WILD-TYPE     55     57     37     33     58
D147V5, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             7              55
  CLUS_2             2              57
  CLUS_3             3              37
  CLUS_4             4              33
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAMR1 MUTATED        6      1     10
  PAMR1 WILD-TYPE    100     53     87
D147V6, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             6             100
  CLUS_2             1              53
  CLUS_3            10              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAMR1 MUTATED       14      2      1
  PAMR1 WILD-TYPE    109     93     70
D147V7, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1            14             109
  CLUS_2             2              93
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAMR1 MUTATED       15      1      1
  PAMR1 WILD-TYPE    142     62     68
D147V8, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1            15             142
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PAMR1 MUTATED        1      0      5      2      0      1
  PAMR1 WILD-TYPE     32     19     54     37     16     44
D147V9, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             5              54
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PAMR1 MUTATED        3      1      4      0      1      0
  PAMR1 WILD-TYPE     44     38     31     32     22     35
D147V10, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             1              38
  CLUS_3             4              31
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(148) Variable = EPHX1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHX1 MUTATED        0      7      1      0      1
  EPHX1 WILD-TYPE     79    119     26     43     11
D148V1, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             7             119
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHX1 MUTATED        0      5      0      1
  EPHX1 WILD-TYPE     71     71     34     62
D148V2, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             5              71
  CLUS_3             0              34
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHX1 MUTATED        0      5      2      0      1
  EPHX1 WILD-TYPE     16     57     49     65     54
D148V3, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             5              57
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHX1 MUTATED        2      4      2      0
  EPHX1 WILD-TYPE     96     40     48     57
D148V4, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             4              40
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHX1 MUTATED        4      0      0      3      0
  EPHX1 WILD-TYPE     58     59     40     34     59
D148V5, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHX1 MUTATED        1      0      6
  EPHX1 WILD-TYPE    105     54     91
D148V6, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHX1 MUTATED        9      0      0
  EPHX1 WILD-TYPE    114     95     71
D148V7, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             9             114
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHX1 MUTATED        8      1      0
  EPHX1 WILD-TYPE    149     62     69
D148V8, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             8             149
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPHX1 MUTATED        0      2      4      0      0      0
  EPHX1 WILD-TYPE     33     17     55     39     16     45
D148V9, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              17
  CLUS_3             4              55
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPHX1 MUTATED        4      0      2      0      0      0
  EPHX1 WILD-TYPE     43     39     33     32     23     35
D148V10, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(149) Variable = ARID1B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1B MUTATED        1     21      1      2      1
  ARID1B WILD-TYPE     78    105     26     41     11
D149V1, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              1               78
  CLUS_2             21              105
  CLUS_3              1               26
  CLUS_4              2               41
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1B MUTATED        1     11      3      2
  ARID1B WILD-TYPE     70     65     31     61
D149V2, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              1               70
  CLUS_2             11               65
  CLUS_3              3               31
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1B MUTATED        1     10      7      2      5
  ARID1B WILD-TYPE     15     52     44     63     50
D149V3, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              1               15
  CLUS_2             10               52
  CLUS_3              7               44
  CLUS_4              2               63
  CLUS_5              5               50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1B MUTATED        7      9      7      2
  ARID1B WILD-TYPE     91     35     43     55
D149V4, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              7               91
  CLUS_2              9               35
  CLUS_3              7               43
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1B MUTATED       14      4      3      2      1
  ARID1B WILD-TYPE     48     55     37     35     58
D149V5, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1             14               48
  CLUS_2              4               55
  CLUS_3              3               37
  CLUS_4              2               35
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1B MUTATED        9      2     13
  ARID1B WILD-TYPE     97     52     84
D149V6, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              9               97
  CLUS_2              2               52
  CLUS_3             13               84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1B MUTATED       19      5      3
  ARID1B WILD-TYPE    104     90     68
D149V7, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1             19              104
  CLUS_2              5               90
  CLUS_3              3               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1B MUTATED       23      3      1
  ARID1B WILD-TYPE    134     60     68
D149V8, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1             23              134
  CLUS_2              3               60
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARID1B MUTATED        2      2      6      4      0      0
  ARID1B WILD-TYPE     31     17     53     35     16     45
D149V9, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              2               31
  CLUS_2              2               17
  CLUS_3              6               53
  CLUS_4              4               35
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARID1B MUTATED        6      0      5      1      2      0
  ARID1B WILD-TYPE     41     39     30     31     21     35
D149V10, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              6               41
  CLUS_2              0               39
  CLUS_3              5               30
  CLUS_4              1               31
  CLUS_5              2               21
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(150) Variable = ALDH3A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALDH3A1 MUTATED        0      7      1      1      1
  ALDH3A1 WILD-TYPE     79    119     26     42     11
D150V1, multiclass
        clus
vv       ALDH3A1 MUTATED ALDH3A1 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               7               119
  CLUS_3               1                26
  CLUS_4               1                42
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDH3A1 MUTATED        0      5      0      1
  ALDH3A1 WILD-TYPE     71     71     34     62
D150V2, multiclass
        clus
vv       ALDH3A1 MUTATED ALDH3A1 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               5                71
  CLUS_3               0                34
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALDH3A1 MUTATED        0      6      1      0      3
  ALDH3A1 WILD-TYPE     16     56     50     65     52
D150V3, multiclass
        clus
vv       ALDH3A1 MUTATED ALDH3A1 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               6                56
  CLUS_3               1                50
  CLUS_4               0                65
  CLUS_5               3                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDH3A1 MUTATED        2      4      4      0
  ALDH3A1 WILD-TYPE     96     40     46     57
D150V4, multiclass
        clus
vv       ALDH3A1 MUTATED ALDH3A1 WILD-TYPE
  CLUS_1               2                96
  CLUS_2               4                40
  CLUS_3               4                46
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALDH3A1 MUTATED        5      1      1      3      0
  ALDH3A1 WILD-TYPE     57     58     39     34     59
D150V5, multiclass
        clus
vv       ALDH3A1 MUTATED ALDH3A1 WILD-TYPE
  CLUS_1               5                57
  CLUS_2               1                58
  CLUS_3               1                39
  CLUS_4               3                34
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ALDH3A1 MUTATED        2      1      7
  ALDH3A1 WILD-TYPE    104     53     90
D150V6, multiclass
        clus
vv       ALDH3A1 MUTATED ALDH3A1 WILD-TYPE
  CLUS_1               2               104
  CLUS_2               1                53
  CLUS_3               7                90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ALDH3A1 MUTATED        9      1      0
  ALDH3A1 WILD-TYPE    114     94     71
D150V7, multiclass
        clus
vv       ALDH3A1 MUTATED ALDH3A1 WILD-TYPE
  CLUS_1               9               114
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ALDH3A1 MUTATED        8      1      1
  ALDH3A1 WILD-TYPE    149     62     68
D150V8, multiclass
        clus
vv       ALDH3A1 MUTATED ALDH3A1 WILD-TYPE
  CLUS_1               8               149
  CLUS_2               1                62
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ALDH3A1 MUTATED        0      2      1      3      0      0
  ALDH3A1 WILD-TYPE     33     17     58     36     16     45
D150V9, multiclass
        clus
vv       ALDH3A1 MUTATED ALDH3A1 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               2                17
  CLUS_3               1                58
  CLUS_4               3                36
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ALDH3A1 MUTATED        3      0      1      0      2      0
  ALDH3A1 WILD-TYPE     44     39     34     32     21     35
D150V10, multiclass
        clus
vv       ALDH3A1 MUTATED ALDH3A1 WILD-TYPE
  CLUS_1               3                44
  CLUS_2               0                39
  CLUS_3               1                34
  CLUS_4               0                32
  CLUS_5               2                21
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(151) Variable = FERMT2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FERMT2 MUTATED        0      6      0      1      0
  FERMT2 WILD-TYPE     79    120     27     42     12
D151V1, multiclass
        clus
vv       FERMT2 MUTATED FERMT2 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              6              120
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FERMT2 MUTATED        0      5      0      0
  FERMT2 WILD-TYPE     71     71     34     63
D151V2, multiclass
        clus
vv       FERMT2 MUTATED FERMT2 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              5               71
  CLUS_3              0               34
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FERMT2 MUTATED        0      2      0      0      4
  FERMT2 WILD-TYPE     16     60     51     65     51
D151V3, multiclass
        clus
vv       FERMT2 MUTATED FERMT2 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              2               60
  CLUS_3              0               51
  CLUS_4              0               65
  CLUS_5              4               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FERMT2 MUTATED        0      5      1      0
  FERMT2 WILD-TYPE     98     39     49     57
D151V4, multiclass
        clus
vv       FERMT2 MUTATED FERMT2 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              5               39
  CLUS_3              1               49
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FERMT2 MUTATED        4      0      1      1      0
  FERMT2 WILD-TYPE     58     59     39     36     59
D151V5, multiclass
        clus
vv       FERMT2 MUTATED FERMT2 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FERMT2 MUTATED        1      0      5
  FERMT2 WILD-TYPE    105     54     92
D151V6, multiclass
        clus
vv       FERMT2 MUTATED FERMT2 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               54
  CLUS_3              5               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FERMT2 MUTATED        5      1      1
  FERMT2 WILD-TYPE    118     94     70
D151V7, multiclass
        clus
vv       FERMT2 MUTATED FERMT2 WILD-TYPE
  CLUS_1              5              118
  CLUS_2              1               94
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FERMT2 MUTATED        7      0      0
  FERMT2 WILD-TYPE    150     63     69
D151V8, multiclass
        clus
vv       FERMT2 MUTATED FERMT2 WILD-TYPE
  CLUS_1              7              150
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FERMT2 MUTATED        1      0      0      4      0      0
  FERMT2 WILD-TYPE     32     19     59     35     16     45
D151V9, multiclass
        clus
vv       FERMT2 MUTATED FERMT2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               19
  CLUS_3              0               59
  CLUS_4              4               35
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FERMT2 MUTATED        4      0      0      0      1      0
  FERMT2 WILD-TYPE     43     39     35     32     22     35
D151V10, multiclass
        clus
vv       FERMT2 MUTATED FERMT2 WILD-TYPE
  CLUS_1              4               43
  CLUS_2              0               39
  CLUS_3              0               35
  CLUS_4              0               32
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(152) Variable = C13ORF33 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C13ORF33 MUTATED        0      4      1      1      1
  C13ORF33 WILD-TYPE     79    122     26     42     11
D152V1, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                0                 79
  CLUS_2                4                122
  CLUS_3                1                 26
  CLUS_4                1                 42
  CLUS_5                1                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C13ORF33 MUTATED        0      5      2      0
  C13ORF33 WILD-TYPE     71     71     32     63
D152V2, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                0                 71
  CLUS_2                5                 71
  CLUS_3                2                 32
  CLUS_4                0                 63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C13ORF33 MUTATED        0      3      1      0      2
  C13ORF33 WILD-TYPE     16     59     50     65     53
D152V3, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                3                 59
  CLUS_3                1                 50
  CLUS_4                0                 65
  CLUS_5                2                 53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C13ORF33 MUTATED        1      3      2      0
  C13ORF33 WILD-TYPE     97     41     48     57
D152V4, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                1                 97
  CLUS_2                3                 41
  CLUS_3                2                 48
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C13ORF33 MUTATED        4      0      1      0      0
  C13ORF33 WILD-TYPE     58     59     39     37     59
D152V5, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                4                 58
  CLUS_2                0                 59
  CLUS_3                1                 39
  CLUS_4                0                 37
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF33 MUTATED        0      0      5
  C13ORF33 WILD-TYPE    106     54     92
D152V6, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                0                106
  CLUS_2                0                 54
  CLUS_3                5                 92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF33 MUTATED        4      2      1
  C13ORF33 WILD-TYPE    119     93     70
D152V7, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                4                119
  CLUS_2                2                 93
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF33 MUTATED        6      1      0
  C13ORF33 WILD-TYPE    151     62     69
D152V8, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                6                151
  CLUS_2                1                 62
  CLUS_3                0                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C13ORF33 MUTATED        1      0      0      4      0      1
  C13ORF33 WILD-TYPE     32     19     59     35     16     44
D152V9, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                0                 19
  CLUS_3                0                 59
  CLUS_4                4                 35
  CLUS_5                0                 16
  CLUS_6                1                 44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C13ORF33 MUTATED        2      1      0      1      2      0
  C13ORF33 WILD-TYPE     45     38     35     31     21     35
D152V10, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                2                 45
  CLUS_2                1                 38
  CLUS_3                0                 35
  CLUS_4                1                 31
  CLUS_5                2                 21
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(153) Variable = OTX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OTX2 MUTATED        0      7      1      1      0
  OTX2 WILD-TYPE     79    119     26     42     12
D153V1, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            7            119
  CLUS_3            1             26
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTX2 MUTATED        0      5      0      1
  OTX2 WILD-TYPE     71     71     34     62
D153V2, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            5             71
  CLUS_3            0             34
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OTX2 MUTATED        0      2      1      1      3
  OTX2 WILD-TYPE     16     60     50     64     52
D153V3, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            2             60
  CLUS_3            1             50
  CLUS_4            1             64
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTX2 MUTATED        0      4      2      1
  OTX2 WILD-TYPE     98     40     48     56
D153V4, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            0             98
  CLUS_2            4             40
  CLUS_3            2             48
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OTX2 MUTATED        3      2      0      3      0
  OTX2 WILD-TYPE     59     57     40     34     59
D153V5, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            3             59
  CLUS_2            2             57
  CLUS_3            0             40
  CLUS_4            3             34
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OTX2 MUTATED        3      0      5
  OTX2 WILD-TYPE    103     54     92
D153V6, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            3            103
  CLUS_2            0             54
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OTX2 MUTATED        9      0      0
  OTX2 WILD-TYPE    114     95     71
D153V7, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            9            114
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OTX2 MUTATED        8      1      0
  OTX2 WILD-TYPE    149     62     69
D153V8, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            8            149
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OTX2 MUTATED        1      3      2      0      0      0
  OTX2 WILD-TYPE     32     16     57     39     16     45
D153V9, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            3             16
  CLUS_3            2             57
  CLUS_4            0             39
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OTX2 MUTATED        4      0      2      0      0      0
  OTX2 WILD-TYPE     43     39     33     32     23     35
D153V10, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            0             39
  CLUS_3            2             33
  CLUS_4            0             32
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(154) Variable = KIAA0195 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0195 MUTATED        0     12      2      1      0
  KIAA0195 WILD-TYPE     79    114     25     42     12
D154V1, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                0                 79
  CLUS_2               12                114
  CLUS_3                2                 25
  CLUS_4                1                 42
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0195 MUTATED        0     11      2      1
  KIAA0195 WILD-TYPE     71     65     32     62
D154V2, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                0                 71
  CLUS_2               11                 65
  CLUS_3                2                 32
  CLUS_4                1                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0195 MUTATED        0      3      5      0      5
  KIAA0195 WILD-TYPE     16     59     46     65     50
D154V3, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                3                 59
  CLUS_3                5                 46
  CLUS_4                0                 65
  CLUS_5                5                 50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0195 MUTATED        2     10      1      0
  KIAA0195 WILD-TYPE     96     34     49     57
D154V4, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                2                 96
  CLUS_2               10                 34
  CLUS_3                1                 49
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0195 MUTATED        7      1      0      5      0
  KIAA0195 WILD-TYPE     55     58     40     32     59
D154V5, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                7                 55
  CLUS_2                1                 58
  CLUS_3                0                 40
  CLUS_4                5                 32
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0195 MUTATED        1      0     12
  KIAA0195 WILD-TYPE    105     54     85
D154V6, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                1                105
  CLUS_2                0                 54
  CLUS_3               12                 85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0195 MUTATED       13      1      2
  KIAA0195 WILD-TYPE    110     94     69
D154V7, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1               13                110
  CLUS_2                1                 94
  CLUS_3                2                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0195 MUTATED       15      1      0
  KIAA0195 WILD-TYPE    142     62     69
D154V8, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1               15                142
  CLUS_2                1                 62
  CLUS_3                0                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0195 MUTATED        4      1      1      5      0      1
  KIAA0195 WILD-TYPE     29     18     58     34     16     44
D154V9, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                4                 29
  CLUS_2                1                 18
  CLUS_3                1                 58
  CLUS_4                5                 34
  CLUS_5                0                 16
  CLUS_6                1                 44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0195 MUTATED        9      1      0      0      2      0
  KIAA0195 WILD-TYPE     38     38     35     32     21     35
D154V10, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                9                 38
  CLUS_2                1                 38
  CLUS_3                0                 35
  CLUS_4                0                 32
  CLUS_5                2                 21
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(155) Variable = PLEKHA5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHA5 MUTATED        0     11      0      2      2
  PLEKHA5 WILD-TYPE     79    115     27     41     10
D155V1, multiclass
        clus
vv       PLEKHA5 MUTATED PLEKHA5 WILD-TYPE
  CLUS_1               0                79
  CLUS_2              11               115
  CLUS_3               0                27
  CLUS_4               2                41
  CLUS_5               2                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHA5 MUTATED        0      9      2      0
  PLEKHA5 WILD-TYPE     71     67     32     63
D155V2, multiclass
        clus
vv       PLEKHA5 MUTATED PLEKHA5 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               9                67
  CLUS_3               2                32
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHA5 MUTATED        0      7      3      0      3
  PLEKHA5 WILD-TYPE     16     55     48     65     52
D155V3, multiclass
        clus
vv       PLEKHA5 MUTATED PLEKHA5 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               7                55
  CLUS_3               3                48
  CLUS_4               0                65
  CLUS_5               3                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHA5 MUTATED        2      6      4      1
  PLEKHA5 WILD-TYPE     96     38     46     56
D155V4, multiclass
        clus
vv       PLEKHA5 MUTATED PLEKHA5 WILD-TYPE
  CLUS_1               2                96
  CLUS_2               6                38
  CLUS_3               4                46
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHA5 MUTATED        9      1      0      3      0
  PLEKHA5 WILD-TYPE     53     58     40     34     59
D155V5, multiclass
        clus
vv       PLEKHA5 MUTATED PLEKHA5 WILD-TYPE
  CLUS_1               9                53
  CLUS_2               1                58
  CLUS_3               0                40
  CLUS_4               3                34
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHA5 MUTATED        3      0     10
  PLEKHA5 WILD-TYPE    103     54     87
D155V6, multiclass
        clus
vv       PLEKHA5 MUTATED PLEKHA5 WILD-TYPE
  CLUS_1               3               103
  CLUS_2               0                54
  CLUS_3              10                87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHA5 MUTATED       14      1      0
  PLEKHA5 WILD-TYPE    109     94     71
D155V7, multiclass
        clus
vv       PLEKHA5 MUTATED PLEKHA5 WILD-TYPE
  CLUS_1              14               109
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHA5 MUTATED       15      0      0
  PLEKHA5 WILD-TYPE    142     63     69
D155V8, multiclass
        clus
vv       PLEKHA5 MUTATED PLEKHA5 WILD-TYPE
  CLUS_1              15               142
  CLUS_2               0                63
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLEKHA5 MUTATED        1      3      3      2      0      0
  PLEKHA5 WILD-TYPE     32     16     56     37     16     45
D155V9, multiclass
        clus
vv       PLEKHA5 MUTATED PLEKHA5 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               3                16
  CLUS_3               3                56
  CLUS_4               2                37
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLEKHA5 MUTATED        6      0      0      0      3      0
  PLEKHA5 WILD-TYPE     41     39     35     32     20     35
D155V10, multiclass
        clus
vv       PLEKHA5 MUTATED PLEKHA5 WILD-TYPE
  CLUS_1               6                41
  CLUS_2               0                39
  CLUS_3               0                35
  CLUS_4               0                32
  CLUS_5               3                20
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(156) Variable = EIF4G3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF4G3 MUTATED        2     10      2      0      0
  EIF4G3 WILD-TYPE     77    116     25     43     12
D156V1, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              2               77
  CLUS_2             10              116
  CLUS_3              2               25
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF4G3 MUTATED        2      9      3      0
  EIF4G3 WILD-TYPE     69     67     31     63
D156V2, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              9               67
  CLUS_3              3               31
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF4G3 MUTATED        0      3      3      0      5
  EIF4G3 WILD-TYPE     16     59     48     65     50
D156V3, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              3               59
  CLUS_3              3               48
  CLUS_4              0               65
  CLUS_5              5               50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF4G3 MUTATED        1      5      3      2
  EIF4G3 WILD-TYPE     97     39     47     55
D156V4, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              5               39
  CLUS_3              3               47
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF4G3 MUTATED        9      0      0      2      2
  EIF4G3 WILD-TYPE     53     59     40     35     57
D156V5, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              9               53
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              2               35
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF4G3 MUTATED        3      0     10
  EIF4G3 WILD-TYPE    103     54     87
D156V6, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              0               54
  CLUS_3             10               87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF4G3 MUTATED       12      2      1
  EIF4G3 WILD-TYPE    111     93     70
D156V7, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1             12              111
  CLUS_2              2               93
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF4G3 MUTATED       13      0      2
  EIF4G3 WILD-TYPE    144     63     67
D156V8, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1             13              144
  CLUS_2              0               63
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EIF4G3 MUTATED        4      1      4      4      0      1
  EIF4G3 WILD-TYPE     29     18     55     35     16     44
D156V9, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              4               29
  CLUS_2              1               18
  CLUS_3              4               55
  CLUS_4              4               35
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EIF4G3 MUTATED        5      0      3      1      4      1
  EIF4G3 WILD-TYPE     42     39     32     31     19     34
D156V10, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              5               42
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              1               31
  CLUS_5              4               19
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(157) Variable = RB1CC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RB1CC1 MUTATED        0      7      0      1      2
  RB1CC1 WILD-TYPE     79    119     27     42     10
D157V1, multiclass
        clus
vv       RB1CC1 MUTATED RB1CC1 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              7              119
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              2               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1CC1 MUTATED        0      7      0      1
  RB1CC1 WILD-TYPE     71     69     34     62
D157V2, multiclass
        clus
vv       RB1CC1 MUTATED RB1CC1 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              7               69
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RB1CC1 MUTATED        0      4      2      0      3
  RB1CC1 WILD-TYPE     16     58     49     65     52
D157V3, multiclass
        clus
vv       RB1CC1 MUTATED RB1CC1 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              4               58
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1CC1 MUTATED        1      4      3      1
  RB1CC1 WILD-TYPE     97     40     47     56
D157V4, multiclass
        clus
vv       RB1CC1 MUTATED RB1CC1 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              4               40
  CLUS_3              3               47
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RB1CC1 MUTATED        7      1      0      1      0
  RB1CC1 WILD-TYPE     55     58     40     36     59
D157V5, multiclass
        clus
vv       RB1CC1 MUTATED RB1CC1 WILD-TYPE
  CLUS_1              7               55
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RB1CC1 MUTATED        1      1      7
  RB1CC1 WILD-TYPE    105     53     90
D157V6, multiclass
        clus
vv       RB1CC1 MUTATED RB1CC1 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              1               53
  CLUS_3              7               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RB1CC1 MUTATED        7      1      2
  RB1CC1 WILD-TYPE    116     94     69
D157V7, multiclass
        clus
vv       RB1CC1 MUTATED RB1CC1 WILD-TYPE
  CLUS_1              7              116
  CLUS_2              1               94
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RB1CC1 MUTATED        8      1      1
  RB1CC1 WILD-TYPE    149     62     68
D157V8, multiclass
        clus
vv       RB1CC1 MUTATED RB1CC1 WILD-TYPE
  CLUS_1              8              149
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RB1CC1 MUTATED        1      2      1      3      0      0
  RB1CC1 WILD-TYPE     32     17     58     36     16     45
D157V9, multiclass
        clus
vv       RB1CC1 MUTATED RB1CC1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               17
  CLUS_3              1               58
  CLUS_4              3               36
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RB1CC1 MUTATED        3      0      1      1      2      0
  RB1CC1 WILD-TYPE     44     39     34     31     21     35
D157V10, multiclass
        clus
vv       RB1CC1 MUTATED RB1CC1 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              1               31
  CLUS_5              2               21
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(158) Variable = DYRK4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYRK4 MUTATED        0      7      0      1      1
  DYRK4 WILD-TYPE     79    119     27     42     11
D158V1, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             7             119
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYRK4 MUTATED        0      6      1      0
  DYRK4 WILD-TYPE     71     70     33     63
D158V2, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             6              70
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYRK4 MUTATED        0      2      2      1      3
  DYRK4 WILD-TYPE     16     60     49     64     52
D158V3, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             2              49
  CLUS_4             1              64
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYRK4 MUTATED        1      4      1      2
  DYRK4 WILD-TYPE     97     40     49     55
D158V4, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             4              40
  CLUS_3             1              49
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYRK4 MUTATED        5      2      2      0      0
  DYRK4 WILD-TYPE     57     57     38     37     59
D158V5, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             2              57
  CLUS_3             2              38
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DYRK4 MUTATED        0      2      7
  DYRK4 WILD-TYPE    106     52     90
D158V6, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             2              52
  CLUS_3             7              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DYRK4 MUTATED        5      1      3
  DYRK4 WILD-TYPE    118     94     68
D158V7, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             5             118
  CLUS_2             1              94
  CLUS_3             3              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DYRK4 MUTATED        7      1      1
  DYRK4 WILD-TYPE    150     62     68
D158V8, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             7             150
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DYRK4 MUTATED        1      1      0      4      0      0
  DYRK4 WILD-TYPE     32     18     59     35     16     45
D158V9, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             0              59
  CLUS_4             4              35
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DYRK4 MUTATED        2      0      0      3      1      0
  DYRK4 WILD-TYPE     45     39     35     29     22     35
D158V10, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             0              35
  CLUS_4             3              29
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(159) Variable = CDKN2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2A MUTATED        3      6      0      3      0
  CDKN2A WILD-TYPE     76    120     27     40     12
D159V1, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              3               76
  CLUS_2              6              120
  CLUS_3              0               27
  CLUS_4              3               40
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED        4      4      0      2
  CDKN2A WILD-TYPE     67     72     34     61
D159V2, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              4               67
  CLUS_2              4               72
  CLUS_3              0               34
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2A MUTATED        0      1      4      1      2
  CDKN2A WILD-TYPE     16     61     47     64     53
D159V3, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              0               16
  CLUS_2              1               61
  CLUS_3              4               47
  CLUS_4              1               64
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED        5      2      0      1
  CDKN2A WILD-TYPE     93     42     50     56
D159V4, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              5               93
  CLUS_2              2               42
  CLUS_3              0               50
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2A MUTATED        5      1      1      2      2
  CDKN2A WILD-TYPE     57     58     39     35     57
D159V5, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              5               57
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              2               35
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED        4      1      6
  CDKN2A WILD-TYPE    102     53     91
D159V6, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              4              102
  CLUS_2              1               53
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED        9      1      2
  CDKN2A WILD-TYPE    114     94     69
D159V7, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              9              114
  CLUS_2              1               94
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED        8      1      3
  CDKN2A WILD-TYPE    149     62     66
D159V8, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              8              149
  CLUS_2              1               62
  CLUS_3              3               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDKN2A MUTATED        1      3      1      3      0      1
  CDKN2A WILD-TYPE     32     16     58     36     16     44
D159V9, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              1               32
  CLUS_2              3               16
  CLUS_3              1               58
  CLUS_4              3               36
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDKN2A MUTATED        4      1      1      1      0      2
  CDKN2A WILD-TYPE     43     38     34     31     23     33
D159V10, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              4               43
  CLUS_2              1               38
  CLUS_3              1               34
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              2               33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(160) Variable = TRIP10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP10 MUTATED        0      4      1      1      1
  TRIP10 WILD-TYPE     79    122     26     42     11
D160V1, multiclass
        clus
vv       TRIP10 MUTATED TRIP10 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              4              122
  CLUS_3              1               26
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP10 MUTATED        0      6      0      2
  TRIP10 WILD-TYPE     71     70     34     61
D160V2, multiclass
        clus
vv       TRIP10 MUTATED TRIP10 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              6               70
  CLUS_3              0               34
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP10 MUTATED        2      3      2      0      0
  TRIP10 WILD-TYPE     14     59     49     65     55
D160V3, multiclass
        clus
vv       TRIP10 MUTATED TRIP10 WILD-TYPE
  CLUS_1              2               14
  CLUS_2              3               59
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              0               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP10 MUTATED        2      3      2      0
  TRIP10 WILD-TYPE     96     41     48     57
D160V4, multiclass
        clus
vv       TRIP10 MUTATED TRIP10 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              3               41
  CLUS_3              2               48
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP10 MUTATED        5      0      1      2      0
  TRIP10 WILD-TYPE     57     59     39     35     59
D160V5, multiclass
        clus
vv       TRIP10 MUTATED TRIP10 WILD-TYPE
  CLUS_1              5               57
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              2               35
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIP10 MUTATED        2      0      6
  TRIP10 WILD-TYPE    104     54     91
D160V6, multiclass
        clus
vv       TRIP10 MUTATED TRIP10 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              0               54
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIP10 MUTATED        7      0      1
  TRIP10 WILD-TYPE    116     95     70
D160V7, multiclass
        clus
vv       TRIP10 MUTATED TRIP10 WILD-TYPE
  CLUS_1              7              116
  CLUS_2              0               95
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIP10 MUTATED        7      1      0
  TRIP10 WILD-TYPE    150     62     69
D160V8, multiclass
        clus
vv       TRIP10 MUTATED TRIP10 WILD-TYPE
  CLUS_1              7              150
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRIP10 MUTATED        2      0      4      0      0      0
  TRIP10 WILD-TYPE     31     19     55     39     16     45
D160V9, multiclass
        clus
vv       TRIP10 MUTATED TRIP10 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               19
  CLUS_3              4               55
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRIP10 MUTATED        2      0      4      0      0      0
  TRIP10 WILD-TYPE     45     39     31     32     23     35
D160V10, multiclass
        clus
vv       TRIP10 MUTATED TRIP10 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              4               31
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(161) Variable = CTNND1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNND1 MUTATED        0     17      0      0      2
  CTNND1 WILD-TYPE     79    109     27     43     10
D161V1, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              0               79
  CLUS_2             17              109
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              2               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNND1 MUTATED        0     12      3      1
  CTNND1 WILD-TYPE     71     64     31     62
D161V2, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              0               71
  CLUS_2             12               64
  CLUS_3              3               31
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNND1 MUTATED        1      7      4      2      4
  CTNND1 WILD-TYPE     15     55     47     63     51
D161V3, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              7               55
  CLUS_3              4               47
  CLUS_4              2               63
  CLUS_5              4               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNND1 MUTATED        4      6      5      3
  CTNND1 WILD-TYPE     94     38     45     54
D161V4, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              4               94
  CLUS_2              6               38
  CLUS_3              5               45
  CLUS_4              3               54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNND1 MUTATED        9      2      1      5      0
  CTNND1 WILD-TYPE     53     57     39     32     59
D161V5, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              9               53
  CLUS_2              2               57
  CLUS_3              1               39
  CLUS_4              5               32
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNND1 MUTATED        3      3     11
  CTNND1 WILD-TYPE    103     51     86
D161V6, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              3               51
  CLUS_3             11               86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNND1 MUTATED       13      4      2
  CTNND1 WILD-TYPE    110     91     69
D161V7, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1             13              110
  CLUS_2              4               91
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNND1 MUTATED       18      1      0
  CTNND1 WILD-TYPE    139     62     69
D161V8, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1             18              139
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTNND1 MUTATED        1      3      6      4      0      1
  CTNND1 WILD-TYPE     32     16     53     35     16     44
D161V9, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              3               16
  CLUS_3              6               53
  CLUS_4              4               35
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTNND1 MUTATED        2      1      4      3      5      0
  CTNND1 WILD-TYPE     45     38     31     29     18     35
D161V10, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              1               38
  CLUS_3              4               31
  CLUS_4              3               29
  CLUS_5              5               18
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(162) Variable = ATP2A1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2A1 MUTATED        0     10      2      0      2
  ATP2A1 WILD-TYPE     79    116     25     43     10
D162V1, multiclass
        clus
vv       ATP2A1 MUTATED ATP2A1 WILD-TYPE
  CLUS_1              0               79
  CLUS_2             10              116
  CLUS_3              2               25
  CLUS_4              0               43
  CLUS_5              2               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2A1 MUTATED        1     11      0      1
  ATP2A1 WILD-TYPE     70     65     34     62
D162V2, multiclass
        clus
vv       ATP2A1 MUTATED ATP2A1 WILD-TYPE
  CLUS_1              1               70
  CLUS_2             11               65
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2A1 MUTATED        0      6      3      0      2
  ATP2A1 WILD-TYPE     16     56     48     65     53
D162V3, multiclass
        clus
vv       ATP2A1 MUTATED ATP2A1 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              6               56
  CLUS_3              3               48
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2A1 MUTATED        4      4      3      0
  ATP2A1 WILD-TYPE     94     40     47     57
D162V4, multiclass
        clus
vv       ATP2A1 MUTATED ATP2A1 WILD-TYPE
  CLUS_1              4               94
  CLUS_2              4               40
  CLUS_3              3               47
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2A1 MUTATED        6      0      2      6      0
  ATP2A1 WILD-TYPE     56     59     38     31     59
D162V5, multiclass
        clus
vv       ATP2A1 MUTATED ATP2A1 WILD-TYPE
  CLUS_1              6               56
  CLUS_2              0               59
  CLUS_3              2               38
  CLUS_4              6               31
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2A1 MUTATED        1      1     12
  ATP2A1 WILD-TYPE    105     53     85
D162V6, multiclass
        clus
vv       ATP2A1 MUTATED ATP2A1 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              1               53
  CLUS_3             12               85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2A1 MUTATED       12      2      1
  ATP2A1 WILD-TYPE    111     93     70
D162V7, multiclass
        clus
vv       ATP2A1 MUTATED ATP2A1 WILD-TYPE
  CLUS_1             12              111
  CLUS_2              2               93
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2A1 MUTATED       13      1      1
  ATP2A1 WILD-TYPE    144     62     68
D162V8, multiclass
        clus
vv       ATP2A1 MUTATED ATP2A1 WILD-TYPE
  CLUS_1             13              144
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATP2A1 MUTATED        2      3      4      3      0      0
  ATP2A1 WILD-TYPE     31     16     55     36     16     45
D162V9, multiclass
        clus
vv       ATP2A1 MUTATED ATP2A1 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              3               16
  CLUS_3              4               55
  CLUS_4              3               36
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATP2A1 MUTATED       10      0      1      0      1      0
  ATP2A1 WILD-TYPE     37     39     34     32     22     35
D162V10, multiclass
        clus
vv       ATP2A1 MUTATED ATP2A1 WILD-TYPE
  CLUS_1             10               37
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              0               32
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(163) Variable = IFRD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFRD1 MUTATED        0      7      1      0      0
  IFRD1 WILD-TYPE     79    119     26     43     12
D163V1, multiclass
        clus
vv       IFRD1 MUTATED IFRD1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             7             119
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFRD1 MUTATED        0      3      3      0
  IFRD1 WILD-TYPE     71     73     31     63
D163V2, multiclass
        clus
vv       IFRD1 MUTATED IFRD1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             3              73
  CLUS_3             3              31
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFRD1 MUTATED        0      1      1      0      5
  IFRD1 WILD-TYPE     16     61     50     65     50
D163V3, multiclass
        clus
vv       IFRD1 MUTATED IFRD1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              61
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFRD1 MUTATED        2      3      1      1
  IFRD1 WILD-TYPE     96     41     49     56
D163V4, multiclass
        clus
vv       IFRD1 MUTATED IFRD1 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             3              41
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFRD1 MUTATED        4      1      1      2      0
  IFRD1 WILD-TYPE     58     58     39     35     59
D163V5, multiclass
        clus
vv       IFRD1 MUTATED IFRD1 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFRD1 MUTATED        3      0      5
  IFRD1 WILD-TYPE    103     54     92
D163V6, multiclass
        clus
vv       IFRD1 MUTATED IFRD1 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFRD1 MUTATED        8      0      0
  IFRD1 WILD-TYPE    115     95     71
D163V7, multiclass
        clus
vv       IFRD1 MUTATED IFRD1 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFRD1 MUTATED        8      0      0
  IFRD1 WILD-TYPE    149     63     69
D163V8, multiclass
        clus
vv       IFRD1 MUTATED IFRD1 WILD-TYPE
  CLUS_1             8             149
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IFRD1 MUTATED        0      1      3      2      0      0
  IFRD1 WILD-TYPE     33     18     56     37     16     45
D163V9, multiclass
        clus
vv       IFRD1 MUTATED IFRD1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              18
  CLUS_3             3              56
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IFRD1 MUTATED        2      0      1      1      2      0
  IFRD1 WILD-TYPE     45     39     34     31     21     35
D163V10, multiclass
        clus
vv       IFRD1 MUTATED IFRD1 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             1              31
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(164) Variable = STAB1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAB1 MUTATED        0     21      1      3      2
  STAB1 WILD-TYPE     79    105     26     40     10
D164V1, multiclass
        clus
vv       STAB1 MUTATED STAB1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2            21             105
  CLUS_3             1              26
  CLUS_4             3              40
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAB1 MUTATED        0     17      3      3
  STAB1 WILD-TYPE     71     59     31     60
D164V2, multiclass
        clus
vv       STAB1 MUTATED STAB1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2            17              59
  CLUS_3             3              31
  CLUS_4             3              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAB1 MUTATED        2      6     10      0      5
  STAB1 WILD-TYPE     14     56     41     65     50
D164V3, multiclass
        clus
vv       STAB1 MUTATED STAB1 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             6              56
  CLUS_3            10              41
  CLUS_4             0              65
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAB1 MUTATED        4     15      3      1
  STAB1 WILD-TYPE     94     29     47     56
D164V4, multiclass
        clus
vv       STAB1 MUTATED STAB1 WILD-TYPE
  CLUS_1             4              94
  CLUS_2            15              29
  CLUS_3             3              47
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAB1 MUTATED       15      3      3      3      0
  STAB1 WILD-TYPE     47     56     37     34     59
D164V5, multiclass
        clus
vv       STAB1 MUTATED STAB1 WILD-TYPE
  CLUS_1            15              47
  CLUS_2             3              56
  CLUS_3             3              37
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAB1 MUTATED        3      2     19
  STAB1 WILD-TYPE    103     52     78
D164V6, multiclass
        clus
vv       STAB1 MUTATED STAB1 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             2              52
  CLUS_3            19              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAB1 MUTATED       22      3      3
  STAB1 WILD-TYPE    101     92     68
D164V7, multiclass
        clus
vv       STAB1 MUTATED STAB1 WILD-TYPE
  CLUS_1            22             101
  CLUS_2             3              92
  CLUS_3             3              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAB1 MUTATED       23      3      2
  STAB1 WILD-TYPE    134     60     67
D164V8, multiclass
        clus
vv       STAB1 MUTATED STAB1 WILD-TYPE
  CLUS_1            23             134
  CLUS_2             3              60
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STAB1 MUTATED        3      2      6      6      0      3
  STAB1 WILD-TYPE     30     17     53     33     16     42
D164V9, multiclass
        clus
vv       STAB1 MUTATED STAB1 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             2              17
  CLUS_3             6              53
  CLUS_4             6              33
  CLUS_5             0              16
  CLUS_6             3              42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STAB1 MUTATED        5      3      5      5      2      0
  STAB1 WILD-TYPE     42     36     30     27     21     35
D164V10, multiclass
        clus
vv       STAB1 MUTATED STAB1 WILD-TYPE
  CLUS_1             5              42
  CLUS_2             3              36
  CLUS_3             5              30
  CLUS_4             5              27
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(165) Variable = FBXO21 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO21 MUTATED        0     10      0      1      1
  FBXO21 WILD-TYPE     79    116     27     42     11
D165V1, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              0               79
  CLUS_2             10              116
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO21 MUTATED        0      4      0      2
  FBXO21 WILD-TYPE     71     72     34     61
D165V2, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              4               72
  CLUS_3              0               34
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO21 MUTATED        0      5      2      2      2
  FBXO21 WILD-TYPE     16     57     49     63     53
D165V3, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              5               57
  CLUS_3              2               49
  CLUS_4              2               63
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO21 MUTATED        1      6      2      2
  FBXO21 WILD-TYPE     97     38     48     55
D165V4, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              6               38
  CLUS_3              2               48
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO21 MUTATED        7      3      0      1      0
  FBXO21 WILD-TYPE     55     56     40     36     59
D165V5, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              7               55
  CLUS_2              3               56
  CLUS_3              0               40
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO21 MUTATED        2      2      7
  FBXO21 WILD-TYPE    104     52     90
D165V6, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              2               52
  CLUS_3              7               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO21 MUTATED        8      4      0
  FBXO21 WILD-TYPE    115     91     71
D165V7, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              8              115
  CLUS_2              4               91
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO21 MUTATED        9      2      1
  FBXO21 WILD-TYPE    148     61     68
D165V8, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              9              148
  CLUS_2              2               61
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBXO21 MUTATED        0      0      1      3      1      1
  FBXO21 WILD-TYPE     33     19     58     36     15     44
D165V9, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               19
  CLUS_3              1               58
  CLUS_4              3               36
  CLUS_5              1               15
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBXO21 MUTATED        1      1      1      0      2      1
  FBXO21 WILD-TYPE     46     38     34     32     21     34
D165V10, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              1               38
  CLUS_3              1               34
  CLUS_4              0               32
  CLUS_5              2               21
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(166) Variable = GALNTL1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GALNTL1 MUTATED        1      8      1      0      0
  GALNTL1 WILD-TYPE     78    118     26     43     12
D166V1, multiclass
        clus
vv       GALNTL1 MUTATED GALNTL1 WILD-TYPE
  CLUS_1               1                78
  CLUS_2               8               118
  CLUS_3               1                26
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GALNTL1 MUTATED        1      4      1      3
  GALNTL1 WILD-TYPE     70     72     33     60
D166V2, multiclass
        clus
vv       GALNTL1 MUTATED GALNTL1 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               4                72
  CLUS_3               1                33
  CLUS_4               3                60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GALNTL1 MUTATED        0      3      3      2      2
  GALNTL1 WILD-TYPE     16     59     48     63     53
D166V3, multiclass
        clus
vv       GALNTL1 MUTATED GALNTL1 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               3                59
  CLUS_3               3                48
  CLUS_4               2                63
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GALNTL1 MUTATED        2      4      2      2
  GALNTL1 WILD-TYPE     96     40     48     55
D166V4, multiclass
        clus
vv       GALNTL1 MUTATED GALNTL1 WILD-TYPE
  CLUS_1               2                96
  CLUS_2               4                40
  CLUS_3               2                48
  CLUS_4               2                55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GALNTL1 MUTATED        2      2      0      0      1
  GALNTL1 WILD-TYPE     60     57     40     37     58
D166V5, multiclass
        clus
vv       GALNTL1 MUTATED GALNTL1 WILD-TYPE
  CLUS_1               2                60
  CLUS_2               2                57
  CLUS_3               0                40
  CLUS_4               0                37
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GALNTL1 MUTATED        2      1      2
  GALNTL1 WILD-TYPE    104     53     95
D166V6, multiclass
        clus
vv       GALNTL1 MUTATED GALNTL1 WILD-TYPE
  CLUS_1               2               104
  CLUS_2               1                53
  CLUS_3               2                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GALNTL1 MUTATED        4      5      1
  GALNTL1 WILD-TYPE    119     90     70
D166V7, multiclass
        clus
vv       GALNTL1 MUTATED GALNTL1 WILD-TYPE
  CLUS_1               4               119
  CLUS_2               5                90
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GALNTL1 MUTATED        6      3      1
  GALNTL1 WILD-TYPE    151     60     68
D166V8, multiclass
        clus
vv       GALNTL1 MUTATED GALNTL1 WILD-TYPE
  CLUS_1               6               151
  CLUS_2               3                60
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GALNTL1 MUTATED        1      0      2      2      1      2
  GALNTL1 WILD-TYPE     32     19     57     37     15     43
D166V9, multiclass
        clus
vv       GALNTL1 MUTATED GALNTL1 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                19
  CLUS_3               2                57
  CLUS_4               2                37
  CLUS_5               1                15
  CLUS_6               2                43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GALNTL1 MUTATED        1      2      2      1      1      1
  GALNTL1 WILD-TYPE     46     37     33     31     22     34
D166V10, multiclass
        clus
vv       GALNTL1 MUTATED GALNTL1 WILD-TYPE
  CLUS_1               1                46
  CLUS_2               2                37
  CLUS_3               2                33
  CLUS_4               1                31
  CLUS_5               1                22
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(167) Variable = HOXD8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOXD8 MUTATED        0      6      0      1      0
  HOXD8 WILD-TYPE     79    120     27     42     12
D167V1, multiclass
        clus
vv       HOXD8 MUTATED HOXD8 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOXD8 MUTATED        0      3      1      1
  HOXD8 WILD-TYPE     71     73     33     62
D167V2, multiclass
        clus
vv       HOXD8 MUTATED HOXD8 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             3              73
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOXD8 MUTATED        1      3      2      0      1
  HOXD8 WILD-TYPE     15     59     49     65     54
D167V3, multiclass
        clus
vv       HOXD8 MUTATED HOXD8 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3              59
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOXD8 MUTATED        3      2      2      0
  HOXD8 WILD-TYPE     95     42     48     57
D167V4, multiclass
        clus
vv       HOXD8 MUTATED HOXD8 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             2              42
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOXD8 MUTATED        5      0      1      0      0
  HOXD8 WILD-TYPE     57     59     39     37     59
D167V5, multiclass
        clus
vv       HOXD8 MUTATED HOXD8 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOXD8 MUTATED        3      0      3
  HOXD8 WILD-TYPE    103     54     94
D167V6, multiclass
        clus
vv       HOXD8 MUTATED HOXD8 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOXD8 MUTATED        7      0      0
  HOXD8 WILD-TYPE    116     95     71
D167V7, multiclass
        clus
vv       HOXD8 MUTATED HOXD8 WILD-TYPE
  CLUS_1             7             116
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOXD8 MUTATED        6      0      1
  HOXD8 WILD-TYPE    151     63     68
D167V8, multiclass
        clus
vv       HOXD8 MUTATED HOXD8 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HOXD8 MUTATED        0      0      4      1      0      0
  HOXD8 WILD-TYPE     33     19     55     38     16     45
D167V9, multiclass
        clus
vv       HOXD8 MUTATED HOXD8 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              19
  CLUS_3             4              55
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HOXD8 MUTATED        1      0      3      1      0      0
  HOXD8 WILD-TYPE     46     39     32     31     23     35
D167V10, multiclass
        clus
vv       HOXD8 MUTATED HOXD8 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              39
  CLUS_3             3              32
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(168) Variable = AXIN2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AXIN2 MUTATED        1     11      1      1      1
  AXIN2 WILD-TYPE     78    115     26     42     11
D168V1, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             1              78
  CLUS_2            11             115
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AXIN2 MUTATED        0      9      1      2
  AXIN2 WILD-TYPE     71     67     33     61
D168V2, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             9              67
  CLUS_3             1              33
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AXIN2 MUTATED        0      4      3      2      4
  AXIN2 WILD-TYPE     16     58     48     63     51
D168V3, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             4              58
  CLUS_3             3              48
  CLUS_4             2              63
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AXIN2 MUTATED        3      6      2      2
  AXIN2 WILD-TYPE     95     38     48     55
D168V4, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             6              38
  CLUS_3             2              48
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AXIN2 MUTATED        7      2      0      4      0
  AXIN2 WILD-TYPE     55     57     40     33     59
D168V5, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             7              55
  CLUS_2             2              57
  CLUS_3             0              40
  CLUS_4             4              33
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AXIN2 MUTATED        1      3      9
  AXIN2 WILD-TYPE    105     51     88
D168V6, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             3              51
  CLUS_3             9              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AXIN2 MUTATED       11      2      2
  AXIN2 WILD-TYPE    112     93     69
D168V7, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1            11             112
  CLUS_2             2              93
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AXIN2 MUTATED       12      2      1
  AXIN2 WILD-TYPE    145     61     68
D168V8, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1            12             145
  CLUS_2             2              61
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AXIN2 MUTATED        1      2      2      6      0      1
  AXIN2 WILD-TYPE     32     17     57     33     16     44
D168V9, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              17
  CLUS_3             2              57
  CLUS_4             6              33
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AXIN2 MUTATED        5      1      2      2      2      0
  AXIN2 WILD-TYPE     42     38     33     30     21     35
D168V10, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             5              42
  CLUS_2             1              38
  CLUS_3             2              33
  CLUS_4             2              30
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(169) Variable = TBC1D22B MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D22B MUTATED        0      5      1      1      0
  TBC1D22B WILD-TYPE     79    121     26     42     12
D169V1, multiclass
        clus
vv       TBC1D22B MUTATED TBC1D22B WILD-TYPE
  CLUS_1                0                 79
  CLUS_2                5                121
  CLUS_3                1                 26
  CLUS_4                1                 42
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D22B MUTATED        0      4      2      0
  TBC1D22B WILD-TYPE     71     72     32     63
D169V2, multiclass
        clus
vv       TBC1D22B MUTATED TBC1D22B WILD-TYPE
  CLUS_1                0                 71
  CLUS_2                4                 72
  CLUS_3                2                 32
  CLUS_4                0                 63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D22B MUTATED        0      0      2      0      3
  TBC1D22B WILD-TYPE     16     62     49     65     52
D169V3, multiclass
        clus
vv       TBC1D22B MUTATED TBC1D22B WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                0                 62
  CLUS_3                2                 49
  CLUS_4                0                 65
  CLUS_5                3                 52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D22B MUTATED        0      5      0      0
  TBC1D22B WILD-TYPE     98     39     50     57
D169V4, multiclass
        clus
vv       TBC1D22B MUTATED TBC1D22B WILD-TYPE
  CLUS_1                0                 98
  CLUS_2                5                 39
  CLUS_3                0                 50
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D22B MUTATED        3      0      1      2      0
  TBC1D22B WILD-TYPE     59     59     39     35     59
D169V5, multiclass
        clus
vv       TBC1D22B MUTATED TBC1D22B WILD-TYPE
  CLUS_1                3                 59
  CLUS_2                0                 59
  CLUS_3                1                 39
  CLUS_4                2                 35
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TBC1D22B MUTATED        1      0      5
  TBC1D22B WILD-TYPE    105     54     92
D169V6, multiclass
        clus
vv       TBC1D22B MUTATED TBC1D22B WILD-TYPE
  CLUS_1                1                105
  CLUS_2                0                 54
  CLUS_3                5                 92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TBC1D22B MUTATED        5      1      1
  TBC1D22B WILD-TYPE    118     94     70
D169V7, multiclass
        clus
vv       TBC1D22B MUTATED TBC1D22B WILD-TYPE
  CLUS_1                5                118
  CLUS_2                1                 94
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TBC1D22B MUTATED        6      1      0
  TBC1D22B WILD-TYPE    151     62     69
D169V8, multiclass
        clus
vv       TBC1D22B MUTATED TBC1D22B WILD-TYPE
  CLUS_1                6                151
  CLUS_2                1                 62
  CLUS_3                0                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TBC1D22B MUTATED        0      0      1      3      0      1
  TBC1D22B WILD-TYPE     33     19     58     36     16     44
D169V9, multiclass
        clus
vv       TBC1D22B MUTATED TBC1D22B WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                0                 19
  CLUS_3                1                 58
  CLUS_4                3                 36
  CLUS_5                0                 16
  CLUS_6                1                 44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TBC1D22B MUTATED        2      1      1      0      1      0
  TBC1D22B WILD-TYPE     45     38     34     32     22     35
D169V10, multiclass
        clus
vv       TBC1D22B MUTATED TBC1D22B WILD-TYPE
  CLUS_1                2                 45
  CLUS_2                1                 38
  CLUS_3                1                 34
  CLUS_4                0                 32
  CLUS_5                1                 22
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(170) Variable = CFI MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CFI MUTATED        1      8      0      1      2
  CFI WILD-TYPE     78    118     27     42     10
D170V1, multiclass
        clus
vv       CFI MUTATED CFI WILD-TYPE
  CLUS_1           1            78
  CLUS_2           8           118
  CLUS_3           0            27
  CLUS_4           1            42
  CLUS_5           2            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CFI MUTATED        1      6      0      2
  CFI WILD-TYPE     70     70     34     61
D170V2, multiclass
        clus
vv       CFI MUTATED CFI WILD-TYPE
  CLUS_1           1            70
  CLUS_2           6            70
  CLUS_3           0            34
  CLUS_4           2            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CFI MUTATED        0      4      2      2      3
  CFI WILD-TYPE     16     58     49     63     52
D170V3, multiclass
        clus
vv       CFI MUTATED CFI WILD-TYPE
  CLUS_1           0            16
  CLUS_2           4            58
  CLUS_3           2            49
  CLUS_4           2            63
  CLUS_5           3            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CFI MUTATED        3      4      3      1
  CFI WILD-TYPE     95     40     47     56
D170V4, multiclass
        clus
vv       CFI MUTATED CFI WILD-TYPE
  CLUS_1           3            95
  CLUS_2           4            40
  CLUS_3           3            47
  CLUS_4           1            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CFI MUTATED        7      1      1      2      1
  CFI WILD-TYPE     55     58     39     35     58
D170V5, multiclass
        clus
vv       CFI MUTATED CFI WILD-TYPE
  CLUS_1           7            55
  CLUS_2           1            58
  CLUS_3           1            39
  CLUS_4           2            35
  CLUS_5           1            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CFI MUTATED        2      2      8
  CFI WILD-TYPE    104     52     89
D170V6, multiclass
        clus
vv       CFI MUTATED CFI WILD-TYPE
  CLUS_1           2           104
  CLUS_2           2            52
  CLUS_3           8            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CFI MUTATED        7      3      2
  CFI WILD-TYPE    116     92     69
D170V7, multiclass
        clus
vv       CFI MUTATED CFI WILD-TYPE
  CLUS_1           7           116
  CLUS_2           3            92
  CLUS_3           2            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CFI MUTATED       10      1      1
  CFI WILD-TYPE    147     62     68
D170V8, multiclass
        clus
vv       CFI MUTATED CFI WILD-TYPE
  CLUS_1          10           147
  CLUS_2           1            62
  CLUS_3           1            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CFI MUTATED        1      0      2      3      1      0
  CFI WILD-TYPE     32     19     57     36     15     45
D170V9, multiclass
        clus
vv       CFI MUTATED CFI WILD-TYPE
  CLUS_1           1            32
  CLUS_2           0            19
  CLUS_3           2            57
  CLUS_4           3            36
  CLUS_5           1            15
  CLUS_6           0            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CFI MUTATED        1      0      2      2      1      1
  CFI WILD-TYPE     46     39     33     30     22     34
D170V10, multiclass
        clus
vv       CFI MUTATED CFI WILD-TYPE
  CLUS_1           1            46
  CLUS_2           0            39
  CLUS_3           2            33
  CLUS_4           2            30
  CLUS_5           1            22
  CLUS_6           1            34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(171) Variable = MFRP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MFRP MUTATED        0      9      1      2      0
  MFRP WILD-TYPE     79    117     26     41     12
D171V1, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            0             79
  CLUS_2            9            117
  CLUS_3            1             26
  CLUS_4            2             41
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFRP MUTATED        0      8      2      0
  MFRP WILD-TYPE     71     68     32     63
D171V2, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            0             71
  CLUS_2            8             68
  CLUS_3            2             32
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MFRP MUTATED        0      3      3      0      5
  MFRP WILD-TYPE     16     59     48     65     50
D171V3, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            0             16
  CLUS_2            3             59
  CLUS_3            3             48
  CLUS_4            0             65
  CLUS_5            5             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFRP MUTATED        2      7      2      0
  MFRP WILD-TYPE     96     37     48     57
D171V4, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            2             96
  CLUS_2            7             37
  CLUS_3            2             48
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MFRP MUTATED        6      0      1      4      0
  MFRP WILD-TYPE     56     59     39     33     59
D171V5, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            6             56
  CLUS_2            0             59
  CLUS_3            1             39
  CLUS_4            4             33
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MFRP MUTATED        1      1      9
  MFRP WILD-TYPE    105     53     88
D171V6, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            1            105
  CLUS_2            1             53
  CLUS_3            9             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MFRP MUTATED       10      2      0
  MFRP WILD-TYPE    113     93     71
D171V7, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1           10            113
  CLUS_2            2             93
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MFRP MUTATED       11      0      1
  MFRP WILD-TYPE    146     63     68
D171V8, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1           11            146
  CLUS_2            0             63
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MFRP MUTATED        2      1      1      3      0      0
  MFRP WILD-TYPE     31     18     58     36     16     45
D171V9, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             18
  CLUS_3            1             58
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MFRP MUTATED        4      0      1      1      1      0
  MFRP WILD-TYPE     43     39     34     31     22     35
D171V10, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            4             43
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(172) Variable = PALB2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PALB2 MUTATED        0      7      1      1      0
  PALB2 WILD-TYPE     79    119     26     42     12
D172V1, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             7             119
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PALB2 MUTATED        0      4      3      2
  PALB2 WILD-TYPE     71     72     31     61
D172V2, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             4              72
  CLUS_3             3              31
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PALB2 MUTATED        1      5      1      0      2
  PALB2 WILD-TYPE     15     57     50     65     53
D172V3, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             5              57
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PALB2 MUTATED        1      4      4      0
  PALB2 WILD-TYPE     97     40     46     57
D172V4, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             4              40
  CLUS_3             4              46
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PALB2 MUTATED        6      0      0      1      0
  PALB2 WILD-TYPE     56     59     40     36     59
D172V5, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PALB2 MUTATED        2      0      5
  PALB2 WILD-TYPE    104     54     92
D172V6, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PALB2 MUTATED        7      2      0
  PALB2 WILD-TYPE    116     93     71
D172V7, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             7             116
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PALB2 MUTATED        7      2      0
  PALB2 WILD-TYPE    150     61     69
D172V8, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             7             150
  CLUS_2             2              61
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PALB2 MUTATED        1      0      4      2      0      1
  PALB2 WILD-TYPE     32     19     55     37     16     44
D172V9, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             4              55
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PALB2 MUTATED        2      1      4      0      1      0
  PALB2 WILD-TYPE     45     38     31     32     22     35
D172V10, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              38
  CLUS_3             4              31
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(173) Variable = FAM46D MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM46D MUTATED        3      4      1      0      1
  FAM46D WILD-TYPE     76    122     26     43     11
D173V1, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              3               76
  CLUS_2              4              122
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM46D MUTATED        1      4      0      3
  FAM46D WILD-TYPE     70     72     34     60
D173V2, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              1               70
  CLUS_2              4               72
  CLUS_3              0               34
  CLUS_4              3               60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM46D MUTATED        2      3      1      0      2
  FAM46D WILD-TYPE     14     59     50     65     53
D173V3, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              2               14
  CLUS_2              3               59
  CLUS_3              1               50
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM46D MUTATED        3      1      3      1
  FAM46D WILD-TYPE     95     43     47     56
D173V4, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              3               95
  CLUS_2              1               43
  CLUS_3              3               47
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM46D MUTATED        1      2      0      4      2
  FAM46D WILD-TYPE     61     57     40     33     57
D173V5, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              1               61
  CLUS_2              2               57
  CLUS_3              0               40
  CLUS_4              4               33
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM46D MUTATED        3      3      3
  FAM46D WILD-TYPE    103     51     94
D173V6, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              3              103
  CLUS_2              3               51
  CLUS_3              3               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM46D MUTATED        5      2      2
  FAM46D WILD-TYPE    118     93     69
D173V7, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              5              118
  CLUS_2              2               93
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM46D MUTATED        4      3      2
  FAM46D WILD-TYPE    153     60     67
D173V8, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              4              153
  CLUS_2              3               60
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM46D MUTATED        2      2      2      0      0      2
  FAM46D WILD-TYPE     31     17     57     39     16     43
D173V9, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              2               31
  CLUS_2              2               17
  CLUS_3              2               57
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              2               43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM46D MUTATED        2      3      1      0      0      2
  FAM46D WILD-TYPE     45     36     34     32     23     33
D173V10, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              2               45
  CLUS_2              3               36
  CLUS_3              1               34
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              2               33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(174) Variable = DSTN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DSTN MUTATED        0      4      0      0      0
  DSTN WILD-TYPE     79    122     27     43     12
D174V1, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            0             79
  CLUS_2            4            122
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSTN MUTATED        0      3      0      1
  DSTN WILD-TYPE     71     73     34     62
D174V2, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            0             71
  CLUS_2            3             73
  CLUS_3            0             34
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DSTN MUTATED        1      1      0      0      2
  DSTN WILD-TYPE     15     61     51     65     53
D174V3, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            1             15
  CLUS_2            1             61
  CLUS_3            0             51
  CLUS_4            0             65
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSTN MUTATED        1      2      1      0
  DSTN WILD-TYPE     97     42     49     57
D174V4, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            1             97
  CLUS_2            2             42
  CLUS_3            1             49
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DSTN MUTATED        2      0      0      1      0
  DSTN WILD-TYPE     60     59     40     36     59
D174V5, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            2             60
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DSTN MUTATED        1      0      2
  DSTN WILD-TYPE    105     54     95
D174V6, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            2             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DSTN MUTATED        5      0      0
  DSTN WILD-TYPE    118     95     71
D174V7, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            5            118
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DSTN MUTATED        5      0      0
  DSTN WILD-TYPE    152     63     69
D174V8, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            5            152
  CLUS_2            0             63
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DSTN MUTATED        2      0      2      0      0      0
  DSTN WILD-TYPE     31     19     57     39     16     45
D174V9, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             19
  CLUS_3            2             57
  CLUS_4            0             39
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DSTN MUTATED        2      0      2      0      0      0
  DSTN WILD-TYPE     45     39     33     32     23     35
D174V10, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            2             33
  CLUS_4            0             32
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(175) Variable = PHACTR4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR4 MUTATED        1      5      1      1      0
  PHACTR4 WILD-TYPE     78    121     26     42     12
D175V1, multiclass
        clus
vv       PHACTR4 MUTATED PHACTR4 WILD-TYPE
  CLUS_1               1                78
  CLUS_2               5               121
  CLUS_3               1                26
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHACTR4 MUTATED        0      7      1      0
  PHACTR4 WILD-TYPE     71     69     33     63
D175V2, multiclass
        clus
vv       PHACTR4 MUTATED PHACTR4 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               7                69
  CLUS_3               1                33
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR4 MUTATED        0      2      2      0      1
  PHACTR4 WILD-TYPE     16     60     49     65     54
D175V3, multiclass
        clus
vv       PHACTR4 MUTATED PHACTR4 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               2                60
  CLUS_3               2                49
  CLUS_4               0                65
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHACTR4 MUTATED        0      4      1      0
  PHACTR4 WILD-TYPE     98     40     49     57
D175V4, multiclass
        clus
vv       PHACTR4 MUTATED PHACTR4 WILD-TYPE
  CLUS_1               0                98
  CLUS_2               4                40
  CLUS_3               1                49
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR4 MUTATED        4      0      0      1      0
  PHACTR4 WILD-TYPE     58     59     40     36     59
D175V5, multiclass
        clus
vv       PHACTR4 MUTATED PHACTR4 WILD-TYPE
  CLUS_1               4                58
  CLUS_2               0                59
  CLUS_3               0                40
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PHACTR4 MUTATED        1      0      4
  PHACTR4 WILD-TYPE    105     54     93
D175V6, multiclass
        clus
vv       PHACTR4 MUTATED PHACTR4 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               0                54
  CLUS_3               4                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PHACTR4 MUTATED        7      1      0
  PHACTR4 WILD-TYPE    116     94     71
D175V7, multiclass
        clus
vv       PHACTR4 MUTATED PHACTR4 WILD-TYPE
  CLUS_1               7               116
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PHACTR4 MUTATED        7      1      0
  PHACTR4 WILD-TYPE    150     62     69
D175V8, multiclass
        clus
vv       PHACTR4 MUTATED PHACTR4 WILD-TYPE
  CLUS_1               7               150
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHACTR4 MUTATED        0      1      4      2      0      1
  PHACTR4 WILD-TYPE     33     18     55     37     16     44
D175V9, multiclass
        clus
vv       PHACTR4 MUTATED PHACTR4 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                18
  CLUS_3               4                55
  CLUS_4               2                37
  CLUS_5               0                16
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHACTR4 MUTATED        3      1      2      2      0      0
  PHACTR4 WILD-TYPE     44     38     33     30     23     35
D175V10, multiclass
        clus
vv       PHACTR4 MUTATED PHACTR4 WILD-TYPE
  CLUS_1               3                44
  CLUS_2               1                38
  CLUS_3               2                33
  CLUS_4               2                30
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(176) Variable = ATXN2L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATXN2L MUTATED        2     14      0      0      0
  ATXN2L WILD-TYPE     77    112     27     43     12
D176V1, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              2               77
  CLUS_2             14              112
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATXN2L MUTATED        0     10      1      2
  ATXN2L WILD-TYPE     71     66     33     61
D176V2, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              0               71
  CLUS_2             10               66
  CLUS_3              1               33
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATXN2L MUTATED        0      3      6      2      3
  ATXN2L WILD-TYPE     16     59     45     63     52
D176V3, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              0               16
  CLUS_2              3               59
  CLUS_3              6               45
  CLUS_4              2               63
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATXN2L MUTATED        2      9      2      1
  ATXN2L WILD-TYPE     96     35     48     56
D176V4, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              2               96
  CLUS_2              9               35
  CLUS_3              2               48
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATXN2L MUTATED        9      3      1      3      0
  ATXN2L WILD-TYPE     53     56     39     34     59
D176V5, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              9               53
  CLUS_2              3               56
  CLUS_3              1               39
  CLUS_4              3               34
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATXN2L MUTATED        1      2     13
  ATXN2L WILD-TYPE    105     52     84
D176V6, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              1              105
  CLUS_2              2               52
  CLUS_3             13               84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATXN2L MUTATED       14      2      1
  ATXN2L WILD-TYPE    109     93     70
D176V7, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1             14              109
  CLUS_2              2               93
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATXN2L MUTATED       14      1      2
  ATXN2L WILD-TYPE    143     62     67
D176V8, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1             14              143
  CLUS_2              1               62
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATXN2L MUTATED        1      1      3      5      1      1
  ATXN2L WILD-TYPE     32     18     56     34     15     44
D176V9, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              3               56
  CLUS_4              5               34
  CLUS_5              1               15
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATXN2L MUTATED        4      1      3      1      2      1
  ATXN2L WILD-TYPE     43     38     32     31     21     34
D176V10, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              4               43
  CLUS_2              1               38
  CLUS_3              3               32
  CLUS_4              1               31
  CLUS_5              2               21
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(177) Variable = SVIL MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SVIL MUTATED        1     21      2      2      0
  SVIL WILD-TYPE     78    105     25     41     12
D177V1, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            1             78
  CLUS_2           21            105
  CLUS_3            2             25
  CLUS_4            2             41
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SVIL MUTATED        1     16      1      3
  SVIL WILD-TYPE     70     60     33     60
D177V2, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            1             70
  CLUS_2           16             60
  CLUS_3            1             33
  CLUS_4            3             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SVIL MUTATED        3      3      9      3      4
  SVIL WILD-TYPE     13     59     42     62     51
D177V3, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            3             13
  CLUS_2            3             59
  CLUS_3            9             42
  CLUS_4            3             62
  CLUS_5            4             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SVIL MUTATED        6      9      2      5
  SVIL WILD-TYPE     92     35     48     52
D177V4, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            6             92
  CLUS_2            9             35
  CLUS_3            2             48
  CLUS_4            5             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SVIL MUTATED       14      4      4      3      0
  SVIL WILD-TYPE     48     55     36     34     59
D177V5, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1           14             48
  CLUS_2            4             55
  CLUS_3            4             36
  CLUS_4            3             34
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SVIL MUTATED        4      3     18
  SVIL WILD-TYPE    102     51     79
D177V6, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            4            102
  CLUS_2            3             51
  CLUS_3           18             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SVIL MUTATED       19      4      3
  SVIL WILD-TYPE    104     91     68
D177V7, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1           19            104
  CLUS_2            4             91
  CLUS_3            3             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SVIL MUTATED       20      4      2
  SVIL WILD-TYPE    137     59     67
D177V8, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1           20            137
  CLUS_2            4             59
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SVIL MUTATED        2      4      7      5      0      2
  SVIL WILD-TYPE     31     15     52     34     16     43
D177V9, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            2             31
  CLUS_2            4             15
  CLUS_3            7             52
  CLUS_4            5             34
  CLUS_5            0             16
  CLUS_6            2             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SVIL MUTATED        8      2      5      3      2      0
  SVIL WILD-TYPE     39     37     30     29     21     35
D177V10, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            8             39
  CLUS_2            2             37
  CLUS_3            5             30
  CLUS_4            3             29
  CLUS_5            2             21
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(178) Variable = WNK4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNK4 MUTATED        1     16      2      1      1
  WNK4 WILD-TYPE     78    110     25     42     11
D178V1, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            1             78
  CLUS_2           16            110
  CLUS_3            2             25
  CLUS_4            1             42
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK4 MUTATED        2     11      1      2
  WNK4 WILD-TYPE     69     65     33     61
D178V2, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            2             69
  CLUS_2           11             65
  CLUS_3            1             33
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNK4 MUTATED        2      6      5      0      5
  WNK4 WILD-TYPE     14     56     46     65     50
D178V3, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            6             56
  CLUS_3            5             46
  CLUS_4            0             65
  CLUS_5            5             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK4 MUTATED        5      8      4      1
  WNK4 WILD-TYPE     93     36     46     56
D178V4, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            5             93
  CLUS_2            8             36
  CLUS_3            4             46
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNK4 MUTATED        9      2      3      2      1
  WNK4 WILD-TYPE     53     57     37     35     58
D178V5, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            9             53
  CLUS_2            2             57
  CLUS_3            3             37
  CLUS_4            2             35
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNK4 MUTATED        5      2     10
  WNK4 WILD-TYPE    101     52     87
D178V6, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            5            101
  CLUS_2            2             52
  CLUS_3           10             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNK4 MUTATED       14      2      5
  WNK4 WILD-TYPE    109     93     66
D178V7, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1           14            109
  CLUS_2            2             93
  CLUS_3            5             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNK4 MUTATED       16      2      3
  WNK4 WILD-TYPE    141     61     66
D178V8, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1           16            141
  CLUS_2            2             61
  CLUS_3            3             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WNK4 MUTATED        2      2      4      6      0      1
  WNK4 WILD-TYPE     31     17     55     33     16     44
D178V9, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            2             17
  CLUS_3            4             55
  CLUS_4            6             33
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WNK4 MUTATED        4      1      4      3      1      2
  WNK4 WILD-TYPE     43     38     31     29     22     33
D178V10, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            1             38
  CLUS_3            4             31
  CLUS_4            3             29
  CLUS_5            1             22
  CLUS_6            2             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(179) Variable = ACVR1B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACVR1B MUTATED        0      8      1      1      1
  ACVR1B WILD-TYPE     79    118     26     42     11
D179V1, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              0               79
  CLUS_2              8              118
  CLUS_3              1               26
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR1B MUTATED        1      6      0      1
  ACVR1B WILD-TYPE     70     70     34     62
D179V2, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              1               70
  CLUS_2              6               70
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACVR1B MUTATED        0      3      3      1      4
  ACVR1B WILD-TYPE     16     59     48     64     51
D179V3, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              0               16
  CLUS_2              3               59
  CLUS_3              3               48
  CLUS_4              1               64
  CLUS_5              4               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR1B MUTATED        2      6      2      1
  ACVR1B WILD-TYPE     96     38     48     56
D179V4, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              2               96
  CLUS_2              6               38
  CLUS_3              2               48
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACVR1B MUTATED        2      0      0      6      0
  ACVR1B WILD-TYPE     60     59     40     31     59
D179V5, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              2               60
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              6               31
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR1B MUTATED        2      0      6
  ACVR1B WILD-TYPE    104     54     91
D179V6, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              2              104
  CLUS_2              0               54
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR1B MUTATED        9      2      0
  ACVR1B WILD-TYPE    114     93     71
D179V7, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              9              114
  CLUS_2              2               93
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR1B MUTATED       10      1      0
  ACVR1B WILD-TYPE    147     62     69
D179V8, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1             10              147
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACVR1B MUTATED        1      2      3      2      0      0
  ACVR1B WILD-TYPE     32     17     56     37     16     45
D179V9, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               17
  CLUS_3              3               56
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACVR1B MUTATED        3      0      2      2      1      0
  ACVR1B WILD-TYPE     44     39     33     30     22     35
D179V10, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              2               30
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(180) Variable = C5ORF42 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C5ORF42 MUTATED        3     17      2      3      1
  C5ORF42 WILD-TYPE     76    109     25     40     11
D180V1, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1               3                76
  CLUS_2              17               109
  CLUS_3               2                25
  CLUS_4               3                40
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF42 MUTATED        3     16      4      1
  C5ORF42 WILD-TYPE     68     60     30     62
D180V2, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1               3                68
  CLUS_2              16                60
  CLUS_3               4                30
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C5ORF42 MUTATED        0     11      6      1      3
  C5ORF42 WILD-TYPE     16     51     45     64     52
D180V3, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1               0                16
  CLUS_2              11                51
  CLUS_3               6                45
  CLUS_4               1                64
  CLUS_5               3                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF42 MUTATED        0     14      6      1
  C5ORF42 WILD-TYPE     98     30     44     56
D180V4, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1               0                98
  CLUS_2              14                30
  CLUS_3               6                44
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C5ORF42 MUTATED       14      1      1      6      2
  C5ORF42 WILD-TYPE     48     58     39     31     57
D180V5, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1              14                48
  CLUS_2               1                58
  CLUS_3               1                39
  CLUS_4               6                31
  CLUS_5               2                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF42 MUTATED        4      2     18
  C5ORF42 WILD-TYPE    102     52     79
D180V6, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1               4               102
  CLUS_2               2                52
  CLUS_3              18                79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF42 MUTATED       18      4      5
  C5ORF42 WILD-TYPE    105     91     66
D180V7, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1              18               105
  CLUS_2               4                91
  CLUS_3               5                66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF42 MUTATED       22      3      2
  C5ORF42 WILD-TYPE    135     60     67
D180V8, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1              22               135
  CLUS_2               3                60
  CLUS_3               2                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C5ORF42 MUTATED        4      4      4      5      1      2
  C5ORF42 WILD-TYPE     29     15     55     34     15     43
D180V9, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1               4                29
  CLUS_2               4                15
  CLUS_3               4                55
  CLUS_4               5                34
  CLUS_5               1                15
  CLUS_6               2                43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C5ORF42 MUTATED        9      2      2      3      3      1
  C5ORF42 WILD-TYPE     38     37     33     29     20     34
D180V10, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1               9                38
  CLUS_2               2                37
  CLUS_3               2                33
  CLUS_4               3                29
  CLUS_5               3                20
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(181) Variable = ITGA6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGA6 MUTATED        0      4      2      0      0
  ITGA6 WILD-TYPE     79    122     25     43     12
D181V1, multiclass
        clus
vv       ITGA6 MUTATED ITGA6 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             4             122
  CLUS_3             2              25
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA6 MUTATED        0      2      1      1
  ITGA6 WILD-TYPE     71     74     33     62
D181V2, multiclass
        clus
vv       ITGA6 MUTATED ITGA6 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             2              74
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGA6 MUTATED        0      3      0      0      3
  ITGA6 WILD-TYPE     16     59     51     65     52
D181V3, multiclass
        clus
vv       ITGA6 MUTATED ITGA6 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              59
  CLUS_3             0              51
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA6 MUTATED        0      4      2      0
  ITGA6 WILD-TYPE     98     40     48     57
D181V4, multiclass
        clus
vv       ITGA6 MUTATED ITGA6 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             4              40
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGA6 MUTATED        4      0      0      2      0
  ITGA6 WILD-TYPE     58     59     40     35     59
D181V5, multiclass
        clus
vv       ITGA6 MUTATED ITGA6 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGA6 MUTATED        2      0      4
  ITGA6 WILD-TYPE    104     54     93
D181V6, multiclass
        clus
vv       ITGA6 MUTATED ITGA6 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGA6 MUTATED        4      0      2
  ITGA6 WILD-TYPE    119     95     69
D181V7, multiclass
        clus
vv       ITGA6 MUTATED ITGA6 WILD-TYPE
  CLUS_1             4             119
  CLUS_2             0              95
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGA6 MUTATED        5      1      0
  ITGA6 WILD-TYPE    152     62     69
D181V8, multiclass
        clus
vv       ITGA6 MUTATED ITGA6 WILD-TYPE
  CLUS_1             5             152
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ITGA6 MUTATED        0      1      1      1      0      0
  ITGA6 WILD-TYPE     33     18     58     38     16     45
D181V9, multiclass
        clus
vv       ITGA6 MUTATED ITGA6 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              18
  CLUS_3             1              58
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ITGA6 MUTATED        2      0      1      0      0      0
  ITGA6 WILD-TYPE     45     39     34     32     23     35
D181V10, multiclass
        clus
vv       ITGA6 MUTATED ITGA6 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(182) Variable = CDC25C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC25C MUTATED        0      9      1      2      0
  CDC25C WILD-TYPE     79    117     26     41     12
D182V1, multiclass
        clus
vv       CDC25C MUTATED CDC25C WILD-TYPE
  CLUS_1              0               79
  CLUS_2              9              117
  CLUS_3              1               26
  CLUS_4              2               41
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC25C MUTATED        1      6      2      1
  CDC25C WILD-TYPE     70     70     32     62
D182V2, multiclass
        clus
vv       CDC25C MUTATED CDC25C WILD-TYPE
  CLUS_1              1               70
  CLUS_2              6               70
  CLUS_3              2               32
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC25C MUTATED        0      4      3      0      3
  CDC25C WILD-TYPE     16     58     48     65     52
D182V3, multiclass
        clus
vv       CDC25C MUTATED CDC25C WILD-TYPE
  CLUS_1              0               16
  CLUS_2              4               58
  CLUS_3              3               48
  CLUS_4              0               65
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC25C MUTATED        2      5      3      0
  CDC25C WILD-TYPE     96     39     47     57
D182V4, multiclass
        clus
vv       CDC25C MUTATED CDC25C WILD-TYPE
  CLUS_1              2               96
  CLUS_2              5               39
  CLUS_3              3               47
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC25C MUTATED        4      1      0      3      1
  CDC25C WILD-TYPE     58     58     40     34     58
D182V5, multiclass
        clus
vv       CDC25C MUTATED CDC25C WILD-TYPE
  CLUS_1              4               58
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              3               34
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDC25C MUTATED        1      1      7
  CDC25C WILD-TYPE    105     53     90
D182V6, multiclass
        clus
vv       CDC25C MUTATED CDC25C WILD-TYPE
  CLUS_1              1              105
  CLUS_2              1               53
  CLUS_3              7               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDC25C MUTATED        8      3      1
  CDC25C WILD-TYPE    115     92     70
D182V7, multiclass
        clus
vv       CDC25C MUTATED CDC25C WILD-TYPE
  CLUS_1              8              115
  CLUS_2              3               92
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDC25C MUTATED        9      2      1
  CDC25C WILD-TYPE    148     61     68
D182V8, multiclass
        clus
vv       CDC25C MUTATED CDC25C WILD-TYPE
  CLUS_1              9              148
  CLUS_2              2               61
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDC25C MUTATED        1      2      1      1      0      3
  CDC25C WILD-TYPE     32     17     58     38     16     42
D182V9, multiclass
        clus
vv       CDC25C MUTATED CDC25C WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               17
  CLUS_3              1               58
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              3               42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDC25C MUTATED        2      1      1      1      2      1
  CDC25C WILD-TYPE     45     38     34     31     21     34
D182V10, multiclass
        clus
vv       CDC25C MUTATED CDC25C WILD-TYPE
  CLUS_1              2               45
  CLUS_2              1               38
  CLUS_3              1               34
  CLUS_4              1               31
  CLUS_5              2               21
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(183) Variable = FKBP9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FKBP9 MUTATED        0      5      0      0      1
  FKBP9 WILD-TYPE     79    121     27     43     11
D183V1, multiclass
        clus
vv       FKBP9 MUTATED FKBP9 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             5             121
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FKBP9 MUTATED        0      4      1      0
  FKBP9 WILD-TYPE     71     72     33     63
D183V2, multiclass
        clus
vv       FKBP9 MUTATED FKBP9 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             4              72
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FKBP9 MUTATED        0      3      1      0      1
  FKBP9 WILD-TYPE     16     59     50     65     54
D183V3, multiclass
        clus
vv       FKBP9 MUTATED FKBP9 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              59
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FKBP9 MUTATED        1      1      3      0
  FKBP9 WILD-TYPE     97     43     47     57
D183V4, multiclass
        clus
vv       FKBP9 MUTATED FKBP9 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             1              43
  CLUS_3             3              47
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FKBP9 MUTATED        4      1      0      1      0
  FKBP9 WILD-TYPE     58     58     40     36     59
D183V5, multiclass
        clus
vv       FKBP9 MUTATED FKBP9 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FKBP9 MUTATED        2      1      3
  FKBP9 WILD-TYPE    104     53     94
D183V6, multiclass
        clus
vv       FKBP9 MUTATED FKBP9 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              53
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FKBP9 MUTATED        3      2      1
  FKBP9 WILD-TYPE    120     93     70
D183V7, multiclass
        clus
vv       FKBP9 MUTATED FKBP9 WILD-TYPE
  CLUS_1             3             120
  CLUS_2             2              93
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FKBP9 MUTATED        5      1      0
  FKBP9 WILD-TYPE    152     62     69
D183V8, multiclass
        clus
vv       FKBP9 MUTATED FKBP9 WILD-TYPE
  CLUS_1             5             152
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FKBP9 MUTATED        0      0      2      2      0      0
  FKBP9 WILD-TYPE     33     19     57     37     16     45
D183V9, multiclass
        clus
vv       FKBP9 MUTATED FKBP9 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              19
  CLUS_3             2              57
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FKBP9 MUTATED        0      0      2      1      1      0
  FKBP9 WILD-TYPE     47     39     33     31     22     35
D183V10, multiclass
        clus
vv       FKBP9 MUTATED FKBP9 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(184) Variable = BEND3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BEND3 MUTATED        2      8      0      1      1
  BEND3 WILD-TYPE     77    118     27     42     11
D184V1, multiclass
        clus
vv       BEND3 MUTATED BEND3 WILD-TYPE
  CLUS_1             2              77
  CLUS_2             8             118
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BEND3 MUTATED        0      5      1      3
  BEND3 WILD-TYPE     71     71     33     60
D184V2, multiclass
        clus
vv       BEND3 MUTATED BEND3 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             5              71
  CLUS_3             1              33
  CLUS_4             3              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BEND3 MUTATED        1      6      0      2      2
  BEND3 WILD-TYPE     15     56     51     63     53
D184V3, multiclass
        clus
vv       BEND3 MUTATED BEND3 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             6              56
  CLUS_3             0              51
  CLUS_4             2              63
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BEND3 MUTATED        3      4      2      2
  BEND3 WILD-TYPE     95     40     48     55
D184V4, multiclass
        clus
vv       BEND3 MUTATED BEND3 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             4              40
  CLUS_3             2              48
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BEND3 MUTATED        7      1      0      2      0
  BEND3 WILD-TYPE     55     58     40     35     59
D184V5, multiclass
        clus
vv       BEND3 MUTATED BEND3 WILD-TYPE
  CLUS_1             7              55
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BEND3 MUTATED        4      0      6
  BEND3 WILD-TYPE    102     54     91
D184V6, multiclass
        clus
vv       BEND3 MUTATED BEND3 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             0              54
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BEND3 MUTATED       10      1      1
  BEND3 WILD-TYPE    113     94     70
D184V7, multiclass
        clus
vv       BEND3 MUTATED BEND3 WILD-TYPE
  CLUS_1            10             113
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BEND3 MUTATED       10      2      0
  BEND3 WILD-TYPE    147     61     69
D184V8, multiclass
        clus
vv       BEND3 MUTATED BEND3 WILD-TYPE
  CLUS_1            10             147
  CLUS_2             2              61
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BEND3 MUTATED        1      1      5      2      0      0
  BEND3 WILD-TYPE     32     18     54     37     16     45
D184V9, multiclass
        clus
vv       BEND3 MUTATED BEND3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             5              54
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BEND3 MUTATED        4      0      4      0      1      0
  BEND3 WILD-TYPE     43     39     31     32     22     35
D184V10, multiclass
        clus
vv       BEND3 MUTATED BEND3 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             0              39
  CLUS_3             4              31
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(185) Variable = ABCA6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCA6 MUTATED        0     11      0      1      0
  ABCA6 WILD-TYPE     79    115     27     42     12
D185V1, multiclass
        clus
vv       ABCA6 MUTATED ABCA6 WILD-TYPE
  CLUS_1             0              79
  CLUS_2            11             115
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA6 MUTATED        0      8      1      0
  ABCA6 WILD-TYPE     71     68     33     63
D185V2, multiclass
        clus
vv       ABCA6 MUTATED ABCA6 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             8              68
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCA6 MUTATED        0      2      3      1      5
  ABCA6 WILD-TYPE     16     60     48     64     50
D185V3, multiclass
        clus
vv       ABCA6 MUTATED ABCA6 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             3              48
  CLUS_4             1              64
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA6 MUTATED        3      5      2      1
  ABCA6 WILD-TYPE     95     39     48     56
D185V4, multiclass
        clus
vv       ABCA6 MUTATED ABCA6 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             5              39
  CLUS_3             2              48
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCA6 MUTATED        5      3      1      3      0
  ABCA6 WILD-TYPE     57     56     39     34     59
D185V5, multiclass
        clus
vv       ABCA6 MUTATED ABCA6 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             3              56
  CLUS_3             1              39
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA6 MUTATED        1      3      8
  ABCA6 WILD-TYPE    105     51     89
D185V6, multiclass
        clus
vv       ABCA6 MUTATED ABCA6 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             3              51
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA6 MUTATED        9      3      1
  ABCA6 WILD-TYPE    114     92     70
D185V7, multiclass
        clus
vv       ABCA6 MUTATED ABCA6 WILD-TYPE
  CLUS_1             9             114
  CLUS_2             3              92
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA6 MUTATED       10      1      2
  ABCA6 WILD-TYPE    147     62     67
D185V8, multiclass
        clus
vv       ABCA6 MUTATED ABCA6 WILD-TYPE
  CLUS_1            10             147
  CLUS_2             1              62
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABCA6 MUTATED        2      1      2      3      0      1
  ABCA6 WILD-TYPE     31     18     57     36     16     44
D185V9, multiclass
        clus
vv       ABCA6 MUTATED ABCA6 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              18
  CLUS_3             2              57
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABCA6 MUTATED        2      1      2      3      1      0
  ABCA6 WILD-TYPE     45     38     33     29     22     35
D185V10, multiclass
        clus
vv       ABCA6 MUTATED ABCA6 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              38
  CLUS_3             2              33
  CLUS_4             3              29
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(186) Variable = FOXN3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXN3 MUTATED        0      7      1      0      0
  FOXN3 WILD-TYPE     79    119     26     43     12
D186V1, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             7             119
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXN3 MUTATED        0      7      0      0
  FOXN3 WILD-TYPE     71     69     34     63
D186V2, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             7              69
  CLUS_3             0              34
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXN3 MUTATED        0      4      1      0      2
  FOXN3 WILD-TYPE     16     58     50     65     53
D186V3, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             4              58
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXN3 MUTATED        0      4      2      1
  FOXN3 WILD-TYPE     98     40     48     56
D186V4, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             4              40
  CLUS_3             2              48
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXN3 MUTATED        1      2      0      4      0
  FOXN3 WILD-TYPE     61     57     40     33     59
D186V5, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             2              57
  CLUS_3             0              40
  CLUS_4             4              33
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXN3 MUTATED        1      2      4
  FOXN3 WILD-TYPE    105     52     93
D186V6, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             2              52
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXN3 MUTATED        6      1      1
  FOXN3 WILD-TYPE    117     94     70
D186V7, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXN3 MUTATED        7      0      1
  FOXN3 WILD-TYPE    150     63     68
D186V8, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             7             150
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FOXN3 MUTATED        1      2      2      2      0      0
  FOXN3 WILD-TYPE     32     17     57     37     16     45
D186V9, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              17
  CLUS_3             2              57
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FOXN3 MUTATED        3      0      1      2      1      0
  FOXN3 WILD-TYPE     44     39     34     30     22     35
D186V10, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             2              30
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(187) Variable = BAX MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAX MUTATED        0      3      1      1      1
  BAX WILD-TYPE     79    123     26     42     11
D187V1, multiclass
        clus
vv       BAX MUTATED BAX WILD-TYPE
  CLUS_1           0            79
  CLUS_2           3           123
  CLUS_3           1            26
  CLUS_4           1            42
  CLUS_5           1            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAX MUTATED        0      5      0      0
  BAX WILD-TYPE     71     71     34     63
D187V2, multiclass
        clus
vv       BAX MUTATED BAX WILD-TYPE
  CLUS_1           0            71
  CLUS_2           5            71
  CLUS_3           0            34
  CLUS_4           0            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAX MUTATED        0      3      2      1      0
  BAX WILD-TYPE     16     59     49     64     55
D187V3, multiclass
        clus
vv       BAX MUTATED BAX WILD-TYPE
  CLUS_1           0            16
  CLUS_2           3            59
  CLUS_3           2            49
  CLUS_4           1            64
  CLUS_5           0            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAX MUTATED        0      3      2      1
  BAX WILD-TYPE     98     41     48     56
D187V4, multiclass
        clus
vv       BAX MUTATED BAX WILD-TYPE
  CLUS_1           0            98
  CLUS_2           3            41
  CLUS_3           2            48
  CLUS_4           1            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAX MUTATED        3      0      1      1      0
  BAX WILD-TYPE     59     59     39     36     59
D187V5, multiclass
        clus
vv       BAX MUTATED BAX WILD-TYPE
  CLUS_1           3            59
  CLUS_2           0            59
  CLUS_3           1            39
  CLUS_4           1            36
  CLUS_5           0            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  BAX MUTATED        0      1      4
  BAX WILD-TYPE    106     53     93
D187V6, multiclass
        clus
vv       BAX MUTATED BAX WILD-TYPE
  CLUS_1           0           106
  CLUS_2           1            53
  CLUS_3           4            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  BAX MUTATED        3      2      1
  BAX WILD-TYPE    120     93     70
D187V7, multiclass
        clus
vv       BAX MUTATED BAX WILD-TYPE
  CLUS_1           3           120
  CLUS_2           2            93
  CLUS_3           1            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  BAX MUTATED        5      1      0
  BAX WILD-TYPE    152     62     69
D187V8, multiclass
        clus
vv       BAX MUTATED BAX WILD-TYPE
  CLUS_1           5           152
  CLUS_2           1            62
  CLUS_3           0            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BAX MUTATED        0      0      0      2      0      1
  BAX WILD-TYPE     33     19     59     37     16     44
D187V9, multiclass
        clus
vv       BAX MUTATED BAX WILD-TYPE
  CLUS_1           0            33
  CLUS_2           0            19
  CLUS_3           0            59
  CLUS_4           2            37
  CLUS_5           0            16
  CLUS_6           1            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BAX MUTATED        1      0      0      0      2      0
  BAX WILD-TYPE     46     39     35     32     21     35
D187V10, multiclass
        clus
vv       BAX MUTATED BAX WILD-TYPE
  CLUS_1           1            46
  CLUS_2           0            39
  CLUS_3           0            35
  CLUS_4           0            32
  CLUS_5           2            21
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(188) Variable = IGFBP7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGFBP7 MUTATED        0      3      0      0      0
  IGFBP7 WILD-TYPE     79    123     27     43     12
D188V1, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              3              123
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFBP7 MUTATED        0      3      0      0
  IGFBP7 WILD-TYPE     71     73     34     63
D188V2, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              3               73
  CLUS_3              0               34
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGFBP7 MUTATED        0      2      0      0      0
  IGFBP7 WILD-TYPE     16     60     51     65     55
D188V3, multiclass
[1] "Remove cluster labels:" "IGFBP7 MUTATED"        
clus
  IGFBP7 MUTATED IGFBP7 WILD-TYPE 
               2              247 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4187       TCGA-BR-4188       TCGA-BR-4191       TCGA-BR-4201 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256       TCGA-BR-4257 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280       TCGA-BR-4292 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4294       TCGA-BR-4357       TCGA-BR-4361       TCGA-BR-4362 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4363       TCGA-BR-4366       TCGA-BR-4368       TCGA-BR-4369 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4370       TCGA-BR-4371       TCGA-BR-6452       TCGA-BR-6453 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6710 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7715 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8080 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8081       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8297 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8360       TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8369       TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8483       TCGA-BR-8484       TCGA-BR-8485       TCGA-BR-8486 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8588       TCGA-BR-8589       TCGA-BR-8590       TCGA-BR-8591 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8678 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8686       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A44U       TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J2 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A4J4       TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A4PD       TCGA-BR-A4PE       TCGA-BR-A4PF       TCGA-BR-A4QI 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8528       TCGA-CD-8529 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8534 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-A489       TCGA-CD-A48A       TCGA-CD-A48C       TCGA-CD-A4MG 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-A4MH       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4443 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4465 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4474       TCGA-CG-4475 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-4476       TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5723 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5734       TCGA-D7-5577 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-6525       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8573       TCGA-D7-8574 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-8575       TCGA-D7-8578       TCGA-D7-A4YT       TCGA-D7-A4YU 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY       TCGA-D7-A4Z0 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-EQ-8122       TCGA-EQ-A4SO       TCGA-F1-6177       TCGA-F1-6874 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7916       TCGA-FP-7998 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-HF-7132       TCGA-HF-7133       TCGA-HF-7136       TCGA-HJ-7597 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-HU-8602       TCGA-HU-8608       TCGA-HU-8610       TCGA-HU-A4GF 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GU       TCGA-HU-A4GX 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-HU-A4GY       TCGA-HU-A4H2       TCGA-HU-A4H3       TCGA-HU-A4H4 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-HU-A4H5       TCGA-HU-A4HD       TCGA-IN-7806       TCGA-IN-7808 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-IN-8462       TCGA-IN-8663       TCGA-IP-7968 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFBP7 MUTATED        0      1      1      0
  IGFBP7 WILD-TYPE     98     43     49     57
D188V4, multiclass
[1] "Remove cluster labels:" "IGFBP7 MUTATED"        
clus
  IGFBP7 MUTATED IGFBP7 WILD-TYPE 
               2              247 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4187       TCGA-BR-4188       TCGA-BR-4191       TCGA-BR-4201 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256       TCGA-BR-4257 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280       TCGA-BR-4292 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4294       TCGA-BR-4357       TCGA-BR-4361       TCGA-BR-4362 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4363       TCGA-BR-4366       TCGA-BR-4368       TCGA-BR-4369 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4370       TCGA-BR-4371       TCGA-BR-6452       TCGA-BR-6453 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6710 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7715 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8080 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8081       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8297 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8360       TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8369       TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8483       TCGA-BR-8484       TCGA-BR-8485       TCGA-BR-8486 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8588       TCGA-BR-8589       TCGA-BR-8590       TCGA-BR-8591 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8678 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8686       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A44U       TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J2 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A4J4       TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A4PD       TCGA-BR-A4PE       TCGA-BR-A4PF       TCGA-BR-A4QI 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8528       TCGA-CD-8529 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8534 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-A489       TCGA-CD-A48A       TCGA-CD-A48C       TCGA-CD-A4MG 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-A4MH       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4443 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4465 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4474       TCGA-CG-4475 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-4476       TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5723 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5734       TCGA-D7-5577 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-6525       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8573       TCGA-D7-8574 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-8575       TCGA-D7-8578       TCGA-D7-A4YT       TCGA-D7-A4YU 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY       TCGA-D7-A4Z0 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-EQ-8122       TCGA-EQ-A4SO       TCGA-F1-6177       TCGA-F1-6874 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7916       TCGA-FP-7998 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-HF-7132       TCGA-HF-7133       TCGA-HF-7136       TCGA-HJ-7597 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-HU-8602       TCGA-HU-8608       TCGA-HU-8610       TCGA-HU-A4GF 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GU       TCGA-HU-A4GX 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-HU-A4GY       TCGA-HU-A4H2       TCGA-HU-A4H3       TCGA-HU-A4H4 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-HU-A4H5       TCGA-HU-A4HD       TCGA-IN-7806       TCGA-IN-7808 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-IN-8462       TCGA-IN-8663       TCGA-IP-7968 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGFBP7 MUTATED        3      0      0      0      0
  IGFBP7 WILD-TYPE     59     59     40     37     59
D188V5, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              0               37
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGFBP7 MUTATED        0      0      3
  IGFBP7 WILD-TYPE    106     54     94
D188V6, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              0              106
  CLUS_2              0               54
  CLUS_3              3               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGFBP7 MUTATED        4      0      0
  IGFBP7 WILD-TYPE    119     95     71
D188V7, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              4              119
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGFBP7 MUTATED        4      0      0
  IGFBP7 WILD-TYPE    153     63     69
D188V8, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              4              153
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IGFBP7 MUTATED        1      0      1      1      0      0
  IGFBP7 WILD-TYPE     32     19     58     38     16     45
D188V9, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               19
  CLUS_3              1               58
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IGFBP7 MUTATED        2      0      1      0      0      0
  IGFBP7 WILD-TYPE     45     39     34     32     23     35
D188V10, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(189) Variable = FAM113B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM113B MUTATED        0     11      0      1      0
  FAM113B WILD-TYPE     79    115     27     42     12
D189V1, multiclass
        clus
vv       FAM113B MUTATED FAM113B WILD-TYPE
  CLUS_1               0                79
  CLUS_2              11               115
  CLUS_3               0                27
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM113B MUTATED        0      8      0      3
  FAM113B WILD-TYPE     71     68     34     60
D189V2, multiclass
        clus
vv       FAM113B MUTATED FAM113B WILD-TYPE
  CLUS_1               0                71
  CLUS_2               8                68
  CLUS_3               0                34
  CLUS_4               3                60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM113B MUTATED        1      6      1      1      2
  FAM113B WILD-TYPE     15     56     50     64     53
D189V3, multiclass
        clus
vv       FAM113B MUTATED FAM113B WILD-TYPE
  CLUS_1               1                15
  CLUS_2               6                56
  CLUS_3               1                50
  CLUS_4               1                64
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM113B MUTATED        1      4      5      1
  FAM113B WILD-TYPE     97     40     45     56
D189V4, multiclass
        clus
vv       FAM113B MUTATED FAM113B WILD-TYPE
  CLUS_1               1                97
  CLUS_2               4                40
  CLUS_3               5                45
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM113B MUTATED        8      1      0      3      0
  FAM113B WILD-TYPE     54     58     40     34     59
D189V5, multiclass
        clus
vv       FAM113B MUTATED FAM113B WILD-TYPE
  CLUS_1               8                54
  CLUS_2               1                58
  CLUS_3               0                40
  CLUS_4               3                34
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM113B MUTATED        4      1      7
  FAM113B WILD-TYPE    102     53     90
D189V6, multiclass
        clus
vv       FAM113B MUTATED FAM113B WILD-TYPE
  CLUS_1               4               102
  CLUS_2               1                53
  CLUS_3               7                90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM113B MUTATED       11      2      0
  FAM113B WILD-TYPE    112     93     71
D189V7, multiclass
        clus
vv       FAM113B MUTATED FAM113B WILD-TYPE
  CLUS_1              11               112
  CLUS_2               2                93
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM113B MUTATED       11      1      1
  FAM113B WILD-TYPE    146     62     68
D189V8, multiclass
        clus
vv       FAM113B MUTATED FAM113B WILD-TYPE
  CLUS_1              11               146
  CLUS_2               1                62
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM113B MUTATED        2      0      4      4      1      0
  FAM113B WILD-TYPE     31     19     55     35     15     45
D189V9, multiclass
        clus
vv       FAM113B MUTATED FAM113B WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                19
  CLUS_3               4                55
  CLUS_4               4                35
  CLUS_5               1                15
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM113B MUTATED        3      0      3      2      2      1
  FAM113B WILD-TYPE     44     39     32     30     21     34
D189V10, multiclass
        clus
vv       FAM113B MUTATED FAM113B WILD-TYPE
  CLUS_1               3                44
  CLUS_2               0                39
  CLUS_3               3                32
  CLUS_4               2                30
  CLUS_5               2                21
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(190) Variable = TP53BP1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53BP1 MUTATED        0     11      1      3      1
  TP53BP1 WILD-TYPE     79    115     26     40     11
D190V1, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               0                79
  CLUS_2              11               115
  CLUS_3               1                26
  CLUS_4               3                40
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53BP1 MUTATED        0      6      1      5
  TP53BP1 WILD-TYPE     71     70     33     58
D190V2, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               6                70
  CLUS_3               1                33
  CLUS_4               5                58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53BP1 MUTATED        1      6      1      3      3
  TP53BP1 WILD-TYPE     15     56     50     62     52
D190V3, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               6                56
  CLUS_3               1                50
  CLUS_4               3                62
  CLUS_5               3                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53BP1 MUTATED        3      5      4      2
  TP53BP1 WILD-TYPE     95     39     46     55
D190V4, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               3                95
  CLUS_2               5                39
  CLUS_3               4                46
  CLUS_4               2                55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53BP1 MUTATED       11      1      0      3      0
  TP53BP1 WILD-TYPE     51     58     40     34     59
D190V5, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1              11                51
  CLUS_2               1                58
  CLUS_3               0                40
  CLUS_4               3                34
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TP53BP1 MUTATED        6      1      8
  TP53BP1 WILD-TYPE    100     53     89
D190V6, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               6               100
  CLUS_2               1                53
  CLUS_3               8                89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TP53BP1 MUTATED       13      2      1
  TP53BP1 WILD-TYPE    110     93     70
D190V7, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1              13               110
  CLUS_2               2                93
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TP53BP1 MUTATED       13      3      0
  TP53BP1 WILD-TYPE    144     60     69
D190V8, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1              13               144
  CLUS_2               3                60
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TP53BP1 MUTATED        1      2      5      0      0      2
  TP53BP1 WILD-TYPE     32     17     54     39     16     43
D190V9, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               2                17
  CLUS_3               5                54
  CLUS_4               0                39
  CLUS_5               0                16
  CLUS_6               2                43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TP53BP1 MUTATED        3      1      4      1      1      0
  TP53BP1 WILD-TYPE     44     38     31     31     22     35
D190V10, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               3                44
  CLUS_2               1                38
  CLUS_3               4                31
  CLUS_4               1                31
  CLUS_5               1                22
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(191) Variable = C1R MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1R MUTATED        0      4      1      0      0
  C1R WILD-TYPE     79    122     26     43     12
D191V1, multiclass
        clus
vv       C1R MUTATED C1R WILD-TYPE
  CLUS_1           0            79
  CLUS_2           4           122
  CLUS_3           1            26
  CLUS_4           0            43
  CLUS_5           0            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1R MUTATED        0      1      2      1
  C1R WILD-TYPE     71     75     32     62
D191V2, multiclass
        clus
vv       C1R MUTATED C1R WILD-TYPE
  CLUS_1           0            71
  CLUS_2           1            75
  CLUS_3           2            32
  CLUS_4           1            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1R MUTATED        0      3      1      0      1
  C1R WILD-TYPE     16     59     50     65     54
D191V3, multiclass
        clus
vv       C1R MUTATED C1R WILD-TYPE
  CLUS_1           0            16
  CLUS_2           3            59
  CLUS_3           1            50
  CLUS_4           0            65
  CLUS_5           1            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1R MUTATED        0      3      2      0
  C1R WILD-TYPE     98     41     48     57
D191V4, multiclass
        clus
vv       C1R MUTATED C1R WILD-TYPE
  CLUS_1           0            98
  CLUS_2           3            41
  CLUS_3           2            48
  CLUS_4           0            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1R MUTATED        3      0      0      0      0
  C1R WILD-TYPE     59     59     40     37     59
D191V5, multiclass
        clus
vv       C1R MUTATED C1R WILD-TYPE
  CLUS_1           3            59
  CLUS_2           0            59
  CLUS_3           0            40
  CLUS_4           0            37
  CLUS_5           0            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  C1R MUTATED        1      0      2
  C1R WILD-TYPE    105     54     95
D191V6, multiclass
        clus
vv       C1R MUTATED C1R WILD-TYPE
  CLUS_1           1           105
  CLUS_2           0            54
  CLUS_3           2            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  C1R MUTATED        4      1      0
  C1R WILD-TYPE    119     94     71
D191V7, multiclass
        clus
vv       C1R MUTATED C1R WILD-TYPE
  CLUS_1           4           119
  CLUS_2           1            94
  CLUS_3           0            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  C1R MUTATED        3      2      0
  C1R WILD-TYPE    154     61     69
D191V8, multiclass
        clus
vv       C1R MUTATED C1R WILD-TYPE
  CLUS_1           3           154
  CLUS_2           2            61
  CLUS_3           0            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C1R MUTATED        1      0      1      0      0      1
  C1R WILD-TYPE     32     19     58     39     16     44
D191V9, multiclass
        clus
vv       C1R MUTATED C1R WILD-TYPE
  CLUS_1           1            32
  CLUS_2           0            19
  CLUS_3           1            58
  CLUS_4           0            39
  CLUS_5           0            16
  CLUS_6           1            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C1R MUTATED        1      1      1      0      0      0
  C1R WILD-TYPE     46     38     34     32     23     35
D191V10, multiclass
        clus
vv       C1R MUTATED C1R WILD-TYPE
  CLUS_1           1            46
  CLUS_2           1            38
  CLUS_3           1            34
  CLUS_4           0            32
  CLUS_5           0            23
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(192) Variable = WDR7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR7 MUTATED        0     16      0      0      0
  WDR7 WILD-TYPE     79    110     27     43     12
D192V1, multiclass
        clus
vv       WDR7 MUTATED WDR7 WILD-TYPE
  CLUS_1            0             79
  CLUS_2           16            110
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR7 MUTATED        1     10      1      2
  WDR7 WILD-TYPE     70     66     33     61
D192V2, multiclass
        clus
vv       WDR7 MUTATED WDR7 WILD-TYPE
  CLUS_1            1             70
  CLUS_2           10             66
  CLUS_3            1             33
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR7 MUTATED        1      8      6      1      0
  WDR7 WILD-TYPE     15     54     45     64     55
D192V3, multiclass
        clus
vv       WDR7 MUTATED WDR7 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            8             54
  CLUS_3            6             45
  CLUS_4            1             64
  CLUS_5            0             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR7 MUTATED        2      7      6      1
  WDR7 WILD-TYPE     96     37     44     56
D192V4, multiclass
        clus
vv       WDR7 MUTATED WDR7 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            7             37
  CLUS_3            6             44
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR7 MUTATED        6      2      2      5      0
  WDR7 WILD-TYPE     56     57     38     32     59
D192V5, multiclass
        clus
vv       WDR7 MUTATED WDR7 WILD-TYPE
  CLUS_1            6             56
  CLUS_2            2             57
  CLUS_3            2             38
  CLUS_4            5             32
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WDR7 MUTATED        2      3     10
  WDR7 WILD-TYPE    104     51     87
D192V6, multiclass
        clus
vv       WDR7 MUTATED WDR7 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            3             51
  CLUS_3           10             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WDR7 MUTATED       13      4      0
  WDR7 WILD-TYPE    110     91     71
D192V7, multiclass
        clus
vv       WDR7 MUTATED WDR7 WILD-TYPE
  CLUS_1           13            110
  CLUS_2            4             91
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WDR7 MUTATED       13      4      0
  WDR7 WILD-TYPE    144     59     69
D192V8, multiclass
        clus
vv       WDR7 MUTATED WDR7 WILD-TYPE
  CLUS_1           13            144
  CLUS_2            4             59
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WDR7 MUTATED        2      3      7      1      0      1
  WDR7 WILD-TYPE     31     16     52     38     16     44
D192V9, multiclass
        clus
vv       WDR7 MUTATED WDR7 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            3             16
  CLUS_3            7             52
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WDR7 MUTATED        5      1      6      1      1      0
  WDR7 WILD-TYPE     42     38     29     31     22     35
D192V10, multiclass
        clus
vv       WDR7 MUTATED WDR7 WILD-TYPE
  CLUS_1            5             42
  CLUS_2            1             38
  CLUS_3            6             29
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(193) Variable = ERBB3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB3 MUTATED        3     21      1      4      2
  ERBB3 WILD-TYPE     76    105     26     39     10
D193V1, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             3              76
  CLUS_2            21             105
  CLUS_3             1              26
  CLUS_4             4              39
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB3 MUTATED        3     11      5      4
  ERBB3 WILD-TYPE     68     65     29     59
D193V2, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             3              68
  CLUS_2            11              65
  CLUS_3             5              29
  CLUS_4             4              59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB3 MUTATED        2      8      4      2     10
  ERBB3 WILD-TYPE     14     54     47     63     45
D193V3, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             8              54
  CLUS_3             4              47
  CLUS_4             2              63
  CLUS_5            10              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB3 MUTATED        6     11      5      4
  ERBB3 WILD-TYPE     92     33     45     53
D193V4, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             6              92
  CLUS_2            11              33
  CLUS_3             5              45
  CLUS_4             4              53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB3 MUTATED       10      7      3      3      4
  ERBB3 WILD-TYPE     52     52     37     34     55
D193V5, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1            10              52
  CLUS_2             7              52
  CLUS_3             3              37
  CLUS_4             3              34
  CLUS_5             4              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB3 MUTATED       11      3     13
  ERBB3 WILD-TYPE     95     51     84
D193V6, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1            11              95
  CLUS_2             3              51
  CLUS_3            13              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB3 MUTATED       19      6      6
  ERBB3 WILD-TYPE    104     89     65
D193V7, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1            19             104
  CLUS_2             6              89
  CLUS_3             6              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB3 MUTATED       20      5      6
  ERBB3 WILD-TYPE    137     58     63
D193V8, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1            20             137
  CLUS_2             5              58
  CLUS_3             6              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERBB3 MUTATED        1      3      6      7      2      2
  ERBB3 WILD-TYPE     32     16     53     32     14     43
D193V9, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             3              16
  CLUS_3             6              53
  CLUS_4             7              32
  CLUS_5             2              14
  CLUS_6             2              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERBB3 MUTATED        4      1      4      4      5      3
  ERBB3 WILD-TYPE     43     38     31     28     18     32
D193V10, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             1              38
  CLUS_3             4              31
  CLUS_4             4              28
  CLUS_5             5              18
  CLUS_6             3              32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(194) Variable = CASP8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASP8 MUTATED        1     16      1      0      0
  CASP8 WILD-TYPE     78    110     26     43     12
D194V1, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             1              78
  CLUS_2            16             110
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP8 MUTATED        1      8      2      2
  CASP8 WILD-TYPE     70     68     32     61
D194V2, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             8              68
  CLUS_3             2              32
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASP8 MUTATED        0      3      5      2      6
  CASP8 WILD-TYPE     16     59     46     63     49
D194V3, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              59
  CLUS_3             5              46
  CLUS_4             2              63
  CLUS_5             6              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP8 MUTATED        4      7      2      3
  CASP8 WILD-TYPE     94     37     48     54
D194V4, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             4              94
  CLUS_2             7              37
  CLUS_3             2              48
  CLUS_4             3              54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASP8 MUTATED        8      3      3      3      1
  CASP8 WILD-TYPE     54     56     37     34     58
D194V5, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             8              54
  CLUS_2             3              56
  CLUS_3             3              37
  CLUS_4             3              34
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED        4      3     11
  CASP8 WILD-TYPE    102     51     86
D194V6, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             3              51
  CLUS_3            11              86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED       12      3      3
  CASP8 WILD-TYPE    111     92     68
D194V7, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1            12             111
  CLUS_2             3              92
  CLUS_3             3              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED       13      2      3
  CASP8 WILD-TYPE    144     61     66
D194V8, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1            13             144
  CLUS_2             2              61
  CLUS_3             3              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CASP8 MUTATED        0      4      4      2      1      1
  CASP8 WILD-TYPE     33     15     55     37     15     44
D194V9, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             4              15
  CLUS_3             4              55
  CLUS_4             2              37
  CLUS_5             1              15
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CASP8 MUTATED        4      1      3      2      1      1
  CASP8 WILD-TYPE     43     38     32     30     22     34
D194V10, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             2              30
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(195) Variable = PRKAB1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRKAB1 MUTATED        2      2      1      1      0
  PRKAB1 WILD-TYPE     77    124     26     42     12
D195V1, multiclass
        clus
vv       PRKAB1 MUTATED PRKAB1 WILD-TYPE
  CLUS_1              2               77
  CLUS_2              2              124
  CLUS_3              1               26
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKAB1 MUTATED        2      1      1      0
  PRKAB1 WILD-TYPE     69     75     33     63
D195V2, multiclass
        clus
vv       PRKAB1 MUTATED PRKAB1 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              1               75
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRKAB1 MUTATED        0      1      3      1      1
  PRKAB1 WILD-TYPE     16     61     48     64     54
D195V3, multiclass
        clus
vv       PRKAB1 MUTATED PRKAB1 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              1               61
  CLUS_3              3               48
  CLUS_4              1               64
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKAB1 MUTATED        1      2      1      2
  PRKAB1 WILD-TYPE     97     42     49     55
D195V4, multiclass
        clus
vv       PRKAB1 MUTATED PRKAB1 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              2               42
  CLUS_3              1               49
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRKAB1 MUTATED        1      1      1      0      2
  PRKAB1 WILD-TYPE     61     58     39     37     57
D195V5, multiclass
        clus
vv       PRKAB1 MUTATED PRKAB1 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              0               37
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRKAB1 MUTATED        3      0      2
  PRKAB1 WILD-TYPE    103     54     95
D195V6, multiclass
        clus
vv       PRKAB1 MUTATED PRKAB1 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              0               54
  CLUS_3              2               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRKAB1 MUTATED        2      3      1
  PRKAB1 WILD-TYPE    121     92     70
D195V7, multiclass
        clus
vv       PRKAB1 MUTATED PRKAB1 WILD-TYPE
  CLUS_1              2              121
  CLUS_2              3               92
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRKAB1 MUTATED        3      1      2
  PRKAB1 WILD-TYPE    154     62     67
D195V8, multiclass
        clus
vv       PRKAB1 MUTATED PRKAB1 WILD-TYPE
  CLUS_1              3              154
  CLUS_2              1               62
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRKAB1 MUTATED        1      0      0      1      0      2
  PRKAB1 WILD-TYPE     32     19     59     38     16     43
D195V9, multiclass
        clus
vv       PRKAB1 MUTATED PRKAB1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               19
  CLUS_3              0               59
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              2               43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRKAB1 MUTATED        0      1      0      0      1      2
  PRKAB1 WILD-TYPE     47     38     35     32     22     33
D195V10, multiclass
        clus
vv       PRKAB1 MUTATED PRKAB1 WILD-TYPE
  CLUS_1              0               47
  CLUS_2              1               38
  CLUS_3              0               35
  CLUS_4              0               32
  CLUS_5              1               22
  CLUS_6              2               33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(196) Variable = PIGB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGB MUTATED        0      8      1      1      0
  PIGB WILD-TYPE     79    118     26     42     12
D196V1, multiclass
        clus
vv       PIGB MUTATED PIGB WILD-TYPE
  CLUS_1            0             79
  CLUS_2            8            118
  CLUS_3            1             26
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGB MUTATED        0      3      3      1
  PIGB WILD-TYPE     71     73     31     62
D196V2, multiclass
        clus
vv       PIGB MUTATED PIGB WILD-TYPE
  CLUS_1            0             71
  CLUS_2            3             73
  CLUS_3            3             31
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGB MUTATED        1      4      2      0      1
  PIGB WILD-TYPE     15     58     49     65     54
D196V3, multiclass
        clus
vv       PIGB MUTATED PIGB WILD-TYPE
  CLUS_1            1             15
  CLUS_2            4             58
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGB MUTATED        2      5      1      0
  PIGB WILD-TYPE     96     39     49     57
D196V4, multiclass
        clus
vv       PIGB MUTATED PIGB WILD-TYPE
  CLUS_1            2             96
  CLUS_2            5             39
  CLUS_3            1             49
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGB MUTATED        6      1      2      0      0
  PIGB WILD-TYPE     56     58     38     37     59
D196V5, multiclass
        clus
vv       PIGB MUTATED PIGB WILD-TYPE
  CLUS_1            6             56
  CLUS_2            1             58
  CLUS_3            2             38
  CLUS_4            0             37
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGB MUTATED        4      0      5
  PIGB WILD-TYPE    102     54     92
D196V6, multiclass
        clus
vv       PIGB MUTATED PIGB WILD-TYPE
  CLUS_1            4            102
  CLUS_2            0             54
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGB MUTATED        9      1      0
  PIGB WILD-TYPE    114     94     71
D196V7, multiclass
        clus
vv       PIGB MUTATED PIGB WILD-TYPE
  CLUS_1            9            114
  CLUS_2            1             94
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGB MUTATED        9      1      0
  PIGB WILD-TYPE    148     62     69
D196V8, multiclass
        clus
vv       PIGB MUTATED PIGB WILD-TYPE
  CLUS_1            9            148
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIGB MUTATED        0      0      2      3      0      1
  PIGB WILD-TYPE     33     19     57     36     16     44
D196V9, multiclass
        clus
vv       PIGB MUTATED PIGB WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             19
  CLUS_3            2             57
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIGB MUTATED        1      1      2      2      0      0
  PIGB WILD-TYPE     46     38     33     30     23     35
D196V10, multiclass
        clus
vv       PIGB MUTATED PIGB WILD-TYPE
  CLUS_1            1             46
  CLUS_2            1             38
  CLUS_3            2             33
  CLUS_4            2             30
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(197) Variable = NAA25 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAA25 MUTATED        3      8      0      2      1
  NAA25 WILD-TYPE     76    118     27     41     11
D197V1, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             3              76
  CLUS_2             8             118
  CLUS_3             0              27
  CLUS_4             2              41
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA25 MUTATED        3      9      2      0
  NAA25 WILD-TYPE     68     67     32     63
D197V2, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             9              67
  CLUS_3             2              32
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAA25 MUTATED        0      6      5      1      2
  NAA25 WILD-TYPE     16     56     46     64     53
D197V3, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             6              56
  CLUS_3             5              46
  CLUS_4             1              64
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA25 MUTATED        4      3      6      1
  NAA25 WILD-TYPE     94     41     44     56
D197V4, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             4              94
  CLUS_2             3              41
  CLUS_3             6              44
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAA25 MUTATED        4      3      1      2      3
  NAA25 WILD-TYPE     58     56     39     35     56
D197V5, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             3              56
  CLUS_3             1              39
  CLUS_4             2              35
  CLUS_5             3              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA25 MUTATED        5      3      5
  NAA25 WILD-TYPE    101     51     92
D197V6, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             5             101
  CLUS_2             3              51
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA25 MUTATED        6      5      3
  NAA25 WILD-TYPE    117     90     68
D197V7, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             5              90
  CLUS_3             3              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA25 MUTATED        9      3      2
  NAA25 WILD-TYPE    148     60     67
D197V8, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             9             148
  CLUS_2             3              60
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NAA25 MUTATED        1      1      4      2      0      3
  NAA25 WILD-TYPE     32     18     55     37     16     42
D197V9, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             4              55
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             3              42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NAA25 MUTATED        2      1      2      1      4      1
  NAA25 WILD-TYPE     45     38     33     31     19     34
D197V10, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              38
  CLUS_3             2              33
  CLUS_4             1              31
  CLUS_5             4              19
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(198) Variable = HNF1B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNF1B MUTATED        0      5      1      0      0
  HNF1B WILD-TYPE     79    121     26     43     12
D198V1, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             0              79
  CLUS_2             5             121
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNF1B MUTATED        0      2      3      0
  HNF1B WILD-TYPE     71     74     31     63
D198V2, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             0              71
  CLUS_2             2              74
  CLUS_3             3              31
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNF1B MUTATED        0      1      0      1      3
  HNF1B WILD-TYPE     16     61     51     64     52
D198V3, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              61
  CLUS_3             0              51
  CLUS_4             1              64
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNF1B MUTATED        0      4      0      1
  HNF1B WILD-TYPE     98     40     50     56
D198V4, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             0              98
  CLUS_2             4              40
  CLUS_3             0              50
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNF1B MUTATED        4      0      0      1      0
  HNF1B WILD-TYPE     58     59     40     36     59
D198V5, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HNF1B MUTATED        2      0      3
  HNF1B WILD-TYPE    104     54     94
D198V6, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HNF1B MUTATED        5      0      1
  HNF1B WILD-TYPE    118     95     70
D198V7, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             5             118
  CLUS_2             0              95
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HNF1B MUTATED        6      0      0
  HNF1B WILD-TYPE    151     63     69
D198V8, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             6             151
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HNF1B MUTATED        1      1      1      1      1      0
  HNF1B WILD-TYPE     32     18     58     38     15     45
D198V9, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             1              58
  CLUS_4             1              38
  CLUS_5             1              15
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HNF1B MUTATED        2      0      1      1      1      0
  HNF1B WILD-TYPE     45     39     34     31     22     35
D198V10, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(199) Variable = GLIPR1L2 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLIPR1L2 MUTATED        1      6      2      0      0
  GLIPR1L2 WILD-TYPE     78    120     25     43     12
D199V1, multiclass
        clus
vv       GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE
  CLUS_1                1                 78
  CLUS_2                6                120
  CLUS_3                2                 25
  CLUS_4                0                 43
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLIPR1L2 MUTATED        1      4      2      1
  GLIPR1L2 WILD-TYPE     70     72     32     62
D199V2, multiclass
        clus
vv       GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE
  CLUS_1                1                 70
  CLUS_2                4                 72
  CLUS_3                2                 32
  CLUS_4                1                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLIPR1L2 MUTATED        0      2      3      1      3
  GLIPR1L2 WILD-TYPE     16     60     48     64     52
D199V3, multiclass
        clus
vv       GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                2                 60
  CLUS_3                3                 48
  CLUS_4                1                 64
  CLUS_5                3                 52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLIPR1L2 MUTATED        3      4      1      1
  GLIPR1L2 WILD-TYPE     95     40     49     56
D199V4, multiclass
        clus
vv       GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE
  CLUS_1                3                 95
  CLUS_2                4                 40
  CLUS_3                1                 49
  CLUS_4                1                 56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLIPR1L2 MUTATED        5      0      1      2      0
  GLIPR1L2 WILD-TYPE     57     59     39     35     59
D199V5, multiclass
        clus
vv       GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE
  CLUS_1                5                 57
  CLUS_2                0                 59
  CLUS_3                1                 39
  CLUS_4                2                 35
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  GLIPR1L2 MUTATED        3      0      5
  GLIPR1L2 WILD-TYPE    103     54     92
D199V6, multiclass
        clus
vv       GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE
  CLUS_1                3                103
  CLUS_2                0                 54
  CLUS_3                5                 92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  GLIPR1L2 MUTATED        7      2      1
  GLIPR1L2 WILD-TYPE    116     93     70
D199V7, multiclass
        clus
vv       GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE
  CLUS_1                7                116
  CLUS_2                2                 93
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  GLIPR1L2 MUTATED        8      1      1
  GLIPR1L2 WILD-TYPE    149     62     68
D199V8, multiclass
        clus
vv       GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE
  CLUS_1                8                149
  CLUS_2                1                 62
  CLUS_3                1                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GLIPR1L2 MUTATED        2      0      4      1      0      1
  GLIPR1L2 WILD-TYPE     31     19     55     38     16     44
D199V9, multiclass
        clus
vv       GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                0                 19
  CLUS_3                4                 55
  CLUS_4                1                 38
  CLUS_5                0                 16
  CLUS_6                1                 44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GLIPR1L2 MUTATED        4      1      3      0      0      0
  GLIPR1L2 WILD-TYPE     43     38     32     32     23     35
D199V10, multiclass
        clus
vv       GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE
  CLUS_1                4                 43
  CLUS_2                1                 38
  CLUS_3                3                 32
  CLUS_4                0                 32
  CLUS_5                0                 23
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(200) Variable = CR1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR1 MUTATED        2     19      1      1      2
  CR1 WILD-TYPE     77    107     26     42     10
D200V1, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1           2            77
  CLUS_2          19           107
  CLUS_3           1            26
  CLUS_4           1            42
  CLUS_5           2            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CR1 MUTATED        2      9      5      3
  CR1 WILD-TYPE     69     67     29     60
D200V2, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1           2            69
  CLUS_2           9            67
  CLUS_3           5            29
  CLUS_4           3            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR1 MUTATED        1     10      4      1      6
  CR1 WILD-TYPE     15     52     47     64     49
D200V3, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1           1            15
  CLUS_2          10            52
  CLUS_3           4            47
  CLUS_4           1            64
  CLUS_5           6            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CR1 MUTATED        5      9      6      2
  CR1 WILD-TYPE     93     35     44     55
D200V4, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1           5            93
  CLUS_2           9            35
  CLUS_3           6            44
  CLUS_4           2            55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR1 MUTATED       15      1      3      5      0
  CR1 WILD-TYPE     47     58     37     32     59
D200V5, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1          15            47
  CLUS_2           1            58
  CLUS_3           3            37
  CLUS_4           5            32
  CLUS_5           0            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CR1 MUTATED        3      2     19
  CR1 WILD-TYPE    103     52     78
D200V6, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1           3           103
  CLUS_2           2            52
  CLUS_3          19            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CR1 MUTATED       22      3      0
  CR1 WILD-TYPE    101     92     71
D200V7, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1          22           101
  CLUS_2           3            92
  CLUS_3           0            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CR1 MUTATED       22      2      1
  CR1 WILD-TYPE    135     61     68
D200V8, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1          22           135
  CLUS_2           2            61
  CLUS_3           1            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CR1 MUTATED        0      2      7      6      0      1
  CR1 WILD-TYPE     33     17     52     33     16     44
D200V9, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1           0            33
  CLUS_2           2            17
  CLUS_3           7            52
  CLUS_4           6            33
  CLUS_5           0            16
  CLUS_6           1            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CR1 MUTATED        4      1      4      3      4      0
  CR1 WILD-TYPE     43     38     31     29     19     35
D200V10, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1           4            43
  CLUS_2           1            38
  CLUS_3           4            31
  CLUS_4           3            29
  CLUS_5           4            19
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(201) Variable = TENC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TENC1 MUTATED        1      7      1      1      1
  TENC1 WILD-TYPE     78    119     26     42     11
D201V1, multiclass
        clus
vv       TENC1 MUTATED TENC1 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             7             119
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TENC1 MUTATED        2      4      2      2
  TENC1 WILD-TYPE     69     72     32     61
D201V2, multiclass
        clus
vv       TENC1 MUTATED TENC1 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             4              72
  CLUS_3             2              32
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TENC1 MUTATED        1      4      2      1      2
  TENC1 WILD-TYPE     15     58     49     64     53
D201V3, multiclass
        clus
vv       TENC1 MUTATED TENC1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             4              58
  CLUS_3             2              49
  CLUS_4             1              64
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TENC1 MUTATED        2      3      4      1
  TENC1 WILD-TYPE     96     41     46     56
D201V4, multiclass
        clus
vv       TENC1 MUTATED TENC1 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             3              41
  CLUS_3             4              46
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TENC1 MUTATED        4      3      1      1      1
  TENC1 WILD-TYPE     58     56     39     36     58
D201V5, multiclass
        clus
vv       TENC1 MUTATED TENC1 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             3              56
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TENC1 MUTATED        4      2      4
  TENC1 WILD-TYPE    102     52     93
D201V6, multiclass
        clus
vv       TENC1 MUTATED TENC1 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             2              52
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TENC1 MUTATED        7      1      3
  TENC1 WILD-TYPE    116     94     68
D201V7, multiclass
        clus
vv       TENC1 MUTATED TENC1 WILD-TYPE
  CLUS_1             7             116
  CLUS_2             1              94
  CLUS_3             3              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TENC1 MUTATED        8      0      3
  TENC1 WILD-TYPE    149     63     66
D201V8, multiclass
        clus
vv       TENC1 MUTATED TENC1 WILD-TYPE
  CLUS_1             8             149
  CLUS_2             0              63
  CLUS_3             3              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TENC1 MUTATED        0      3      4      0      0      1
  TENC1 WILD-TYPE     33     16     55     39     16     44
D201V9, multiclass
        clus
vv       TENC1 MUTATED TENC1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             3              16
  CLUS_3             4              55
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TENC1 MUTATED        3      1      3      1      0      0
  TENC1 WILD-TYPE     44     38     32     31     23     35
D201V10, multiclass
        clus
vv       TENC1 MUTATED TENC1 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(202) Variable = ZIM3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZIM3 MUTATED        1      7      1      1      0
  ZIM3 WILD-TYPE     78    119     26     42     12
D202V1, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            1             78
  CLUS_2            7            119
  CLUS_3            1             26
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZIM3 MUTATED        1      2      0      3
  ZIM3 WILD-TYPE     70     74     34     60
D202V2, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            2             74
  CLUS_3            0             34
  CLUS_4            3             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZIM3 MUTATED        1      5      1      2      0
  ZIM3 WILD-TYPE     15     57     50     63     55
D202V3, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            5             57
  CLUS_3            1             50
  CLUS_4            2             63
  CLUS_5            0             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZIM3 MUTATED        2      3      2      2
  ZIM3 WILD-TYPE     96     41     48     55
D202V4, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            3             41
  CLUS_3            2             48
  CLUS_4            2             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZIM3 MUTATED        3      3      1      1      1
  ZIM3 WILD-TYPE     59     56     39     36     58
D202V5, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            3             59
  CLUS_2            3             56
  CLUS_3            1             39
  CLUS_4            1             36
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZIM3 MUTATED        3      1      5
  ZIM3 WILD-TYPE    103     53     92
D202V6, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            3            103
  CLUS_2            1             53
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZIM3 MUTATED        7      2      1
  ZIM3 WILD-TYPE    116     93     70
D202V7, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            7            116
  CLUS_2            2             93
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZIM3 MUTATED        7      1      2
  ZIM3 WILD-TYPE    150     62     67
D202V8, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            7            150
  CLUS_2            1             62
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZIM3 MUTATED        1      0      4      0      1      0
  ZIM3 WILD-TYPE     32     19     55     39     15     45
D202V9, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             19
  CLUS_3            4             55
  CLUS_4            0             39
  CLUS_5            1             15
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZIM3 MUTATED        1      0      3      0      1      1
  ZIM3 WILD-TYPE     46     39     32     32     22     34
D202V10, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            1             46
  CLUS_2            0             39
  CLUS_3            3             32
  CLUS_4            0             32
  CLUS_5            1             22
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(203) Variable = RABGAP1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RABGAP1 MUTATED        0     15      1      1      2
  RABGAP1 WILD-TYPE     79    111     26     42     10
D203V1, multiclass
        clus
vv       RABGAP1 MUTATED RABGAP1 WILD-TYPE
  CLUS_1               0                79
  CLUS_2              15               111
  CLUS_3               1                26
  CLUS_4               1                42
  CLUS_5               2                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RABGAP1 MUTATED        0     15      2      0
  RABGAP1 WILD-TYPE     71     61     32     63
D203V2, multiclass
        clus
vv       RABGAP1 MUTATED RABGAP1 WILD-TYPE
  CLUS_1               0                71
  CLUS_2              15                61
  CLUS_3               2                32
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RABGAP1 MUTATED        0      9      4      0      3
  RABGAP1 WILD-TYPE     16     53     47     65     52
D203V3, multiclass
        clus
vv       RABGAP1 MUTATED RABGAP1 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               9                53
  CLUS_3               4                47
  CLUS_4               0                65
  CLUS_5               3                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RABGAP1 MUTATED        3      9      4      0
  RABGAP1 WILD-TYPE     95     35     46     57
D203V4, multiclass
        clus
vv       RABGAP1 MUTATED RABGAP1 WILD-TYPE
  CLUS_1               3                95
  CLUS_2               9                35
  CLUS_3               4                46
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RABGAP1 MUTATED       12      0      0      3      0
  RABGAP1 WILD-TYPE     50     59     40     34     59
D203V5, multiclass
        clus
vv       RABGAP1 MUTATED RABGAP1 WILD-TYPE
  CLUS_1              12                50
  CLUS_2               0                59
  CLUS_3               0                40
  CLUS_4               3                34
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RABGAP1 MUTATED        0      1     14
  RABGAP1 WILD-TYPE    106     53     83
D203V6, multiclass
        clus
vv       RABGAP1 MUTATED RABGAP1 WILD-TYPE
  CLUS_1               0               106
  CLUS_2               1                53
  CLUS_3              14                83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RABGAP1 MUTATED       17      3      0
  RABGAP1 WILD-TYPE    106     92     71
D203V7, multiclass
        clus
vv       RABGAP1 MUTATED RABGAP1 WILD-TYPE
  CLUS_1              17               106
  CLUS_2               3                92
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RABGAP1 MUTATED       18      2      0
  RABGAP1 WILD-TYPE    139     61     69
D203V8, multiclass
        clus
vv       RABGAP1 MUTATED RABGAP1 WILD-TYPE
  CLUS_1              18               139
  CLUS_2               2                61
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RABGAP1 MUTATED        5      1      4      5      0      1
  RABGAP1 WILD-TYPE     28     18     55     34     16     44
D203V9, multiclass
        clus
vv       RABGAP1 MUTATED RABGAP1 WILD-TYPE
  CLUS_1               5                28
  CLUS_2               1                18
  CLUS_3               4                55
  CLUS_4               5                34
  CLUS_5               0                16
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RABGAP1 MUTATED        8      1      3      2      2      0
  RABGAP1 WILD-TYPE     39     38     32     30     21     35
D203V10, multiclass
        clus
vv       RABGAP1 MUTATED RABGAP1 WILD-TYPE
  CLUS_1               8                39
  CLUS_2               1                38
  CLUS_3               3                32
  CLUS_4               2                30
  CLUS_5               2                21
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(204) Variable = ALPK2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALPK2 MUTATED        0     17      1      0      1
  ALPK2 WILD-TYPE     79    109     26     43     11
D204V1, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             0              79
  CLUS_2            17             109
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALPK2 MUTATED        1      9      1      3
  ALPK2 WILD-TYPE     70     67     33     60
D204V2, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             9              67
  CLUS_3             1              33
  CLUS_4             3              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALPK2 MUTATED        1      5      3      2      3
  ALPK2 WILD-TYPE     15     57     48     63     52
D204V3, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             5              57
  CLUS_3             3              48
  CLUS_4             2              63
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALPK2 MUTATED        3      7      3      1
  ALPK2 WILD-TYPE     95     37     47     56
D204V4, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             7              37
  CLUS_3             3              47
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALPK2 MUTATED        8      3      3      3      0
  ALPK2 WILD-TYPE     54     56     37     34     59
D204V5, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             8              54
  CLUS_2             3              56
  CLUS_3             3              37
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALPK2 MUTATED        2      2     13
  ALPK2 WILD-TYPE    104     52     84
D204V6, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             2              52
  CLUS_3            13              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALPK2 MUTATED       15      3      1
  ALPK2 WILD-TYPE    108     92     70
D204V7, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1            15             108
  CLUS_2             3              92
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALPK2 MUTATED       17      2      0
  ALPK2 WILD-TYPE    140     61     69
D204V8, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1            17             140
  CLUS_2             2              61
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ALPK2 MUTATED        0      4      2      5      0      1
  ALPK2 WILD-TYPE     33     15     57     34     16     44
D204V9, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             4              15
  CLUS_3             2              57
  CLUS_4             5              34
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ALPK2 MUTATED        6      1      2      1      2      0
  ALPK2 WILD-TYPE     41     38     33     31     21     35
D204V10, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             6              41
  CLUS_2             1              38
  CLUS_3             2              33
  CLUS_4             1              31
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(205) Variable = RAD51AP2 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAD51AP2 MUTATED        2      9      0      1      0
  RAD51AP2 WILD-TYPE     77    117     27     42     12
D205V1, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                2                 77
  CLUS_2                9                117
  CLUS_3                0                 27
  CLUS_4                1                 42
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD51AP2 MUTATED        2      5      1      2
  RAD51AP2 WILD-TYPE     69     71     33     61
D205V2, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                2                 69
  CLUS_2                5                 71
  CLUS_3                1                 33
  CLUS_4                2                 61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAD51AP2 MUTATED        1      3      3      0      3
  RAD51AP2 WILD-TYPE     15     59     48     65     52
D205V3, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                3                 59
  CLUS_3                3                 48
  CLUS_4                0                 65
  CLUS_5                3                 52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD51AP2 MUTATED        5      4      1      0
  RAD51AP2 WILD-TYPE     93     40     49     57
D205V4, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                5                 93
  CLUS_2                4                 40
  CLUS_3                1                 49
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAD51AP2 MUTATED        5      1      1      2      1
  RAD51AP2 WILD-TYPE     57     58     39     35     58
D205V5, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                5                 57
  CLUS_2                1                 58
  CLUS_3                1                 39
  CLUS_4                2                 35
  CLUS_5                1                 58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  RAD51AP2 MUTATED        3      0      7
  RAD51AP2 WILD-TYPE    103     54     90
D205V6, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                3                103
  CLUS_2                0                 54
  CLUS_3                7                 90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  RAD51AP2 MUTATED        9      0      3
  RAD51AP2 WILD-TYPE    114     95     68
D205V7, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                9                114
  CLUS_2                0                 95
  CLUS_3                3                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  RAD51AP2 MUTATED        9      0      3
  RAD51AP2 WILD-TYPE    148     63     66
D205V8, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                9                148
  CLUS_2                0                 63
  CLUS_3                3                 66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RAD51AP2 MUTATED        2      1      1      4      0      0
  RAD51AP2 WILD-TYPE     31     18     58     35     16     45
D205V9, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                1                 18
  CLUS_3                1                 58
  CLUS_4                4                 35
  CLUS_5                0                 16
  CLUS_6                0                 45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RAD51AP2 MUTATED        3      0      1      2      1      1
  RAD51AP2 WILD-TYPE     44     39     34     30     22     34
D205V10, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                3                 44
  CLUS_2                0                 39
  CLUS_3                1                 34
  CLUS_4                2                 30
  CLUS_5                1                 22
  CLUS_6                1                 34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(206) Variable = DNAJC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAJC1 MUTATED        0     10      1      0      0
  DNAJC1 WILD-TYPE     79    116     26     43     12
D206V1, multiclass
        clus
vv       DNAJC1 MUTATED DNAJC1 WILD-TYPE
  CLUS_1              0               79
  CLUS_2             10              116
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC1 MUTATED        0      7      2      1
  DNAJC1 WILD-TYPE     71     69     32     62
D206V2, multiclass
        clus
vv       DNAJC1 MUTATED DNAJC1 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              7               69
  CLUS_3              2               32
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAJC1 MUTATED        1      3      3      0      2
  DNAJC1 WILD-TYPE     15     59     48     65     53
D206V3, multiclass
        clus
vv       DNAJC1 MUTATED DNAJC1 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              3               59
  CLUS_3              3               48
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC1 MUTATED        2      4      3      0
  DNAJC1 WILD-TYPE     96     40     47     57
D206V4, multiclass
        clus
vv       DNAJC1 MUTATED DNAJC1 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              4               40
  CLUS_3              3               47
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAJC1 MUTATED        7      1      0      2      0
  DNAJC1 WILD-TYPE     55     58     40     35     59
D206V5, multiclass
        clus
vv       DNAJC1 MUTATED DNAJC1 WILD-TYPE
  CLUS_1              7               55
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              2               35
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAJC1 MUTATED        1      1      8
  DNAJC1 WILD-TYPE    105     53     89
D206V6, multiclass
        clus
vv       DNAJC1 MUTATED DNAJC1 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              1               53
  CLUS_3              8               89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAJC1 MUTATED        8      3      0
  DNAJC1 WILD-TYPE    115     92     71
D206V7, multiclass
        clus
vv       DNAJC1 MUTATED DNAJC1 WILD-TYPE
  CLUS_1              8              115
  CLUS_2              3               92
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAJC1 MUTATED        9      2      0
  DNAJC1 WILD-TYPE    148     61     69
D206V8, multiclass
        clus
vv       DNAJC1 MUTATED DNAJC1 WILD-TYPE
  CLUS_1              9              148
  CLUS_2              2               61
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DNAJC1 MUTATED        1      1      4      2      0      2
  DNAJC1 WILD-TYPE     32     18     55     37     16     43
D206V9, multiclass
        clus
vv       DNAJC1 MUTATED DNAJC1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              4               55
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              2               43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DNAJC1 MUTATED        3      2      3      1      1      0
  DNAJC1 WILD-TYPE     44     37     32     31     22     35
D206V10, multiclass
        clus
vv       DNAJC1 MUTATED DNAJC1 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              2               37
  CLUS_3              3               32
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(207) Variable = SLC16A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC16A1 MUTATED        1      5      0      0      0
  SLC16A1 WILD-TYPE     78    121     27     43     12
D207V1, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               1                78
  CLUS_2               5               121
  CLUS_3               0                27
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A1 MUTATED        1      2      1      1
  SLC16A1 WILD-TYPE     70     74     33     62
D207V2, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               2                74
  CLUS_3               1                33
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC16A1 MUTATED        1      2      0      0      2
  SLC16A1 WILD-TYPE     15     60     51     65     53
D207V3, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               2                60
  CLUS_3               0                51
  CLUS_4               0                65
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC16A1 MUTATED        2      1      2      0
  SLC16A1 WILD-TYPE     96     43     48     57
D207V4, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               2                96
  CLUS_2               1                43
  CLUS_3               2                48
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC16A1 MUTATED        4      0      1      1      1
  SLC16A1 WILD-TYPE     58     59     39     36     58
D207V5, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               4                58
  CLUS_2               0                59
  CLUS_3               1                39
  CLUS_4               1                36
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A1 MUTATED        2      0      5
  SLC16A1 WILD-TYPE    104     54     92
D207V6, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               2               104
  CLUS_2               0                54
  CLUS_3               5                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A1 MUTATED        6      0      1
  SLC16A1 WILD-TYPE    117     95     70
D207V7, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               6               117
  CLUS_2               0                95
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC16A1 MUTATED        5      0      2
  SLC16A1 WILD-TYPE    152     63     67
D207V8, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               5               152
  CLUS_2               0                63
  CLUS_3               2                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC16A1 MUTATED        2      0      2      1      0      0
  SLC16A1 WILD-TYPE     31     19     57     38     16     45
D207V9, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                19
  CLUS_3               2                57
  CLUS_4               1                38
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC16A1 MUTATED        2      0      2      1      0      0
  SLC16A1 WILD-TYPE     45     39     33     31     23     35
D207V10, multiclass
        clus
vv       SLC16A1 MUTATED SLC16A1 WILD-TYPE
  CLUS_1               2                45
  CLUS_2               0                39
  CLUS_3               2                33
  CLUS_4               1                31
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(208) Variable = GPR160 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR160 MUTATED        0      7      0      1      0
  GPR160 WILD-TYPE     79    119     27     42     12
D208V1, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              7              119
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR160 MUTATED        1      4      0      0
  GPR160 WILD-TYPE     70     72     34     63
D208V2, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              4               72
  CLUS_3              0               34
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR160 MUTATED        0      3      3      1      1
  GPR160 WILD-TYPE     16     59     48     64     54
D208V3, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              3               59
  CLUS_3              3               48
  CLUS_4              1               64
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR160 MUTATED        0      5      3      0
  GPR160 WILD-TYPE     98     39     47     57
D208V4, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              5               39
  CLUS_3              3               47
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR160 MUTATED        2      2      2      0      0
  GPR160 WILD-TYPE     60     57     38     37     59
D208V5, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              2               57
  CLUS_3              2               38
  CLUS_4              0               37
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR160 MUTATED        1      1      4
  GPR160 WILD-TYPE    105     53     93
D208V6, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              1               53
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR160 MUTATED        6      2      0
  GPR160 WILD-TYPE    117     93     71
D208V7, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              6              117
  CLUS_2              2               93
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR160 MUTATED        6      1      1
  GPR160 WILD-TYPE    151     62     68
D208V8, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              6              151
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR160 MUTATED        1      1      2      0      0      1
  GPR160 WILD-TYPE     32     18     57     39     16     44
D208V9, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR160 MUTATED        1      1      2      1      0      0
  GPR160 WILD-TYPE     46     38     33     31     23     35
D208V10, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              1               38
  CLUS_3              2               33
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(209) Variable = DDX60 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX60 MUTATED        0      9      0      0      1
  DDX60 WILD-TYPE     79    117     27     43     11
D209V1, multiclass
        clus
vv       DDX60 MUTATED DDX60 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             9             117
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX60 MUTATED        0      5      0      2
  DDX60 WILD-TYPE     71     71     34     61
D209V2, multiclass
        clus
vv       DDX60 MUTATED DDX60 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             5              71
  CLUS_3             0              34
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX60 MUTATED        1      5      1      0      2
  DDX60 WILD-TYPE     15     57     50     65     53
D209V3, multiclass
        clus
vv       DDX60 MUTATED DDX60 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             5              57
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX60 MUTATED        2      3      4      0
  DDX60 WILD-TYPE     96     41     46     57
D209V4, multiclass
        clus
vv       DDX60 MUTATED DDX60 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             3              41
  CLUS_3             4              46
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX60 MUTATED        5      1      1      0      0
  DDX60 WILD-TYPE     57     58     39     37     59
D209V5, multiclass
        clus
vv       DDX60 MUTATED DDX60 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX60 MUTATED        3      0      4
  DDX60 WILD-TYPE    103     54     93
D209V6, multiclass
        clus
vv       DDX60 MUTATED DDX60 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX60 MUTATED        8      2      0
  DDX60 WILD-TYPE    115     93     71
D209V7, multiclass
        clus
vv       DDX60 MUTATED DDX60 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX60 MUTATED        9      1      0
  DDX60 WILD-TYPE    148     62     69
D209V8, multiclass
        clus
vv       DDX60 MUTATED DDX60 WILD-TYPE
  CLUS_1             9             148
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DDX60 MUTATED        1      0      3      1      0      0
  DDX60 WILD-TYPE     32     19     56     38     16     45
D209V9, multiclass
        clus
vv       DDX60 MUTATED DDX60 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             3              56
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DDX60 MUTATED        0      0      3      1      1      0
  DDX60 WILD-TYPE     47     39     32     31     22     35
D209V10, multiclass
        clus
vv       DDX60 MUTATED DDX60 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             0              39
  CLUS_3             3              32
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(210) Variable = OSBP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSBP2 MUTATED        0     10      0      1      0
  OSBP2 WILD-TYPE     79    116     27     42     12
D210V1, multiclass
        clus
vv       OSBP2 MUTATED OSBP2 WILD-TYPE
  CLUS_1             0              79
  CLUS_2            10             116
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBP2 MUTATED        1      6      2      0
  OSBP2 WILD-TYPE     70     70     32     63
D210V2, multiclass
        clus
vv       OSBP2 MUTATED OSBP2 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             6              70
  CLUS_3             2              32
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSBP2 MUTATED        0      2      2      1      4
  OSBP2 WILD-TYPE     16     60     49     64     51
D210V3, multiclass
        clus
vv       OSBP2 MUTATED OSBP2 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             2              49
  CLUS_4             1              64
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBP2 MUTATED        1      5      2      1
  OSBP2 WILD-TYPE     97     39     48     56
D210V4, multiclass
        clus
vv       OSBP2 MUTATED OSBP2 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             5              39
  CLUS_3             2              48
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSBP2 MUTATED        6      1      2      1      0
  OSBP2 WILD-TYPE     56     58     38     36     59
D210V5, multiclass
        clus
vv       OSBP2 MUTATED OSBP2 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             1              58
  CLUS_3             2              38
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OSBP2 MUTATED        1      0      9
  OSBP2 WILD-TYPE    105     54     88
D210V6, multiclass
        clus
vv       OSBP2 MUTATED OSBP2 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             9              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OSBP2 MUTATED       10      0      1
  OSBP2 WILD-TYPE    113     95     70
D210V7, multiclass
        clus
vv       OSBP2 MUTATED OSBP2 WILD-TYPE
  CLUS_1            10             113
  CLUS_2             0              95
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OSBP2 MUTATED       10      0      1
  OSBP2 WILD-TYPE    147     63     68
D210V8, multiclass
        clus
vv       OSBP2 MUTATED OSBP2 WILD-TYPE
  CLUS_1            10             147
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OSBP2 MUTATED        1      2      3      3      0      0
  OSBP2 WILD-TYPE     32     17     56     36     16     45
D210V9, multiclass
        clus
vv       OSBP2 MUTATED OSBP2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              17
  CLUS_3             3              56
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OSBP2 MUTATED        4      0      3      1      1      0
  OSBP2 WILD-TYPE     43     39     32     31     22     35
D210V10, multiclass
        clus
vv       OSBP2 MUTATED OSBP2 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             0              39
  CLUS_3             3              32
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(211) Variable = ERBB2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB2 MUTATED        3      9      1      1      0
  ERBB2 WILD-TYPE     76    117     26     42     12
D211V1, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             3              76
  CLUS_2             9             117
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2 MUTATED        1      5      2      3
  ERBB2 WILD-TYPE     70     71     32     60
D211V2, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             5              71
  CLUS_3             2              32
  CLUS_4             3              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB2 MUTATED        1      4      2      2      2
  ERBB2 WILD-TYPE     15     58     49     63     53
D211V3, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             4              58
  CLUS_3             2              49
  CLUS_4             2              63
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2 MUTATED        4      2      3      2
  ERBB2 WILD-TYPE     94     42     47     55
D211V4, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             4              94
  CLUS_2             2              42
  CLUS_3             3              47
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB2 MUTATED        5      2      1      4      1
  ERBB2 WILD-TYPE     57     57     39     33     58
D211V5, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             2              57
  CLUS_3             1              39
  CLUS_4             4              33
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB2 MUTATED        4      1      8
  ERBB2 WILD-TYPE    102     53     89
D211V6, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             1              53
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB2 MUTATED       10      2      2
  ERBB2 WILD-TYPE    113     93     69
D211V7, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1            10             113
  CLUS_2             2              93
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB2 MUTATED       11      2      1
  ERBB2 WILD-TYPE    146     61     68
D211V8, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1            11             146
  CLUS_2             2              61
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERBB2 MUTATED        1      1      3      4      0      1
  ERBB2 WILD-TYPE     32     18     56     35     16     44
D211V9, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             3              56
  CLUS_4             4              35
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERBB2 MUTATED        3      1      3      2      1      0
  ERBB2 WILD-TYPE     44     38     32     30     22     35
D211V10, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             2              30
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(212) Variable = RSF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RSF1 MUTATED        3     11      0      2      1
  RSF1 WILD-TYPE     76    115     27     41     11
D212V1, multiclass
        clus
vv       RSF1 MUTATED RSF1 WILD-TYPE
  CLUS_1            3             76
  CLUS_2           11            115
  CLUS_3            0             27
  CLUS_4            2             41
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RSF1 MUTATED        4      5      3      0
  RSF1 WILD-TYPE     67     71     31     63
D212V2, multiclass
        clus
vv       RSF1 MUTATED RSF1 WILD-TYPE
  CLUS_1            4             67
  CLUS_2            5             71
  CLUS_3            3             31
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RSF1 MUTATED        1      7      2      1      5
  RSF1 WILD-TYPE     15     55     49     64     50
D212V3, multiclass
        clus
vv       RSF1 MUTATED RSF1 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            7             55
  CLUS_3            2             49
  CLUS_4            1             64
  CLUS_5            5             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RSF1 MUTATED        3      7      5      1
  RSF1 WILD-TYPE     95     37     45     56
D212V4, multiclass
        clus
vv       RSF1 MUTATED RSF1 WILD-TYPE
  CLUS_1            3             95
  CLUS_2            7             37
  CLUS_3            5             45
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RSF1 MUTATED        9      1      3      2      1
  RSF1 WILD-TYPE     53     58     37     35     58
D212V5, multiclass
        clus
vv       RSF1 MUTATED RSF1 WILD-TYPE
  CLUS_1            9             53
  CLUS_2            1             58
  CLUS_3            3             37
  CLUS_4            2             35
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RSF1 MUTATED        2      2     12
  RSF1 WILD-TYPE    104     52     85
D212V6, multiclass
        clus
vv       RSF1 MUTATED RSF1 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            2             52
  CLUS_3           12             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RSF1 MUTATED       13      3      1
  RSF1 WILD-TYPE    110     92     70
D212V7, multiclass
        clus
vv       RSF1 MUTATED RSF1 WILD-TYPE
  CLUS_1           13            110
  CLUS_2            3             92
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RSF1 MUTATED       13      2      2
  RSF1 WILD-TYPE    144     61     67
D212V8, multiclass
        clus
vv       RSF1 MUTATED RSF1 WILD-TYPE
  CLUS_1           13            144
  CLUS_2            2             61
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RSF1 MUTATED        1      2      5      2      0      0
  RSF1 WILD-TYPE     32     17     54     37     16     45
D212V9, multiclass
        clus
vv       RSF1 MUTATED RSF1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            2             17
  CLUS_3            5             54
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RSF1 MUTATED        5      0      3      2      0      0
  RSF1 WILD-TYPE     42     39     32     30     23     35
D212V10, multiclass
        clus
vv       RSF1 MUTATED RSF1 WILD-TYPE
  CLUS_1            5             42
  CLUS_2            0             39
  CLUS_3            3             32
  CLUS_4            2             30
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(213) Variable = KIAA1967 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1967 MUTATED        0     14      0      0      3
  KIAA1967 WILD-TYPE     79    112     27     43      9
D213V1, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                0                 79
  CLUS_2               14                112
  CLUS_3                0                 27
  CLUS_4                0                 43
  CLUS_5                3                  9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1967 MUTATED        0     10      2      0
  KIAA1967 WILD-TYPE     71     66     32     63
D213V2, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                0                 71
  CLUS_2               10                 66
  CLUS_3                2                 32
  CLUS_4                0                 63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1967 MUTATED        0      9      3      0      3
  KIAA1967 WILD-TYPE     16     53     48     65     52
D213V3, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                9                 53
  CLUS_3                3                 48
  CLUS_4                0                 65
  CLUS_5                3                 52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1967 MUTATED        3      6      6      0
  KIAA1967 WILD-TYPE     95     38     44     57
D213V4, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                3                 95
  CLUS_2                6                 38
  CLUS_3                6                 44
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1967 MUTATED       12      1      0      2      0
  KIAA1967 WILD-TYPE     50     58     40     35     59
D213V5, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1               12                 50
  CLUS_2                1                 58
  CLUS_3                0                 40
  CLUS_4                2                 35
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1967 MUTATED        1      1     13
  KIAA1967 WILD-TYPE    105     53     84
D213V6, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                1                105
  CLUS_2                1                 53
  CLUS_3               13                 84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1967 MUTATED       14      1      2
  KIAA1967 WILD-TYPE    109     94     69
D213V7, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1               14                109
  CLUS_2                1                 94
  CLUS_3                2                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1967 MUTATED       16      1      0
  KIAA1967 WILD-TYPE    141     62     69
D213V8, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1               16                141
  CLUS_2                1                 62
  CLUS_3                0                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1967 MUTATED        1      2      3      3      0      1
  KIAA1967 WILD-TYPE     32     17     56     36     16     44
D213V9, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                2                 17
  CLUS_3                3                 56
  CLUS_4                3                 36
  CLUS_5                0                 16
  CLUS_6                1                 44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1967 MUTATED        4      1      3      1      1      0
  KIAA1967 WILD-TYPE     43     38     32     31     22     35
D213V10, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                4                 43
  CLUS_2                1                 38
  CLUS_3                3                 32
  CLUS_4                1                 31
  CLUS_5                1                 22
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(214) Variable = CNBD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNBD1 MUTATED        6      4      0      3      0
  CNBD1 WILD-TYPE     73    122     27     40     12
D214V1, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             6              73
  CLUS_2             4             122
  CLUS_3             0              27
  CLUS_4             3              40
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNBD1 MUTATED        4      6      0      0
  CNBD1 WILD-TYPE     67     70     34     63
D214V2, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             6              70
  CLUS_3             0              34
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNBD1 MUTATED        1      1      4      1      4
  CNBD1 WILD-TYPE     15     61     47     64     51
D214V3, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             1              61
  CLUS_3             4              47
  CLUS_4             1              64
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNBD1 MUTATED        6      3      0      2
  CNBD1 WILD-TYPE     92     41     50     55
D214V4, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             6              92
  CLUS_2             3              41
  CLUS_3             0              50
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNBD1 MUTATED        4      1      0      1      6
  CNBD1 WILD-TYPE     58     58     40     36     53
D214V5, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             6              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNBD1 MUTATED        7      1      4
  CNBD1 WILD-TYPE     99     53     93
D214V6, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             7              99
  CLUS_2             1              53
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNBD1 MUTATED        7      2      4
  CNBD1 WILD-TYPE    116     93     67
D214V7, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             7             116
  CLUS_2             2              93
  CLUS_3             4              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNBD1 MUTATED        7      1      5
  CNBD1 WILD-TYPE    150     62     64
D214V8, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             7             150
  CLUS_2             1              62
  CLUS_3             5              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNBD1 MUTATED        1      2      1      3      1      1
  CNBD1 WILD-TYPE     32     17     58     36     15     44
D214V9, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              17
  CLUS_3             1              58
  CLUS_4             3              36
  CLUS_5             1              15
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNBD1 MUTATED        3      0      0      5      0      1
  CNBD1 WILD-TYPE     44     39     35     27     23     34
D214V10, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             0              35
  CLUS_4             5              27
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(215) Variable = DLGAP3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLGAP3 MUTATED        2     10      0      4      0
  DLGAP3 WILD-TYPE     77    116     27     39     12
D215V1, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              2               77
  CLUS_2             10              116
  CLUS_3              0               27
  CLUS_4              4               39
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLGAP3 MUTATED        1     11      1      2
  DLGAP3 WILD-TYPE     70     65     33     61
D215V2, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              1               70
  CLUS_2             11               65
  CLUS_3              1               33
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLGAP3 MUTATED        1      6      1      2      3
  DLGAP3 WILD-TYPE     15     56     50     63     52
D215V3, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              6               56
  CLUS_3              1               50
  CLUS_4              2               63
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLGAP3 MUTATED        2      5      4      2
  DLGAP3 WILD-TYPE     96     39     46     55
D215V4, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              5               39
  CLUS_3              4               46
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLGAP3 MUTATED        8      1      1      3      2
  DLGAP3 WILD-TYPE     54     58     39     34     57
D215V5, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              8               54
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              3               34
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DLGAP3 MUTATED        5      1      9
  DLGAP3 WILD-TYPE    101     53     88
D215V6, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              5              101
  CLUS_2              1               53
  CLUS_3              9               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DLGAP3 MUTATED       12      2      2
  DLGAP3 WILD-TYPE    111     93     69
D215V7, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1             12              111
  CLUS_2              2               93
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DLGAP3 MUTATED       13      2      1
  DLGAP3 WILD-TYPE    144     61     68
D215V8, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1             13              144
  CLUS_2              2               61
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DLGAP3 MUTATED        3      3      2      5      0      1
  DLGAP3 WILD-TYPE     30     16     57     34     16     44
D215V9, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              3               16
  CLUS_3              2               57
  CLUS_4              5               34
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DLGAP3 MUTATED        5      1      2      4      1      1
  DLGAP3 WILD-TYPE     42     38     33     28     22     34
D215V10, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              5               42
  CLUS_2              1               38
  CLUS_3              2               33
  CLUS_4              4               28
  CLUS_5              1               22
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(216) Variable = ABCB6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCB6 MUTATED        0      8      0      0      0
  ABCB6 WILD-TYPE     79    118     27     43     12
D216V1, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             8             118
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCB6 MUTATED        0      4      1      1
  ABCB6 WILD-TYPE     71     72     33     62
D216V2, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             4              72
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCB6 MUTATED        1      4      1      0      2
  ABCB6 WILD-TYPE     15     58     50     65     53
D216V3, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             4              58
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCB6 MUTATED        2      2      3      1
  ABCB6 WILD-TYPE     96     42     47     56
D216V4, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             2              42
  CLUS_3             3              47
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCB6 MUTATED        4      0      1      1      0
  ABCB6 WILD-TYPE     58     59     39     36     59
D216V5, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCB6 MUTATED        3      0      3
  ABCB6 WILD-TYPE    103     54     94
D216V6, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCB6 MUTATED        7      1      0
  ABCB6 WILD-TYPE    116     94     71
D216V7, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             7             116
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCB6 MUTATED        7      0      1
  ABCB6 WILD-TYPE    150     63     68
D216V8, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             7             150
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABCB6 MUTATED        0      0      5      1      0      0
  ABCB6 WILD-TYPE     33     19     54     38     16     45
D216V9, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              19
  CLUS_3             5              54
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABCB6 MUTATED        2      0      3      0      1      0
  ABCB6 WILD-TYPE     45     39     32     32     22     35
D216V10, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             3              32
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(217) Variable = CYP27B1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP27B1 MUTATED        0      4      0      1      0
  CYP27B1 WILD-TYPE     79    122     27     42     12
D217V1, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               4               122
  CLUS_3               0                27
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP27B1 MUTATED        1      3      0      1
  CYP27B1 WILD-TYPE     70     73     34     62
D217V2, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               3                73
  CLUS_3               0                34
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP27B1 MUTATED        0      2      1      1      1
  CYP27B1 WILD-TYPE     16     60     50     64     54
D217V3, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               2                60
  CLUS_3               1                50
  CLUS_4               1                64
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP27B1 MUTATED        0      2      2      1
  CYP27B1 WILD-TYPE     98     42     48     56
D217V4, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               0                98
  CLUS_2               2                42
  CLUS_3               2                48
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP27B1 MUTATED        2      1      1      0      0
  CYP27B1 WILD-TYPE     60     58     39     37     59
D217V5, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               2                60
  CLUS_2               1                58
  CLUS_3               1                39
  CLUS_4               0                37
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP27B1 MUTATED        1      0      3
  CYP27B1 WILD-TYPE    105     54     94
D217V6, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               0                54
  CLUS_3               3                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP27B1 MUTATED        3      2      0
  CYP27B1 WILD-TYPE    120     93     71
D217V7, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               3               120
  CLUS_2               2                93
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP27B1 MUTATED        3      1      1
  CYP27B1 WILD-TYPE    154     62     68
D217V8, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               3               154
  CLUS_2               1                62
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CYP27B1 MUTATED        1      2      1      0      1      0
  CYP27B1 WILD-TYPE     32     17     58     39     15     45
D217V9, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               2                17
  CLUS_3               1                58
  CLUS_4               0                39
  CLUS_5               1                15
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CYP27B1 MUTATED        2      0      1      1      0      1
  CYP27B1 WILD-TYPE     45     39     34     31     23     34
D217V10, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               2                45
  CLUS_2               0                39
  CLUS_3               1                34
  CLUS_4               1                31
  CLUS_5               0                23
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(218) Variable = RAB14 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB14 MUTATED        1      4      2      1      0
  RAB14 WILD-TYPE     78    122     25     42     12
D218V1, multiclass
        clus
vv       RAB14 MUTATED RAB14 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             4             122
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB14 MUTATED        1      4      1      0
  RAB14 WILD-TYPE     70     72     33     63
D218V2, multiclass
        clus
vv       RAB14 MUTATED RAB14 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             4              72
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB14 MUTATED        1      4      1      0      2
  RAB14 WILD-TYPE     15     58     50     65     53
D218V3, multiclass
        clus
vv       RAB14 MUTATED RAB14 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             4              58
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB14 MUTATED        2      6      0      0
  RAB14 WILD-TYPE     96     38     50     57
D218V4, multiclass
        clus
vv       RAB14 MUTATED RAB14 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             6              38
  CLUS_3             0              50
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB14 MUTATED        2      0      1      1      1
  RAB14 WILD-TYPE     60     59     39     36     58
D218V5, multiclass
        clus
vv       RAB14 MUTATED RAB14 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB14 MUTATED        1      0      4
  RAB14 WILD-TYPE    105     54     93
D218V6, multiclass
        clus
vv       RAB14 MUTATED RAB14 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB14 MUTATED        6      1      1
  RAB14 WILD-TYPE    117     94     70
D218V7, multiclass
        clus
vv       RAB14 MUTATED RAB14 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB14 MUTATED        6      1      1
  RAB14 WILD-TYPE    151     62     68
D218V8, multiclass
        clus
vv       RAB14 MUTATED RAB14 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RAB14 MUTATED        3      0      1      1      0      1
  RAB14 WILD-TYPE     30     19     58     38     16     44
D218V9, multiclass
        clus
vv       RAB14 MUTATED RAB14 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              19
  CLUS_3             1              58
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RAB14 MUTATED        3      1      1      0      0      1
  RAB14 WILD-TYPE     44     38     34     32     23     34
D218V10, multiclass
        clus
vv       RAB14 MUTATED RAB14 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             1              38
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(219) Variable = PODN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PODN MUTATED        1      9      1      1      0
  PODN WILD-TYPE     78    117     26     42     12
D219V1, multiclass
        clus
vv       PODN MUTATED PODN WILD-TYPE
  CLUS_1            1             78
  CLUS_2            9            117
  CLUS_3            1             26
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PODN MUTATED        2      6      1      1
  PODN WILD-TYPE     69     70     33     62
D219V2, multiclass
        clus
vv       PODN MUTATED PODN WILD-TYPE
  CLUS_1            2             69
  CLUS_2            6             70
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PODN MUTATED        1      3      3      2      3
  PODN WILD-TYPE     15     59     48     63     52
D219V3, multiclass
        clus
vv       PODN MUTATED PODN WILD-TYPE
  CLUS_1            1             15
  CLUS_2            3             59
  CLUS_3            3             48
  CLUS_4            2             63
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PODN MUTATED        4      4      2      2
  PODN WILD-TYPE     94     40     48     55
D219V4, multiclass
        clus
vv       PODN MUTATED PODN WILD-TYPE
  CLUS_1            4             94
  CLUS_2            4             40
  CLUS_3            2             48
  CLUS_4            2             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PODN MUTATED        6      1      3      1      1
  PODN WILD-TYPE     56     58     37     36     58
D219V5, multiclass
        clus
vv       PODN MUTATED PODN WILD-TYPE
  CLUS_1            6             56
  CLUS_2            1             58
  CLUS_3            3             37
  CLUS_4            1             36
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PODN MUTATED        5      0      7
  PODN WILD-TYPE    101     54     90
D219V6, multiclass
        clus
vv       PODN MUTATED PODN WILD-TYPE
  CLUS_1            5            101
  CLUS_2            0             54
  CLUS_3            7             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PODN MUTATED        9      3      1
  PODN WILD-TYPE    114     92     70
D219V7, multiclass
        clus
vv       PODN MUTATED PODN WILD-TYPE
  CLUS_1            9            114
  CLUS_2            3             92
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PODN MUTATED       11      1      1
  PODN WILD-TYPE    146     62     68
D219V8, multiclass
        clus
vv       PODN MUTATED PODN WILD-TYPE
  CLUS_1           11            146
  CLUS_2            1             62
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PODN MUTATED        1      2      4      2      1      0
  PODN WILD-TYPE     32     17     55     37     15     45
D219V9, multiclass
        clus
vv       PODN MUTATED PODN WILD-TYPE
  CLUS_1            1             32
  CLUS_2            2             17
  CLUS_3            4             55
  CLUS_4            2             37
  CLUS_5            1             15
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PODN MUTATED        2      0      3      2      2      1
  PODN WILD-TYPE     45     39     32     30     21     34
D219V10, multiclass
        clus
vv       PODN MUTATED PODN WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            3             32
  CLUS_4            2             30
  CLUS_5            2             21
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(220) Variable = WASF3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WASF3 MUTATED        2      6      2      1      0
  WASF3 WILD-TYPE     77    120     25     42     12
D220V1, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             2              77
  CLUS_2             6             120
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WASF3 MUTATED        0      9      1      0
  WASF3 WILD-TYPE     71     67     33     63
D220V2, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             9              67
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WASF3 MUTATED        0      2      4      2      1
  WASF3 WILD-TYPE     16     60     47     63     54
D220V3, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             4              47
  CLUS_4             2              63
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WASF3 MUTATED        1      6      1      1
  WASF3 WILD-TYPE     97     38     49     56
D220V4, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             6              38
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WASF3 MUTATED        5      1      0      3      0
  WASF3 WILD-TYPE     57     58     40     34     59
D220V5, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WASF3 MUTATED        1      1      7
  WASF3 WILD-TYPE    105     53     90
D220V6, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             1              53
  CLUS_3             7              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WASF3 MUTATED        8      2      1
  WASF3 WILD-TYPE    115     93     70
D220V7, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             2              93
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WASF3 MUTATED        9      2      0
  WASF3 WILD-TYPE    148     61     69
D220V8, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             9             148
  CLUS_2             2              61
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WASF3 MUTATED        0      1      4      2      0      1
  WASF3 WILD-TYPE     33     18     55     37     16     44
D220V9, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              18
  CLUS_3             4              55
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WASF3 MUTATED        2      1      2      3      0      0
  WASF3 WILD-TYPE     45     38     33     29     23     35
D220V10, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              38
  CLUS_3             2              33
  CLUS_4             3              29
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(221) Variable = ZDHHC7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZDHHC7 MUTATED        0      6      0      0      0
  ZDHHC7 WILD-TYPE     79    120     27     43     12
D221V1, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              6              120
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZDHHC7 MUTATED        0      5      0      0
  ZDHHC7 WILD-TYPE     71     71     34     63
D221V2, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              5               71
  CLUS_3              0               34
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZDHHC7 MUTATED        0      2      1      0      1
  ZDHHC7 WILD-TYPE     16     60     50     65     54
D221V3, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              2               60
  CLUS_3              1               50
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZDHHC7 MUTATED        1      2      1      0
  ZDHHC7 WILD-TYPE     97     42     49     57
D221V4, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              2               42
  CLUS_3              1               49
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZDHHC7 MUTATED        5      0      1      0      0
  ZDHHC7 WILD-TYPE     57     59     39     37     59
D221V5, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              5               57
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              0               37
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZDHHC7 MUTATED        0      0      6
  ZDHHC7 WILD-TYPE    106     54     91
D221V6, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              0              106
  CLUS_2              0               54
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZDHHC7 MUTATED        5      1      0
  ZDHHC7 WILD-TYPE    118     94     71
D221V7, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              5              118
  CLUS_2              1               94
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZDHHC7 MUTATED        6      0      0
  ZDHHC7 WILD-TYPE    151     63     69
D221V8, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              6              151
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZDHHC7 MUTATED        0      1      1      3      0      0
  ZDHHC7 WILD-TYPE     33     18     58     36     16     45
D221V9, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               18
  CLUS_3              1               58
  CLUS_4              3               36
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZDHHC7 MUTATED        2      0      1      1      1      0
  ZDHHC7 WILD-TYPE     45     39     34     31     22     35
D221V10, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(222) Variable = CASC3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASC3 MUTATED        2      6      0      0      0
  CASC3 WILD-TYPE     77    120     27     43     12
D222V1, multiclass
        clus
vv       CASC3 MUTATED CASC3 WILD-TYPE
  CLUS_1             2              77
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASC3 MUTATED        2      5      0      1
  CASC3 WILD-TYPE     69     71     34     62
D222V2, multiclass
        clus
vv       CASC3 MUTATED CASC3 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             5              71
  CLUS_3             0              34
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASC3 MUTATED        0      2      2      0      3
  CASC3 WILD-TYPE     16     60     49     65     52
D222V3, multiclass
        clus
vv       CASC3 MUTATED CASC3 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASC3 MUTATED        2      2      3      0
  CASC3 WILD-TYPE     96     42     47     57
D222V4, multiclass
        clus
vv       CASC3 MUTATED CASC3 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             2              42
  CLUS_3             3              47
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASC3 MUTATED        2      2      1      0      2
  CASC3 WILD-TYPE     60     57     39     37     57
D222V5, multiclass
        clus
vv       CASC3 MUTATED CASC3 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             2              57
  CLUS_3             1              39
  CLUS_4             0              37
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASC3 MUTATED        2      2      3
  CASC3 WILD-TYPE    104     52     94
D222V6, multiclass
        clus
vv       CASC3 MUTATED CASC3 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             2              52
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASC3 MUTATED        3      3      2
  CASC3 WILD-TYPE    120     92     69
D222V7, multiclass
        clus
vv       CASC3 MUTATED CASC3 WILD-TYPE
  CLUS_1             3             120
  CLUS_2             3              92
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASC3 MUTATED        5      1      2
  CASC3 WILD-TYPE    152     62     67
D222V8, multiclass
        clus
vv       CASC3 MUTATED CASC3 WILD-TYPE
  CLUS_1             5             152
  CLUS_2             1              62
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CASC3 MUTATED        2      0      1      3      1      1
  CASC3 WILD-TYPE     31     19     58     36     15     44
D222V9, multiclass
        clus
vv       CASC3 MUTATED CASC3 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              19
  CLUS_3             1              58
  CLUS_4             3              36
  CLUS_5             1              15
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CASC3 MUTATED        1      1      0      1      3      2
  CASC3 WILD-TYPE     46     38     35     31     20     33
D222V10, multiclass
        clus
vv       CASC3 MUTATED CASC3 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              38
  CLUS_3             0              35
  CLUS_4             1              31
  CLUS_5             3              20
  CLUS_6             2              33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(223) Variable = ABLIM2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABLIM2 MUTATED        0      9      0      1      0
  ABLIM2 WILD-TYPE     79    117     27     42     12
D223V1, multiclass
        clus
vv       ABLIM2 MUTATED ABLIM2 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              9              117
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABLIM2 MUTATED        1      6      0      2
  ABLIM2 WILD-TYPE     70     70     34     61
D223V2, multiclass
        clus
vv       ABLIM2 MUTATED ABLIM2 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              6               70
  CLUS_3              0               34
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABLIM2 MUTATED        0      5      3      1      1
  ABLIM2 WILD-TYPE     16     57     48     64     54
D223V3, multiclass
        clus
vv       ABLIM2 MUTATED ABLIM2 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              5               57
  CLUS_3              3               48
  CLUS_4              1               64
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABLIM2 MUTATED        2      4      4      0
  ABLIM2 WILD-TYPE     96     40     46     57
D223V4, multiclass
        clus
vv       ABLIM2 MUTATED ABLIM2 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              4               40
  CLUS_3              4               46
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABLIM2 MUTATED        4      1      2      2      0
  ABLIM2 WILD-TYPE     58     58     38     35     59
D223V5, multiclass
        clus
vv       ABLIM2 MUTATED ABLIM2 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              1               58
  CLUS_3              2               38
  CLUS_4              2               35
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ABLIM2 MUTATED        1      2      6
  ABLIM2 WILD-TYPE    105     52     91
D223V6, multiclass
        clus
vv       ABLIM2 MUTATED ABLIM2 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              2               52
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ABLIM2 MUTATED        8      3      0
  ABLIM2 WILD-TYPE    115     92     71
D223V7, multiclass
        clus
vv       ABLIM2 MUTATED ABLIM2 WILD-TYPE
  CLUS_1              8              115
  CLUS_2              3               92
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ABLIM2 MUTATED        8      2      1
  ABLIM2 WILD-TYPE    149     61     68
D223V8, multiclass
        clus
vv       ABLIM2 MUTATED ABLIM2 WILD-TYPE
  CLUS_1              8              149
  CLUS_2              2               61
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABLIM2 MUTATED        1      3      3      2      0      0
  ABLIM2 WILD-TYPE     32     16     56     37     16     45
D223V9, multiclass
        clus
vv       ABLIM2 MUTATED ABLIM2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              3               16
  CLUS_3              3               56
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABLIM2 MUTATED        4      1      2      0      2      0
  ABLIM2 WILD-TYPE     43     38     33     32     21     35
D223V10, multiclass
        clus
vv       ABLIM2 MUTATED ABLIM2 WILD-TYPE
  CLUS_1              4               43
  CLUS_2              1               38
  CLUS_3              2               33
  CLUS_4              0               32
  CLUS_5              2               21
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(224) Variable = ATM MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATM MUTATED        4     20      1      4      1
  ATM WILD-TYPE     75    106     26     39     11
D224V1, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           4            75
  CLUS_2          20           106
  CLUS_3           1            26
  CLUS_4           4            39
  CLUS_5           1            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED        1     16      3      6
  ATM WILD-TYPE     70     60     31     57
D224V2, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           1            70
  CLUS_2          16            60
  CLUS_3           3            31
  CLUS_4           6            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATM MUTATED        2      9      4      4      8
  ATM WILD-TYPE     14     53     47     61     47
D224V3, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           2            14
  CLUS_2           9            53
  CLUS_3           4            47
  CLUS_4           4            61
  CLUS_5           8            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED        8      7      9      3
  ATM WILD-TYPE     90     37     41     54
D224V4, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           8            90
  CLUS_2           7            37
  CLUS_3           9            41
  CLUS_4           3            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATM MUTATED       14      4      4      4      1
  ATM WILD-TYPE     48     55     36     33     58
D224V5, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          14            48
  CLUS_2           4            55
  CLUS_3           4            36
  CLUS_4           4            33
  CLUS_5           1            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED        7      4     16
  ATM WILD-TYPE     99     50     81
D224V6, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           7            99
  CLUS_2           4            50
  CLUS_3          16            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED       20      8      2
  ATM WILD-TYPE    103     87     69
D224V7, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          20           103
  CLUS_2           8            87
  CLUS_3           2            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED       23      6      1
  ATM WILD-TYPE    134     57     68
D224V8, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          23           134
  CLUS_2           6            57
  CLUS_3           1            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATM MUTATED        3      0      8      8      0      4
  ATM WILD-TYPE     30     19     51     31     16     41
D224V9, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3            30
  CLUS_2           0            19
  CLUS_3           8            51
  CLUS_4           8            31
  CLUS_5           0            16
  CLUS_6           4            41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATM MUTATED        6      2      7      5      3      0
  ATM WILD-TYPE     41     37     28     27     20     35
D224V10, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           6            41
  CLUS_2           2            37
  CLUS_3           7            28
  CLUS_4           5            27
  CLUS_5           3            20
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(225) Variable = ZC3H13 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H13 MUTATED        1     21      4      1      1
  ZC3H13 WILD-TYPE     78    105     23     42     11
D225V1, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              1               78
  CLUS_2             21              105
  CLUS_3              4               23
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H13 MUTATED        0     15      3      3
  ZC3H13 WILD-TYPE     71     61     31     60
D225V2, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              0               71
  CLUS_2             15               61
  CLUS_3              3               31
  CLUS_4              3               60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H13 MUTATED        2     10      6      0      6
  ZC3H13 WILD-TYPE     14     52     45     65     49
D225V3, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              2               14
  CLUS_2             10               52
  CLUS_3              6               45
  CLUS_4              0               65
  CLUS_5              6               49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H13 MUTATED        3     14      6      1
  ZC3H13 WILD-TYPE     95     30     44     56
D225V4, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              3               95
  CLUS_2             14               30
  CLUS_3              6               44
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H13 MUTATED       13      1      4      7      2
  ZC3H13 WILD-TYPE     49     58     36     30     57
D225V5, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1             13               49
  CLUS_2              1               58
  CLUS_3              4               36
  CLUS_4              7               30
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZC3H13 MUTATED        3      3     21
  ZC3H13 WILD-TYPE    103     51     76
D225V6, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              3               51
  CLUS_3             21               76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZC3H13 MUTATED       25      2      2
  ZC3H13 WILD-TYPE     98     93     69
D225V7, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1             25               98
  CLUS_2              2               93
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZC3H13 MUTATED       23      2      4
  ZC3H13 WILD-TYPE    134     61     65
D225V8, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1             23              134
  CLUS_2              2               61
  CLUS_3              4               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZC3H13 MUTATED        3      4      7      3      0      1
  ZC3H13 WILD-TYPE     30     15     52     36     16     44
D225V9, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              4               15
  CLUS_3              7               52
  CLUS_4              3               36
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZC3H13 MUTATED        6      2      6      2      2      0
  ZC3H13 WILD-TYPE     41     37     29     30     21     35
D225V10, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              6               41
  CLUS_2              2               37
  CLUS_3              6               29
  CLUS_4              2               30
  CLUS_5              2               21
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(226) Variable = PANK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PANK1 MUTATED        0      7      1      0      0
  PANK1 WILD-TYPE     79    119     26     43     12
D226V1, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             7             119
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PANK1 MUTATED        0      3      2      1
  PANK1 WILD-TYPE     71     73     32     62
D226V2, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             3              73
  CLUS_3             2              32
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PANK1 MUTATED        0      3      1      1      3
  PANK1 WILD-TYPE     16     59     50     64     52
D226V3, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              59
  CLUS_3             1              50
  CLUS_4             1              64
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PANK1 MUTATED        1      3      2      2
  PANK1 WILD-TYPE     97     41     48     55
D226V4, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             3              41
  CLUS_3             2              48
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PANK1 MUTATED        3      1      1      3      0
  PANK1 WILD-TYPE     59     58     39     34     59
D226V5, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PANK1 MUTATED        3      1      4
  PANK1 WILD-TYPE    103     53     93
D226V6, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             1              53
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PANK1 MUTATED        6      2      0
  PANK1 WILD-TYPE    117     93     71
D226V7, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PANK1 MUTATED        5      2      1
  PANK1 WILD-TYPE    152     61     68
D226V8, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             5             152
  CLUS_2             2              61
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PANK1 MUTATED        0      2      2      1      0      1
  PANK1 WILD-TYPE     33     17     57     38     16     44
D226V9, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              17
  CLUS_3             2              57
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PANK1 MUTATED        1      1      1      1      2      0
  PANK1 WILD-TYPE     46     38     34     31     21     35
D226V10, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              38
  CLUS_3             1              34
  CLUS_4             1              31
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(227) Variable = IRS4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS4 MUTATED        3     15      2      1      2
  IRS4 WILD-TYPE     76    111     25     42     10
D227V1, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            3             76
  CLUS_2           15            111
  CLUS_3            2             25
  CLUS_4            1             42
  CLUS_5            2             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        3     11      5      0
  IRS4 WILD-TYPE     68     65     29     63
D227V2, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            3             68
  CLUS_2           11             65
  CLUS_3            5             29
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS4 MUTATED        0      5      8      2      4
  IRS4 WILD-TYPE     16     57     43     63     51
D227V3, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            5             57
  CLUS_3            8             43
  CLUS_4            2             63
  CLUS_5            4             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        3     11      4      1
  IRS4 WILD-TYPE     95     33     46     56
D227V4, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            3             95
  CLUS_2           11             33
  CLUS_3            4             46
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS4 MUTATED       11      3      3      2      2
  IRS4 WILD-TYPE     51     56     37     35     57
D227V5, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1           11             51
  CLUS_2            3             56
  CLUS_3            3             37
  CLUS_4            2             35
  CLUS_5            2             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        6      1     14
  IRS4 WILD-TYPE    100     53     83
D227V6, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            6            100
  CLUS_2            1             53
  CLUS_3           14             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED       15      3      5
  IRS4 WILD-TYPE    108     92     66
D227V7, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1           15            108
  CLUS_2            3             92
  CLUS_3            5             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED       19      3      1
  IRS4 WILD-TYPE    138     60     68
D227V8, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1           19            138
  CLUS_2            3             60
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IRS4 MUTATED        4      1      4      5      0      2
  IRS4 WILD-TYPE     29     18     55     34     16     43
D227V9, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            4             29
  CLUS_2            1             18
  CLUS_3            4             55
  CLUS_4            5             34
  CLUS_5            0             16
  CLUS_6            2             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IRS4 MUTATED        6      2      3      2      3      0
  IRS4 WILD-TYPE     41     37     32     30     20     35
D227V10, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            6             41
  CLUS_2            2             37
  CLUS_3            3             32
  CLUS_4            2             30
  CLUS_5            3             20
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(228) Variable = KIAA1009 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1009 MUTATED        3      9      1      1      1
  KIAA1009 WILD-TYPE     76    117     26     42     11
D228V1, multiclass
        clus
vv       KIAA1009 MUTATED KIAA1009 WILD-TYPE
  CLUS_1                3                 76
  CLUS_2                9                117
  CLUS_3                1                 26
  CLUS_4                1                 42
  CLUS_5                1                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1009 MUTATED        4      7      2      1
  KIAA1009 WILD-TYPE     67     69     32     62
D228V2, multiclass
        clus
vv       KIAA1009 MUTATED KIAA1009 WILD-TYPE
  CLUS_1                4                 67
  CLUS_2                7                 69
  CLUS_3                2                 32
  CLUS_4                1                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1009 MUTATED        1      6      3      0      2
  KIAA1009 WILD-TYPE     15     56     48     65     53
D228V3, multiclass
        clus
vv       KIAA1009 MUTATED KIAA1009 WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                6                 56
  CLUS_3                3                 48
  CLUS_4                0                 65
  CLUS_5                2                 53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1009 MUTATED        1      5      5      1
  KIAA1009 WILD-TYPE     97     39     45     56
D228V4, multiclass
        clus
vv       KIAA1009 MUTATED KIAA1009 WILD-TYPE
  CLUS_1                1                 97
  CLUS_2                5                 39
  CLUS_3                5                 45
  CLUS_4                1                 56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1009 MUTATED        7      0      1      5      2
  KIAA1009 WILD-TYPE     55     59     39     32     57
D228V5, multiclass
        clus
vv       KIAA1009 MUTATED KIAA1009 WILD-TYPE
  CLUS_1                7                 55
  CLUS_2                0                 59
  CLUS_3                1                 39
  CLUS_4                5                 32
  CLUS_5                2                 57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1009 MUTATED        3      1     11
  KIAA1009 WILD-TYPE    103     53     86
D228V6, multiclass
        clus
vv       KIAA1009 MUTATED KIAA1009 WILD-TYPE
  CLUS_1                3                103
  CLUS_2                1                 53
  CLUS_3               11                 86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1009 MUTATED       11      2      2
  KIAA1009 WILD-TYPE    112     93     69
D228V7, multiclass
        clus
vv       KIAA1009 MUTATED KIAA1009 WILD-TYPE
  CLUS_1               11                112
  CLUS_2                2                 93
  CLUS_3                2                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1009 MUTATED       11      1      3
  KIAA1009 WILD-TYPE    146     62     66
D228V8, multiclass
        clus
vv       KIAA1009 MUTATED KIAA1009 WILD-TYPE
  CLUS_1               11                146
  CLUS_2                1                 62
  CLUS_3                3                 66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1009 MUTATED        2      4      3      2      0      1
  KIAA1009 WILD-TYPE     31     15     56     37     16     44
D228V9, multiclass
        clus
vv       KIAA1009 MUTATED KIAA1009 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                4                 15
  CLUS_3                3                 56
  CLUS_4                2                 37
  CLUS_5                0                 16
  CLUS_6                1                 44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1009 MUTATED        7      0      2      0      2      1
  KIAA1009 WILD-TYPE     40     39     33     32     21     34
D228V10, multiclass
        clus
vv       KIAA1009 MUTATED KIAA1009 WILD-TYPE
  CLUS_1                7                 40
  CLUS_2                0                 39
  CLUS_3                2                 33
  CLUS_4                0                 32
  CLUS_5                2                 21
  CLUS_6                1                 34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(229) Variable = ADNP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADNP2 MUTATED        1     14      2      0      1
  ADNP2 WILD-TYPE     78    112     25     43     11
D229V1, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             1              78
  CLUS_2            14             112
  CLUS_3             2              25
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADNP2 MUTATED        1      9      5      0
  ADNP2 WILD-TYPE     70     67     29     63
D229V2, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             9              67
  CLUS_3             5              29
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADNP2 MUTATED        1      8      4      0      2
  ADNP2 WILD-TYPE     15     54     47     65     53
D229V3, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             8              54
  CLUS_3             4              47
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADNP2 MUTATED        2     10      3      0
  ADNP2 WILD-TYPE     96     34     47     57
D229V4, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             2              96
  CLUS_2            10              34
  CLUS_3             3              47
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADNP2 MUTATED       10      0      2      4      0
  ADNP2 WILD-TYPE     52     59     38     33     59
D229V5, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1            10              52
  CLUS_2             0              59
  CLUS_3             2              38
  CLUS_4             4              33
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ADNP2 MUTATED        3      0     13
  ADNP2 WILD-TYPE    103     54     84
D229V6, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3            13              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ADNP2 MUTATED       16      0      2
  ADNP2 WILD-TYPE    107     95     69
D229V7, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1            16             107
  CLUS_2             0              95
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ADNP2 MUTATED       18      0      0
  ADNP2 WILD-TYPE    139     63     69
D229V8, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1            18             139
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ADNP2 MUTATED        1      3      7      3      0      0
  ADNP2 WILD-TYPE     32     16     52     36     16     45
D229V9, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             3              16
  CLUS_3             7              52
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ADNP2 MUTATED        6      0      5      2      1      0
  ADNP2 WILD-TYPE     41     39     30     30     22     35
D229V10, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             6              41
  CLUS_2             0              39
  CLUS_3             5              30
  CLUS_4             2              30
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(230) Variable = ZNF124 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF124 MUTATED        1      7      1      0      0
  ZNF124 WILD-TYPE     78    119     26     43     12
D230V1, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              7              119
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF124 MUTATED        1      4      0      1
  ZNF124 WILD-TYPE     70     72     34     62
D230V2, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              4               72
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF124 MUTATED        2      4      1      0      1
  ZNF124 WILD-TYPE     14     58     50     65     54
D230V3, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              2               14
  CLUS_2              4               58
  CLUS_3              1               50
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF124 MUTATED        2      4      2      0
  ZNF124 WILD-TYPE     96     40     48     57
D230V4, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              4               40
  CLUS_3              2               48
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF124 MUTATED        6      0      2      0      0
  ZNF124 WILD-TYPE     56     59     38     37     59
D230V5, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              6               56
  CLUS_2              0               59
  CLUS_3              2               38
  CLUS_4              0               37
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF124 MUTATED        1      0      7
  ZNF124 WILD-TYPE    105     54     90
D230V6, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               54
  CLUS_3              7               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF124 MUTATED        7      1      1
  ZNF124 WILD-TYPE    116     94     70
D230V7, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              7              116
  CLUS_2              1               94
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF124 MUTATED        9      0      0
  ZNF124 WILD-TYPE    148     63     69
D230V8, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              9              148
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF124 MUTATED        0      1      2      2      0      0
  ZNF124 WILD-TYPE     33     18     57     37     16     45
D230V9, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF124 MUTATED        1      0      2      1      1      0
  ZNF124 WILD-TYPE     46     39     33     31     22     35
D230V10, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(231) Variable = INTS12 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INTS12 MUTATED        0      5      0      1      0
  INTS12 WILD-TYPE     79    121     27     42     12
D231V1, multiclass
        clus
vv       INTS12 MUTATED INTS12 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              5              121
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS12 MUTATED        0      3      0      1
  INTS12 WILD-TYPE     71     73     34     62
D231V2, multiclass
        clus
vv       INTS12 MUTATED INTS12 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              3               73
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INTS12 MUTATED        0      1      1      2      2
  INTS12 WILD-TYPE     16     61     50     63     53
D231V3, multiclass
        clus
vv       INTS12 MUTATED INTS12 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              1               61
  CLUS_3              1               50
  CLUS_4              2               63
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS12 MUTATED        0      4      0      2
  INTS12 WILD-TYPE     98     40     50     55
D231V4, multiclass
        clus
vv       INTS12 MUTATED INTS12 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              4               40
  CLUS_3              0               50
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INTS12 MUTATED        2      2      0      0      0
  INTS12 WILD-TYPE     60     57     40     37     59
D231V5, multiclass
        clus
vv       INTS12 MUTATED INTS12 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              2               57
  CLUS_3              0               40
  CLUS_4              0               37
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  INTS12 MUTATED        2      0      2
  INTS12 WILD-TYPE    104     54     95
D231V6, multiclass
        clus
vv       INTS12 MUTATED INTS12 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              0               54
  CLUS_3              2               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  INTS12 MUTATED        5      1      0
  INTS12 WILD-TYPE    118     94     71
D231V7, multiclass
        clus
vv       INTS12 MUTATED INTS12 WILD-TYPE
  CLUS_1              5              118
  CLUS_2              1               94
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  INTS12 MUTATED        5      0      1
  INTS12 WILD-TYPE    152     63     68
D231V8, multiclass
        clus
vv       INTS12 MUTATED INTS12 WILD-TYPE
  CLUS_1              5              152
  CLUS_2              0               63
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  INTS12 MUTATED        1      0      2      0      1      0
  INTS12 WILD-TYPE     32     19     57     39     15     45
D231V9, multiclass
        clus
vv       INTS12 MUTATED INTS12 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               19
  CLUS_3              2               57
  CLUS_4              0               39
  CLUS_5              1               15
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  INTS12 MUTATED        2      0      1      0      0      1
  INTS12 WILD-TYPE     45     39     34     32     23     34
D231V10, multiclass
        clus
vv       INTS12 MUTATED INTS12 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(232) Variable = DNAH5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAH5 MUTATED       10     34      2      6      3
  DNAH5 WILD-TYPE     69     92     25     37      9
D232V1, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1            10              69
  CLUS_2            34              92
  CLUS_3             2              25
  CLUS_4             6              37
  CLUS_5             3               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH5 MUTATED        6     25      8      7
  DNAH5 WILD-TYPE     65     51     26     56
D232V2, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1             6              65
  CLUS_2            25              51
  CLUS_3             8              26
  CLUS_4             7              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAH5 MUTATED        2     17      8     10     12
  DNAH5 WILD-TYPE     14     45     43     55     43
D232V3, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1             2              14
  CLUS_2            17              45
  CLUS_3             8              43
  CLUS_4            10              55
  CLUS_5            12              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH5 MUTATED       16     15     10      8
  DNAH5 WILD-TYPE     82     29     40     49
D232V4, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1            16              82
  CLUS_2            15              29
  CLUS_3            10              40
  CLUS_4             8              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAH5 MUTATED       23      6      6      8      8
  DNAH5 WILD-TYPE     39     53     34     29     51
D232V5, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1            23              39
  CLUS_2             6              53
  CLUS_3             6              34
  CLUS_4             8              29
  CLUS_5             8              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH5 MUTATED       23      5     23
  DNAH5 WILD-TYPE     83     49     74
D232V6, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1            23              83
  CLUS_2             5              49
  CLUS_3            23              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH5 MUTATED       37     11      8
  DNAH5 WILD-TYPE     86     84     63
D232V7, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1            37              86
  CLUS_2            11              84
  CLUS_3             8              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH5 MUTATED       43      5      8
  DNAH5 WILD-TYPE    114     58     61
D232V8, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1            43             114
  CLUS_2             5              58
  CLUS_3             8              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DNAH5 MUTATED        4      3     18     10      4      3
  DNAH5 WILD-TYPE     29     16     41     29     12     42
D232V9, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1             4              29
  CLUS_2             3              16
  CLUS_3            18              41
  CLUS_4            10              29
  CLUS_5             4              12
  CLUS_6             3              42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DNAH5 MUTATED       10      2     11     11      5      3
  DNAH5 WILD-TYPE     37     37     24     21     18     32
D232V10, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1            10              37
  CLUS_2             2              37
  CLUS_3            11              24
  CLUS_4            11              21
  CLUS_5             5              18
  CLUS_6             3              32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(233) Variable = CSF3R MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSF3R MUTATED        0      8      2      1      1
  CSF3R WILD-TYPE     79    118     25     42     11
D233V1, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             0              79
  CLUS_2             8             118
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSF3R MUTATED        0      8      1      0
  CSF3R WILD-TYPE     71     68     33     63
D233V2, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             0              71
  CLUS_2             8              68
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSF3R MUTATED        1      3      3      0      4
  CSF3R WILD-TYPE     15     59     48     65     51
D233V3, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3              59
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSF3R MUTATED        3      4      2      2
  CSF3R WILD-TYPE     95     40     48     55
D233V4, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             3              95
  CLUS_2             4              40
  CLUS_3             2              48
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSF3R MUTATED        5      2      2      3      0
  CSF3R WILD-TYPE     57     57     38     34     59
D233V5, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             5              57
  CLUS_2             2              57
  CLUS_3             2              38
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSF3R MUTATED        1      1     10
  CSF3R WILD-TYPE    105     53     87
D233V6, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             1             105
  CLUS_2             1              53
  CLUS_3            10              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSF3R MUTATED       10      1      1
  CSF3R WILD-TYPE    113     94     70
D233V7, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1            10             113
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSF3R MUTATED       10      1      1
  CSF3R WILD-TYPE    147     62     68
D233V8, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1            10             147
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CSF3R MUTATED        1      2      4      1      0      1
  CSF3R WILD-TYPE     32     17     55     38     16     44
D233V9, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              17
  CLUS_3             4              55
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CSF3R MUTATED        3      1      3      1      1      0
  CSF3R WILD-TYPE     44     38     32     31     22     35
D233V10, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             3              44
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(234) Variable = IDH2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDH2 MUTATED        0      3      0      0      1
  IDH2 WILD-TYPE     79    123     27     43     11
D234V1, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            3            123
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        0      2      1      1
  IDH2 WILD-TYPE     71     74     33     62
D234V2, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            2             74
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDH2 MUTATED        0      2      0      1      0
  IDH2 WILD-TYPE     16     60     51     64     55
D234V3, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            2             60
  CLUS_3            0             51
  CLUS_4            1             64
  CLUS_5            0             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        0      1      1      1
  IDH2 WILD-TYPE     98     43     49     56
D234V4, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            0             98
  CLUS_2            1             43
  CLUS_3            1             49
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDH2 MUTATED        2      0      1      1      0
  IDH2 WILD-TYPE     60     59     39     36     59
D234V5, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            2             60
  CLUS_2            0             59
  CLUS_3            1             39
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        2      0      2
  IDH2 WILD-TYPE    104     54     95
D234V6, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            0             54
  CLUS_3            2             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        3      0      1
  IDH2 WILD-TYPE    120     95     70
D234V7, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            3            120
  CLUS_2            0             95
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        3      1      0
  IDH2 WILD-TYPE    154     62     69
D234V8, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            3            154
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IDH2 MUTATED        1      0      1      0      1      0
  IDH2 WILD-TYPE     32     19     58     39     15     45
D234V9, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             19
  CLUS_3            1             58
  CLUS_4            0             39
  CLUS_5            1             15
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IDH2 MUTATED        1      0      1      1      0      0
  IDH2 WILD-TYPE     46     39     34     31     23     35
D234V10, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            1             46
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            1             31
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(235) Variable = PIGO MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGO MUTATED        0      9      0      0      1
  PIGO WILD-TYPE     79    117     27     43     11
D235V1, multiclass
        clus
vv       PIGO MUTATED PIGO WILD-TYPE
  CLUS_1            0             79
  CLUS_2            9            117
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGO MUTATED        0      9      1      0
  PIGO WILD-TYPE     71     67     33     63
D235V2, multiclass
        clus
vv       PIGO MUTATED PIGO WILD-TYPE
  CLUS_1            0             71
  CLUS_2            9             67
  CLUS_3            1             33
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGO MUTATED        0      3      2      0      4
  PIGO WILD-TYPE     16     59     49     65     51
D235V3, multiclass
        clus
vv       PIGO MUTATED PIGO WILD-TYPE
  CLUS_1            0             16
  CLUS_2            3             59
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            4             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGO MUTATED        2      5      2      0
  PIGO WILD-TYPE     96     39     48     57
D235V4, multiclass
        clus
vv       PIGO MUTATED PIGO WILD-TYPE
  CLUS_1            2             96
  CLUS_2            5             39
  CLUS_3            2             48
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGO MUTATED        6      1      1      0      0
  PIGO WILD-TYPE     56     58     39     37     59
D235V5, multiclass
        clus
vv       PIGO MUTATED PIGO WILD-TYPE
  CLUS_1            6             56
  CLUS_2            1             58
  CLUS_3            1             39
  CLUS_4            0             37
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGO MUTATED        1      1      6
  PIGO WILD-TYPE    105     53     91
D235V6, multiclass
        clus
vv       PIGO MUTATED PIGO WILD-TYPE
  CLUS_1            1            105
  CLUS_2            1             53
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGO MUTATED        6      2      2
  PIGO WILD-TYPE    117     93     69
D235V7, multiclass
        clus
vv       PIGO MUTATED PIGO WILD-TYPE
  CLUS_1            6            117
  CLUS_2            2             93
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGO MUTATED        9      1      0
  PIGO WILD-TYPE    148     62     69
D235V8, multiclass
        clus
vv       PIGO MUTATED PIGO WILD-TYPE
  CLUS_1            9            148
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIGO MUTATED        2      0      2      3      0      1
  PIGO WILD-TYPE     31     19     57     36     16     44
D235V9, multiclass
        clus
vv       PIGO MUTATED PIGO WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             19
  CLUS_3            2             57
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIGO MUTATED        3      1      2      2      0      0
  PIGO WILD-TYPE     44     38     33     30     23     35
D235V10, multiclass
        clus
vv       PIGO MUTATED PIGO WILD-TYPE
  CLUS_1            3             44
  CLUS_2            1             38
  CLUS_3            2             33
  CLUS_4            2             30
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(236) Variable = MASTL MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MASTL MUTATED        0      8      2      1      0
  MASTL WILD-TYPE     79    118     25     42     12
D236V1, multiclass
        clus
vv       MASTL MUTATED MASTL WILD-TYPE
  CLUS_1             0              79
  CLUS_2             8             118
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MASTL MUTATED        0      5      3      2
  MASTL WILD-TYPE     71     71     31     61
D236V2, multiclass
        clus
vv       MASTL MUTATED MASTL WILD-TYPE
  CLUS_1             0              71
  CLUS_2             5              71
  CLUS_3             3              31
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MASTL MUTATED        1      2      4      1      3
  MASTL WILD-TYPE     15     60     47     64     52
D236V3, multiclass
        clus
vv       MASTL MUTATED MASTL WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              60
  CLUS_3             4              47
  CLUS_4             1              64
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MASTL MUTATED        3      4      2      2
  MASTL WILD-TYPE     95     40     48     55
D236V4, multiclass
        clus
vv       MASTL MUTATED MASTL WILD-TYPE
  CLUS_1             3              95
  CLUS_2             4              40
  CLUS_3             2              48
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MASTL MUTATED        7      1      1      1      0
  MASTL WILD-TYPE     55     58     39     36     59
D236V5, multiclass
        clus
vv       MASTL MUTATED MASTL WILD-TYPE
  CLUS_1             7              55
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MASTL MUTATED        5      0      5
  MASTL WILD-TYPE    101     54     92
D236V6, multiclass
        clus
vv       MASTL MUTATED MASTL WILD-TYPE
  CLUS_1             5             101
  CLUS_2             0              54
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MASTL MUTATED        9      2      0
  MASTL WILD-TYPE    114     93     71
D236V7, multiclass
        clus
vv       MASTL MUTATED MASTL WILD-TYPE
  CLUS_1             9             114
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MASTL MUTATED        9      1      1
  MASTL WILD-TYPE    148     62     68
D236V8, multiclass
        clus
vv       MASTL MUTATED MASTL WILD-TYPE
  CLUS_1             9             148
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MASTL MUTATED        1      1      6      1      1      0
  MASTL WILD-TYPE     32     18     53     38     15     45
D236V9, multiclass
        clus
vv       MASTL MUTATED MASTL WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             6              53
  CLUS_4             1              38
  CLUS_5             1              15
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MASTL MUTATED        1      0      5      2      1      1
  MASTL WILD-TYPE     46     39     30     30     22     34
D236V10, multiclass
        clus
vv       MASTL MUTATED MASTL WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              39
  CLUS_3             5              30
  CLUS_4             2              30
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(237) Variable = RNF111 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF111 MUTATED        0      9      0      1      0
  RNF111 WILD-TYPE     79    117     27     42     12
D237V1, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              9              117
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF111 MUTATED        0      4      0      1
  RNF111 WILD-TYPE     71     72     34     62
D237V2, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              4               72
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF111 MUTATED        1      3      2      0      4
  RNF111 WILD-TYPE     15     59     49     65     51
D237V3, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              3               59
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              4               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF111 MUTATED        2      6      1      1
  RNF111 WILD-TYPE     96     38     49     56
D237V4, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              6               38
  CLUS_3              1               49
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF111 MUTATED        3      2      1      3      0
  RNF111 WILD-TYPE     59     57     39     34     59
D237V5, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              2               57
  CLUS_3              1               39
  CLUS_4              3               34
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF111 MUTATED        3      1      5
  RNF111 WILD-TYPE    103     53     92
D237V6, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              1               53
  CLUS_3              5               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF111 MUTATED        8      1      1
  RNF111 WILD-TYPE    115     94     70
D237V7, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              8              115
  CLUS_2              1               94
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF111 MUTATED        8      1      1
  RNF111 WILD-TYPE    149     62     68
D237V8, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              8              149
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RNF111 MUTATED        1      1      2      0      0      1
  RNF111 WILD-TYPE     32     18     57     39     16     44
D237V9, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RNF111 MUTATED        0      0      2      2      1      0
  RNF111 WILD-TYPE     47     39     33     30     22     35
D237V10, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              0               47
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              2               30
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(238) Variable = KIAA0406 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0406 MUTATED        1      8      1      2      0
  KIAA0406 WILD-TYPE     78    118     26     41     12
D238V1, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                1                 78
  CLUS_2                8                118
  CLUS_3                1                 26
  CLUS_4                2                 41
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0406 MUTATED        1      7      1      0
  KIAA0406 WILD-TYPE     70     69     33     63
D238V2, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                1                 70
  CLUS_2                7                 69
  CLUS_3                1                 33
  CLUS_4                0                 63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0406 MUTATED        0      3      2      3      3
  KIAA0406 WILD-TYPE     16     59     49     62     52
D238V3, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                3                 59
  CLUS_3                2                 49
  CLUS_4                3                 62
  CLUS_5                3                 52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0406 MUTATED        1      7      1      2
  KIAA0406 WILD-TYPE     97     37     49     55
D238V4, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                1                 97
  CLUS_2                7                 37
  CLUS_3                1                 49
  CLUS_4                2                 55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0406 MUTATED        6      1      1      1      2
  KIAA0406 WILD-TYPE     56     58     39     36     57
D238V5, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                6                 56
  CLUS_2                1                 58
  CLUS_3                1                 39
  CLUS_4                1                 36
  CLUS_5                2                 57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0406 MUTATED        3      1      7
  KIAA0406 WILD-TYPE    103     53     90
D238V6, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                3                103
  CLUS_2                1                 53
  CLUS_3                7                 90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0406 MUTATED        9      2      1
  KIAA0406 WILD-TYPE    114     93     70
D238V7, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                9                114
  CLUS_2                2                 93
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0406 MUTATED       11      1      0
  KIAA0406 WILD-TYPE    146     62     69
D238V8, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1               11                146
  CLUS_2                1                 62
  CLUS_3                0                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0406 MUTATED        3      3      1      1      0      0
  KIAA0406 WILD-TYPE     30     16     58     38     16     45
D238V9, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                3                 30
  CLUS_2                3                 16
  CLUS_3                1                 58
  CLUS_4                1                 38
  CLUS_5                0                 16
  CLUS_6                0                 45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0406 MUTATED        5      0      1      1      1      0
  KIAA0406 WILD-TYPE     42     39     34     31     22     35
D238V10, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                5                 42
  CLUS_2                0                 39
  CLUS_3                1                 34
  CLUS_4                1                 31
  CLUS_5                1                 22
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(239) Variable = SF3B2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SF3B2 MUTATED        1     14      2      0      0
  SF3B2 WILD-TYPE     78    112     25     43     12
D239V1, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             1              78
  CLUS_2            14             112
  CLUS_3             2              25
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF3B2 MUTATED        1      8      2      3
  SF3B2 WILD-TYPE     70     68     32     60
D239V2, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             8              68
  CLUS_3             2              32
  CLUS_4             3              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SF3B2 MUTATED        3      4      2      1      4
  SF3B2 WILD-TYPE     13     58     49     64     51
D239V3, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             3              13
  CLUS_2             4              58
  CLUS_3             2              49
  CLUS_4             1              64
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF3B2 MUTATED        4      7      2      1
  SF3B2 WILD-TYPE     94     37     48     56
D239V4, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             4              94
  CLUS_2             7              37
  CLUS_3             2              48
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SF3B2 MUTATED       10      1      1      2      0
  SF3B2 WILD-TYPE     52     58     39     35     59
D239V5, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1            10              52
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SF3B2 MUTATED        4      1      9
  SF3B2 WILD-TYPE    102     53     88
D239V6, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             1              53
  CLUS_3             9              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SF3B2 MUTATED       13      3      1
  SF3B2 WILD-TYPE    110     92     70
D239V7, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1            13             110
  CLUS_2             3              92
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SF3B2 MUTATED       14      2      1
  SF3B2 WILD-TYPE    143     61     68
D239V8, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1            14             143
  CLUS_2             2              61
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SF3B2 MUTATED        1      2      6      3      0      1
  SF3B2 WILD-TYPE     32     17     53     36     16     44
D239V9, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              17
  CLUS_3             6              53
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SF3B2 MUTATED        6      1      3      2      1      0
  SF3B2 WILD-TYPE     41     38     32     30     22     35
D239V10, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             6              41
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             2              30
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(240) Variable = SBNO1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SBNO1 MUTATED        1     10      3      2      1
  SBNO1 WILD-TYPE     78    116     24     41     11
D240V1, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             1              78
  CLUS_2            10             116
  CLUS_3             3              24
  CLUS_4             2              41
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBNO1 MUTATED        1     11      2      2
  SBNO1 WILD-TYPE     70     65     32     61
D240V2, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             1              70
  CLUS_2            11              65
  CLUS_3             2              32
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SBNO1 MUTATED        1      4      7      0      5
  SBNO1 WILD-TYPE     15     58     44     65     50
D240V3, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             4              58
  CLUS_3             7              44
  CLUS_4             0              65
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBNO1 MUTATED        5      8      3      1
  SBNO1 WILD-TYPE     93     36     47     56
D240V4, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             5              93
  CLUS_2             8              36
  CLUS_3             3              47
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SBNO1 MUTATED        9      1      2      4      0
  SBNO1 WILD-TYPE     53     58     38     33     59
D240V5, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             9              53
  CLUS_2             1              58
  CLUS_3             2              38
  CLUS_4             4              33
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SBNO1 MUTATED        2      1     13
  SBNO1 WILD-TYPE    104     53     84
D240V6, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              53
  CLUS_3            13              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SBNO1 MUTATED       13      2      2
  SBNO1 WILD-TYPE    110     93     69
D240V7, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1            13             110
  CLUS_2             2              93
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SBNO1 MUTATED       15      2      0
  SBNO1 WILD-TYPE    142     61     69
D240V8, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1            15             142
  CLUS_2             2              61
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SBNO1 MUTATED        1      3      4      5      0      1
  SBNO1 WILD-TYPE     32     16     55     34     16     44
D240V9, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             3              16
  CLUS_3             4              55
  CLUS_4             5              34
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SBNO1 MUTATED        6      1      4      1      2      0
  SBNO1 WILD-TYPE     41     38     31     31     21     35
D240V10, multiclass
        clus
vv       SBNO1 MUTATED SBNO1 WILD-TYPE
  CLUS_1             6              41
  CLUS_2             1              38
  CLUS_3             4              31
  CLUS_4             1              31
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(241) Variable = POP1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POP1 MUTATED        3     11      1      3      0
  POP1 WILD-TYPE     76    115     26     40     12
D241V1, multiclass
        clus
vv       POP1 MUTATED POP1 WILD-TYPE
  CLUS_1            3             76
  CLUS_2           11            115
  CLUS_3            1             26
  CLUS_4            3             40
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POP1 MUTATED        1      6      3      3
  POP1 WILD-TYPE     70     70     31     60
D241V2, multiclass
        clus
vv       POP1 MUTATED POP1 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            6             70
  CLUS_3            3             31
  CLUS_4            3             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POP1 MUTATED        2      9      2      2      2
  POP1 WILD-TYPE     14     53     49     63     53
D241V3, multiclass
        clus
vv       POP1 MUTATED POP1 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            9             53
  CLUS_3            2             49
  CLUS_4            2             63
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POP1 MUTATED        3      8      4      2
  POP1 WILD-TYPE     95     36     46     55
D241V4, multiclass
        clus
vv       POP1 MUTATED POP1 WILD-TYPE
  CLUS_1            3             95
  CLUS_2            8             36
  CLUS_3            4             46
  CLUS_4            2             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POP1 MUTATED       10      2      1      1      3
  POP1 WILD-TYPE     52     57     39     36     56
D241V5, multiclass
        clus
vv       POP1 MUTATED POP1 WILD-TYPE
  CLUS_1           10             52
  CLUS_2            2             57
  CLUS_3            1             39
  CLUS_4            1             36
  CLUS_5            3             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POP1 MUTATED        7      0     10
  POP1 WILD-TYPE     99     54     87
D241V6, multiclass
        clus
vv       POP1 MUTATED POP1 WILD-TYPE
  CLUS_1            7             99
  CLUS_2            0             54
  CLUS_3           10             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POP1 MUTATED       16      1      2
  POP1 WILD-TYPE    107     94     69
D241V7, multiclass
        clus
vv       POP1 MUTATED POP1 WILD-TYPE
  CLUS_1           16            107
  CLUS_2            1             94
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POP1 MUTATED       15      0      4
  POP1 WILD-TYPE    142     63     65
D241V8, multiclass
        clus
vv       POP1 MUTATED POP1 WILD-TYPE
  CLUS_1           15            142
  CLUS_2            0             63
  CLUS_3            4             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  POP1 MUTATED        2      2      3      3      2      0
  POP1 WILD-TYPE     31     17     56     36     14     45
D241V9, multiclass
        clus
vv       POP1 MUTATED POP1 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            2             17
  CLUS_3            3             56
  CLUS_4            3             36
  CLUS_5            2             14
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  POP1 MUTATED        4      0      3      2      1      2
  POP1 WILD-TYPE     43     39     32     30     22     33
D241V10, multiclass
        clus
vv       POP1 MUTATED POP1 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            0             39
  CLUS_3            3             32
  CLUS_4            2             30
  CLUS_5            1             22
  CLUS_6            2             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(242) Variable = FZD3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FZD3 MUTATED        1      9      0      0      0
  FZD3 WILD-TYPE     78    117     27     43     12
D242V1, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            1             78
  CLUS_2            9            117
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FZD3 MUTATED        0      6      1      1
  FZD3 WILD-TYPE     71     70     33     62
D242V2, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            6             70
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FZD3 MUTATED        0      5      2      1      1
  FZD3 WILD-TYPE     16     57     49     64     54
D242V3, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            5             57
  CLUS_3            2             49
  CLUS_4            1             64
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FZD3 MUTATED        2      4      3      0
  FZD3 WILD-TYPE     96     40     47     57
D242V4, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            4             40
  CLUS_3            3             47
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FZD3 MUTATED        3      1      0      2      1
  FZD3 WILD-TYPE     59     58     40     35     58
D242V5, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            3             59
  CLUS_2            1             58
  CLUS_3            0             40
  CLUS_4            2             35
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FZD3 MUTATED        3      1      3
  FZD3 WILD-TYPE    103     53     94
D242V6, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            3            103
  CLUS_2            1             53
  CLUS_3            3             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FZD3 MUTATED        9      1      0
  FZD3 WILD-TYPE    114     94     71
D242V7, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            9            114
  CLUS_2            1             94
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FZD3 MUTATED        9      1      0
  FZD3 WILD-TYPE    148     62     69
D242V8, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            9            148
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FZD3 MUTATED        2      1      3      2      0      0
  FZD3 WILD-TYPE     31     18     56     37     16     45
D242V9, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             18
  CLUS_3            3             56
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FZD3 MUTATED        3      0      2      1      2      0
  FZD3 WILD-TYPE     44     39     33     31     21     35
D242V10, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            0             39
  CLUS_3            2             33
  CLUS_4            1             31
  CLUS_5            2             21
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(243) Variable = RING1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RING1 MUTATED        1      5      0      1      1
  RING1 WILD-TYPE     78    121     27     42     11
D243V1, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             5             121
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RING1 MUTATED        0      3      1      2
  RING1 WILD-TYPE     71     73     33     61
D243V2, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             3              73
  CLUS_3             1              33
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RING1 MUTATED        1      3      3      1      0
  RING1 WILD-TYPE     15     59     48     64     55
D243V3, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3              59
  CLUS_3             3              48
  CLUS_4             1              64
  CLUS_5             0              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RING1 MUTATED        2      3      2      1
  RING1 WILD-TYPE     96     41     48     56
D243V4, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             3              41
  CLUS_3             2              48
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RING1 MUTATED        5      2      0      0      0
  RING1 WILD-TYPE     57     57     40     37     59
D243V5, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             2              57
  CLUS_3             0              40
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RING1 MUTATED        4      0      3
  RING1 WILD-TYPE    102     54     94
D243V6, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RING1 MUTATED        7      0      1
  RING1 WILD-TYPE    116     95     70
D243V7, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             7             116
  CLUS_2             0              95
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RING1 MUTATED        7      0      1
  RING1 WILD-TYPE    150     63     68
D243V8, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             7             150
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RING1 MUTATED        0      0      5      0      0      0
  RING1 WILD-TYPE     33     19     54     39     16     45
D243V9, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              19
  CLUS_3             5              54
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RING1 MUTATED        0      0      3      1      0      1
  RING1 WILD-TYPE     47     39     32     31     23     34
D243V10, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             0              39
  CLUS_3             3              32
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(244) Variable = PIK3R3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3R3 MUTATED        0      6      1      0      1
  PIK3R3 WILD-TYPE     79    120     26     43     11
D244V1, multiclass
        clus
vv       PIK3R3 MUTATED PIK3R3 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              6              120
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R3 MUTATED        0      4      1      1
  PIK3R3 WILD-TYPE     71     72     33     62
D244V2, multiclass
        clus
vv       PIK3R3 MUTATED PIK3R3 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              4               72
  CLUS_3              1               33
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3R3 MUTATED        0      2      1      2      2
  PIK3R3 WILD-TYPE     16     60     50     63     53
D244V3, multiclass
        clus
vv       PIK3R3 MUTATED PIK3R3 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              2               60
  CLUS_3              1               50
  CLUS_4              2               63
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R3 MUTATED        3      1      2      1
  PIK3R3 WILD-TYPE     95     43     48     56
D244V4, multiclass
        clus
vv       PIK3R3 MUTATED PIK3R3 WILD-TYPE
  CLUS_1              3               95
  CLUS_2              1               43
  CLUS_3              2               48
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3R3 MUTATED        5      1      0      1      0
  PIK3R3 WILD-TYPE     57     58     40     36     59
D244V5, multiclass
        clus
vv       PIK3R3 MUTATED PIK3R3 WILD-TYPE
  CLUS_1              5               57
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R3 MUTATED        2      2      3
  PIK3R3 WILD-TYPE    104     52     94
D244V6, multiclass
        clus
vv       PIK3R3 MUTATED PIK3R3 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              2               52
  CLUS_3              3               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R3 MUTATED        5      2      1
  PIK3R3 WILD-TYPE    118     93     70
D244V7, multiclass
        clus
vv       PIK3R3 MUTATED PIK3R3 WILD-TYPE
  CLUS_1              5              118
  CLUS_2              2               93
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R3 MUTATED        7      1      0
  PIK3R3 WILD-TYPE    150     62     69
D244V8, multiclass
        clus
vv       PIK3R3 MUTATED PIK3R3 WILD-TYPE
  CLUS_1              7              150
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIK3R3 MUTATED        1      1      1      1      1      0
  PIK3R3 WILD-TYPE     32     18     58     38     15     45
D244V9, multiclass
        clus
vv       PIK3R3 MUTATED PIK3R3 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              1               58
  CLUS_4              1               38
  CLUS_5              1               15
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIK3R3 MUTATED        1      0      1      1      2      0
  PIK3R3 WILD-TYPE     46     39     34     31     21     35
D244V10, multiclass
        clus
vv       PIK3R3 MUTATED PIK3R3 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              1               31
  CLUS_5              2               21
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(245) Variable = PCGF3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCGF3 MUTATED        0      5      1      0      0
  PCGF3 WILD-TYPE     79    121     26     43     12
D245V1, multiclass
        clus
vv       PCGF3 MUTATED PCGF3 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             5             121
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCGF3 MUTATED        0      5      1      0
  PCGF3 WILD-TYPE     71     71     33     63
D245V2, multiclass
        clus
vv       PCGF3 MUTATED PCGF3 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             5              71
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCGF3 MUTATED        0      1      2      0      2
  PCGF3 WILD-TYPE     16     61     49     65     53
D245V3, multiclass
        clus
vv       PCGF3 MUTATED PCGF3 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              61
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCGF3 MUTATED        0      4      1      0
  PCGF3 WILD-TYPE     98     40     49     57
D245V4, multiclass
        clus
vv       PCGF3 MUTATED PCGF3 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             4              40
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCGF3 MUTATED        2      0      0      3      0
  PCGF3 WILD-TYPE     60     59     40     34     59
D245V5, multiclass
        clus
vv       PCGF3 MUTATED PCGF3 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCGF3 MUTATED        0      0      5
  PCGF3 WILD-TYPE    106     54     92
D245V6, multiclass
        clus
vv       PCGF3 MUTATED PCGF3 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              54
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCGF3 MUTATED        6      0      0
  PCGF3 WILD-TYPE    117     95     71
D245V7, multiclass
        clus
vv       PCGF3 MUTATED PCGF3 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCGF3 MUTATED        6      0      0
  PCGF3 WILD-TYPE    151     63     69
D245V8, multiclass
        clus
vv       PCGF3 MUTATED PCGF3 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PCGF3 MUTATED        1      3      1      1      0      0
  PCGF3 WILD-TYPE     32     16     58     38     16     45
D245V9, multiclass
        clus
vv       PCGF3 MUTATED PCGF3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             3              16
  CLUS_3             1              58
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PCGF3 MUTATED        3      0      0      2      1      0
  PCGF3 WILD-TYPE     44     39     35     30     22     35
D245V10, multiclass
        clus
vv       PCGF3 MUTATED PCGF3 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             0              35
  CLUS_4             2              30
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(246) Variable = ZNF608 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF608 MUTATED        0     13      0      0      1
  ZNF608 WILD-TYPE     79    113     27     43     11
D246V1, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              0               79
  CLUS_2             13              113
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF608 MUTATED        0      8      1      0
  ZNF608 WILD-TYPE     71     68     33     63
D246V2, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              8               68
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF608 MUTATED        0      5      4      1      4
  ZNF608 WILD-TYPE     16     57     47     64     51
D246V3, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              5               57
  CLUS_3              4               47
  CLUS_4              1               64
  CLUS_5              4               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF608 MUTATED        1      7      4      2
  ZNF608 WILD-TYPE     97     37     46     55
D246V4, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              7               37
  CLUS_3              4               46
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF608 MUTATED        8      3      1      0      0
  ZNF608 WILD-TYPE     54     56     39     37     59
D246V5, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              8               54
  CLUS_2              3               56
  CLUS_3              1               39
  CLUS_4              0               37
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF608 MUTATED        2      2      8
  ZNF608 WILD-TYPE    104     52     89
D246V6, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              2               52
  CLUS_3              8               89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF608 MUTATED       12      1      2
  ZNF608 WILD-TYPE    111     94     69
D246V7, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1             12              111
  CLUS_2              1               94
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF608 MUTATED       13      1      1
  ZNF608 WILD-TYPE    144     62     68
D246V8, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1             13              144
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF608 MUTATED        3      1      3      2      0      0
  ZNF608 WILD-TYPE     30     18     56     37     16     45
D246V9, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              1               18
  CLUS_3              3               56
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF608 MUTATED        3      0      3      2      1      0
  ZNF608 WILD-TYPE     44     39     32     30     22     35
D246V10, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              2               30
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(247) Variable = SYNJ2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNJ2 MUTATED        1     14      1      1      0
  SYNJ2 WILD-TYPE     78    112     26     42     12
D247V1, multiclass
        clus
vv       SYNJ2 MUTATED SYNJ2 WILD-TYPE
  CLUS_1             1              78
  CLUS_2            14             112
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNJ2 MUTATED        2      8      2      2
  SYNJ2 WILD-TYPE     69     68     32     61
D247V2, multiclass
        clus
vv       SYNJ2 MUTATED SYNJ2 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             8              68
  CLUS_3             2              32
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNJ2 MUTATED        2      7      3      0      3
  SYNJ2 WILD-TYPE     14     55     48     65     52
D247V3, multiclass
        clus
vv       SYNJ2 MUTATED SYNJ2 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             7              55
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNJ2 MUTATED        3      6      5      1
  SYNJ2 WILD-TYPE     95     38     45     56
D247V4, multiclass
        clus
vv       SYNJ2 MUTATED SYNJ2 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             6              38
  CLUS_3             5              45
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNJ2 MUTATED        6      1      4      4      0
  SYNJ2 WILD-TYPE     56     58     36     33     59
D247V5, multiclass
        clus
vv       SYNJ2 MUTATED SYNJ2 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             1              58
  CLUS_3             4              36
  CLUS_4             4              33
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYNJ2 MUTATED        4      1     10
  SYNJ2 WILD-TYPE    102     53     87
D247V6, multiclass
        clus
vv       SYNJ2 MUTATED SYNJ2 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             1              53
  CLUS_3            10              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYNJ2 MUTATED       14      2      1
  SYNJ2 WILD-TYPE    109     93     70
D247V7, multiclass
        clus
vv       SYNJ2 MUTATED SYNJ2 WILD-TYPE
  CLUS_1            14             109
  CLUS_2             2              93
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYNJ2 MUTATED       14      2      1
  SYNJ2 WILD-TYPE    143     61     68
D247V8, multiclass
        clus
vv       SYNJ2 MUTATED SYNJ2 WILD-TYPE
  CLUS_1            14             143
  CLUS_2             2              61
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SYNJ2 MUTATED        1      3      7      1      0      1
  SYNJ2 WILD-TYPE     32     16     52     38     16     44
D247V9, multiclass
        clus
vv       SYNJ2 MUTATED SYNJ2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             3              16
  CLUS_3             7              52
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SYNJ2 MUTATED        6      1      5      0      1      0
  SYNJ2 WILD-TYPE     41     38     30     32     22     35
D247V10, multiclass
        clus
vv       SYNJ2 MUTATED SYNJ2 WILD-TYPE
  CLUS_1             6              41
  CLUS_2             1              38
  CLUS_3             5              30
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(248) Variable = GATA3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GATA3 MUTATED        1     12      2      1      0
  GATA3 WILD-TYPE     78    114     25     42     12
D248V1, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             1              78
  CLUS_2            12             114
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA3 MUTATED        2      6      4      1
  GATA3 WILD-TYPE     69     70     30     62
D248V2, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             6              70
  CLUS_3             4              30
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GATA3 MUTATED        0      4      6      1      3
  GATA3 WILD-TYPE     16     58     45     64     52
D248V3, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             4              58
  CLUS_3             6              45
  CLUS_4             1              64
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA3 MUTATED        2      6      3      3
  GATA3 WILD-TYPE     96     38     47     54
D248V4, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             6              38
  CLUS_3             3              47
  CLUS_4             3              54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GATA3 MUTATED        8      2      1      2      1
  GATA3 WILD-TYPE     54     57     39     35     58
D248V5, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             8              54
  CLUS_2             2              57
  CLUS_3             1              39
  CLUS_4             2              35
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GATA3 MUTATED        3      1     10
  GATA3 WILD-TYPE    103     53     87
D248V6, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             1              53
  CLUS_3            10              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GATA3 MUTATED       10      5      1
  GATA3 WILD-TYPE    113     90     70
D248V7, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1            10             113
  CLUS_2             5              90
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GATA3 MUTATED       12      3      1
  GATA3 WILD-TYPE    145     60     68
D248V8, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1            12             145
  CLUS_2             3              60
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GATA3 MUTATED        2      1      3      4      0      3
  GATA3 WILD-TYPE     31     18     56     35     16     42
D248V9, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              18
  CLUS_3             3              56
  CLUS_4             4              35
  CLUS_5             0              16
  CLUS_6             3              42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GATA3 MUTATED        2      2      2      2      4      1
  GATA3 WILD-TYPE     45     37     33     30     19     34
D248V10, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             2              37
  CLUS_3             2              33
  CLUS_4             2              30
  CLUS_5             4              19
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(249) Variable = NFE2L1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFE2L1 MUTATED        1      7      0      1      0
  NFE2L1 WILD-TYPE     78    119     27     42     12
D249V1, multiclass
        clus
vv       NFE2L1 MUTATED NFE2L1 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              7              119
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L1 MUTATED        1      3      0      1
  NFE2L1 WILD-TYPE     70     73     34     62
D249V2, multiclass
        clus
vv       NFE2L1 MUTATED NFE2L1 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              3               73
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFE2L1 MUTATED        1      3      2      0      1
  NFE2L1 WILD-TYPE     15     59     49     65     54
D249V3, multiclass
        clus
vv       NFE2L1 MUTATED NFE2L1 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              3               59
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L1 MUTATED        3      2      2      0
  NFE2L1 WILD-TYPE     95     42     48     57
D249V4, multiclass
        clus
vv       NFE2L1 MUTATED NFE2L1 WILD-TYPE
  CLUS_1              3               95
  CLUS_2              2               42
  CLUS_3              2               48
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFE2L1 MUTATED        4      0      3      1      1
  NFE2L1 WILD-TYPE     58     59     37     36     58
D249V5, multiclass
        clus
vv       NFE2L1 MUTATED NFE2L1 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              0               59
  CLUS_3              3               37
  CLUS_4              1               36
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L1 MUTATED        2      0      7
  NFE2L1 WILD-TYPE    104     54     90
D249V6, multiclass
        clus
vv       NFE2L1 MUTATED NFE2L1 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              0               54
  CLUS_3              7               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L1 MUTATED        7      1      1
  NFE2L1 WILD-TYPE    116     94     70
D249V7, multiclass
        clus
vv       NFE2L1 MUTATED NFE2L1 WILD-TYPE
  CLUS_1              7              116
  CLUS_2              1               94
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L1 MUTATED        8      0      1
  NFE2L1 WILD-TYPE    149     63     68
D249V8, multiclass
        clus
vv       NFE2L1 MUTATED NFE2L1 WILD-TYPE
  CLUS_1              8              149
  CLUS_2              0               63
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NFE2L1 MUTATED        0      1      1      2      0      0
  NFE2L1 WILD-TYPE     33     18     58     37     16     45
D249V9, multiclass
        clus
vv       NFE2L1 MUTATED NFE2L1 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               18
  CLUS_3              1               58
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NFE2L1 MUTATED        3      0      0      0      0      1
  NFE2L1 WILD-TYPE     44     39     35     32     23     34
D249V10, multiclass
        clus
vv       NFE2L1 MUTATED NFE2L1 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              0               35
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(250) Variable = SERPINB12 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINB12 MUTATED        2      4      1      0      0
  SERPINB12 WILD-TYPE     77    122     26     43     12
D250V1, multiclass
        clus
vv       SERPINB12 MUTATED SERPINB12 WILD-TYPE
  CLUS_1                 2                  77
  CLUS_2                 4                 122
  CLUS_3                 1                  26
  CLUS_4                 0                  43
  CLUS_5                 0                  12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB12 MUTATED        1      3      0      1
  SERPINB12 WILD-TYPE     70     73     34     62
D250V2, multiclass
        clus
vv       SERPINB12 MUTATED SERPINB12 WILD-TYPE
  CLUS_1                 1                  70
  CLUS_2                 3                  73
  CLUS_3                 0                  34
  CLUS_4                 1                  62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINB12 MUTATED        1      1      1      0      1
  SERPINB12 WILD-TYPE     15     61     50     65     54
D250V3, multiclass
        clus
vv       SERPINB12 MUTATED SERPINB12 WILD-TYPE
  CLUS_1                 1                  15
  CLUS_2                 1                  61
  CLUS_3                 1                  50
  CLUS_4                 0                  65
  CLUS_5                 1                  54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB12 MUTATED        2      2      0      0
  SERPINB12 WILD-TYPE     96     42     50     57
D250V4, multiclass
        clus
vv       SERPINB12 MUTATED SERPINB12 WILD-TYPE
  CLUS_1                 2                  96
  CLUS_2                 2                  42
  CLUS_3                 0                  50
  CLUS_4                 0                  57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINB12 MUTATED        4      0      0      2      1
  SERPINB12 WILD-TYPE     58     59     40     35     58
D250V5, multiclass
        clus
vv       SERPINB12 MUTATED SERPINB12 WILD-TYPE
  CLUS_1                 4                  58
  CLUS_2                 0                  59
  CLUS_3                 0                  40
  CLUS_4                 2                  35
  CLUS_5                 1                  58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  SERPINB12 MUTATED        1      0      6
  SERPINB12 WILD-TYPE    105     54     91
D250V6, multiclass
        clus
vv       SERPINB12 MUTATED SERPINB12 WILD-TYPE
  CLUS_1                 1                 105
  CLUS_2                 0                  54
  CLUS_3                 6                  91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  SERPINB12 MUTATED        6      0      1
  SERPINB12 WILD-TYPE    117     95     70
D250V7, multiclass
        clus
vv       SERPINB12 MUTATED SERPINB12 WILD-TYPE
  CLUS_1                 6                 117
  CLUS_2                 0                  95
  CLUS_3                 1                  70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  SERPINB12 MUTATED        6      0      1
  SERPINB12 WILD-TYPE    151     63     68
D250V8, multiclass
        clus
vv       SERPINB12 MUTATED SERPINB12 WILD-TYPE
  CLUS_1                 6                 151
  CLUS_2                 0                  63
  CLUS_3                 1                  68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SERPINB12 MUTATED        1      1      1      2      0      0
  SERPINB12 WILD-TYPE     32     18     58     37     16     45
D250V9, multiclass
        clus
vv       SERPINB12 MUTATED SERPINB12 WILD-TYPE
  CLUS_1                 1                  32
  CLUS_2                 1                  18
  CLUS_3                 1                  58
  CLUS_4                 2                  37
  CLUS_5                 0                  16
  CLUS_6                 0                  45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SERPINB12 MUTATED        3      0      1      1      0      0
  SERPINB12 WILD-TYPE     44     39     34     31     23     35
D250V10, multiclass
        clus
vv       SERPINB12 MUTATED SERPINB12 WILD-TYPE
  CLUS_1                 3                  44
  CLUS_2                 0                  39
  CLUS_3                 1                  34
  CLUS_4                 1                  31
  CLUS_5                 0                  23
  CLUS_6                 0                  35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(251) Variable = GPR141 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR141 MUTATED        0      7      0      2      0
  GPR141 WILD-TYPE     79    119     27     41     12
D251V1, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              7              119
  CLUS_3              0               27
  CLUS_4              2               41
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR141 MUTATED        0      5      2      1
  GPR141 WILD-TYPE     71     71     32     62
D251V2, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              5               71
  CLUS_3              2               32
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR141 MUTATED        0      3      3      1      2
  GPR141 WILD-TYPE     16     59     48     64     53
D251V3, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              3               59
  CLUS_3              3               48
  CLUS_4              1               64
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR141 MUTATED        0      6      1      2
  GPR141 WILD-TYPE     98     38     49     55
D251V4, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              6               38
  CLUS_3              1               49
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR141 MUTATED        5      1      0      2      0
  GPR141 WILD-TYPE     57     58     40     35     59
D251V5, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              5               57
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              2               35
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR141 MUTATED        3      1      4
  GPR141 WILD-TYPE    103     53     93
D251V6, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              1               53
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR141 MUTATED        8      1      0
  GPR141 WILD-TYPE    115     94     71
D251V7, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              8              115
  CLUS_2              1               94
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR141 MUTATED        8      1      0
  GPR141 WILD-TYPE    149     62     69
D251V8, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              8              149
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR141 MUTATED        0      1      4      1      0      1
  GPR141 WILD-TYPE     33     18     55     38     16     44
D251V9, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               18
  CLUS_3              4               55
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR141 MUTATED        1      1      1      2      2      0
  GPR141 WILD-TYPE     46     38     34     30     21     35
D251V10, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              1               38
  CLUS_3              1               34
  CLUS_4              2               30
  CLUS_5              2               21
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(252) Variable = ART1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ART1 MUTATED        1      6      0      0      0
  ART1 WILD-TYPE     78    120     27     43     12
D252V1, multiclass
        clus
vv       ART1 MUTATED ART1 WILD-TYPE
  CLUS_1            1             78
  CLUS_2            6            120
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ART1 MUTATED        1      3      1      0
  ART1 WILD-TYPE     70     73     33     63
D252V2, multiclass
        clus
vv       ART1 MUTATED ART1 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            3             73
  CLUS_3            1             33
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ART1 MUTATED        1      3      1      0      0
  ART1 WILD-TYPE     15     59     50     65     55
D252V3, multiclass
        clus
vv       ART1 MUTATED ART1 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            3             59
  CLUS_3            1             50
  CLUS_4            0             65
  CLUS_5            0             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ART1 MUTATED        1      3      1      0
  ART1 WILD-TYPE     97     41     49     57
D252V4, multiclass
        clus
vv       ART1 MUTATED ART1 WILD-TYPE
  CLUS_1            1             97
  CLUS_2            3             41
  CLUS_3            1             49
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ART1 MUTATED        3      0      0      3      1
  ART1 WILD-TYPE     59     59     40     34     58
D252V5, multiclass
        clus
vv       ART1 MUTATED ART1 WILD-TYPE
  CLUS_1            3             59
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            3             34
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ART1 MUTATED        1      0      6
  ART1 WILD-TYPE    105     54     91
D252V6, multiclass
        clus
vv       ART1 MUTATED ART1 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ART1 MUTATED        6      0      1
  ART1 WILD-TYPE    117     95     70
D252V7, multiclass
        clus
vv       ART1 MUTATED ART1 WILD-TYPE
  CLUS_1            6            117
  CLUS_2            0             95
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ART1 MUTATED        6      0      1
  ART1 WILD-TYPE    151     63     68
D252V8, multiclass
        clus
vv       ART1 MUTATED ART1 WILD-TYPE
  CLUS_1            6            151
  CLUS_2            0             63
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ART1 MUTATED        0      1      3      1      0      0
  ART1 WILD-TYPE     33     18     56     38     16     45
D252V9, multiclass
        clus
vv       ART1 MUTATED ART1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             18
  CLUS_3            3             56
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ART1 MUTATED        3      0      1      0      1      0
  ART1 WILD-TYPE     44     39     34     32     22     35
D252V10, multiclass
        clus
vv       ART1 MUTATED ART1 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            0             32
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(253) Variable = DAO MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DAO MUTATED        2      7      0      1      1
  DAO WILD-TYPE     77    119     27     42     11
D253V1, multiclass
        clus
vv       DAO MUTATED DAO WILD-TYPE
  CLUS_1           2            77
  CLUS_2           7           119
  CLUS_3           0            27
  CLUS_4           1            42
  CLUS_5           1            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAO MUTATED        1      7      1      1
  DAO WILD-TYPE     70     69     33     62
D253V2, multiclass
        clus
vv       DAO MUTATED DAO WILD-TYPE
  CLUS_1           1            70
  CLUS_2           7            69
  CLUS_3           1            33
  CLUS_4           1            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DAO MUTATED        1      2      3      0      2
  DAO WILD-TYPE     15     60     48     65     53
D253V3, multiclass
        clus
vv       DAO MUTATED DAO WILD-TYPE
  CLUS_1           1            15
  CLUS_2           2            60
  CLUS_3           3            48
  CLUS_4           0            65
  CLUS_5           2            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAO MUTATED        3      3      2      0
  DAO WILD-TYPE     95     41     48     57
D253V4, multiclass
        clus
vv       DAO MUTATED DAO WILD-TYPE
  CLUS_1           3            95
  CLUS_2           3            41
  CLUS_3           2            48
  CLUS_4           0            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DAO MUTATED        2      2      3      3      1
  DAO WILD-TYPE     60     57     37     34     58
D253V5, multiclass
        clus
vv       DAO MUTATED DAO WILD-TYPE
  CLUS_1           2            60
  CLUS_2           2            57
  CLUS_3           3            37
  CLUS_4           3            34
  CLUS_5           1            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DAO MUTATED        2      2      7
  DAO WILD-TYPE    104     52     90
D253V6, multiclass
        clus
vv       DAO MUTATED DAO WILD-TYPE
  CLUS_1           2           104
  CLUS_2           2            52
  CLUS_3           7            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DAO MUTATED        6      3      2
  DAO WILD-TYPE    117     92     69
D253V7, multiclass
        clus
vv       DAO MUTATED DAO WILD-TYPE
  CLUS_1           6           117
  CLUS_2           3            92
  CLUS_3           2            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DAO MUTATED        8      2      1
  DAO WILD-TYPE    149     61     68
D253V8, multiclass
        clus
vv       DAO MUTATED DAO WILD-TYPE
  CLUS_1           8           149
  CLUS_2           2            61
  CLUS_3           1            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DAO MUTATED        1      3      2      1      0      1
  DAO WILD-TYPE     32     16     57     38     16     44
D253V9, multiclass
        clus
vv       DAO MUTATED DAO WILD-TYPE
  CLUS_1           1            32
  CLUS_2           3            16
  CLUS_3           2            57
  CLUS_4           1            38
  CLUS_5           0            16
  CLUS_6           1            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DAO MUTATED        3      1      1      2      1      0
  DAO WILD-TYPE     44     38     34     30     22     35
D253V10, multiclass
        clus
vv       DAO MUTATED DAO WILD-TYPE
  CLUS_1           3            44
  CLUS_2           1            38
  CLUS_3           1            34
  CLUS_4           2            30
  CLUS_5           1            22
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(254) Variable = HIVEP3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIVEP3 MUTATED        6     15      2      3      1
  HIVEP3 WILD-TYPE     73    111     25     40     11
D254V1, multiclass
        clus
vv       HIVEP3 MUTATED HIVEP3 WILD-TYPE
  CLUS_1              6               73
  CLUS_2             15              111
  CLUS_3              2               25
  CLUS_4              3               40
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP3 MUTATED        3     12      6      3
  HIVEP3 WILD-TYPE     68     64     28     60
D254V2, multiclass
        clus
vv       HIVEP3 MUTATED HIVEP3 WILD-TYPE
  CLUS_1              3               68
  CLUS_2             12               64
  CLUS_3              6               28
  CLUS_4              3               60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIVEP3 MUTATED        3      8      6      0      5
  HIVEP3 WILD-TYPE     13     54     45     65     50
D254V3, multiclass
        clus
vv       HIVEP3 MUTATED HIVEP3 WILD-TYPE
  CLUS_1              3               13
  CLUS_2              8               54
  CLUS_3              6               45
  CLUS_4              0               65
  CLUS_5              5               50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP3 MUTATED        8      8      4      2
  HIVEP3 WILD-TYPE     90     36     46     55
D254V4, multiclass
        clus
vv       HIVEP3 MUTATED HIVEP3 WILD-TYPE
  CLUS_1              8               90
  CLUS_2              8               36
  CLUS_3              4               46
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIVEP3 MUTATED       13      1      4      3      4
  HIVEP3 WILD-TYPE     49     58     36     34     55
D254V5, multiclass
        clus
vv       HIVEP3 MUTATED HIVEP3 WILD-TYPE
  CLUS_1             13               49
  CLUS_2              1               58
  CLUS_3              4               36
  CLUS_4              3               34
  CLUS_5              4               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HIVEP3 MUTATED       12      2     11
  HIVEP3 WILD-TYPE     94     52     86
D254V6, multiclass
        clus
vv       HIVEP3 MUTATED HIVEP3 WILD-TYPE
  CLUS_1             12               94
  CLUS_2              2               52
  CLUS_3             11               86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HIVEP3 MUTATED       19      2      6
  HIVEP3 WILD-TYPE    104     93     65
D254V7, multiclass
        clus
vv       HIVEP3 MUTATED HIVEP3 WILD-TYPE
  CLUS_1             19              104
  CLUS_2              2               93
  CLUS_3              6               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HIVEP3 MUTATED       19      2      6
  HIVEP3 WILD-TYPE    138     61     63
D254V8, multiclass
        clus
vv       HIVEP3 MUTATED HIVEP3 WILD-TYPE
  CLUS_1             19              138
  CLUS_2              2               61
  CLUS_3              6               63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HIVEP3 MUTATED        5      4      8      4      0      1
  HIVEP3 WILD-TYPE     28     15     51     35     16     44
D254V9, multiclass
        clus
vv       HIVEP3 MUTATED HIVEP3 WILD-TYPE
  CLUS_1              5               28
  CLUS_2              4               15
  CLUS_3              8               51
  CLUS_4              4               35
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HIVEP3 MUTATED        9      1      5      3      2      2
  HIVEP3 WILD-TYPE     38     38     30     29     21     33
D254V10, multiclass
        clus
vv       HIVEP3 MUTATED HIVEP3 WILD-TYPE
  CLUS_1              9               38
  CLUS_2              1               38
  CLUS_3              5               30
  CLUS_4              3               29
  CLUS_5              2               21
  CLUS_6              2               33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(255) Variable = NEXN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEXN MUTATED        1      7      0      0      0
  NEXN WILD-TYPE     78    119     27     43     12
D255V1, multiclass
        clus
vv       NEXN MUTATED NEXN WILD-TYPE
  CLUS_1            1             78
  CLUS_2            7            119
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEXN MUTATED        0      4      0      2
  NEXN WILD-TYPE     71     72     34     61
D255V2, multiclass
        clus
vv       NEXN MUTATED NEXN WILD-TYPE
  CLUS_1            0             71
  CLUS_2            4             72
  CLUS_3            0             34
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEXN MUTATED        0      3      1      0      2
  NEXN WILD-TYPE     16     59     50     65     53
D255V3, multiclass
        clus
vv       NEXN MUTATED NEXN WILD-TYPE
  CLUS_1            0             16
  CLUS_2            3             59
  CLUS_3            1             50
  CLUS_4            0             65
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEXN MUTATED        2      2      2      0
  NEXN WILD-TYPE     96     42     48     57
D255V4, multiclass
        clus
vv       NEXN MUTATED NEXN WILD-TYPE
  CLUS_1            2             96
  CLUS_2            2             42
  CLUS_3            2             48
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEXN MUTATED        5      0      1      0      0
  NEXN WILD-TYPE     57     59     39     37     59
D255V5, multiclass
        clus
vv       NEXN MUTATED NEXN WILD-TYPE
  CLUS_1            5             57
  CLUS_2            0             59
  CLUS_3            1             39
  CLUS_4            0             37
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEXN MUTATED        2      0      4
  NEXN WILD-TYPE    104     54     93
D255V6, multiclass
        clus
vv       NEXN MUTATED NEXN WILD-TYPE
  CLUS_1            2            104
  CLUS_2            0             54
  CLUS_3            4             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEXN MUTATED        8      0      0
  NEXN WILD-TYPE    115     95     71
D255V7, multiclass
        clus
vv       NEXN MUTATED NEXN WILD-TYPE
  CLUS_1            8            115
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEXN MUTATED        6      1      1
  NEXN WILD-TYPE    151     62     68
D255V8, multiclass
        clus
vv       NEXN MUTATED NEXN WILD-TYPE
  CLUS_1            6            151
  CLUS_2            1             62
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NEXN MUTATED        1      1      2      2      0      0
  NEXN WILD-TYPE     32     18     57     37     16     45
D255V9, multiclass
        clus
vv       NEXN MUTATED NEXN WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            2             57
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NEXN MUTATED        1      0      1      3      0      1
  NEXN WILD-TYPE     46     39     34     29     23     34
D255V10, multiclass
        clus
vv       NEXN MUTATED NEXN WILD-TYPE
  CLUS_1            1             46
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            3             29
  CLUS_5            0             23
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(256) Variable = VEZF1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VEZF1 MUTATED        0      5      0      0      0
  VEZF1 WILD-TYPE     79    121     27     43     12
D256V1, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             5             121
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VEZF1 MUTATED        0      1      0      2
  VEZF1 WILD-TYPE     71     75     34     61
D256V2, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             1              75
  CLUS_3             0              34
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VEZF1 MUTATED        1      0      1      0      3
  VEZF1 WILD-TYPE     15     62     50     65     52
D256V3, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             0              62
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VEZF1 MUTATED        2      3      0      0
  VEZF1 WILD-TYPE     96     41     50     57
D256V4, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             3              41
  CLUS_3             0              50
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VEZF1 MUTATED        1      1      1      1      0
  VEZF1 WILD-TYPE     61     58     39     36     59
D256V5, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VEZF1 MUTATED        3      0      1
  VEZF1 WILD-TYPE    103     54     96
D256V6, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             1              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VEZF1 MUTATED        4      1      0
  VEZF1 WILD-TYPE    119     94     71
D256V7, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             4             119
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VEZF1 MUTATED        4      0      1
  VEZF1 WILD-TYPE    153     63     68
D256V8, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             4             153
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  VEZF1 MUTATED        1      0      1      0      0      1
  VEZF1 WILD-TYPE     32     19     58     39     16     44
D256V9, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             1              58
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  VEZF1 MUTATED        1      1      1      0      0      0
  VEZF1 WILD-TYPE     46     38     34     32     23     35
D256V10, multiclass
        clus
vv       VEZF1 MUTATED VEZF1 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              38
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(257) Variable = CETN3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CETN3 MUTATED        0      6      0      1      0
  CETN3 WILD-TYPE     79    120     27     42     12
D257V1, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CETN3 MUTATED        0      4      0      1
  CETN3 WILD-TYPE     71     72     34     62
D257V2, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             4              72
  CLUS_3             0              34
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CETN3 MUTATED        1      2      1      1      2
  CETN3 WILD-TYPE     15     60     50     64     53
D257V3, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              60
  CLUS_3             1              50
  CLUS_4             1              64
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CETN3 MUTATED        1      4      1      1
  CETN3 WILD-TYPE     97     40     49     56
D257V4, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             4              40
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CETN3 MUTATED        2      1      1      1      0
  CETN3 WILD-TYPE     60     58     39     36     59
D257V5, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CETN3 MUTATED        2      0      3
  CETN3 WILD-TYPE    104     54     94
D257V6, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CETN3 MUTATED        6      1      0
  CETN3 WILD-TYPE    117     94     71
D257V7, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CETN3 MUTATED        6      1      0
  CETN3 WILD-TYPE    151     62     69
D257V8, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CETN3 MUTATED        3      0      2      0      0      0
  CETN3 WILD-TYPE     30     19     57     39     16     45
D257V9, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              19
  CLUS_3             2              57
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CETN3 MUTATED        2      0      2      1      0      0
  CETN3 WILD-TYPE     45     39     33     31     23     35
D257V10, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(258) Variable = SGOL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGOL2 MUTATED        0      8      1      1      1
  SGOL2 WILD-TYPE     79    118     26     42     11
D258V1, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             8             118
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGOL2 MUTATED        1      6      2      0
  SGOL2 WILD-TYPE     70     70     32     63
D258V2, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             6              70
  CLUS_3             2              32
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGOL2 MUTATED        0      3      3      0      5
  SGOL2 WILD-TYPE     16     59     48     65     50
D258V3, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              59
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGOL2 MUTATED        2      4      4      1
  SGOL2 WILD-TYPE     96     40     46     56
D258V4, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             4              40
  CLUS_3             4              46
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGOL2 MUTATED        6      1      2      0      0
  SGOL2 WILD-TYPE     56     58     38     37     59
D258V5, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             1              58
  CLUS_3             2              38
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SGOL2 MUTATED        2      1      6
  SGOL2 WILD-TYPE    104     53     91
D258V6, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              53
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SGOL2 MUTATED        8      2      1
  SGOL2 WILD-TYPE    115     93     70
D258V7, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             2              93
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SGOL2 MUTATED        9      1      1
  SGOL2 WILD-TYPE    148     62     68
D258V8, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             9             148
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SGOL2 MUTATED        1      1      5      0      0      1
  SGOL2 WILD-TYPE     32     18     54     39     16     44
D258V9, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             5              54
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SGOL2 MUTATED        1      0      4      2      1      0
  SGOL2 WILD-TYPE     46     39     31     30     22     35
D258V10, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              39
  CLUS_3             4              31
  CLUS_4             2              30
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(259) Variable = CASD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASD1 MUTATED        1      7      1      0      2
  CASD1 WILD-TYPE     78    119     26     43     10
D259V1, multiclass
        clus
vv       CASD1 MUTATED CASD1 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             7             119
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASD1 MUTATED        0      7      0      0
  CASD1 WILD-TYPE     71     69     34     63
D259V2, multiclass
        clus
vv       CASD1 MUTATED CASD1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             7              69
  CLUS_3             0              34
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASD1 MUTATED        0      4      3      0      3
  CASD1 WILD-TYPE     16     58     48     65     52
D259V3, multiclass
        clus
vv       CASD1 MUTATED CASD1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             4              58
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASD1 MUTATED        1      5      4      0
  CASD1 WILD-TYPE     97     39     46     57
D259V4, multiclass
        clus
vv       CASD1 MUTATED CASD1 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             5              39
  CLUS_3             4              46
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASD1 MUTATED        7      0      0      2      1
  CASD1 WILD-TYPE     55     59     40     35     58
D259V5, multiclass
        clus
vv       CASD1 MUTATED CASD1 WILD-TYPE
  CLUS_1             7              55
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             2              35
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASD1 MUTATED        3      0      7
  CASD1 WILD-TYPE    103     54     90
D259V6, multiclass
        clus
vv       CASD1 MUTATED CASD1 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             7              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASD1 MUTATED        8      0      3
  CASD1 WILD-TYPE    115     95     68
D259V7, multiclass
        clus
vv       CASD1 MUTATED CASD1 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             0              95
  CLUS_3             3              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASD1 MUTATED       10      0      1
  CASD1 WILD-TYPE    147     63     68
D259V8, multiclass
        clus
vv       CASD1 MUTATED CASD1 WILD-TYPE
  CLUS_1            10             147
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CASD1 MUTATED        0      2      3      1      0      0
  CASD1 WILD-TYPE     33     17     56     38     16     45
D259V9, multiclass
        clus
vv       CASD1 MUTATED CASD1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              17
  CLUS_3             3              56
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CASD1 MUTATED        4      0      2      0      0      0
  CASD1 WILD-TYPE     43     39     33     32     23     35
D259V10, multiclass
        clus
vv       CASD1 MUTATED CASD1 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(260) Variable = FAM116A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM116A MUTATED        0      5      0      0      1
  FAM116A WILD-TYPE     79    121     27     43     11
D260V1, multiclass
        clus
vv       FAM116A MUTATED FAM116A WILD-TYPE
  CLUS_1               0                79
  CLUS_2               5               121
  CLUS_3               0                27
  CLUS_4               0                43
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM116A MUTATED        1      3      0      0
  FAM116A WILD-TYPE     70     73     34     63
D260V2, multiclass
        clus
vv       FAM116A MUTATED FAM116A WILD-TYPE
  CLUS_1               1                70
  CLUS_2               3                73
  CLUS_3               0                34
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM116A MUTATED        0      2      2      0      2
  FAM116A WILD-TYPE     16     60     49     65     53
D260V3, multiclass
        clus
vv       FAM116A MUTATED FAM116A WILD-TYPE
  CLUS_1               0                16
  CLUS_2               2                60
  CLUS_3               2                49
  CLUS_4               0                65
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM116A MUTATED        2      4      0      0
  FAM116A WILD-TYPE     96     40     50     57
D260V4, multiclass
        clus
vv       FAM116A MUTATED FAM116A WILD-TYPE
  CLUS_1               2                96
  CLUS_2               4                40
  CLUS_3               0                50
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM116A MUTATED        3      1      1      1      0
  FAM116A WILD-TYPE     59     58     39     36     59
D260V5, multiclass
        clus
vv       FAM116A MUTATED FAM116A WILD-TYPE
  CLUS_1               3                59
  CLUS_2               1                58
  CLUS_3               1                39
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM116A MUTATED        0      1      5
  FAM116A WILD-TYPE    106     53     92
D260V6, multiclass
        clus
vv       FAM116A MUTATED FAM116A WILD-TYPE
  CLUS_1               0               106
  CLUS_2               1                53
  CLUS_3               5                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM116A MUTATED        5      1      0
  FAM116A WILD-TYPE    118     94     71
D260V7, multiclass
        clus
vv       FAM116A MUTATED FAM116A WILD-TYPE
  CLUS_1               5               118
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM116A MUTATED        5      1      0
  FAM116A WILD-TYPE    152     62     69
D260V8, multiclass
        clus
vv       FAM116A MUTATED FAM116A WILD-TYPE
  CLUS_1               5               152
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM116A MUTATED        2      1      0      0      0      1
  FAM116A WILD-TYPE     31     18     59     39     16     44
D260V9, multiclass
        clus
vv       FAM116A MUTATED FAM116A WILD-TYPE
  CLUS_1               2                31
  CLUS_2               1                18
  CLUS_3               0                59
  CLUS_4               0                39
  CLUS_5               0                16
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM116A MUTATED        2      1      0      1      0      0
  FAM116A WILD-TYPE     45     38     35     31     23     35
D260V10, multiclass
        clus
vv       FAM116A MUTATED FAM116A WILD-TYPE
  CLUS_1               2                45
  CLUS_2               1                38
  CLUS_3               0                35
  CLUS_4               1                31
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(261) Variable = TCHP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCHP MUTATED        1      8      1      0      0
  TCHP WILD-TYPE     78    118     26     43     12
D261V1, multiclass
        clus
vv       TCHP MUTATED TCHP WILD-TYPE
  CLUS_1            1             78
  CLUS_2            8            118
  CLUS_3            1             26
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCHP MUTATED        2      2      2      1
  TCHP WILD-TYPE     69     74     32     62
D261V2, multiclass
        clus
vv       TCHP MUTATED TCHP WILD-TYPE
  CLUS_1            2             69
  CLUS_2            2             74
  CLUS_3            2             32
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCHP MUTATED        1      5      1      0      2
  TCHP WILD-TYPE     15     57     50     65     53
D261V3, multiclass
        clus
vv       TCHP MUTATED TCHP WILD-TYPE
  CLUS_1            1             15
  CLUS_2            5             57
  CLUS_3            1             50
  CLUS_4            0             65
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCHP MUTATED        1      5      2      1
  TCHP WILD-TYPE     97     39     48     56
D261V4, multiclass
        clus
vv       TCHP MUTATED TCHP WILD-TYPE
  CLUS_1            1             97
  CLUS_2            5             39
  CLUS_3            2             48
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCHP MUTATED        5      0      0      2      2
  TCHP WILD-TYPE     57     59     40     35     57
D261V5, multiclass
        clus
vv       TCHP MUTATED TCHP WILD-TYPE
  CLUS_1            5             57
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            2             35
  CLUS_5            2             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TCHP MUTATED        5      0      4
  TCHP WILD-TYPE    101     54     93
D261V6, multiclass
        clus
vv       TCHP MUTATED TCHP WILD-TYPE
  CLUS_1            5            101
  CLUS_2            0             54
  CLUS_3            4             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TCHP MUTATED        8      0      2
  TCHP WILD-TYPE    115     95     69
D261V7, multiclass
        clus
vv       TCHP MUTATED TCHP WILD-TYPE
  CLUS_1            8            115
  CLUS_2            0             95
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TCHP MUTATED        8      1      1
  TCHP WILD-TYPE    149     62     68
D261V8, multiclass
        clus
vv       TCHP MUTATED TCHP WILD-TYPE
  CLUS_1            8            149
  CLUS_2            1             62
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TCHP MUTATED        1      1      2      2      1      0
  TCHP WILD-TYPE     32     18     57     37     15     45
D261V9, multiclass
        clus
vv       TCHP MUTATED TCHP WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            2             57
  CLUS_4            2             37
  CLUS_5            1             15
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TCHP MUTATED        2      0      2      0      2      1
  TCHP WILD-TYPE     45     39     33     32     21     34
D261V10, multiclass
        clus
vv       TCHP MUTATED TCHP WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            2             33
  CLUS_4            0             32
  CLUS_5            2             21
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(262) Variable = IPO11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPO11 MUTATED        1      7      0      2      1
  IPO11 WILD-TYPE     78    119     27     41     11
D262V1, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             7             119
  CLUS_3             0              27
  CLUS_4             2              41
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPO11 MUTATED        0      6      2      1
  IPO11 WILD-TYPE     71     70     32     62
D262V2, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             6              70
  CLUS_3             2              32
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPO11 MUTATED        0      7      2      1      1
  IPO11 WILD-TYPE     16     55     49     64     54
D262V3, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             7              55
  CLUS_3             2              49
  CLUS_4             1              64
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPO11 MUTATED        3      6      1      1
  IPO11 WILD-TYPE     95     38     49     56
D262V4, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             6              38
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPO11 MUTATED        6      2      0      2      1
  IPO11 WILD-TYPE     56     57     40     35     58
D262V5, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             2              57
  CLUS_3             0              40
  CLUS_4             2              35
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IPO11 MUTATED        4      1      6
  IPO11 WILD-TYPE    102     53     91
D262V6, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             1              53
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IPO11 MUTATED        9      2      1
  IPO11 WILD-TYPE    114     93     70
D262V7, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             9             114
  CLUS_2             2              93
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IPO11 MUTATED       10      1      1
  IPO11 WILD-TYPE    147     62     68
D262V8, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1            10             147
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IPO11 MUTATED        1      0      5      1      0      1
  IPO11 WILD-TYPE     32     19     54     38     16     44
D262V9, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             5              54
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IPO11 MUTATED        4      1      2      0      0      1
  IPO11 WILD-TYPE     43     38     33     32     23     34
D262V10, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             1              38
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(263) Variable = CLDN6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLDN6 MUTATED        0      7      0      0      0
  CLDN6 WILD-TYPE     79    119     27     43     12
D263V1, multiclass
        clus
vv       CLDN6 MUTATED CLDN6 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             7             119
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLDN6 MUTATED        0      6      0      0
  CLDN6 WILD-TYPE     71     70     34     63
D263V2, multiclass
        clus
vv       CLDN6 MUTATED CLDN6 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             6              70
  CLUS_3             0              34
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLDN6 MUTATED        0      1      2      0      3
  CLDN6 WILD-TYPE     16     61     49     65     52
D263V3, multiclass
        clus
vv       CLDN6 MUTATED CLDN6 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              61
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLDN6 MUTATED        1      4      0      1
  CLDN6 WILD-TYPE     97     40     50     56
D263V4, multiclass
        clus
vv       CLDN6 MUTATED CLDN6 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             4              40
  CLUS_3             0              50
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLDN6 MUTATED        3      1      0      2      0
  CLDN6 WILD-TYPE     59     58     40     35     59
D263V5, multiclass
        clus
vv       CLDN6 MUTATED CLDN6 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLDN6 MUTATED        0      1      5
  CLDN6 WILD-TYPE    106     53     92
D263V6, multiclass
        clus
vv       CLDN6 MUTATED CLDN6 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             1              53
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLDN6 MUTATED        6      0      1
  CLDN6 WILD-TYPE    117     95     70
D263V7, multiclass
        clus
vv       CLDN6 MUTATED CLDN6 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             0              95
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLDN6 MUTATED        6      0      1
  CLDN6 WILD-TYPE    151     63     68
D263V8, multiclass
        clus
vv       CLDN6 MUTATED CLDN6 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CLDN6 MUTATED        4      1      0      1      0      0
  CLDN6 WILD-TYPE     29     18     59     38     16     45
D263V9, multiclass
        clus
vv       CLDN6 MUTATED CLDN6 WILD-TYPE
  CLUS_1             4              29
  CLUS_2             1              18
  CLUS_3             0              59
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CLDN6 MUTATED        3      0      0      3      0      0
  CLDN6 WILD-TYPE     44     39     35     29     23     35
D263V10, multiclass
        clus
vv       CLDN6 MUTATED CLDN6 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             0              35
  CLUS_4             3              29
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(264) Variable = SOX7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOX7 MUTATED        0      8      2      1      1
  SOX7 WILD-TYPE     79    118     25     42     11
D264V1, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            8            118
  CLUS_3            2             25
  CLUS_4            1             42
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX7 MUTATED        0      6      1      2
  SOX7 WILD-TYPE     71     70     33     61
D264V2, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            6             70
  CLUS_3            1             33
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOX7 MUTATED        3      5      1      0      1
  SOX7 WILD-TYPE     13     57     50     65     54
D264V3, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            3             13
  CLUS_2            5             57
  CLUS_3            1             50
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX7 MUTATED        4      2      4      0
  SOX7 WILD-TYPE     94     42     46     57
D264V4, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            4             94
  CLUS_2            2             42
  CLUS_3            4             46
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOX7 MUTATED        5      1      2      4      0
  SOX7 WILD-TYPE     57     58     38     33     59
D264V5, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            5             57
  CLUS_2            1             58
  CLUS_3            2             38
  CLUS_4            4             33
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOX7 MUTATED        3      1      8
  SOX7 WILD-TYPE    103     53     89
D264V6, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            3            103
  CLUS_2            1             53
  CLUS_3            8             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOX7 MUTATED       12      0      0
  SOX7 WILD-TYPE    111     95     71
D264V7, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1           12            111
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOX7 MUTATED       12      0      0
  SOX7 WILD-TYPE    145     63     69
D264V8, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1           12            145
  CLUS_2            0             63
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SOX7 MUTATED        0      4      4      1      0      0
  SOX7 WILD-TYPE     33     15     55     38     16     45
D264V9, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            4             15
  CLUS_3            4             55
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SOX7 MUTATED        3      1      2      2      1      0
  SOX7 WILD-TYPE     44     38     33     30     22     35
D264V10, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            1             38
  CLUS_3            2             33
  CLUS_4            2             30
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(265) Variable = C20ORF160 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C20ORF160 MUTATED        0      7      0      1      0
  C20ORF160 WILD-TYPE     79    119     27     42     12
D265V1, multiclass
        clus
vv       C20ORF160 MUTATED C20ORF160 WILD-TYPE
  CLUS_1                 0                  79
  CLUS_2                 7                 119
  CLUS_3                 0                  27
  CLUS_4                 1                  42
  CLUS_5                 0                  12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF160 MUTATED        1      4      2      1
  C20ORF160 WILD-TYPE     70     72     32     62
D265V2, multiclass
        clus
vv       C20ORF160 MUTATED C20ORF160 WILD-TYPE
  CLUS_1                 1                  70
  CLUS_2                 4                  72
  CLUS_3                 2                  32
  CLUS_4                 1                  62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C20ORF160 MUTATED        0      3      1      0      2
  C20ORF160 WILD-TYPE     16     59     50     65     53
D265V3, multiclass
        clus
vv       C20ORF160 MUTATED C20ORF160 WILD-TYPE
  CLUS_1                 0                  16
  CLUS_2                 3                  59
  CLUS_3                 1                  50
  CLUS_4                 0                  65
  CLUS_5                 2                  53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF160 MUTATED        1      2      2      1
  C20ORF160 WILD-TYPE     97     42     48     56
D265V4, multiclass
        clus
vv       C20ORF160 MUTATED C20ORF160 WILD-TYPE
  CLUS_1                 1                  97
  CLUS_2                 2                  42
  CLUS_3                 2                  48
  CLUS_4                 1                  56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C20ORF160 MUTATED        5      0      0      0      1
  C20ORF160 WILD-TYPE     57     59     40     37     58
D265V5, multiclass
        clus
vv       C20ORF160 MUTATED C20ORF160 WILD-TYPE
  CLUS_1                 5                  57
  CLUS_2                 0                  59
  CLUS_3                 0                  40
  CLUS_4                 0                  37
  CLUS_5                 1                  58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C20ORF160 MUTATED        1      0      5
  C20ORF160 WILD-TYPE    105     54     92
D265V6, multiclass
        clus
vv       C20ORF160 MUTATED C20ORF160 WILD-TYPE
  CLUS_1                 1                 105
  CLUS_2                 0                  54
  CLUS_3                 5                  92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C20ORF160 MUTATED        7      0      1
  C20ORF160 WILD-TYPE    116     95     70
D265V7, multiclass
        clus
vv       C20ORF160 MUTATED C20ORF160 WILD-TYPE
  CLUS_1                 7                 116
  CLUS_2                 0                  95
  CLUS_3                 1                  70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C20ORF160 MUTATED        7      0      1
  C20ORF160 WILD-TYPE    150     63     68
D265V8, multiclass
        clus
vv       C20ORF160 MUTATED C20ORF160 WILD-TYPE
  CLUS_1                 7                 150
  CLUS_2                 0                  63
  CLUS_3                 1                  68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C20ORF160 MUTATED        0      1      3      2      1      0
  C20ORF160 WILD-TYPE     33     18     56     37     15     45
D265V9, multiclass
        clus
vv       C20ORF160 MUTATED C20ORF160 WILD-TYPE
  CLUS_1                 0                  33
  CLUS_2                 1                  18
  CLUS_3                 3                  56
  CLUS_4                 2                  37
  CLUS_5                 1                  15
  CLUS_6                 0                  45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C20ORF160 MUTATED        2      0      3      0      1      1
  C20ORF160 WILD-TYPE     45     39     32     32     22     34
D265V10, multiclass
        clus
vv       C20ORF160 MUTATED C20ORF160 WILD-TYPE
  CLUS_1                 2                  45
  CLUS_2                 0                  39
  CLUS_3                 3                  32
  CLUS_4                 0                  32
  CLUS_5                 1                  22
  CLUS_6                 1                  34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(266) Variable = ZNF23 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF23 MUTATED        0      2      0      0      0
  ZNF23 WILD-TYPE     79    124     27     43     12
D266V1, multiclass
[1] "Remove cluster labels:" "ZNF23 MUTATED"         
clus
  ZNF23 MUTATED ZNF23 WILD-TYPE 
              2             285 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4257      TCGA-BR-4267 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292      TCGA-BR-4294 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362      TCGA-BR-4363 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369      TCGA-BR-4370 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453      TCGA-BR-6454 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457      TCGA-BR-6458 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6710 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8081 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297      TCGA-BR-8360 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8373      TCGA-BR-8380 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4J4      TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300      TCGA-CG-4301 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4442      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4469      TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-FP-A4BF      TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7136 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245      TCGA-HU-8249 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608      TCGA-HU-8610 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4G2      TCGA-HU-A4G3      TCGA-HU-A4G6      TCGA-HU-A4G8 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4G9      TCGA-HU-A4GC      TCGA-HU-A4GD      TCGA-HU-A4GF 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4H0      TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HD 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IP-7968 
"ZNF23 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF23 MUTATED        0      2      0      0
  ZNF23 WILD-TYPE     71     74     34     63
D266V2, multiclass
[1] "Remove cluster labels:" "ZNF23 MUTATED"         
clus
  ZNF23 MUTATED ZNF23 WILD-TYPE 
              2             242 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8373 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J6      TCGA-BR-A4J7 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-5717      TCGA-CG-5718 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-EQ-5647      TCGA-EQ-8122      TCGA-EQ-A4SO 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-FP-8631      TCGA-FP-A4BF      TCGA-HF-7132      TCGA-HF-7133 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-8249      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4G3      TCGA-HU-A4G6 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4G8      TCGA-HU-A4G9      TCGA-HU-A4GC      TCGA-HU-A4GD 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GP 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H0      TCGA-HU-A4H2      TCGA-HU-A4H3 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-8663      TCGA-IP-7968 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF23 MUTATED        0      0      1      1      0
  ZNF23 WILD-TYPE     16     62     50     64     55
D266V3, multiclass
[1] "Remove cluster labels:" "ZNF23 MUTATED"         
clus
  ZNF23 MUTATED ZNF23 WILD-TYPE 
              2             247 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4257      TCGA-BR-4267 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292      TCGA-BR-4294 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362      TCGA-BR-4363 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369      TCGA-BR-4370 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453      TCGA-BR-6454 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457      TCGA-BR-6458 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566      TCGA-BR-6705 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6710      TCGA-BR-6801 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7715      TCGA-BR-7716 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8080      TCGA-BR-8081 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297      TCGA-BR-8360 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8380      TCGA-BR-8381 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U      TCGA-BR-A452 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J6 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48A 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A4MJ      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4442      TCGA-CG-4443      TCGA-CG-4444 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4469      TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5723      TCGA-CG-5724 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT      TCGA-D7-A4YU 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7916      TCGA-FP-7998 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7136      TCGA-HJ-7597 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-8602      TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4GF 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF23 MUTATED        0      1      0      1
  ZNF23 WILD-TYPE     98     43     50     56
D266V4, multiclass
[1] "Remove cluster labels:" "ZNF23 MUTATED"         
clus
  ZNF23 MUTATED ZNF23 WILD-TYPE 
              2             247 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4257      TCGA-BR-4267 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292      TCGA-BR-4294 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362      TCGA-BR-4363 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369      TCGA-BR-4370 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453      TCGA-BR-6454 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457      TCGA-BR-6458 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566      TCGA-BR-6705 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6710      TCGA-BR-6801 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7715      TCGA-BR-7716 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8080      TCGA-BR-8081 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297      TCGA-BR-8360 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8380      TCGA-BR-8381 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U      TCGA-BR-A452 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J6 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48A 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A4MJ      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4442      TCGA-CG-4443      TCGA-CG-4444 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4469      TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5723      TCGA-CG-5724 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT      TCGA-D7-A4YU 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7916      TCGA-FP-7998 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7136      TCGA-HJ-7597 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-8602      TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4GF 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF23 MUTATED        2      1      0      0      0
  ZNF23 WILD-TYPE     60     58     40     37     59
D266V5, multiclass
        clus
vv       ZNF23 MUTATED ZNF23 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF23 MUTATED        0      1      2
  ZNF23 WILD-TYPE    106     53     95
D266V6, multiclass
        clus
vv       ZNF23 MUTATED ZNF23 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             1              53
  CLUS_3             2              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF23 MUTATED        2      1      0
  ZNF23 WILD-TYPE    121     94     71
D266V7, multiclass
        clus
vv       ZNF23 MUTATED ZNF23 WILD-TYPE
  CLUS_1             2             121
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF23 MUTATED        2      1      0
  ZNF23 WILD-TYPE    155     62     69
D266V8, multiclass
        clus
vv       ZNF23 MUTATED ZNF23 WILD-TYPE
  CLUS_1             2             155
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF23 MUTATED        1      0      0      1      0      0
  ZNF23 WILD-TYPE     32     19     59     38     16     45
D266V9, multiclass
[1] "Remove cluster labels:" "ZNF23 MUTATED"         
clus
  ZNF23 MUTATED ZNF23 WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8373      TCGA-BR-8380 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J6 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-HF-7132      TCGA-HF-7136 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC      TCGA-HU-A4GD 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IP-7968 
"ZNF23 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF23 MUTATED        1      0      0      0      1      0
  ZNF23 WILD-TYPE     46     39     35     32     22     35
D266V10, multiclass
[1] "Remove cluster labels:" "ZNF23 MUTATED"         
clus
  ZNF23 MUTATED ZNF23 WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8373      TCGA-BR-8380 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J6 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-HF-7132      TCGA-HF-7136 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC      TCGA-HU-A4GD 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IP-7968 
"ZNF23 WILD-TYPE" 

Clustering(267) Variable = EFHA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFHA1 MUTATED        0      6      1      1      1
  EFHA1 WILD-TYPE     79    120     26     42     11
D267V1, multiclass
        clus
vv       EFHA1 MUTATED EFHA1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHA1 MUTATED        0      5      2      1
  EFHA1 WILD-TYPE     71     71     32     62
D267V2, multiclass
        clus
vv       EFHA1 MUTATED EFHA1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             5              71
  CLUS_3             2              32
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFHA1 MUTATED        1      4      1      0      0
  EFHA1 WILD-TYPE     15     58     50     65     55
D267V3, multiclass
        clus
vv       EFHA1 MUTATED EFHA1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             4              58
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             0              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHA1 MUTATED        2      2      2      0
  EFHA1 WILD-TYPE     96     42     48     57
D267V4, multiclass
        clus
vv       EFHA1 MUTATED EFHA1 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             2              42
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFHA1 MUTATED        6      0      0      1      0
  EFHA1 WILD-TYPE     56     59     40     36     59
D267V5, multiclass
        clus
vv       EFHA1 MUTATED EFHA1 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFHA1 MUTATED        1      0      6
  EFHA1 WILD-TYPE    105     54     91
D267V6, multiclass
        clus
vv       EFHA1 MUTATED EFHA1 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFHA1 MUTATED        8      1      0
  EFHA1 WILD-TYPE    115     94     71
D267V7, multiclass
        clus
vv       EFHA1 MUTATED EFHA1 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFHA1 MUTATED        8      1      0
  EFHA1 WILD-TYPE    149     62     69
D267V8, multiclass
        clus
vv       EFHA1 MUTATED EFHA1 WILD-TYPE
  CLUS_1             8             149
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EFHA1 MUTATED        0      3      2      2      0      1
  EFHA1 WILD-TYPE     33     16     57     37     16     44
D267V9, multiclass
        clus
vv       EFHA1 MUTATED EFHA1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             3              16
  CLUS_3             2              57
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EFHA1 MUTATED        5      1      1      1      0      0
  EFHA1 WILD-TYPE     42     38     34     31     23     35
D267V10, multiclass
        clus
vv       EFHA1 MUTATED EFHA1 WILD-TYPE
  CLUS_1             5              42
  CLUS_2             1              38
  CLUS_3             1              34
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(268) Variable = PAPD4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAPD4 MUTATED        0      4      2      0      2
  PAPD4 WILD-TYPE     79    122     25     43     10
D268V1, multiclass
        clus
vv       PAPD4 MUTATED PAPD4 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             4             122
  CLUS_3             2              25
  CLUS_4             0              43
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAPD4 MUTATED        1      5      1      0
  PAPD4 WILD-TYPE     70     71     33     63
D268V2, multiclass
        clus
vv       PAPD4 MUTATED PAPD4 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             5              71
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAPD4 MUTATED        1      2      3      0      2
  PAPD4 WILD-TYPE     15     60     48     65     53
D268V3, multiclass
        clus
vv       PAPD4 MUTATED PAPD4 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              60
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAPD4 MUTATED        2      4      2      0
  PAPD4 WILD-TYPE     96     40     48     57
D268V4, multiclass
        clus
vv       PAPD4 MUTATED PAPD4 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             4              40
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAPD4 MUTATED        4      0      2      1      0
  PAPD4 WILD-TYPE     58     59     38     36     59
D268V5, multiclass
        clus
vv       PAPD4 MUTATED PAPD4 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             2              38
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAPD4 MUTATED        0      1      6
  PAPD4 WILD-TYPE    106     53     91
D268V6, multiclass
        clus
vv       PAPD4 MUTATED PAPD4 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             1              53
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAPD4 MUTATED        5      2      1
  PAPD4 WILD-TYPE    118     93     70
D268V7, multiclass
        clus
vv       PAPD4 MUTATED PAPD4 WILD-TYPE
  CLUS_1             5             118
  CLUS_2             2              93
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAPD4 MUTATED        7      1      0
  PAPD4 WILD-TYPE    150     62     69
D268V8, multiclass
        clus
vv       PAPD4 MUTATED PAPD4 WILD-TYPE
  CLUS_1             7             150
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PAPD4 MUTATED        1      1      1      2      0      1
  PAPD4 WILD-TYPE     32     18     58     37     16     44
D268V9, multiclass
        clus
vv       PAPD4 MUTATED PAPD4 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             1              58
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PAPD4 MUTATED        1      1      1      1      2      0
  PAPD4 WILD-TYPE     46     38     34     31     21     35
D268V10, multiclass
        clus
vv       PAPD4 MUTATED PAPD4 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              38
  CLUS_3             1              34
  CLUS_4             1              31
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(269) Variable = VPRBP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPRBP MUTATED        0      8      0      0      1
  VPRBP WILD-TYPE     79    118     27     43     11
D269V1, multiclass
        clus
vv       VPRBP MUTATED VPRBP WILD-TYPE
  CLUS_1             0              79
  CLUS_2             8             118
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPRBP MUTATED        0      2      1      2
  VPRBP WILD-TYPE     71     74     33     61
D269V2, multiclass
        clus
vv       VPRBP MUTATED VPRBP WILD-TYPE
  CLUS_1             0              71
  CLUS_2             2              74
  CLUS_3             1              33
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPRBP MUTATED        1      3      0      1      4
  VPRBP WILD-TYPE     15     59     51     64     51
D269V3, multiclass
        clus
vv       VPRBP MUTATED VPRBP WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3              59
  CLUS_3             0              51
  CLUS_4             1              64
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPRBP MUTATED        3      5      0      1
  VPRBP WILD-TYPE     95     39     50     56
D269V4, multiclass
        clus
vv       VPRBP MUTATED VPRBP WILD-TYPE
  CLUS_1             3              95
  CLUS_2             5              39
  CLUS_3             0              50
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPRBP MUTATED        7      1      1      0      0
  VPRBP WILD-TYPE     55     58     39     37     59
D269V5, multiclass
        clus
vv       VPRBP MUTATED VPRBP WILD-TYPE
  CLUS_1             7              55
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VPRBP MUTATED        2      1      6
  VPRBP WILD-TYPE    104     53     91
D269V6, multiclass
        clus
vv       VPRBP MUTATED VPRBP WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              53
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VPRBP MUTATED        7      1      1
  VPRBP WILD-TYPE    116     94     70
D269V7, multiclass
        clus
vv       VPRBP MUTATED VPRBP WILD-TYPE
  CLUS_1             7             116
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VPRBP MUTATED        7      1      1
  VPRBP WILD-TYPE    150     62     68
D269V8, multiclass
        clus
vv       VPRBP MUTATED VPRBP WILD-TYPE
  CLUS_1             7             150
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  VPRBP MUTATED        1      0      2      1      0      1
  VPRBP WILD-TYPE     32     19     57     38     16     44
D269V9, multiclass
        clus
vv       VPRBP MUTATED VPRBP WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             2              57
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  VPRBP MUTATED        1      0      3      1      0      0
  VPRBP WILD-TYPE     46     39     32     31     23     35
D269V10, multiclass
        clus
vv       VPRBP MUTATED VPRBP WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              39
  CLUS_3             3              32
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(270) Variable = PLA2G1B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLA2G1B MUTATED        0      3      0      1      0
  PLA2G1B WILD-TYPE     79    123     27     42     12
D270V1, multiclass
        clus
vv       PLA2G1B MUTATED PLA2G1B WILD-TYPE
  CLUS_1               0                79
  CLUS_2               3               123
  CLUS_3               0                27
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLA2G1B MUTATED        0      1      0      3
  PLA2G1B WILD-TYPE     71     75     34     60
D270V2, multiclass
        clus
vv       PLA2G1B MUTATED PLA2G1B WILD-TYPE
  CLUS_1               0                71
  CLUS_2               1                75
  CLUS_3               0                34
  CLUS_4               3                60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLA2G1B MUTATED        0      0      1      2      1
  PLA2G1B WILD-TYPE     16     62     50     63     54
D270V3, multiclass
        clus
vv       PLA2G1B MUTATED PLA2G1B WILD-TYPE
  CLUS_1               0                16
  CLUS_2               0                62
  CLUS_3               1                50
  CLUS_4               2                63
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLA2G1B MUTATED        0      1      2      1
  PLA2G1B WILD-TYPE     98     43     48     56
D270V4, multiclass
        clus
vv       PLA2G1B MUTATED PLA2G1B WILD-TYPE
  CLUS_1               0                98
  CLUS_2               1                43
  CLUS_3               2                48
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLA2G1B MUTATED        2      1      0      0      1
  PLA2G1B WILD-TYPE     60     58     40     37     58
D270V5, multiclass
        clus
vv       PLA2G1B MUTATED PLA2G1B WILD-TYPE
  CLUS_1               2                60
  CLUS_2               1                58
  CLUS_3               0                40
  CLUS_4               0                37
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLA2G1B MUTATED        1      1      2
  PLA2G1B WILD-TYPE    105     53     95
D270V6, multiclass
        clus
vv       PLA2G1B MUTATED PLA2G1B WILD-TYPE
  CLUS_1               1               105
  CLUS_2               1                53
  CLUS_3               2                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLA2G1B MUTATED        1      2      1
  PLA2G1B WILD-TYPE    122     93     70
D270V7, multiclass
        clus
vv       PLA2G1B MUTATED PLA2G1B WILD-TYPE
  CLUS_1               1               122
  CLUS_2               2                93
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLA2G1B MUTATED        3      0      1
  PLA2G1B WILD-TYPE    154     63     68
D270V8, multiclass
        clus
vv       PLA2G1B MUTATED PLA2G1B WILD-TYPE
  CLUS_1               3               154
  CLUS_2               0                63
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLA2G1B MUTATED        0      0      0      1      2      0
  PLA2G1B WILD-TYPE     33     19     59     38     14     45
D270V9, multiclass
        clus
vv       PLA2G1B MUTATED PLA2G1B WILD-TYPE
  CLUS_1               0                33
  CLUS_2               0                19
  CLUS_3               0                59
  CLUS_4               1                38
  CLUS_5               2                14
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLA2G1B MUTATED        0      1      0      0      1      1
  PLA2G1B WILD-TYPE     47     38     35     32     22     34
D270V10, multiclass
        clus
vv       PLA2G1B MUTATED PLA2G1B WILD-TYPE
  CLUS_1               0                47
  CLUS_2               1                38
  CLUS_3               0                35
  CLUS_4               0                32
  CLUS_5               1                22
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(271) Variable = BTBD11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD11 MUTATED        3     14      1      1      1
  BTBD11 WILD-TYPE     76    112     26     42     11
D271V1, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              3               76
  CLUS_2             14              112
  CLUS_3              1               26
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD11 MUTATED        0      8      5      1
  BTBD11 WILD-TYPE     71     68     29     62
D271V2, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              8               68
  CLUS_3              5               29
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD11 MUTATED        2      7      4      2      2
  BTBD11 WILD-TYPE     14     55     47     63     53
D271V3, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              2               14
  CLUS_2              7               55
  CLUS_3              4               47
  CLUS_4              2               63
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD11 MUTATED        5      5      4      3
  BTBD11 WILD-TYPE     93     39     46     54
D271V4, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              5               93
  CLUS_2              5               39
  CLUS_3              4               46
  CLUS_4              3               54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD11 MUTATED       10      1      2      4      2
  BTBD11 WILD-TYPE     52     58     38     33     57
D271V5, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1             10               52
  CLUS_2              1               58
  CLUS_3              2               38
  CLUS_4              4               33
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTBD11 MUTATED        5      2     12
  BTBD11 WILD-TYPE    101     52     85
D271V6, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              5              101
  CLUS_2              2               52
  CLUS_3             12               85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTBD11 MUTATED       16      2      2
  BTBD11 WILD-TYPE    107     93     69
D271V7, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1             16              107
  CLUS_2              2               93
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTBD11 MUTATED       19      0      1
  BTBD11 WILD-TYPE    138     63     68
D271V8, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1             19              138
  CLUS_2              0               63
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BTBD11 MUTATED        0      6      4      3      1      0
  BTBD11 WILD-TYPE     33     13     55     36     15     45
D271V9, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              6               13
  CLUS_3              4               55
  CLUS_4              3               36
  CLUS_5              1               15
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BTBD11 MUTATED        5      0      4      4      1      0
  BTBD11 WILD-TYPE     42     39     31     28     22     35
D271V10, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              5               42
  CLUS_2              0               39
  CLUS_3              4               31
  CLUS_4              4               28
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(272) Variable = TRAM1L1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRAM1L1 MUTATED        1      8      2      1      1
  TRAM1L1 WILD-TYPE     78    118     25     42     11
D272V1, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               1                78
  CLUS_2               8               118
  CLUS_3               2                25
  CLUS_4               1                42
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAM1L1 MUTATED        0      8      2      0
  TRAM1L1 WILD-TYPE     71     68     32     63
D272V2, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               8                68
  CLUS_3               2                32
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRAM1L1 MUTATED        0      3      4      3      2
  TRAM1L1 WILD-TYPE     16     59     47     62     53
D272V3, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               3                59
  CLUS_3               4                47
  CLUS_4               3                62
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAM1L1 MUTATED        3      5      2      2
  TRAM1L1 WILD-TYPE     95     39     48     55
D272V4, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               3                95
  CLUS_2               5                39
  CLUS_3               2                48
  CLUS_4               2                55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRAM1L1 MUTATED        3      3      2      3      1
  TRAM1L1 WILD-TYPE     59     56     38     34     58
D272V5, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               3                59
  CLUS_2               3                56
  CLUS_3               2                38
  CLUS_4               3                34
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TRAM1L1 MUTATED        2      3      7
  TRAM1L1 WILD-TYPE    104     51     90
D272V6, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               2               104
  CLUS_2               3                51
  CLUS_3               7                90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TRAM1L1 MUTATED        8      3      2
  TRAM1L1 WILD-TYPE    115     92     69
D272V7, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               8               115
  CLUS_2               3                92
  CLUS_3               2                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TRAM1L1 MUTATED       10      2      1
  TRAM1L1 WILD-TYPE    147     61     68
D272V8, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1              10               147
  CLUS_2               2                61
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRAM1L1 MUTATED        1      1      4      2      1      1
  TRAM1L1 WILD-TYPE     32     18     55     37     15     44
D272V9, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                18
  CLUS_3               4                55
  CLUS_4               2                37
  CLUS_5               1                15
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRAM1L1 MUTATED        2      1      2      1      3      1
  TRAM1L1 WILD-TYPE     45     38     33     31     20     34
D272V10, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               2                45
  CLUS_2               1                38
  CLUS_3               2                33
  CLUS_4               1                31
  CLUS_5               3                20
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(273) Variable = WNT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNT1 MUTATED        2      5      0      0      0
  WNT1 WILD-TYPE     77    121     27     43     12
D273V1, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            2             77
  CLUS_2            5            121
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT1 MUTATED        2      4      2      0
  WNT1 WILD-TYPE     69     72     32     63
D273V2, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            4             72
  CLUS_3            2             32
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNT1 MUTATED        1      1      3      0      1
  WNT1 WILD-TYPE     15     61     48     65     54
D273V3, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            1             61
  CLUS_3            3             48
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT1 MUTATED        3      1      1      1
  WNT1 WILD-TYPE     95     43     49     56
D273V4, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            3             95
  CLUS_2            1             43
  CLUS_3            1             49
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNT1 MUTATED        3      1      1      2      1
  WNT1 WILD-TYPE     59     58     39     35     58
D273V5, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            3             59
  CLUS_2            1             58
  CLUS_3            1             39
  CLUS_4            2             35
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNT1 MUTATED        0      2      6
  WNT1 WILD-TYPE    106     52     91
D273V6, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            0            106
  CLUS_2            2             52
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNT1 MUTATED        5      1      2
  WNT1 WILD-TYPE    118     94     69
D273V7, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            5            118
  CLUS_2            1             94
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNT1 MUTATED        6      0      2
  WNT1 WILD-TYPE    151     63     67
D273V8, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            6            151
  CLUS_2            0             63
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WNT1 MUTATED        1      1      3      2      0      0
  WNT1 WILD-TYPE     32     18     56     37     16     45
D273V9, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            3             56
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WNT1 MUTATED        3      0      1      2      1      0
  WNT1 WILD-TYPE     44     39     34     30     22     35
D273V10, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            2             30
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(274) Variable = SCLT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCLT1 MUTATED        1     10      0      3      0
  SCLT1 WILD-TYPE     78    116     27     40     12
D274V1, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             1              78
  CLUS_2            10             116
  CLUS_3             0              27
  CLUS_4             3              40
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCLT1 MUTATED        2      5      0      1
  SCLT1 WILD-TYPE     69     71     34     62
D274V2, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             5              71
  CLUS_3             0              34
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCLT1 MUTATED        0      5      3      1      5
  SCLT1 WILD-TYPE     16     57     48     64     50
D274V3, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             5              57
  CLUS_3             3              48
  CLUS_4             1              64
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCLT1 MUTATED        3      7      2      2
  SCLT1 WILD-TYPE     95     37     48     55
D274V4, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             7              37
  CLUS_3             2              48
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCLT1 MUTATED        5      1      4      1      0
  SCLT1 WILD-TYPE     57     58     36     36     59
D274V5, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             1              58
  CLUS_3             4              36
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCLT1 MUTATED        2      0      9
  SCLT1 WILD-TYPE    104     54     88
D274V6, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             9              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCLT1 MUTATED       11      1      2
  SCLT1 WILD-TYPE    112     94     69
D274V7, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1            11             112
  CLUS_2             1              94
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCLT1 MUTATED       11      2      1
  SCLT1 WILD-TYPE    146     61     68
D274V8, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1            11             146
  CLUS_2             2              61
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SCLT1 MUTATED        0      1      2      2      0      0
  SCLT1 WILD-TYPE     33     18     57     37     16     45
D274V9, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              18
  CLUS_3             2              57
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SCLT1 MUTATED        2      0      2      1      0      0
  SCLT1 WILD-TYPE     45     39     33     31     23     35
D274V10, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(275) Variable = USP15 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP15 MUTATED        0      6      0      0      0
  USP15 WILD-TYPE     79    120     27     43     12
D275V1, multiclass
        clus
vv       USP15 MUTATED USP15 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP15 MUTATED        0      1      2      2
  USP15 WILD-TYPE     71     75     32     61
D275V2, multiclass
        clus
vv       USP15 MUTATED USP15 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             1              75
  CLUS_3             2              32
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP15 MUTATED        1      5      0      0      0
  USP15 WILD-TYPE     15     57     51     65     55
D275V3, multiclass
        clus
vv       USP15 MUTATED USP15 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             5              57
  CLUS_3             0              51
  CLUS_4             0              65
  CLUS_5             0              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP15 MUTATED        1      3      2      0
  USP15 WILD-TYPE     97     41     48     57
D275V4, multiclass
        clus
vv       USP15 MUTATED USP15 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             3              41
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP15 MUTATED        5      0      0      1      0
  USP15 WILD-TYPE     57     59     40     36     59
D275V5, multiclass
        clus
vv       USP15 MUTATED USP15 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP15 MUTATED        3      0      3
  USP15 WILD-TYPE    103     54     94
D275V6, multiclass
        clus
vv       USP15 MUTATED USP15 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP15 MUTATED        6      0      0
  USP15 WILD-TYPE    117     95     71
D275V7, multiclass
        clus
vv       USP15 MUTATED USP15 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP15 MUTATED        5      1      0
  USP15 WILD-TYPE    152     62     69
D275V8, multiclass
        clus
vv       USP15 MUTATED USP15 WILD-TYPE
  CLUS_1             5             152
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  USP15 MUTATED        1      0      3      0      0      0
  USP15 WILD-TYPE     32     19     56     39     16     45
D275V9, multiclass
        clus
vv       USP15 MUTATED USP15 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             3              56
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  USP15 MUTATED        1      0      3      0      0      0
  USP15 WILD-TYPE     46     39     32     32     23     35
D275V10, multiclass
        clus
vv       USP15 MUTATED USP15 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              39
  CLUS_3             3              32
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(276) Variable = NCAPH MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCAPH MUTATED        1      5      3      0      0
  NCAPH WILD-TYPE     78    121     24     43     12
D276V1, multiclass
        clus
vv       NCAPH MUTATED NCAPH WILD-TYPE
  CLUS_1             1              78
  CLUS_2             5             121
  CLUS_3             3              24
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAPH MUTATED        1      2      1      2
  NCAPH WILD-TYPE     70     74     33     61
D276V2, multiclass
        clus
vv       NCAPH MUTATED NCAPH WILD-TYPE
  CLUS_1             1              70
  CLUS_2             2              74
  CLUS_3             1              33
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCAPH MUTATED        3      3      1      1      1
  NCAPH WILD-TYPE     13     59     50     64     54
D276V3, multiclass
        clus
vv       NCAPH MUTATED NCAPH WILD-TYPE
  CLUS_1             3              13
  CLUS_2             3              59
  CLUS_3             1              50
  CLUS_4             1              64
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAPH MUTATED        3      3      2      1
  NCAPH WILD-TYPE     95     41     48     56
D276V4, multiclass
        clus
vv       NCAPH MUTATED NCAPH WILD-TYPE
  CLUS_1             3              95
  CLUS_2             3              41
  CLUS_3             2              48
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCAPH MUTATED        3      1      2      1      0
  NCAPH WILD-TYPE     59     58     38     36     59
D276V5, multiclass
        clus
vv       NCAPH MUTATED NCAPH WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              58
  CLUS_3             2              38
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCAPH MUTATED        3      0      4
  NCAPH WILD-TYPE    103     54     93
D276V6, multiclass
        clus
vv       NCAPH MUTATED NCAPH WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCAPH MUTATED        8      2      0
  NCAPH WILD-TYPE    115     93     71
D276V7, multiclass
        clus
vv       NCAPH MUTATED NCAPH WILD-TYPE
  CLUS_1             8             115
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCAPH MUTATED        7      2      1
  NCAPH WILD-TYPE    150     61     68
D276V8, multiclass
        clus
vv       NCAPH MUTATED NCAPH WILD-TYPE
  CLUS_1             7             150
  CLUS_2             2              61
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NCAPH MUTATED        2      0      3      0      0      1
  NCAPH WILD-TYPE     31     19     56     39     16     44
D276V9, multiclass
        clus
vv       NCAPH MUTATED NCAPH WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              19
  CLUS_3             3              56
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NCAPH MUTATED        2      1      3      0      0      0
  NCAPH WILD-TYPE     45     38     32     32     23     35
D276V10, multiclass
        clus
vv       NCAPH MUTATED NCAPH WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(277) Variable = CCDC108 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC108 MUTATED        1     20      1      2      0
  CCDC108 WILD-TYPE     78    106     26     41     12
D277V1, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1               1                78
  CLUS_2              20               106
  CLUS_3               1                26
  CLUS_4               2                41
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC108 MUTATED        1     13      3      2
  CCDC108 WILD-TYPE     70     63     31     61
D277V2, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1               1                70
  CLUS_2              13                63
  CLUS_3               3                31
  CLUS_4               2                61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC108 MUTATED        2      9      5      0      4
  CCDC108 WILD-TYPE     14     53     46     65     51
D277V3, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1               2                14
  CLUS_2               9                53
  CLUS_3               5                46
  CLUS_4               0                65
  CLUS_5               4                51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC108 MUTATED        7     10      3      0
  CCDC108 WILD-TYPE     91     34     47     57
D277V4, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1               7                91
  CLUS_2              10                34
  CLUS_3               3                47
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC108 MUTATED       16      0      3      4      0
  CCDC108 WILD-TYPE     46     59     37     33     59
D277V5, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1              16                46
  CLUS_2               0                59
  CLUS_3               3                37
  CLUS_4               4                33
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC108 MUTATED        4      0     19
  CCDC108 WILD-TYPE    102     54     78
D277V6, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1               4               102
  CLUS_2               0                54
  CLUS_3              19                78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC108 MUTATED       20      1      4
  CCDC108 WILD-TYPE    103     94     67
D277V7, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1              20               103
  CLUS_2               1                94
  CLUS_3               4                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC108 MUTATED       23      0      2
  CCDC108 WILD-TYPE    134     63     67
D277V8, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1              23               134
  CLUS_2               0                63
  CLUS_3               2                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC108 MUTATED        4      2      3      9      0      0
  CCDC108 WILD-TYPE     29     17     56     30     16     45
D277V9, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1               4                29
  CLUS_2               2                17
  CLUS_3               3                56
  CLUS_4               9                30
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC108 MUTATED        9      0      3      2      2      2
  CCDC108 WILD-TYPE     38     39     32     30     21     33
D277V10, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1               9                38
  CLUS_2               0                39
  CLUS_3               3                32
  CLUS_4               2                30
  CLUS_5               2                21
  CLUS_6               2                33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(278) Variable = FBXO48 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO48 MUTATED        0      2      1      0      0
  FBXO48 WILD-TYPE     79    124     26     43     12
D278V1, multiclass
        clus
vv       FBXO48 MUTATED FBXO48 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              2              124
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO48 MUTATED        0      3      0      0
  FBXO48 WILD-TYPE     71     73     34     63
D278V2, multiclass
        clus
vv       FBXO48 MUTATED FBXO48 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              3               73
  CLUS_3              0               34
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO48 MUTATED        1      2      0      0      0
  FBXO48 WILD-TYPE     15     60     51     65     55
D278V3, multiclass
        clus
vv       FBXO48 MUTATED FBXO48 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              2               60
  CLUS_3              0               51
  CLUS_4              0               65
  CLUS_5              0               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO48 MUTATED        1      1      1      0
  FBXO48 WILD-TYPE     97     43     49     57
D278V4, multiclass
        clus
vv       FBXO48 MUTATED FBXO48 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              1               43
  CLUS_3              1               49
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO48 MUTATED        2      0      1      1      0
  FBXO48 WILD-TYPE     60     59     39     36     59
D278V5, multiclass
        clus
vv       FBXO48 MUTATED FBXO48 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO48 MUTATED        0      0      4
  FBXO48 WILD-TYPE    106     54     93
D278V6, multiclass
        clus
vv       FBXO48 MUTATED FBXO48 WILD-TYPE
  CLUS_1              0              106
  CLUS_2              0               54
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO48 MUTATED        4      0      0
  FBXO48 WILD-TYPE    119     95     71
D278V7, multiclass
        clus
vv       FBXO48 MUTATED FBXO48 WILD-TYPE
  CLUS_1              4              119
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO48 MUTATED        4      0      0
  FBXO48 WILD-TYPE    153     63     69
D278V8, multiclass
        clus
vv       FBXO48 MUTATED FBXO48 WILD-TYPE
  CLUS_1              4              153
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBXO48 MUTATED        1      0      2      0      0      0
  FBXO48 WILD-TYPE     32     19     57     39     16     45
D278V9, multiclass
        clus
vv       FBXO48 MUTATED FBXO48 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               19
  CLUS_3              2               57
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBXO48 MUTATED        2      0      1      0      0      0
  FBXO48 WILD-TYPE     45     39     34     32     23     35
D278V10, multiclass
        clus
vv       FBXO48 MUTATED FBXO48 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(279) Variable = CROT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CROT MUTATED        0      9      0      2      0
  CROT WILD-TYPE     79    117     27     41     12
D279V1, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            0             79
  CLUS_2            9            117
  CLUS_3            0             27
  CLUS_4            2             41
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CROT MUTATED        0      5      2      2
  CROT WILD-TYPE     71     71     32     61
D279V2, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            0             71
  CLUS_2            5             71
  CLUS_3            2             32
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CROT MUTATED        1      4      2      0      3
  CROT WILD-TYPE     15     58     49     65     52
D279V3, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            1             15
  CLUS_2            4             58
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CROT MUTATED        3      6      1      0
  CROT WILD-TYPE     95     38     49     57
D279V4, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            3             95
  CLUS_2            6             38
  CLUS_3            1             49
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CROT MUTATED        7      0      1      2      0
  CROT WILD-TYPE     55     59     39     35     59
D279V5, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            7             55
  CLUS_2            0             59
  CLUS_3            1             39
  CLUS_4            2             35
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CROT MUTATED        3      0      7
  CROT WILD-TYPE    103     54     90
D279V6, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            3            103
  CLUS_2            0             54
  CLUS_3            7             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CROT MUTATED        9      1      1
  CROT WILD-TYPE    114     94     70
D279V7, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            9            114
  CLUS_2            1             94
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CROT MUTATED       10      0      1
  CROT WILD-TYPE    147     63     68
D279V8, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1           10            147
  CLUS_2            0             63
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CROT MUTATED        2      1      1      2      0      0
  CROT WILD-TYPE     31     18     58     37     16     45
D279V9, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             18
  CLUS_3            1             58
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CROT MUTATED        3      0      1      1      0      1
  CROT WILD-TYPE     44     39     34     31     23     34
D279V10, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            3             44
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            1             31
  CLUS_5            0             23
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(280) Variable = BRSK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRSK1 MUTATED        1      8      0      2      0
  BRSK1 WILD-TYPE     78    118     27     41     12
D280V1, multiclass
        clus
vv       BRSK1 MUTATED BRSK1 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             8             118
  CLUS_3             0              27
  CLUS_4             2              41
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRSK1 MUTATED        1      4      3      3
  BRSK1 WILD-TYPE     70     72     31     60
D280V2, multiclass
        clus
vv       BRSK1 MUTATED BRSK1 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             4              72
  CLUS_3             3              31
  CLUS_4             3              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRSK1 MUTATED        0      4      3      1      3
  BRSK1 WILD-TYPE     16     58     48     64     52
D280V3, multiclass
        clus
vv       BRSK1 MUTATED BRSK1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             4              58
  CLUS_3             3              48
  CLUS_4             1              64
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRSK1 MUTATED        2      6      3      0
  BRSK1 WILD-TYPE     96     38     47     57
D280V4, multiclass
        clus
vv       BRSK1 MUTATED BRSK1 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             6              38
  CLUS_3             3              47
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRSK1 MUTATED        6      2      1      2      1
  BRSK1 WILD-TYPE     56     57     39     35     58
D280V5, multiclass
        clus
vv       BRSK1 MUTATED BRSK1 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             2              57
  CLUS_3             1              39
  CLUS_4             2              35
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRSK1 MUTATED        4      2      6
  BRSK1 WILD-TYPE    102     52     91
D280V6, multiclass
        clus
vv       BRSK1 MUTATED BRSK1 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             2              52
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRSK1 MUTATED       10      2      0
  BRSK1 WILD-TYPE    113     93     71
D280V7, multiclass
        clus
vv       BRSK1 MUTATED BRSK1 WILD-TYPE
  CLUS_1            10             113
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRSK1 MUTATED        9      3      0
  BRSK1 WILD-TYPE    148     60     69
D280V8, multiclass
        clus
vv       BRSK1 MUTATED BRSK1 WILD-TYPE
  CLUS_1             9             148
  CLUS_2             3              60
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BRSK1 MUTATED        1      1      4      3      0      1
  BRSK1 WILD-TYPE     32     18     55     36     16     44
D280V9, multiclass
        clus
vv       BRSK1 MUTATED BRSK1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             4              55
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BRSK1 MUTATED        2      1      2      3      2      0
  BRSK1 WILD-TYPE     45     38     33     29     21     35
D280V10, multiclass
        clus
vv       BRSK1 MUTATED BRSK1 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              38
  CLUS_3             2              33
  CLUS_4             3              29
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(281) Variable = C1QA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1QA MUTATED        0      5      0      0      0
  C1QA WILD-TYPE     79    121     27     43     12
D281V1, multiclass
        clus
vv       C1QA MUTATED C1QA WILD-TYPE
  CLUS_1            0             79
  CLUS_2            5            121
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1QA MUTATED        0      3      1      1
  C1QA WILD-TYPE     71     73     33     62
D281V2, multiclass
        clus
vv       C1QA MUTATED C1QA WILD-TYPE
  CLUS_1            0             71
  CLUS_2            3             73
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1QA MUTATED        0      3      0      0      0
  C1QA WILD-TYPE     16     59     51     65     55
D281V3, multiclass
        clus
vv       C1QA MUTATED C1QA WILD-TYPE
  CLUS_1            0             16
  CLUS_2            3             59
  CLUS_3            0             51
  CLUS_4            0             65
  CLUS_5            0             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1QA MUTATED        0      1      2      0
  C1QA WILD-TYPE     98     43     48     57
D281V4, multiclass
        clus
vv       C1QA MUTATED C1QA WILD-TYPE
  CLUS_1            0             98
  CLUS_2            1             43
  CLUS_3            2             48
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1QA MUTATED        3      0      0      1      0
  C1QA WILD-TYPE     59     59     40     36     59
D281V5, multiclass
        clus
vv       C1QA MUTATED C1QA WILD-TYPE
  CLUS_1            3             59
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  C1QA MUTATED        1      0      3
  C1QA WILD-TYPE    105     54     94
D281V6, multiclass
        clus
vv       C1QA MUTATED C1QA WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            3             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  C1QA MUTATED        4      1      0
  C1QA WILD-TYPE    119     94     71
D281V7, multiclass
        clus
vv       C1QA MUTATED C1QA WILD-TYPE
  CLUS_1            4            119
  CLUS_2            1             94
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  C1QA MUTATED        3      2      0
  C1QA WILD-TYPE    154     61     69
D281V8, multiclass
        clus
vv       C1QA MUTATED C1QA WILD-TYPE
  CLUS_1            3            154
  CLUS_2            2             61
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C1QA MUTATED        1      0      2      2      0      0
  C1QA WILD-TYPE     32     19     57     37     16     45
D281V9, multiclass
        clus
vv       C1QA MUTATED C1QA WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             19
  CLUS_3            2             57
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C1QA MUTATED        2      0      2      0      1      0
  C1QA WILD-TYPE     45     39     33     32     22     35
D281V10, multiclass
        clus
vv       C1QA MUTATED C1QA WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            2             33
  CLUS_4            0             32
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(282) Variable = PRMT8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRMT8 MUTATED        0      8      0      0      0
  PRMT8 WILD-TYPE     79    118     27     43     12
D282V1, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             8             118
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRMT8 MUTATED        0      5      0      2
  PRMT8 WILD-TYPE     71     71     34     61
D282V2, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             5              71
  CLUS_3             0              34
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRMT8 MUTATED        1      3      2      0      1
  PRMT8 WILD-TYPE     15     59     49     65     54
D282V3, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3              59
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRMT8 MUTATED        2      3      2      0
  PRMT8 WILD-TYPE     96     41     48     57
D282V4, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             3              41
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRMT8 MUTATED        5      1      0      1      0
  PRMT8 WILD-TYPE     57     58     40     36     59
D282V5, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRMT8 MUTATED        3      0      4
  PRMT8 WILD-TYPE    103     54     93
D282V6, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRMT8 MUTATED        8      0      0
  PRMT8 WILD-TYPE    115     95     71
D282V7, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRMT8 MUTATED        7      1      0
  PRMT8 WILD-TYPE    150     62     69
D282V8, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             7             150
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRMT8 MUTATED        3      1      3      0      0      0
  PRMT8 WILD-TYPE     30     18     56     39     16     45
D282V9, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             1              18
  CLUS_3             3              56
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRMT8 MUTATED        4      0      3      0      0      0
  PRMT8 WILD-TYPE     43     39     32     32     23     35
D282V10, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             0              39
  CLUS_3             3              32
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(283) Variable = PLEKHO1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHO1 MUTATED        0      6      0      1      0
  PLEKHO1 WILD-TYPE     79    120     27     42     12
D283V1, multiclass
        clus
vv       PLEKHO1 MUTATED PLEKHO1 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               6               120
  CLUS_3               0                27
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHO1 MUTATED        0      2      2      1
  PLEKHO1 WILD-TYPE     71     74     32     62
D283V2, multiclass
        clus
vv       PLEKHO1 MUTATED PLEKHO1 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               2                74
  CLUS_3               2                32
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHO1 MUTATED        0      3      2      0      2
  PLEKHO1 WILD-TYPE     16     59     49     65     53
D283V3, multiclass
        clus
vv       PLEKHO1 MUTATED PLEKHO1 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               3                59
  CLUS_3               2                49
  CLUS_4               0                65
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHO1 MUTATED        0      4      2      1
  PLEKHO1 WILD-TYPE     98     40     48     56
D283V4, multiclass
        clus
vv       PLEKHO1 MUTATED PLEKHO1 WILD-TYPE
  CLUS_1               0                98
  CLUS_2               4                40
  CLUS_3               2                48
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHO1 MUTATED        4      1      1      1      0
  PLEKHO1 WILD-TYPE     58     58     39     36     59
D283V5, multiclass
        clus
vv       PLEKHO1 MUTATED PLEKHO1 WILD-TYPE
  CLUS_1               4                58
  CLUS_2               1                58
  CLUS_3               1                39
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHO1 MUTATED        4      0      3
  PLEKHO1 WILD-TYPE    102     54     94
D283V6, multiclass
        clus
vv       PLEKHO1 MUTATED PLEKHO1 WILD-TYPE
  CLUS_1               4               102
  CLUS_2               0                54
  CLUS_3               3                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHO1 MUTATED        7      0      0
  PLEKHO1 WILD-TYPE    116     95     71
D283V7, multiclass
        clus
vv       PLEKHO1 MUTATED PLEKHO1 WILD-TYPE
  CLUS_1               7               116
  CLUS_2               0                95
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHO1 MUTATED        6      1      0
  PLEKHO1 WILD-TYPE    151     62     69
D283V8, multiclass
        clus
vv       PLEKHO1 MUTATED PLEKHO1 WILD-TYPE
  CLUS_1               6               151
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLEKHO1 MUTATED        1      0      3      0      0      0
  PLEKHO1 WILD-TYPE     32     19     56     39     16     45
D283V9, multiclass
        clus
vv       PLEKHO1 MUTATED PLEKHO1 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                19
  CLUS_3               3                56
  CLUS_4               0                39
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLEKHO1 MUTATED        1      0      1      1      1      0
  PLEKHO1 WILD-TYPE     46     39     34     31     22     35
D283V10, multiclass
        clus
vv       PLEKHO1 MUTATED PLEKHO1 WILD-TYPE
  CLUS_1               1                46
  CLUS_2               0                39
  CLUS_3               1                34
  CLUS_4               1                31
  CLUS_5               1                22
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(284) Variable = EOMES MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EOMES MUTATED        0      8      0      0      0
  EOMES WILD-TYPE     79    118     27     43     12
D284V1, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             0              79
  CLUS_2             8             118
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EOMES MUTATED        0      3      2      0
  EOMES WILD-TYPE     71     73     32     63
D284V2, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             0              71
  CLUS_2             3              73
  CLUS_3             2              32
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EOMES MUTATED        0      2      1      1      3
  EOMES WILD-TYPE     16     60     50     64     52
D284V3, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             1              50
  CLUS_4             1              64
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EOMES MUTATED        3      2      1      1
  EOMES WILD-TYPE     95     42     49     56
D284V4, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             3              95
  CLUS_2             2              42
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EOMES MUTATED        3      3      1      0      0
  EOMES WILD-TYPE     59     56     39     37     59
D284V5, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             3              59
  CLUS_2             3              56
  CLUS_3             1              39
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EOMES MUTATED        2      2      3
  EOMES WILD-TYPE    104     52     94
D284V6, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             2             104
  CLUS_2             2              52
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EOMES MUTATED        4      3      1
  EOMES WILD-TYPE    119     92     70
D284V7, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             4             119
  CLUS_2             3              92
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EOMES MUTATED        4      3      1
  EOMES WILD-TYPE    153     60     68
D284V8, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             4             153
  CLUS_2             3              60
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EOMES MUTATED        1      0      1      2      0      1
  EOMES WILD-TYPE     32     19     58     37     16     44
D284V9, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             1              58
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EOMES MUTATED        2      1      1      0      1      0
  EOMES WILD-TYPE     45     38     34     32     22     35
D284V10, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              38
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(285) Variable = FYB MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FYB MUTATED        1      8      0      1      1
  FYB WILD-TYPE     78    118     27     42     11
D285V1, multiclass
        clus
vv       FYB MUTATED FYB WILD-TYPE
  CLUS_1           1            78
  CLUS_2           8           118
  CLUS_3           0            27
  CLUS_4           1            42
  CLUS_5           1            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FYB MUTATED        1      7      1      0
  FYB WILD-TYPE     70     69     33     63
D285V2, multiclass
        clus
vv       FYB MUTATED FYB WILD-TYPE
  CLUS_1           1            70
  CLUS_2           7            69
  CLUS_3           1            33
  CLUS_4           0            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FYB MUTATED        0      2      3      0      4
  FYB WILD-TYPE     16     60     48     65     51
D285V3, multiclass
        clus
vv       FYB MUTATED FYB WILD-TYPE
  CLUS_1           0            16
  CLUS_2           2            60
  CLUS_3           3            48
  CLUS_4           0            65
  CLUS_5           4            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FYB MUTATED        1      7      1      0
  FYB WILD-TYPE     97     37     49     57
D285V4, multiclass
        clus
vv       FYB MUTATED FYB WILD-TYPE
  CLUS_1           1            97
  CLUS_2           7            37
  CLUS_3           1            49
  CLUS_4           0            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FYB MUTATED        7      1      1      1      1
  FYB WILD-TYPE     55     58     39     36     58
D285V5, multiclass
        clus
vv       FYB MUTATED FYB WILD-TYPE
  CLUS_1           7            55
  CLUS_2           1            58
  CLUS_3           1            39
  CLUS_4           1            36
  CLUS_5           1            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FYB MUTATED        2      0      9
  FYB WILD-TYPE    104     54     88
D285V6, multiclass
        clus
vv       FYB MUTATED FYB WILD-TYPE
  CLUS_1           2           104
  CLUS_2           0            54
  CLUS_3           9            88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FYB MUTATED        8      0      3
  FYB WILD-TYPE    115     95     68
D285V7, multiclass
        clus
vv       FYB MUTATED FYB WILD-TYPE
  CLUS_1           8           115
  CLUS_2           0            95
  CLUS_3           3            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FYB MUTATED       10      0      1
  FYB WILD-TYPE    147     63     68
D285V8, multiclass
        clus
vv       FYB MUTATED FYB WILD-TYPE
  CLUS_1          10           147
  CLUS_2           0            63
  CLUS_3           1            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FYB MUTATED        1      1      3      3      0      0
  FYB WILD-TYPE     32     18     56     36     16     45
D285V9, multiclass
        clus
vv       FYB MUTATED FYB WILD-TYPE
  CLUS_1           1            32
  CLUS_2           1            18
  CLUS_3           3            56
  CLUS_4           3            36
  CLUS_5           0            16
  CLUS_6           0            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FYB MUTATED        4      0      2      2      0      0
  FYB WILD-TYPE     43     39     33     30     23     35
D285V10, multiclass
        clus
vv       FYB MUTATED FYB WILD-TYPE
  CLUS_1           4            43
  CLUS_2           0            39
  CLUS_3           2            33
  CLUS_4           2            30
  CLUS_5           0            23
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(286) Variable = SDAD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SDAD1 MUTATED        0      6      0      1      0
  SDAD1 WILD-TYPE     79    120     27     42     12
D286V1, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SDAD1 MUTATED        0      4      1      0
  SDAD1 WILD-TYPE     71     72     33     63
D286V2, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             4              72
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SDAD1 MUTATED        0      2      3      0      2
  SDAD1 WILD-TYPE     16     60     48     65     53
D286V3, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SDAD1 MUTATED        1      4      2      0
  SDAD1 WILD-TYPE     97     40     48     57
D286V4, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             4              40
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SDAD1 MUTATED        3      1      1      1      0
  SDAD1 WILD-TYPE     59     58     39     36     59
D286V5, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SDAD1 MUTATED        0      2      4
  SDAD1 WILD-TYPE    106     52     93
D286V6, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             2              52
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SDAD1 MUTATED        5      2      0
  SDAD1 WILD-TYPE    118     93     71
D286V7, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             5             118
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SDAD1 MUTATED        6      1      0
  SDAD1 WILD-TYPE    151     62     69
D286V8, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SDAD1 MUTATED        0      0      1      2      0      0
  SDAD1 WILD-TYPE     33     19     58     37     16     45
D286V9, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              19
  CLUS_3             1              58
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SDAD1 MUTATED        0      0      1      0      2      0
  SDAD1 WILD-TYPE     47     39     34     32     21     35
D286V10, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(287) Variable = IKBKE MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IKBKE MUTATED        0     10      1      1      0
  IKBKE WILD-TYPE     79    116     26     42     12
D287V1, multiclass
        clus
vv       IKBKE MUTATED IKBKE WILD-TYPE
  CLUS_1             0              79
  CLUS_2            10             116
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKBKE MUTATED        2      7      0      1
  IKBKE WILD-TYPE     69     69     34     62
D287V2, multiclass
        clus
vv       IKBKE MUTATED IKBKE WILD-TYPE
  CLUS_1             2              69
  CLUS_2             7              69
  CLUS_3             0              34
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IKBKE MUTATED        0      1      4      1      5
  IKBKE WILD-TYPE     16     61     47     64     50
D287V3, multiclass
        clus
vv       IKBKE MUTATED IKBKE WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              61
  CLUS_3             4              47
  CLUS_4             1              64
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKBKE MUTATED        3      6      1      1
  IKBKE WILD-TYPE     95     38     49     56
D287V4, multiclass
        clus
vv       IKBKE MUTATED IKBKE WILD-TYPE
  CLUS_1             3              95
  CLUS_2             6              38
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IKBKE MUTATED        3      0      3      5      0
  IKBKE WILD-TYPE     59     59     37     32     59
D287V5, multiclass
        clus
vv       IKBKE MUTATED IKBKE WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              59
  CLUS_3             3              37
  CLUS_4             5              32
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IKBKE MUTATED        2      0      9
  IKBKE WILD-TYPE    104     54     88
D287V6, multiclass
        clus
vv       IKBKE MUTATED IKBKE WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             9              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IKBKE MUTATED       10      2      0
  IKBKE WILD-TYPE    113     93     71
D287V7, multiclass
        clus
vv       IKBKE MUTATED IKBKE WILD-TYPE
  CLUS_1            10             113
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IKBKE MUTATED       12      0      0
  IKBKE WILD-TYPE    145     63     69
D287V8, multiclass
        clus
vv       IKBKE MUTATED IKBKE WILD-TYPE
  CLUS_1            12             145
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IKBKE MUTATED        2      3      3      2      0      0
  IKBKE WILD-TYPE     31     16     56     37     16     45
D287V9, multiclass
        clus
vv       IKBKE MUTATED IKBKE WILD-TYPE
  CLUS_1             2              31
  CLUS_2             3              16
  CLUS_3             3              56
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IKBKE MUTATED        4      0      3      3      0      0
  IKBKE WILD-TYPE     43     39     32     29     23     35
D287V10, multiclass
        clus
vv       IKBKE MUTATED IKBKE WILD-TYPE
  CLUS_1             4              43
  CLUS_2             0              39
  CLUS_3             3              32
  CLUS_4             3              29
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(288) Variable = CADPS2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CADPS2 MUTATED        2      5      2      1      0
  CADPS2 WILD-TYPE     77    121     25     42     12
D288V1, multiclass
        clus
vv       CADPS2 MUTATED CADPS2 WILD-TYPE
  CLUS_1              2               77
  CLUS_2              5              121
  CLUS_3              2               25
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CADPS2 MUTATED        2      6      2      0
  CADPS2 WILD-TYPE     69     70     32     63
D288V2, multiclass
        clus
vv       CADPS2 MUTATED CADPS2 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              6               70
  CLUS_3              2               32
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CADPS2 MUTATED        0      5      2      0      1
  CADPS2 WILD-TYPE     16     57     49     65     54
D288V3, multiclass
        clus
vv       CADPS2 MUTATED CADPS2 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              5               57
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CADPS2 MUTATED        1      5      2      0
  CADPS2 WILD-TYPE     97     39     48     57
D288V4, multiclass
        clus
vv       CADPS2 MUTATED CADPS2 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              5               39
  CLUS_3              2               48
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CADPS2 MUTATED        5      0      1      2      1
  CADPS2 WILD-TYPE     57     59     39     35     58
D288V5, multiclass
        clus
vv       CADPS2 MUTATED CADPS2 WILD-TYPE
  CLUS_1              5               57
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              2               35
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CADPS2 MUTATED        1      0      8
  CADPS2 WILD-TYPE    105     54     89
D288V6, multiclass
        clus
vv       CADPS2 MUTATED CADPS2 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               54
  CLUS_3              8               89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CADPS2 MUTATED        8      1      2
  CADPS2 WILD-TYPE    115     94     69
D288V7, multiclass
        clus
vv       CADPS2 MUTATED CADPS2 WILD-TYPE
  CLUS_1              8              115
  CLUS_2              1               94
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CADPS2 MUTATED        8      1      2
  CADPS2 WILD-TYPE    149     62     67
D288V8, multiclass
        clus
vv       CADPS2 MUTATED CADPS2 WILD-TYPE
  CLUS_1              8              149
  CLUS_2              1               62
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CADPS2 MUTATED        3      1      2      3      0      1
  CADPS2 WILD-TYPE     30     18     57     36     16     44
D288V9, multiclass
        clus
vv       CADPS2 MUTATED CADPS2 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              3               36
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CADPS2 MUTATED        6      1      1      1      1      0
  CADPS2 WILD-TYPE     41     38     34     31     22     35
D288V10, multiclass
        clus
vv       CADPS2 MUTATED CADPS2 WILD-TYPE
  CLUS_1              6               41
  CLUS_2              1               38
  CLUS_3              1               34
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(289) Variable = IL2RG MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IL2RG MUTATED        0      6      0      0      0
  IL2RG WILD-TYPE     79    120     27     43     12
D289V1, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL2RG MUTATED        0      5      0      0
  IL2RG WILD-TYPE     71     71     34     63
D289V2, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             0              71
  CLUS_2             5              71
  CLUS_3             0              34
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IL2RG MUTATED        0      2      1      0      3
  IL2RG WILD-TYPE     16     60     50     65     52
D289V3, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL2RG MUTATED        1      4      1      0
  IL2RG WILD-TYPE     97     40     49     57
D289V4, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             1              97
  CLUS_2             4              40
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IL2RG MUTATED        2      0      2      0      0
  IL2RG WILD-TYPE     60     59     38     37     59
D289V5, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              59
  CLUS_3             2              38
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL2RG MUTATED        1      0      3
  IL2RG WILD-TYPE    105     54     94
D289V6, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL2RG MUTATED        5      1      0
  IL2RG WILD-TYPE    118     94     71
D289V7, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             5             118
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL2RG MUTATED        5      1      0
  IL2RG WILD-TYPE    152     62     69
D289V8, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             5             152
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IL2RG MUTATED        1      0      3      1      0      0
  IL2RG WILD-TYPE     32     19     56     38     16     45
D289V9, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             3              56
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IL2RG MUTATED        1      0      2      2      0      0
  IL2RG WILD-TYPE     46     39     33     30     23     35
D289V10, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             2              30
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(290) Variable = TBL1XR1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBL1XR1 MUTATED        0      3      1      1      0
  TBL1XR1 WILD-TYPE     79    123     26     42     12
D290V1, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               3               123
  CLUS_3               1                26
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBL1XR1 MUTATED        0      2      1      0
  TBL1XR1 WILD-TYPE     71     74     33     63
D290V2, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               2                74
  CLUS_3               1                33
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBL1XR1 MUTATED        1      0      0      2      1
  TBL1XR1 WILD-TYPE     15     62     51     63     54
D290V3, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               0                62
  CLUS_3               0                51
  CLUS_4               2                63
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBL1XR1 MUTATED        1      1      0      2
  TBL1XR1 WILD-TYPE     97     43     50     55
D290V4, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               1                43
  CLUS_3               0                50
  CLUS_4               2                55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBL1XR1 MUTATED        2      2      1      1      0
  TBL1XR1 WILD-TYPE     60     57     39     36     59
D290V5, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               2                60
  CLUS_2               2                57
  CLUS_3               1                39
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TBL1XR1 MUTATED        1      1      4
  TBL1XR1 WILD-TYPE    105     53     93
D290V6, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               1                53
  CLUS_3               4                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TBL1XR1 MUTATED        5      1      0
  TBL1XR1 WILD-TYPE    118     94     71
D290V7, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               5               118
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TBL1XR1 MUTATED        5      1      0
  TBL1XR1 WILD-TYPE    152     62     69
D290V8, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               5               152
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TBL1XR1 MUTATED        1      0      1      1      0      0
  TBL1XR1 WILD-TYPE     32     19     58     38     16     45
D290V9, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                19
  CLUS_3               1                58
  CLUS_4               1                38
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TBL1XR1 MUTATED        1      0      1      0      1      0
  TBL1XR1 WILD-TYPE     46     39     34     32     22     35
D290V10, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               1                46
  CLUS_2               0                39
  CLUS_3               1                34
  CLUS_4               0                32
  CLUS_5               1                22
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(291) Variable = ASPN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASPN MUTATED        0      5      0      0      0
  ASPN WILD-TYPE     79    121     27     43     12
D291V1, multiclass
        clus
vv       ASPN MUTATED ASPN WILD-TYPE
  CLUS_1            0             79
  CLUS_2            5            121
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASPN MUTATED        0      3      1      0
  ASPN WILD-TYPE     71     73     33     63
D291V2, multiclass
        clus
vv       ASPN MUTATED ASPN WILD-TYPE
  CLUS_1            0             71
  CLUS_2            3             73
  CLUS_3            1             33
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASPN MUTATED        0      1      2      0      2
  ASPN WILD-TYPE     16     61     49     65     53
D291V3, multiclass
        clus
vv       ASPN MUTATED ASPN WILD-TYPE
  CLUS_1            0             16
  CLUS_2            1             61
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASPN MUTATED        1      3      1      0
  ASPN WILD-TYPE     97     41     49     57
D291V4, multiclass
        clus
vv       ASPN MUTATED ASPN WILD-TYPE
  CLUS_1            1             97
  CLUS_2            3             41
  CLUS_3            1             49
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASPN MUTATED        3      0      1      1      0
  ASPN WILD-TYPE     59     59     39     36     59
D291V5, multiclass
        clus
vv       ASPN MUTATED ASPN WILD-TYPE
  CLUS_1            3             59
  CLUS_2            0             59
  CLUS_3            1             39
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ASPN MUTATED        0      0      5
  ASPN WILD-TYPE    106     54     92
D291V6, multiclass
        clus
vv       ASPN MUTATED ASPN WILD-TYPE
  CLUS_1            0            106
  CLUS_2            0             54
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ASPN MUTATED        5      0      0
  ASPN WILD-TYPE    118     95     71
D291V7, multiclass
        clus
vv       ASPN MUTATED ASPN WILD-TYPE
  CLUS_1            5            118
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ASPN MUTATED        4      0      1
  ASPN WILD-TYPE    153     63     68
D291V8, multiclass
        clus
vv       ASPN MUTATED ASPN WILD-TYPE
  CLUS_1            4            153
  CLUS_2            0             63
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ASPN MUTATED        1      1      0      1      0      0
  ASPN WILD-TYPE     32     18     59     38     16     45
D291V9, multiclass
        clus
vv       ASPN MUTATED ASPN WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            0             59
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ASPN MUTATED        0      0      0      2      1      0
  ASPN WILD-TYPE     47     39     35     30     22     35
D291V10, multiclass
        clus
vv       ASPN MUTATED ASPN WILD-TYPE
  CLUS_1            0             47
  CLUS_2            0             39
  CLUS_3            0             35
  CLUS_4            2             30
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(292) Variable = GLT8D1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLT8D1 MUTATED        0      7      1      0      0
  GLT8D1 WILD-TYPE     79    119     26     43     12
D292V1, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              7              119
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLT8D1 MUTATED        0      3      2      0
  GLT8D1 WILD-TYPE     71     73     32     63
D292V2, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              3               73
  CLUS_3              2               32
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLT8D1 MUTATED        1      2      2      0      2
  GLT8D1 WILD-TYPE     15     60     49     65     53
D292V3, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              2               60
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLT8D1 MUTATED        1      4      1      1
  GLT8D1 WILD-TYPE     97     40     49     56
D292V4, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              4               40
  CLUS_3              1               49
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLT8D1 MUTATED        4      0      3      1      0
  GLT8D1 WILD-TYPE     58     59     37     36     59
D292V5, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              0               59
  CLUS_3              3               37
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLT8D1 MUTATED        4      0      4
  GLT8D1 WILD-TYPE    102     54     93
D292V6, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              4              102
  CLUS_2              0               54
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLT8D1 MUTATED        8      0      0
  GLT8D1 WILD-TYPE    115     95     71
D292V7, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              8              115
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLT8D1 MUTATED        8      0      0
  GLT8D1 WILD-TYPE    149     63     69
D292V8, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              8              149
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GLT8D1 MUTATED        0      2      3      0      0      0
  GLT8D1 WILD-TYPE     33     17     56     39     16     45
D292V9, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              2               17
  CLUS_3              3               56
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GLT8D1 MUTATED        1      0      2      1      1      0
  GLT8D1 WILD-TYPE     46     39     33     31     22     35
D292V10, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(293) Variable = KDELR3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDELR3 MUTATED        1      2      0      0      0
  KDELR3 WILD-TYPE     78    124     27     43     12
D293V1, multiclass
        clus
vv       KDELR3 MUTATED KDELR3 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              2              124
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDELR3 MUTATED        1      1      1      0
  KDELR3 WILD-TYPE     70     75     33     63
D293V2, multiclass
        clus
vv       KDELR3 MUTATED KDELR3 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              1               75
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDELR3 MUTATED        0      1      2      0      0
  KDELR3 WILD-TYPE     16     61     49     65     55
D293V3, multiclass
        clus
vv       KDELR3 MUTATED KDELR3 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              1               61
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              0               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDELR3 MUTATED        1      2      0      0
  KDELR3 WILD-TYPE     97     42     50     57
D293V4, multiclass
        clus
vv       KDELR3 MUTATED KDELR3 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              2               42
  CLUS_3              0               50
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDELR3 MUTATED        2      0      0      0      0
  KDELR3 WILD-TYPE     60     59     40     37     59
D293V5, multiclass
[1] "Remove cluster labels:" "KDELR3 MUTATED"        
clus
  KDELR3 MUTATED KDELR3 WILD-TYPE 
               2              255 
      TCGA-B7-5818       TCGA-BR-4187       TCGA-BR-4191       TCGA-BR-4201 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256       TCGA-BR-4257 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280       TCGA-BR-4292 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-4294       TCGA-BR-4357       TCGA-BR-4361       TCGA-BR-4362 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-4363       TCGA-BR-4366       TCGA-BR-4368       TCGA-BR-4369 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-4370       TCGA-BR-4371       TCGA-BR-6453       TCGA-BR-6454 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457       TCGA-BR-6458 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6710 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-7715       TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-8077       TCGA-BR-8078       TCGA-BR-8080       TCGA-BR-8081 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289       TCGA-BR-8291 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-8297       TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-8369       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-8483       TCGA-BR-8484       TCGA-BR-8485       TCGA-BR-8486 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-8487       TCGA-BR-8588       TCGA-BR-8589       TCGA-BR-8590 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8677       TCGA-BR-8678 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-8686       TCGA-BR-8687       TCGA-BR-A44T       TCGA-BR-A452 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-A453       TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-A4IV       TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-A4J2       TCGA-BR-A4J4       TCGA-BR-A4J6       TCGA-BR-A4J7 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4PE       TCGA-BR-A4PF 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-A4QI       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5803       TCGA-CD-5804       TCGA-CD-5813 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CD-8524       TCGA-CD-8526       TCGA-CD-8528       TCGA-CD-8529 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8534 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CD-A489       TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4301       TCGA-CG-4304 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4442 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4462 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4474 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CG-4475       TCGA-CG-4476       TCGA-CG-4477       TCGA-CG-5717 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5726 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CG-5732       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-D7-8572       TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8575 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-D7-8576       TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-D7-A4Z0       TCGA-EQ-8122       TCGA-EQ-A4SO       TCGA-F1-6177 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7735 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998       TCGA-FP-8099 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-FP-8209       TCGA-FP-8210       TCGA-FP-8211       TCGA-FP-8631 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-FP-A4BE       TCGA-HF-7132       TCGA-HF-7133       TCGA-HF-7136 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-HU-8602       TCGA-HU-8604       TCGA-HU-8608       TCGA-HU-8610 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-HU-A4G2       TCGA-HU-A4G3       TCGA-HU-A4G6       TCGA-HU-A4G8 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-HU-A4G9       TCGA-HU-A4GC       TCGA-HU-A4GF       TCGA-HU-A4GH 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-HU-A4GN       TCGA-HU-A4GP       TCGA-HU-A4GT       TCGA-HU-A4GU 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H0       TCGA-HU-A4H2 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-HU-A4H8       TCGA-HU-A4HD       TCGA-IN-7806       TCGA-IN-7808 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-IN-8462       TCGA-IN-8663       TCGA-IP-7968 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KDELR3 MUTATED        1      0      1
  KDELR3 WILD-TYPE    105     54     96
D293V6, multiclass
[1] "Remove cluster labels:" "KDELR3 MUTATED"        
clus
  KDELR3 MUTATED KDELR3 WILD-TYPE 
               2              255 
      TCGA-B7-5818       TCGA-BR-4187       TCGA-BR-4191       TCGA-BR-4201 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256       TCGA-BR-4257 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280       TCGA-BR-4292 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-4294       TCGA-BR-4357       TCGA-BR-4361       TCGA-BR-4362 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-4363       TCGA-BR-4366       TCGA-BR-4368       TCGA-BR-4369 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-4370       TCGA-BR-4371       TCGA-BR-6453       TCGA-BR-6454 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457       TCGA-BR-6458 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6710 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-7715       TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-8077       TCGA-BR-8078       TCGA-BR-8080       TCGA-BR-8081 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289       TCGA-BR-8291 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-8297       TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-8369       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-8483       TCGA-BR-8484       TCGA-BR-8485       TCGA-BR-8486 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-8487       TCGA-BR-8588       TCGA-BR-8589       TCGA-BR-8590 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8677       TCGA-BR-8678 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-8686       TCGA-BR-8687       TCGA-BR-A44T       TCGA-BR-A452 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-A453       TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-A4IV       TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-A4J2       TCGA-BR-A4J4       TCGA-BR-A4J6       TCGA-BR-A4J7 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4PE       TCGA-BR-A4PF 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-BR-A4QI       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5803       TCGA-CD-5804       TCGA-CD-5813 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CD-8524       TCGA-CD-8526       TCGA-CD-8528       TCGA-CD-8529 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8534 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CD-A489       TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4301       TCGA-CG-4304 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441       TCGA-CG-4442 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4462 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4474 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CG-4475       TCGA-CG-4476       TCGA-CG-4477       TCGA-CG-5717 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5726 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-CG-5732       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-D7-8572       TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8575 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-D7-8576       TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-D7-A4Z0       TCGA-EQ-8122       TCGA-EQ-A4SO       TCGA-F1-6177 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7735 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998       TCGA-FP-8099 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-FP-8209       TCGA-FP-8210       TCGA-FP-8211       TCGA-FP-8631 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-FP-A4BE       TCGA-HF-7132       TCGA-HF-7133       TCGA-HF-7136 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-HU-8602       TCGA-HU-8604       TCGA-HU-8608       TCGA-HU-8610 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-HU-A4G2       TCGA-HU-A4G3       TCGA-HU-A4G6       TCGA-HU-A4G8 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-HU-A4G9       TCGA-HU-A4GC       TCGA-HU-A4GF       TCGA-HU-A4GH 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-HU-A4GN       TCGA-HU-A4GP       TCGA-HU-A4GT       TCGA-HU-A4GU 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H0       TCGA-HU-A4H2 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-HU-A4H8       TCGA-HU-A4HD       TCGA-IN-7806       TCGA-IN-7808 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
      TCGA-IN-8462       TCGA-IN-8663       TCGA-IP-7968 
"KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" "KDELR3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KDELR3 MUTATED        2      0      1
  KDELR3 WILD-TYPE    121     95     70
D293V7, multiclass
        clus
vv       KDELR3 MUTATED KDELR3 WILD-TYPE
  CLUS_1              2              121
  CLUS_2              0               95
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KDELR3 MUTATED        2      0      1
  KDELR3 WILD-TYPE    155     63     68
D293V8, multiclass
        clus
vv       KDELR3 MUTATED KDELR3 WILD-TYPE
  CLUS_1              2              155
  CLUS_2              0               63
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KDELR3 MUTATED        1      0      2      0      0      0
  KDELR3 WILD-TYPE     32     19     57     39     16     45
D293V9, multiclass
        clus
vv       KDELR3 MUTATED KDELR3 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               19
  CLUS_3              2               57
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KDELR3 MUTATED        0      0      2      0      0      1
  KDELR3 WILD-TYPE     47     39     33     32     23     34
D293V10, multiclass
        clus
vv       KDELR3 MUTATED KDELR3 WILD-TYPE
  CLUS_1              0               47
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(294) Variable = ZNF43 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF43 MUTATED        2     14      3      3      1
  ZNF43 WILD-TYPE     77    112     24     40     11
D294V1, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             2              77
  CLUS_2            14             112
  CLUS_3             3              24
  CLUS_4             3              40
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF43 MUTATED        2     10      4      2
  ZNF43 WILD-TYPE     69     66     30     61
D294V2, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             2              69
  CLUS_2            10              66
  CLUS_3             4              30
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF43 MUTATED        2      4      4      5      6
  ZNF43 WILD-TYPE     14     58     47     60     49
D294V3, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             4              58
  CLUS_3             4              47
  CLUS_4             5              60
  CLUS_5             6              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF43 MUTATED        7      8      3      3
  ZNF43 WILD-TYPE     91     36     47     54
D294V4, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             7              91
  CLUS_2             8              36
  CLUS_3             3              47
  CLUS_4             3              54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF43 MUTATED        9      1      0      9      2
  ZNF43 WILD-TYPE     53     58     40     28     57
D294V5, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             9              53
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             9              28
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF43 MUTATED        5      3     13
  ZNF43 WILD-TYPE    101     51     84
D294V6, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             5             101
  CLUS_2             3              51
  CLUS_3            13              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF43 MUTATED       18      4      1
  ZNF43 WILD-TYPE    105     91     70
D294V7, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1            18             105
  CLUS_2             4              91
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF43 MUTATED       20      2      1
  ZNF43 WILD-TYPE    137     61     68
D294V8, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1            20             137
  CLUS_2             2              61
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF43 MUTATED        1      4      8      1      1      0
  ZNF43 WILD-TYPE     32     15     51     38     15     45
D294V9, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             4              15
  CLUS_3             8              51
  CLUS_4             1              38
  CLUS_5             1              15
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF43 MUTATED        4      1      6      3      0      1
  ZNF43 WILD-TYPE     43     38     29     29     23     34
D294V10, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             1              38
  CLUS_3             6              29
  CLUS_4             3              29
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(295) Variable = CTSA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSA MUTATED        0      2      0      0      1
  CTSA WILD-TYPE     79    124     27     43     11
D295V1, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            0             79
  CLUS_2            2            124
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSA MUTATED        0      1      0      2
  CTSA WILD-TYPE     71     75     34     61
D295V2, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            0             71
  CLUS_2            1             75
  CLUS_3            0             34
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSA MUTATED        0      1      0      1      1
  CTSA WILD-TYPE     16     61     51     64     54
D295V3, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            0             16
  CLUS_2            1             61
  CLUS_3            0             51
  CLUS_4            1             64
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSA MUTATED        1      0      1      1
  CTSA WILD-TYPE     97     44     49     56
D295V4, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            1             97
  CLUS_2            0             44
  CLUS_3            1             49
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSA MUTATED        3      1      0      0      0
  CTSA WILD-TYPE     59     58     40     37     59
D295V5, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            3             59
  CLUS_2            1             58
  CLUS_3            0             40
  CLUS_4            0             37
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSA MUTATED        1      1      2
  CTSA WILD-TYPE    105     53     95
D295V6, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            1            105
  CLUS_2            1             53
  CLUS_3            2             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSA MUTATED        3      1      0
  CTSA WILD-TYPE    120     94     71
D295V7, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            3            120
  CLUS_2            1             94
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSA MUTATED        2      2      0
  CTSA WILD-TYPE    155     61     69
D295V8, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            2            155
  CLUS_2            2             61
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTSA MUTATED        1      0      1      0      0      1
  CTSA WILD-TYPE     32     19     58     39     16     44
D295V9, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             19
  CLUS_3            1             58
  CLUS_4            0             39
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTSA MUTATED        1      1      1      0      0      0
  CTSA WILD-TYPE     46     38     34     32     23     35
D295V10, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            1             46
  CLUS_2            1             38
  CLUS_3            1             34
  CLUS_4            0             32
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(296) Variable = HIVEP1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIVEP1 MUTATED        2     16      3      1      0
  HIVEP1 WILD-TYPE     77    110     24     42     12
D296V1, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              2               77
  CLUS_2             16              110
  CLUS_3              3               24
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP1 MUTATED        1     13      3      3
  HIVEP1 WILD-TYPE     70     63     31     60
D296V2, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              1               70
  CLUS_2             13               63
  CLUS_3              3               31
  CLUS_4              3               60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIVEP1 MUTATED        2      8      2      2      5
  HIVEP1 WILD-TYPE     14     54     49     63     50
D296V3, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              2               14
  CLUS_2              8               54
  CLUS_3              2               49
  CLUS_4              2               63
  CLUS_5              5               50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP1 MUTATED        4      6      7      2
  HIVEP1 WILD-TYPE     94     38     43     55
D296V4, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              4               94
  CLUS_2              6               38
  CLUS_3              7               43
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIVEP1 MUTATED       11      1      3      4      1
  HIVEP1 WILD-TYPE     51     58     37     33     58
D296V5, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1             11               51
  CLUS_2              1               58
  CLUS_3              3               37
  CLUS_4              4               33
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HIVEP1 MUTATED        3      1     16
  HIVEP1 WILD-TYPE    103     53     81
D296V6, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              1               53
  CLUS_3             16               81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HIVEP1 MUTATED       16      4      2
  HIVEP1 WILD-TYPE    107     91     69
D296V7, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1             16              107
  CLUS_2              4               91
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HIVEP1 MUTATED       21      1      0
  HIVEP1 WILD-TYPE    136     62     69
D296V8, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1             21              136
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HIVEP1 MUTATED        3      3      6      4      0      1
  HIVEP1 WILD-TYPE     30     16     53     35     16     44
D296V9, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              3               16
  CLUS_3              6               53
  CLUS_4              4               35
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HIVEP1 MUTATED        6      0      5      1      5      0
  HIVEP1 WILD-TYPE     41     39     30     31     18     35
D296V10, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              6               41
  CLUS_2              0               39
  CLUS_3              5               30
  CLUS_4              1               31
  CLUS_5              5               18
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(297) Variable = OR7C1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR7C1 MUTATED        0      5      0      0      0
  OR7C1 WILD-TYPE     79    121     27     43     12
D297V1, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             5             121
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR7C1 MUTATED        0      4      1      0
  OR7C1 WILD-TYPE     71     72     33     63
D297V2, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             4              72
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR7C1 MUTATED        0      2      1      0      0
  OR7C1 WILD-TYPE     16     60     50     65     55
D297V3, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             0              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR7C1 MUTATED        0      2      1      0
  OR7C1 WILD-TYPE     98     42     49     57
D297V4, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             2              42
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR7C1 MUTATED        4      0      0      1      0
  OR7C1 WILD-TYPE     58     59     40     36     59
D297V5, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR7C1 MUTATED        0      0      5
  OR7C1 WILD-TYPE    106     54     92
D297V6, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              54
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR7C1 MUTATED        5      1      0
  OR7C1 WILD-TYPE    118     94     71
D297V7, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             5             118
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR7C1 MUTATED        5      1      0
  OR7C1 WILD-TYPE    152     62     69
D297V8, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             5             152
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR7C1 MUTATED        1      1      1      2      0      0
  OR7C1 WILD-TYPE     32     18     58     37     16     45
D297V9, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             1              58
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR7C1 MUTATED        2      0      1      0      2      0
  OR7C1 WILD-TYPE     45     39     34     32     21     35
D297V10, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(298) Variable = MLL3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL3 MUTATED        4     25      3      4      6
  MLL3 WILD-TYPE     75    101     24     39      6
D298V1, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            4             75
  CLUS_2           25            101
  CLUS_3            3             24
  CLUS_4            4             39
  CLUS_5            6              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED        3     19      6      2
  MLL3 WILD-TYPE     68     57     28     61
D298V2, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            3             68
  CLUS_2           19             57
  CLUS_3            6             28
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL3 MUTATED        4     13     10      2      9
  MLL3 WILD-TYPE     12     49     41     63     46
D298V3, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            4             12
  CLUS_2           13             49
  CLUS_3           10             41
  CLUS_4            2             63
  CLUS_5            9             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED       14     15      6      3
  MLL3 WILD-TYPE     84     29     44     54
D298V4, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           14             84
  CLUS_2           15             29
  CLUS_3            6             44
  CLUS_4            3             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL3 MUTATED       17      5      8      6      3
  MLL3 WILD-TYPE     45     54     32     31     56
D298V5, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           17             45
  CLUS_2            5             54
  CLUS_3            8             32
  CLUS_4            6             31
  CLUS_5            3             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL3 MUTATED       10      3     26
  MLL3 WILD-TYPE     96     51     71
D298V6, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           10             96
  CLUS_2            3             51
  CLUS_3           26             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL3 MUTATED       30      6      6
  MLL3 WILD-TYPE     93     89     65
D298V7, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           30             93
  CLUS_2            6             89
  CLUS_3            6             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL3 MUTATED       35      4      3
  MLL3 WILD-TYPE    122     59     66
D298V8, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           35            122
  CLUS_2            4             59
  CLUS_3            3             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLL3 MUTATED        5      3      6      8      0      2
  MLL3 WILD-TYPE     28     16     53     31     16     43
D298V9, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            5             28
  CLUS_2            3             16
  CLUS_3            6             53
  CLUS_4            8             31
  CLUS_5            0             16
  CLUS_6            2             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLL3 MUTATED        9      1      5      2      6      1
  MLL3 WILD-TYPE     38     38     30     30     17     34
D298V10, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            9             38
  CLUS_2            1             38
  CLUS_3            5             30
  CLUS_4            2             30
  CLUS_5            6             17
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(299) Variable = KBTBD6 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KBTBD6 MUTATED        0     10      3      0      0
  KBTBD6 WILD-TYPE     79    116     24     43     12
D299V1, multiclass
        clus
vv       KBTBD6 MUTATED KBTBD6 WILD-TYPE
  CLUS_1              0               79
  CLUS_2             10              116
  CLUS_3              3               24
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KBTBD6 MUTATED        0      3      1      3
  KBTBD6 WILD-TYPE     71     73     33     60
D299V2, multiclass
        clus
vv       KBTBD6 MUTATED KBTBD6 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              3               73
  CLUS_3              1               33
  CLUS_4              3               60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KBTBD6 MUTATED        0      3      0      1      7
  KBTBD6 WILD-TYPE     16     59     51     64     48
D299V3, multiclass
        clus
vv       KBTBD6 MUTATED KBTBD6 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              3               59
  CLUS_3              0               51
  CLUS_4              1               64
  CLUS_5              7               48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KBTBD6 MUTATED        2      6      1      2
  KBTBD6 WILD-TYPE     96     38     49     55
D299V4, multiclass
        clus
vv       KBTBD6 MUTATED KBTBD6 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              6               38
  CLUS_3              1               49
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KBTBD6 MUTATED        6      2      0      2      1
  KBTBD6 WILD-TYPE     56     57     40     35     58
D299V5, multiclass
        clus
vv       KBTBD6 MUTATED KBTBD6 WILD-TYPE
  CLUS_1              6               56
  CLUS_2              2               57
  CLUS_3              0               40
  CLUS_4              2               35
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KBTBD6 MUTATED        2      2      7
  KBTBD6 WILD-TYPE    104     52     90
D299V6, multiclass
        clus
vv       KBTBD6 MUTATED KBTBD6 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              2               52
  CLUS_3              7               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KBTBD6 MUTATED       10      2      1
  KBTBD6 WILD-TYPE    113     93     70
D299V7, multiclass
        clus
vv       KBTBD6 MUTATED KBTBD6 WILD-TYPE
  CLUS_1             10              113
  CLUS_2              2               93
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KBTBD6 MUTATED        9      3      1
  KBTBD6 WILD-TYPE    148     60     68
D299V8, multiclass
        clus
vv       KBTBD6 MUTATED KBTBD6 WILD-TYPE
  CLUS_1              9              148
  CLUS_2              3               60
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KBTBD6 MUTATED        1      2      1      1      0      1
  KBTBD6 WILD-TYPE     32     17     58     38     16     44
D299V9, multiclass
        clus
vv       KBTBD6 MUTATED KBTBD6 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               17
  CLUS_3              1               58
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KBTBD6 MUTATED        3      1      1      1      0      0
  KBTBD6 WILD-TYPE     44     38     34     31     23     35
D299V10, multiclass
        clus
vv       KBTBD6 MUTATED KBTBD6 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              1               38
  CLUS_3              1               34
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(300) Variable = EBF3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EBF3 MUTATED        1      9      1      1      0
  EBF3 WILD-TYPE     78    117     26     42     12
D300V1, multiclass
        clus
vv       EBF3 MUTATED EBF3 WILD-TYPE
  CLUS_1            1             78
  CLUS_2            9            117
  CLUS_3            1             26
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EBF3 MUTATED        0      9      2      1
  EBF3 WILD-TYPE     71     67     32     62
D300V2, multiclass
        clus
vv       EBF3 MUTATED EBF3 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            9             67
  CLUS_3            2             32
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EBF3 MUTATED        1      2      4      0      3
  EBF3 WILD-TYPE     15     60     47     65     52
D300V3, multiclass
        clus
vv       EBF3 MUTATED EBF3 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            2             60
  CLUS_3            4             47
  CLUS_4            0             65
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EBF3 MUTATED        2      7      1      0
  EBF3 WILD-TYPE     96     37     49     57
D300V4, multiclass
        clus
vv       EBF3 MUTATED EBF3 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            7             37
  CLUS_3            1             49
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EBF3 MUTATED        7      1      0      2      0
  EBF3 WILD-TYPE     55     58     40     35     59
D300V5, multiclass
        clus
vv       EBF3 MUTATED EBF3 WILD-TYPE
  CLUS_1            7             55
  CLUS_2            1             58
  CLUS_3            0             40
  CLUS_4            2             35
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EBF3 MUTATED        1      1      8
  EBF3 WILD-TYPE    105     53     89
D300V6, multiclass
        clus
vv       EBF3 MUTATED EBF3 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            1             53
  CLUS_3            8             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EBF3 MUTATED        9      3      0
  EBF3 WILD-TYPE    114     92     71
D300V7, multiclass
        clus
vv       EBF3 MUTATED EBF3 WILD-TYPE
  CLUS_1            9            114
  CLUS_2            3             92
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EBF3 MUTATED       10      2      0
  EBF3 WILD-TYPE    147     61     69
D300V8, multiclass
        clus
vv       EBF3 MUTATED EBF3 WILD-TYPE
  CLUS_1           10            147
  CLUS_2            2             61
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EBF3 MUTATED        3      0      3      3      0      1
  EBF3 WILD-TYPE     30     19     56     36     16     44
D300V9, multiclass
        clus
vv       EBF3 MUTATED EBF3 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            0             19
  CLUS_3            3             56
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EBF3 MUTATED        3      1      2      3      1      0
  EBF3 WILD-TYPE     44     38     33     29     22     35
D300V10, multiclass
        clus
vv       EBF3 MUTATED EBF3 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            1             38
  CLUS_3            2             33
  CLUS_4            3             29
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(301) Variable = ELF3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELF3 MUTATED        0      9      1      0      0
  ELF3 WILD-TYPE     79    117     26     43     12
D301V1, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            9            117
  CLUS_3            1             26
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF3 MUTATED        0      4      2      2
  ELF3 WILD-TYPE     71     72     32     61
D301V2, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            4             72
  CLUS_3            2             32
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELF3 MUTATED        1      7      1      1      1
  ELF3 WILD-TYPE     15     55     50     64     54
D301V3, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            7             55
  CLUS_3            1             50
  CLUS_4            1             64
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF3 MUTATED        1      5      5      0
  ELF3 WILD-TYPE     97     39     45     57
D301V4, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            1             97
  CLUS_2            5             39
  CLUS_3            5             45
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELF3 MUTATED        5      1      0      4      0
  ELF3 WILD-TYPE     57     58     40     33     59
D301V5, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            5             57
  CLUS_2            1             58
  CLUS_3            0             40
  CLUS_4            4             33
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF3 MUTATED        3      1      6
  ELF3 WILD-TYPE    103     53     91
D301V6, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            3            103
  CLUS_2            1             53
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF3 MUTATED       11      0      0
  ELF3 WILD-TYPE    112     95     71
D301V7, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1           11            112
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF3 MUTATED       11      0      0
  ELF3 WILD-TYPE    146     63     69
D301V8, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1           11            146
  CLUS_2            0             63
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ELF3 MUTATED        1      0      7      0      0      0
  ELF3 WILD-TYPE     32     19     52     39     16     45
D301V9, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             19
  CLUS_3            7             52
  CLUS_4            0             39
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ELF3 MUTATED        2      0      5      1      0      0
  ELF3 WILD-TYPE     45     39     30     31     23     35
D301V10, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            5             30
  CLUS_4            1             31
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(302) Variable = RRS1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RRS1 MUTATED        1      5      1      0      0
  RRS1 WILD-TYPE     78    121     26     43     12
D302V1, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            1             78
  CLUS_2            5            121
  CLUS_3            1             26
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRS1 MUTATED        2      3      0      0
  RRS1 WILD-TYPE     69     73     34     63
D302V2, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            3             73
  CLUS_3            0             34
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RRS1 MUTATED        1      2      1      0      1
  RRS1 WILD-TYPE     15     60     50     65     54
D302V3, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            2             60
  CLUS_3            1             50
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRS1 MUTATED        2      2      1      0
  RRS1 WILD-TYPE     96     42     49     57
D302V4, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            2             42
  CLUS_3            1             49
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RRS1 MUTATED        3      0      0      3      1
  RRS1 WILD-TYPE     59     59     40     34     58
D302V5, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            3             59
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            3             34
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RRS1 MUTATED        1      1      5
  RRS1 WILD-TYPE    105     53     92
D302V6, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            1             53
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RRS1 MUTATED        4      2      1
  RRS1 WILD-TYPE    119     93     70
D302V7, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            4            119
  CLUS_2            2             93
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RRS1 MUTATED        7      0      0
  RRS1 WILD-TYPE    150     63     69
D302V8, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            7            150
  CLUS_2            0             63
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RRS1 MUTATED        1      0      1      3      0      0
  RRS1 WILD-TYPE     32     19     58     36     16     45
D302V9, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             19
  CLUS_3            1             58
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RRS1 MUTATED        3      0      0      1      1      0
  RRS1 WILD-TYPE     44     39     35     31     22     35
D302V10, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            0             39
  CLUS_3            0             35
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(303) Variable = MYEOV MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYEOV MUTATED        0      6      1      0      1
  MYEOV WILD-TYPE     79    120     26     43     11
D303V1, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYEOV MUTATED        0      6      1      0
  MYEOV WILD-TYPE     71     70     33     63
D303V2, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             0              71
  CLUS_2             6              70
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYEOV MUTATED        0      2      2      0      2
  MYEOV WILD-TYPE     16     60     49     65     53
D303V3, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYEOV MUTATED        0      5      1      0
  MYEOV WILD-TYPE     98     39     49     57
D303V4, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             0              98
  CLUS_2             5              39
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYEOV MUTATED        4      0      2      2      0
  MYEOV WILD-TYPE     58     59     38     35     59
D303V5, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             2              38
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYEOV MUTATED        0      0      8
  MYEOV WILD-TYPE    106     54     89
D303V6, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              54
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYEOV MUTATED        6      1      1
  MYEOV WILD-TYPE    117     94     70
D303V7, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             6             117
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYEOV MUTATED        8      0      0
  MYEOV WILD-TYPE    149     63     69
D303V8, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             8             149
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MYEOV MUTATED        1      1      1      3      0      0
  MYEOV WILD-TYPE     32     18     58     36     16     45
D303V9, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             1              58
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MYEOV MUTATED        3      0      0      1      2      0
  MYEOV WILD-TYPE     44     39     35     31     21     35
D303V10, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             0              35
  CLUS_4             1              31
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(304) Variable = SMARCB1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCB1 MUTATED        1      7      1      0      2
  SMARCB1 WILD-TYPE     78    119     26     43     10
D304V1, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               1                78
  CLUS_2               7               119
  CLUS_3               1                26
  CLUS_4               0                43
  CLUS_5               2                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        1      6      1      0
  SMARCB1 WILD-TYPE     70     70     33     63
D304V2, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               6                70
  CLUS_3               1                33
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCB1 MUTATED        0      4      4      0      1
  SMARCB1 WILD-TYPE     16     58     47     65     54
D304V3, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               4                58
  CLUS_3               4                47
  CLUS_4               0                65
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        3      3      3      0
  SMARCB1 WILD-TYPE     95     41     47     57
D304V4, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               3                95
  CLUS_2               3                41
  CLUS_3               3                47
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCB1 MUTATED        5      1      0      2      0
  SMARCB1 WILD-TYPE     57     58     40     35     59
D304V5, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               5                57
  CLUS_2               1                58
  CLUS_3               0                40
  CLUS_4               2                35
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        1      2      5
  SMARCB1 WILD-TYPE    105     52     92
D304V6, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               2                52
  CLUS_3               5                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        6      3      2
  SMARCB1 WILD-TYPE    117     92     69
D304V7, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               6               117
  CLUS_2               3                92
  CLUS_3               2                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        8      2      1
  SMARCB1 WILD-TYPE    149     61     68
D304V8, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               8               149
  CLUS_2               2                61
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMARCB1 MUTATED        1      1      1      1      0      2
  SMARCB1 WILD-TYPE     32     18     58     38     16     43
D304V9, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                18
  CLUS_3               1                58
  CLUS_4               1                38
  CLUS_5               0                16
  CLUS_6               2                43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMARCB1 MUTATED        2      2      1      0      1      0
  SMARCB1 WILD-TYPE     45     37     34     32     22     35
D304V10, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               2                45
  CLUS_2               2                37
  CLUS_3               1                34
  CLUS_4               0                32
  CLUS_5               1                22
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(305) Variable = MLXIPL MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLXIPL MUTATED        1      9      1      2      1
  MLXIPL WILD-TYPE     78    117     26     41     11
D305V1, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              1               78
  CLUS_2              9              117
  CLUS_3              1               26
  CLUS_4              2               41
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLXIPL MUTATED        1      4      2      3
  MLXIPL WILD-TYPE     70     72     32     60
D305V2, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              1               70
  CLUS_2              4               72
  CLUS_3              2               32
  CLUS_4              3               60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLXIPL MUTATED        1      2      4      2      4
  MLXIPL WILD-TYPE     15     60     47     63     51
D305V3, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              1               15
  CLUS_2              2               60
  CLUS_3              4               47
  CLUS_4              2               63
  CLUS_5              4               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLXIPL MUTATED        4      6      2      1
  MLXIPL WILD-TYPE     94     38     48     56
D305V4, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              4               94
  CLUS_2              6               38
  CLUS_3              2               48
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLXIPL MUTATED        7      2      2      1      1
  MLXIPL WILD-TYPE     55     57     38     36     58
D305V5, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              7               55
  CLUS_2              2               57
  CLUS_3              2               38
  CLUS_4              1               36
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MLXIPL MUTATED        4      1      8
  MLXIPL WILD-TYPE    102     53     89
D305V6, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              4              102
  CLUS_2              1               53
  CLUS_3              8               89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MLXIPL MUTATED       11      2      1
  MLXIPL WILD-TYPE    112     93     70
D305V7, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1             11              112
  CLUS_2              2               93
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MLXIPL MUTATED        9      3      2
  MLXIPL WILD-TYPE    148     60     67
D305V8, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              9              148
  CLUS_2              3               60
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLXIPL MUTATED        2      0      3      2      0      2
  MLXIPL WILD-TYPE     31     19     56     37     16     43
D305V9, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               19
  CLUS_3              3               56
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              2               43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLXIPL MUTATED        1      2      3      1      1      1
  MLXIPL WILD-TYPE     46     37     32     31     22     34
D305V10, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              1               46
  CLUS_2              2               37
  CLUS_3              3               32
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(306) Variable = FAM193A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM193A MUTATED        2     12      0      0      1
  FAM193A WILD-TYPE     77    114     27     43     11
D306V1, multiclass
        clus
vv       FAM193A MUTATED FAM193A WILD-TYPE
  CLUS_1               2                77
  CLUS_2              12               114
  CLUS_3               0                27
  CLUS_4               0                43
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM193A MUTATED        2      6      0      1
  FAM193A WILD-TYPE     69     70     34     62
D306V2, multiclass
        clus
vv       FAM193A MUTATED FAM193A WILD-TYPE
  CLUS_1               2                69
  CLUS_2               6                70
  CLUS_3               0                34
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM193A MUTATED        0      5      2      1      5
  FAM193A WILD-TYPE     16     57     49     64     50
D306V3, multiclass
        clus
vv       FAM193A MUTATED FAM193A WILD-TYPE
  CLUS_1               0                16
  CLUS_2               5                57
  CLUS_3               2                49
  CLUS_4               1                64
  CLUS_5               5                50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM193A MUTATED        5      5      2      1
  FAM193A WILD-TYPE     93     39     48     56
D306V4, multiclass
        clus
vv       FAM193A MUTATED FAM193A WILD-TYPE
  CLUS_1               5                93
  CLUS_2               5                39
  CLUS_3               2                48
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM193A MUTATED        4      1      4      5      1
  FAM193A WILD-TYPE     58     58     36     32     58
D306V5, multiclass
        clus
vv       FAM193A MUTATED FAM193A WILD-TYPE
  CLUS_1               4                58
  CLUS_2               1                58
  CLUS_3               4                36
  CLUS_4               5                32
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM193A MUTATED        3      1     11
  FAM193A WILD-TYPE    103     53     86
D306V6, multiclass
        clus
vv       FAM193A MUTATED FAM193A WILD-TYPE
  CLUS_1               3               103
  CLUS_2               1                53
  CLUS_3              11                86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM193A MUTATED       12      2      1
  FAM193A WILD-TYPE    111     93     70
D306V7, multiclass
        clus
vv       FAM193A MUTATED FAM193A WILD-TYPE
  CLUS_1              12               111
  CLUS_2               2                93
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM193A MUTATED       11      0      4
  FAM193A WILD-TYPE    146     63     65
D306V8, multiclass
        clus
vv       FAM193A MUTATED FAM193A WILD-TYPE
  CLUS_1              11               146
  CLUS_2               0                63
  CLUS_3               4                65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM193A MUTATED        2      1      1      2      1      0
  FAM193A WILD-TYPE     31     18     58     37     15     45
D306V9, multiclass
        clus
vv       FAM193A MUTATED FAM193A WILD-TYPE
  CLUS_1               2                31
  CLUS_2               1                18
  CLUS_3               1                58
  CLUS_4               2                37
  CLUS_5               1                15
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM193A MUTATED        2      0      0      2      1      2
  FAM193A WILD-TYPE     45     39     35     30     22     33
D306V10, multiclass
        clus
vv       FAM193A MUTATED FAM193A WILD-TYPE
  CLUS_1               2                45
  CLUS_2               0                39
  CLUS_3               0                35
  CLUS_4               2                30
  CLUS_5               1                22
  CLUS_6               2                33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(307) Variable = ZNF626 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF626 MUTATED        2      9      2      1      1
  ZNF626 WILD-TYPE     77    117     25     42     11
D307V1, multiclass
        clus
vv       ZNF626 MUTATED ZNF626 WILD-TYPE
  CLUS_1              2               77
  CLUS_2              9              117
  CLUS_3              2               25
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF626 MUTATED        3      5      4      1
  ZNF626 WILD-TYPE     68     71     30     62
D307V2, multiclass
        clus
vv       ZNF626 MUTATED ZNF626 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              5               71
  CLUS_3              4               30
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF626 MUTATED        0      5      2      2      4
  ZNF626 WILD-TYPE     16     57     49     63     51
D307V3, multiclass
        clus
vv       ZNF626 MUTATED ZNF626 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              5               57
  CLUS_3              2               49
  CLUS_4              2               63
  CLUS_5              4               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF626 MUTATED        2      4      4      3
  ZNF626 WILD-TYPE     96     40     46     54
D307V4, multiclass
        clus
vv       ZNF626 MUTATED ZNF626 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              4               40
  CLUS_3              4               46
  CLUS_4              3               54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF626 MUTATED        6      3      1      2      2
  ZNF626 WILD-TYPE     56     56     39     35     57
D307V5, multiclass
        clus
vv       ZNF626 MUTATED ZNF626 WILD-TYPE
  CLUS_1              6               56
  CLUS_2              3               56
  CLUS_3              1               39
  CLUS_4              2               35
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF626 MUTATED        5      5      4
  ZNF626 WILD-TYPE    101     49     93
D307V6, multiclass
        clus
vv       ZNF626 MUTATED ZNF626 WILD-TYPE
  CLUS_1              5              101
  CLUS_2              5               49
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF626 MUTATED        7      5      3
  ZNF626 WILD-TYPE    116     90     68
D307V7, multiclass
        clus
vv       ZNF626 MUTATED ZNF626 WILD-TYPE
  CLUS_1              7              116
  CLUS_2              5               90
  CLUS_3              3               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF626 MUTATED       10      3      2
  ZNF626 WILD-TYPE    147     60     67
D307V8, multiclass
        clus
vv       ZNF626 MUTATED ZNF626 WILD-TYPE
  CLUS_1             10              147
  CLUS_2              3               60
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF626 MUTATED        2      1      5      1      0      1
  ZNF626 WILD-TYPE     31     18     54     38     16     44
D307V9, multiclass
        clus
vv       ZNF626 MUTATED ZNF626 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               18
  CLUS_3              5               54
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF626 MUTATED        2      0      3      1      3      1
  ZNF626 WILD-TYPE     45     39     32     31     20     34
D307V10, multiclass
        clus
vv       ZNF626 MUTATED ZNF626 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              1               31
  CLUS_5              3               20
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(308) Variable = BRWD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRWD1 MUTATED        3     14      2      0      1
  BRWD1 WILD-TYPE     76    112     25     43     11
D308V1, multiclass
        clus
vv       BRWD1 MUTATED BRWD1 WILD-TYPE
  CLUS_1             3              76
  CLUS_2            14             112
  CLUS_3             2              25
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRWD1 MUTATED        4      9      2      3
  BRWD1 WILD-TYPE     67     67     32     60
D308V2, multiclass
        clus
vv       BRWD1 MUTATED BRWD1 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             9              67
  CLUS_3             2              32
  CLUS_4             3              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRWD1 MUTATED        1      3      9      3      3
  BRWD1 WILD-TYPE     15     59     42     62     52
D308V3, multiclass
        clus
vv       BRWD1 MUTATED BRWD1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3              59
  CLUS_3             9              42
  CLUS_4             3              62
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRWD1 MUTATED        6      8      3      2
  BRWD1 WILD-TYPE     92     36     47     55
D308V4, multiclass
        clus
vv       BRWD1 MUTATED BRWD1 WILD-TYPE
  CLUS_1             6              92
  CLUS_2             8              36
  CLUS_3             3              47
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRWD1 MUTATED        9      1      1      4      4
  BRWD1 WILD-TYPE     53     58     39     33     55
D308V5, multiclass
        clus
vv       BRWD1 MUTATED BRWD1 WILD-TYPE
  CLUS_1             9              53
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             4              33
  CLUS_5             4              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRWD1 MUTATED        6      2     11
  BRWD1 WILD-TYPE    100     52     86
D308V6, multiclass
        clus
vv       BRWD1 MUTATED BRWD1 WILD-TYPE
  CLUS_1             6             100
  CLUS_2             2              52
  CLUS_3            11              86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRWD1 MUTATED       15      3      3
  BRWD1 WILD-TYPE    108     92     68
D308V7, multiclass
        clus
vv       BRWD1 MUTATED BRWD1 WILD-TYPE
  CLUS_1            15             108
  CLUS_2             3              92
  CLUS_3             3              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRWD1 MUTATED       14      3      4
  BRWD1 WILD-TYPE    143     60     65
D308V8, multiclass
        clus
vv       BRWD1 MUTATED BRWD1 WILD-TYPE
  CLUS_1            14             143
  CLUS_2             3              60
  CLUS_3             4              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BRWD1 MUTATED        5      4      6      1      1      1
  BRWD1 WILD-TYPE     28     15     53     38     15     44
D308V9, multiclass
        clus
vv       BRWD1 MUTATED BRWD1 WILD-TYPE
  CLUS_1             5              28
  CLUS_2             4              15
  CLUS_3             6              53
  CLUS_4             1              38
  CLUS_5             1              15
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BRWD1 MUTATED        7      1      4      1      1      4
  BRWD1 WILD-TYPE     40     38     31     31     22     31
D308V10, multiclass
        clus
vv       BRWD1 MUTATED BRWD1 WILD-TYPE
  CLUS_1             7              40
  CLUS_2             1              38
  CLUS_3             4              31
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             4              31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(309) Variable = TAS2R42 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAS2R42 MUTATED        2      2      0      0      0
  TAS2R42 WILD-TYPE     77    124     27     43     12
D309V1, multiclass
        clus
vv       TAS2R42 MUTATED TAS2R42 WILD-TYPE
  CLUS_1               2                77
  CLUS_2               2               124
  CLUS_3               0                27
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAS2R42 MUTATED        2      0      2      0
  TAS2R42 WILD-TYPE     69     76     32     63
D309V2, multiclass
        clus
vv       TAS2R42 MUTATED TAS2R42 WILD-TYPE
  CLUS_1               2                69
  CLUS_2               0                76
  CLUS_3               2                32
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAS2R42 MUTATED        0      2      0      0      1
  TAS2R42 WILD-TYPE     16     60     51     65     54
D309V3, multiclass
        clus
vv       TAS2R42 MUTATED TAS2R42 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               2                60
  CLUS_3               0                51
  CLUS_4               0                65
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAS2R42 MUTATED        1      0      1      1
  TAS2R42 WILD-TYPE     97     44     49     56
D309V4, multiclass
        clus
vv       TAS2R42 MUTATED TAS2R42 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               0                44
  CLUS_3               1                49
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAS2R42 MUTATED        2      0      1      0      0
  TAS2R42 WILD-TYPE     60     59     39     37     59
D309V5, multiclass
        clus
vv       TAS2R42 MUTATED TAS2R42 WILD-TYPE
  CLUS_1               2                60
  CLUS_2               0                59
  CLUS_3               1                39
  CLUS_4               0                37
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TAS2R42 MUTATED        2      0      1
  TAS2R42 WILD-TYPE    104     54     96
D309V6, multiclass
        clus
vv       TAS2R42 MUTATED TAS2R42 WILD-TYPE
  CLUS_1               2               104
  CLUS_2               0                54
  CLUS_3               1                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TAS2R42 MUTATED        2      0      2
  TAS2R42 WILD-TYPE    121     95     69
D309V7, multiclass
        clus
vv       TAS2R42 MUTATED TAS2R42 WILD-TYPE
  CLUS_1               2               121
  CLUS_2               0                95
  CLUS_3               2                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TAS2R42 MUTATED        2      0      2
  TAS2R42 WILD-TYPE    155     63     67
D309V8, multiclass
        clus
vv       TAS2R42 MUTATED TAS2R42 WILD-TYPE
  CLUS_1               2               155
  CLUS_2               0                63
  CLUS_3               2                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAS2R42 MUTATED        2      0      1      0      0      0
  TAS2R42 WILD-TYPE     31     19     58     39     16     45
D309V9, multiclass
        clus
vv       TAS2R42 MUTATED TAS2R42 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                19
  CLUS_3               1                58
  CLUS_4               0                39
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAS2R42 MUTATED        1      0      0      0      1      1
  TAS2R42 WILD-TYPE     46     39     35     32     22     34
D309V10, multiclass
        clus
vv       TAS2R42 MUTATED TAS2R42 WILD-TYPE
  CLUS_1               1                46
  CLUS_2               0                39
  CLUS_3               0                35
  CLUS_4               0                32
  CLUS_5               1                22
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(310) Variable = CDK12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDK12 MUTATED        2     13      2      1      0
  CDK12 WILD-TYPE     77    113     25     42     12
D310V1, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             2              77
  CLUS_2            13             113
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK12 MUTATED        1      8      4      3
  CDK12 WILD-TYPE     70     68     30     60
D310V2, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             8              68
  CLUS_3             4              30
  CLUS_4             3              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDK12 MUTATED        1     12      1      0      3
  CDK12 WILD-TYPE     15     50     50     65     52
D310V3, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             1              15
  CLUS_2            12              50
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDK12 MUTATED        4      5      8      0
  CDK12 WILD-TYPE     94     39     42     57
D310V4, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             4              94
  CLUS_2             5              39
  CLUS_3             8              42
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDK12 MUTATED       11      1      0      1      2
  CDK12 WILD-TYPE     51     58     40     36     57
D310V5, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1            11              51
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED        8      1      6
  CDK12 WILD-TYPE     98     53     91
D310V6, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             8              98
  CLUS_2             1              53
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED       14      3      2
  CDK12 WILD-TYPE    109     92     69
D310V7, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1            14             109
  CLUS_2             3              92
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDK12 MUTATED       14      3      2
  CDK12 WILD-TYPE    143     60     67
D310V8, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1            14             143
  CLUS_2             3              60
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDK12 MUTATED        4      1      8      1      0      0
  CDK12 WILD-TYPE     29     18     51     38     16     45
D310V9, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             4              29
  CLUS_2             1              18
  CLUS_3             8              51
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDK12 MUTATED        3      0      7      2      1      1
  CDK12 WILD-TYPE     44     39     28     30     22     34
D310V10, multiclass
        clus
vv       CDK12 MUTATED CDK12 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             7              28
  CLUS_4             2              30
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(311) Variable = CPB2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPB2 MUTATED        0      8      0      0      0
  CPB2 WILD-TYPE     79    118     27     43     12
D311V1, multiclass
        clus
vv       CPB2 MUTATED CPB2 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            8            118
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPB2 MUTATED        0      6      0      1
  CPB2 WILD-TYPE     71     70     34     62
D311V2, multiclass
        clus
vv       CPB2 MUTATED CPB2 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            6             70
  CLUS_3            0             34
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPB2 MUTATED        0      5      1      1      1
  CPB2 WILD-TYPE     16     57     50     64     54
D311V3, multiclass
        clus
vv       CPB2 MUTATED CPB2 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            5             57
  CLUS_3            1             50
  CLUS_4            1             64
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPB2 MUTATED        0      4      4      0
  CPB2 WILD-TYPE     98     40     46     57
D311V4, multiclass
        clus
vv       CPB2 MUTATED CPB2 WILD-TYPE
  CLUS_1            0             98
  CLUS_2            4             40
  CLUS_3            4             46
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPB2 MUTATED        5      2      0      0      0
  CPB2 WILD-TYPE     57     57     40     37     59
D311V5, multiclass
        clus
vv       CPB2 MUTATED CPB2 WILD-TYPE
  CLUS_1            5             57
  CLUS_2            2             57
  CLUS_3            0             40
  CLUS_4            0             37
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CPB2 MUTATED        1      1      5
  CPB2 WILD-TYPE    105     53     92
D311V6, multiclass
        clus
vv       CPB2 MUTATED CPB2 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            1             53
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CPB2 MUTATED        6      2      1
  CPB2 WILD-TYPE    117     93     70
D311V7, multiclass
        clus
vv       CPB2 MUTATED CPB2 WILD-TYPE
  CLUS_1            6            117
  CLUS_2            2             93
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CPB2 MUTATED        8      1      0
  CPB2 WILD-TYPE    149     62     69
D311V8, multiclass
        clus
vv       CPB2 MUTATED CPB2 WILD-TYPE
  CLUS_1            8            149
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CPB2 MUTATED        1      1      3      2      0      0
  CPB2 WILD-TYPE     32     18     56     37     16     45
D311V9, multiclass
        clus
vv       CPB2 MUTATED CPB2 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            3             56
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CPB2 MUTATED        2      0      3      1      1      0
  CPB2 WILD-TYPE     45     39     32     31     22     35
D311V10, multiclass
        clus
vv       CPB2 MUTATED CPB2 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            3             32
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(312) Variable = RCOR3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RCOR3 MUTATED        0      9      2      0      0
  RCOR3 WILD-TYPE     79    117     25     43     12
D312V1, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             9             117
  CLUS_3             2              25
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCOR3 MUTATED        0      8      2      0
  RCOR3 WILD-TYPE     71     68     32     63
D312V2, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             8              68
  CLUS_3             2              32
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RCOR3 MUTATED        1      3      2      0      5
  RCOR3 WILD-TYPE     15     59     49     65     50
D312V3, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3              59
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCOR3 MUTATED        1      7      2      1
  RCOR3 WILD-TYPE     97     37     48     56
D312V4, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             7              37
  CLUS_3             2              48
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RCOR3 MUTATED        7      0      1      0      0
  RCOR3 WILD-TYPE     55     59     39     37     59
D312V5, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             7              55
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RCOR3 MUTATED        1      0      7
  RCOR3 WILD-TYPE    105     54     90
D312V6, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             7              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RCOR3 MUTATED        8      3      1
  RCOR3 WILD-TYPE    115     92     70
D312V7, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             3              92
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RCOR3 MUTATED       10      2      0
  RCOR3 WILD-TYPE    147     61     69
D312V8, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1            10             147
  CLUS_2             2              61
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RCOR3 MUTATED        3      0      4      2      0      1
  RCOR3 WILD-TYPE     30     19     55     37     16     44
D312V9, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              19
  CLUS_3             4              55
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RCOR3 MUTATED        3      1      3      1      2      0
  RCOR3 WILD-TYPE     44     38     32     31     21     35
D312V10, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             1              31
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(313) Variable = TAF1L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF1L MUTATED        3     14      3      1      1
  TAF1L WILD-TYPE     76    112     24     42     11
D313V1, multiclass
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  CLUS_1             3              76
  CLUS_2            14             112
  CLUS_3             3              24
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF1L MUTATED        2      9      3      3
  TAF1L WILD-TYPE     69     67     31     60
D313V2, multiclass
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  CLUS_1             2              69
  CLUS_2             9              67
  CLUS_3             3              31
  CLUS_4             3              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF1L MUTATED        0      6      6      2      5
  TAF1L WILD-TYPE     16     56     45     63     50
D313V3, multiclass
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  CLUS_1             0              16
  CLUS_2             6              56
  CLUS_3             6              45
  CLUS_4             2              63
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF1L MUTATED        4      6      7      2
  TAF1L WILD-TYPE     94     38     43     55
D313V4, multiclass
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  CLUS_1             4              94
  CLUS_2             6              38
  CLUS_3             7              43
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF1L MUTATED       12      3      1      1      3
  TAF1L WILD-TYPE     50     56     39     36     56
D313V5, multiclass
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  CLUS_1            12              50
  CLUS_2             3              56
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             3              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF1L MUTATED        6      3     11
  TAF1L WILD-TYPE    100     51     86
D313V6, multiclass
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  CLUS_1             6             100
  CLUS_2             3              51
  CLUS_3            11              86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF1L MUTATED       13      7      2
  TAF1L WILD-TYPE    110     88     69
D313V7, multiclass
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  CLUS_1            13             110
  CLUS_2             7              88
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF1L MUTATED       17      2      3
  TAF1L WILD-TYPE    140     61     66
D313V8, multiclass
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  CLUS_1            17             140
  CLUS_2             2              61
  CLUS_3             3              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAF1L MUTATED        4      1      5      2      0      4
  TAF1L WILD-TYPE     29     18     54     37     16     41
D313V9, multiclass
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  CLUS_1             4              29
  CLUS_2             1              18
  CLUS_3             5              54
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             4              41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAF1L MUTATED        4      3      3      3      2      1
  TAF1L WILD-TYPE     43     36     32     29     21     34
D313V10, multiclass
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  CLUS_1             4              43
  CLUS_2             3              36
  CLUS_3             3              32
  CLUS_4             3              29
  CLUS_5             2              21
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(314) Variable = GPR124 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR124 MUTATED        1     10      1      1      0
  GPR124 WILD-TYPE     78    116     26     42     12
D314V1, multiclass
        clus
vv       GPR124 MUTATED GPR124 WILD-TYPE
  CLUS_1              1               78
  CLUS_2             10              116
  CLUS_3              1               26
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR124 MUTATED        0      7      1      2
  GPR124 WILD-TYPE     71     69     33     61
D314V2, multiclass
        clus
vv       GPR124 MUTATED GPR124 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              7               69
  CLUS_3              1               33
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR124 MUTATED        1      6      2      1      3
  GPR124 WILD-TYPE     15     56     49     64     52
D314V3, multiclass
        clus
vv       GPR124 MUTATED GPR124 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              6               56
  CLUS_3              2               49
  CLUS_4              1               64
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR124 MUTATED        3      6      4      0
  GPR124 WILD-TYPE     95     38     46     57
D314V4, multiclass
        clus
vv       GPR124 MUTATED GPR124 WILD-TYPE
  CLUS_1              3               95
  CLUS_2              6               38
  CLUS_3              4               46
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR124 MUTATED        4      0      1      6      1
  GPR124 WILD-TYPE     58     59     39     31     58
D314V5, multiclass
        clus
vv       GPR124 MUTATED GPR124 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              6               31
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR124 MUTATED        4      0      8
  GPR124 WILD-TYPE    102     54     89
D314V6, multiclass
        clus
vv       GPR124 MUTATED GPR124 WILD-TYPE
  CLUS_1              4              102
  CLUS_2              0               54
  CLUS_3              8               89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR124 MUTATED       12      0      1
  GPR124 WILD-TYPE    111     95     70
D314V7, multiclass
        clus
vv       GPR124 MUTATED GPR124 WILD-TYPE
  CLUS_1             12              111
  CLUS_2              0               95
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR124 MUTATED       12      1      0
  GPR124 WILD-TYPE    145     62     69
D314V8, multiclass
        clus
vv       GPR124 MUTATED GPR124 WILD-TYPE
  CLUS_1             12              145
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR124 MUTATED        0      2      5      2      0      0
  GPR124 WILD-TYPE     33     17     54     37     16     45
D314V9, multiclass
        clus
vv       GPR124 MUTATED GPR124 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              2               17
  CLUS_3              5               54
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR124 MUTATED        4      0      3      0      2      0
  GPR124 WILD-TYPE     43     39     32     32     21     35
D314V10, multiclass
        clus
vv       GPR124 MUTATED GPR124 WILD-TYPE
  CLUS_1              4               43
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              0               32
  CLUS_5              2               21
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(315) Variable = COL12A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL12A1 MUTATED        8     28      4      4      1
  COL12A1 WILD-TYPE     71     98     23     39     11
D315V1, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1               8                71
  CLUS_2              28                98
  CLUS_3               4                23
  CLUS_4               4                39
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL12A1 MUTATED        6     22      3      6
  COL12A1 WILD-TYPE     65     54     31     57
D315V2, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1               6                65
  CLUS_2              22                54
  CLUS_3               3                31
  CLUS_4               6                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL12A1 MUTATED        3     13      7      5     13
  COL12A1 WILD-TYPE     13     49     44     60     42
D315V3, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1               3                13
  CLUS_2              13                49
  CLUS_3               7                44
  CLUS_4               5                60
  CLUS_5              13                42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL12A1 MUTATED       14     13      9      5
  COL12A1 WILD-TYPE     84     31     41     52
D315V4, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1              14                84
  CLUS_2              13                31
  CLUS_3               9                41
  CLUS_4               5                52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL12A1 MUTATED       13      5      8      9      6
  COL12A1 WILD-TYPE     49     54     32     28     53
D315V5, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1              13                49
  CLUS_2               5                54
  CLUS_3               8                32
  CLUS_4               9                28
  CLUS_5               6                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL12A1 MUTATED       14      3     24
  COL12A1 WILD-TYPE     92     51     73
D315V6, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1              14                92
  CLUS_2               3                51
  CLUS_3              24                73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL12A1 MUTATED       34      9      3
  COL12A1 WILD-TYPE     89     86     68
D315V7, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1              34                89
  CLUS_2               9                86
  CLUS_3               3                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL12A1 MUTATED       32      4     10
  COL12A1 WILD-TYPE    125     59     59
D315V8, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1              32               125
  CLUS_2               4                59
  CLUS_3              10                59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  COL12A1 MUTATED        6      7     13      5      3      3
  COL12A1 WILD-TYPE     27     12     46     34     13     42
D315V9, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1               6                27
  CLUS_2               7                12
  CLUS_3              13                46
  CLUS_4               5                34
  CLUS_5               3                13
  CLUS_6               3                42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  COL12A1 MUTATED       15      3      9      3      1      6
  COL12A1 WILD-TYPE     32     36     26     29     22     29
D315V10, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1              15                32
  CLUS_2               3                36
  CLUS_3               9                26
  CLUS_4               3                29
  CLUS_5               1                22
  CLUS_6               6                29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(316) Variable = OR2J3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2J3 MUTATED        1      5      0      0      0
  OR2J3 WILD-TYPE     78    121     27     43     12
D316V1, multiclass
        clus
vv       OR2J3 MUTATED OR2J3 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             5             121
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2J3 MUTATED        0      5      0      0
  OR2J3 WILD-TYPE     71     71     34     63
D316V2, multiclass
        clus
vv       OR2J3 MUTATED OR2J3 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             5              71
  CLUS_3             0              34
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2J3 MUTATED        0      2      2      2      0
  OR2J3 WILD-TYPE     16     60     49     63     55
D316V3, multiclass
        clus
vv       OR2J3 MUTATED OR2J3 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             2              49
  CLUS_4             2              63
  CLUS_5             0              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2J3 MUTATED        0      3      1      2
  OR2J3 WILD-TYPE     98     41     49     55
D316V4, multiclass
        clus
vv       OR2J3 MUTATED OR2J3 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             3              41
  CLUS_3             1              49
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2J3 MUTATED        2      1      0      2      1
  OR2J3 WILD-TYPE     60     58     40     35     58
D316V5, multiclass
        clus
vv       OR2J3 MUTATED OR2J3 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             2              35
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2J3 MUTATED        1      2      3
  OR2J3 WILD-TYPE    105     52     94
D316V6, multiclass
        clus
vv       OR2J3 MUTATED OR2J3 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             2              52
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2J3 MUTATED        2      2      2
  OR2J3 WILD-TYPE    121     93     69
D316V7, multiclass
        clus
vv       OR2J3 MUTATED OR2J3 WILD-TYPE
  CLUS_1             2             121
  CLUS_2             2              93
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2J3 MUTATED        4      1      1
  OR2J3 WILD-TYPE    153     62     68
D316V8, multiclass
        clus
vv       OR2J3 MUTATED OR2J3 WILD-TYPE
  CLUS_1             4             153
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR2J3 MUTATED        1      1      2      1      0      0
  OR2J3 WILD-TYPE     32     18     57     38     16     45
D316V9, multiclass
        clus
vv       OR2J3 MUTATED OR2J3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             2              57
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR2J3 MUTATED        2      0      1      1      0      1
  OR2J3 WILD-TYPE     45     39     34     31     23     34
D316V10, multiclass
        clus
vv       OR2J3 MUTATED OR2J3 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(317) Variable = ENTPD2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ENTPD2 MUTATED        0      3      0      0      1
  ENTPD2 WILD-TYPE     79    123     27     43     11
D317V1, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              3              123
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENTPD2 MUTATED        0      2      1      0
  ENTPD2 WILD-TYPE     71     74     33     63
D317V2, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              2               74
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ENTPD2 MUTATED        0      1      1      0      1
  ENTPD2 WILD-TYPE     16     61     50     65     54
D317V3, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              1               61
  CLUS_3              1               50
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENTPD2 MUTATED        0      2      0      1
  ENTPD2 WILD-TYPE     98     42     50     56
D317V4, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              2               42
  CLUS_3              0               50
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ENTPD2 MUTATED        2      1      1      0      0
  ENTPD2 WILD-TYPE     60     58     39     37     59
D317V5, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              0               37
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENTPD2 MUTATED        1      1      2
  ENTPD2 WILD-TYPE    105     53     95
D317V6, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              1               53
  CLUS_3              2               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENTPD2 MUTATED        3      0      1
  ENTPD2 WILD-TYPE    120     95     70
D317V7, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              3              120
  CLUS_2              0               95
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENTPD2 MUTATED        3      0      1
  ENTPD2 WILD-TYPE    154     63     68
D317V8, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              3              154
  CLUS_2              0               63
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ENTPD2 MUTATED        0      1      1      0      0      0
  ENTPD2 WILD-TYPE     33     18     58     39     16     45
D317V9, multiclass
[1] "Remove cluster labels:" "ENTPD2 MUTATED"        
clus
  ENTPD2 MUTATED ENTPD2 WILD-TYPE 
               2              209 
      TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6453       TCGA-BR-6454 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457       TCGA-BR-6458 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6710 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-7715       TCGA-BR-7717       TCGA-BR-7723       TCGA-BR-7851 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8077       TCGA-BR-8078 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-8080       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8297 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-8360       TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8370 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373       TCGA-BR-8380 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8487       TCGA-BR-8588 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-A44T       TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J6 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8534       TCGA-CD-8535 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-4449       TCGA-CG-5717 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5726 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8574       TCGA-D7-8575 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-D7-8576       TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YY       TCGA-D7-A4Z0       TCGA-EQ-5647 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-EQ-8122       TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-F1-A448       TCGA-FP-7735       TCGA-FP-7829       TCGA-FP-7998 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-FP-8099       TCGA-FP-8209       TCGA-FP-8210       TCGA-FP-8211 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-FP-8631       TCGA-FP-A4BE       TCGA-HF-7132       TCGA-HF-7136 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-HU-8243       TCGA-HU-8602       TCGA-HU-8604       TCGA-HU-8608 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-HU-A4G3       TCGA-HU-A4G8       TCGA-HU-A4GC       TCGA-HU-A4GD 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GN       TCGA-HU-A4GQ 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-HU-A4GT       TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H2 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6       TCGA-HU-A4H8 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-IP-7968 
"ENTPD2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ENTPD2 MUTATED        0      0      1      1      0      0
  ENTPD2 WILD-TYPE     47     39     34     31     23     35
D317V10, multiclass
[1] "Remove cluster labels:" "ENTPD2 MUTATED"        
clus
  ENTPD2 MUTATED ENTPD2 WILD-TYPE 
               2              209 
      TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6453       TCGA-BR-6454 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457       TCGA-BR-6458 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6710 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-7715       TCGA-BR-7717       TCGA-BR-7723       TCGA-BR-7851 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8077       TCGA-BR-8078 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-8080       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8297 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-8360       TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8370 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373       TCGA-BR-8380 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8487       TCGA-BR-8588 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-A44T       TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J6 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8534       TCGA-CD-8535 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-4449       TCGA-CG-5717 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5726 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8574       TCGA-D7-8575 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-D7-8576       TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YY       TCGA-D7-A4Z0       TCGA-EQ-5647 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-EQ-8122       TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-F1-A448       TCGA-FP-7735       TCGA-FP-7829       TCGA-FP-7998 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-FP-8099       TCGA-FP-8209       TCGA-FP-8210       TCGA-FP-8211 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-FP-8631       TCGA-FP-A4BE       TCGA-HF-7132       TCGA-HF-7136 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-HU-8243       TCGA-HU-8602       TCGA-HU-8604       TCGA-HU-8608 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-HU-A4G3       TCGA-HU-A4G8       TCGA-HU-A4GC       TCGA-HU-A4GD 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GN       TCGA-HU-A4GQ 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-HU-A4GT       TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H2 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6       TCGA-HU-A4H8 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" "ENTPD2 WILD-TYPE" 
      TCGA-IP-7968 
"ENTPD2 WILD-TYPE" 

Clustering(318) Variable = ITPR2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITPR2 MUTATED        2     15      2      3      3
  ITPR2 WILD-TYPE     77    111     25     40      9
D318V1, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             2              77
  CLUS_2            15             111
  CLUS_3             2              25
  CLUS_4             3              40
  CLUS_5             3               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPR2 MUTATED        2     10      4      2
  ITPR2 WILD-TYPE     69     66     30     61
D318V2, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             2              69
  CLUS_2            10              66
  CLUS_3             4              30
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITPR2 MUTATED        2      7      5      1      5
  ITPR2 WILD-TYPE     14     55     46     64     50
D318V3, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             7              55
  CLUS_3             5              46
  CLUS_4             1              64
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPR2 MUTATED        5     12      2      1
  ITPR2 WILD-TYPE     93     32     48     56
D318V4, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             5              93
  CLUS_2            12              32
  CLUS_3             2              48
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITPR2 MUTATED       14      1      3      3      1
  ITPR2 WILD-TYPE     48     58     37     34     58
D318V5, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1            14              48
  CLUS_2             1              58
  CLUS_3             3              37
  CLUS_4             3              34
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITPR2 MUTATED        6      1     15
  ITPR2 WILD-TYPE    100     53     82
D318V6, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             6             100
  CLUS_2             1              53
  CLUS_3            15              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITPR2 MUTATED       18      2      5
  ITPR2 WILD-TYPE    105     93     66
D318V7, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1            18             105
  CLUS_2             2              93
  CLUS_3             5              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITPR2 MUTATED       20      3      2
  ITPR2 WILD-TYPE    137     60     67
D318V8, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1            20             137
  CLUS_2             3              60
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ITPR2 MUTATED        2      1      7      4      0      1
  ITPR2 WILD-TYPE     31     18     52     35     16     44
D318V9, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              18
  CLUS_3             7              52
  CLUS_4             4              35
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ITPR2 MUTATED        7      1      5      1      0      1
  ITPR2 WILD-TYPE     40     38     30     31     23     34
D318V10, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             7              40
  CLUS_2             1              38
  CLUS_3             5              30
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(319) Variable = SOAT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOAT1 MUTATED        0      5      0      1      0
  SOAT1 WILD-TYPE     79    121     27     42     12
D319V1, multiclass
        clus
vv       SOAT1 MUTATED SOAT1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             5             121
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOAT1 MUTATED        0      4      1      0
  SOAT1 WILD-TYPE     71     72     33     63
D319V2, multiclass
        clus
vv       SOAT1 MUTATED SOAT1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             4              72
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOAT1 MUTATED        0      2      2      0      2
  SOAT1 WILD-TYPE     16     60     49     65     53
D319V3, multiclass
        clus
vv       SOAT1 MUTATED SOAT1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOAT1 MUTATED        2      3      1      0
  SOAT1 WILD-TYPE     96     41     49     57
D319V4, multiclass
        clus
vv       SOAT1 MUTATED SOAT1 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             3              41
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOAT1 MUTATED        2      0      1      2      0
  SOAT1 WILD-TYPE     60     59     39     35     59
D319V5, multiclass
        clus
vv       SOAT1 MUTATED SOAT1 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SOAT1 MUTATED        1      0      4
  SOAT1 WILD-TYPE    105     54     93
D319V6, multiclass
        clus
vv       SOAT1 MUTATED SOAT1 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SOAT1 MUTATED        5      1      0
  SOAT1 WILD-TYPE    118     94     71
D319V7, multiclass
        clus
vv       SOAT1 MUTATED SOAT1 WILD-TYPE
  CLUS_1             5             118
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SOAT1 MUTATED        6      0      0
  SOAT1 WILD-TYPE    151     63     69
D319V8, multiclass
        clus
vv       SOAT1 MUTATED SOAT1 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SOAT1 MUTATED        1      1      0      2      0      0
  SOAT1 WILD-TYPE     32     18     59     37     16     45
D319V9, multiclass
        clus
vv       SOAT1 MUTATED SOAT1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             0              59
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SOAT1 MUTATED        1      0      0      2      1      0
  SOAT1 WILD-TYPE     46     39     35     30     22     35
D319V10, multiclass
        clus
vv       SOAT1 MUTATED SOAT1 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              39
  CLUS_3             0              35
  CLUS_4             2              30
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(320) Variable = GPR82 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR82 MUTATED        1      6      1      1      0
  GPR82 WILD-TYPE     78    120     26     42     12
D320V1, multiclass
        clus
vv       GPR82 MUTATED GPR82 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             6             120
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR82 MUTATED        1      7      1      0
  GPR82 WILD-TYPE     70     69     33     63
D320V2, multiclass
        clus
vv       GPR82 MUTATED GPR82 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             7              69
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR82 MUTATED        0      2      3      0      3
  GPR82 WILD-TYPE     16     60     48     65     52
D320V3, multiclass
        clus
vv       GPR82 MUTATED GPR82 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR82 MUTATED        1      5      2      0
  GPR82 WILD-TYPE     97     39     48     57
D320V4, multiclass
        clus
vv       GPR82 MUTATED GPR82 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             5              39
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR82 MUTATED        4      0      1      2      1
  GPR82 WILD-TYPE     58     59     39     35     58
D320V5, multiclass
        clus
vv       GPR82 MUTATED GPR82 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             2              35
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR82 MUTATED        0      0      8
  GPR82 WILD-TYPE    106     54     89
D320V6, multiclass
        clus
vv       GPR82 MUTATED GPR82 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              54
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR82 MUTATED        7      1      1
  GPR82 WILD-TYPE    116     94     70
D320V7, multiclass
        clus
vv       GPR82 MUTATED GPR82 WILD-TYPE
  CLUS_1             7             116
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR82 MUTATED        7      1      1
  GPR82 WILD-TYPE    150     62     68
D320V8, multiclass
        clus
vv       GPR82 MUTATED GPR82 WILD-TYPE
  CLUS_1             7             150
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR82 MUTATED        2      1      2      2      0      0
  GPR82 WILD-TYPE     31     18     57     37     16     45
D320V9, multiclass
        clus
vv       GPR82 MUTATED GPR82 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              18
  CLUS_3             2              57
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR82 MUTATED        2      0      2      2      1      0
  GPR82 WILD-TYPE     45     39     33     30     22     35
D320V10, multiclass
        clus
vv       GPR82 MUTATED GPR82 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             2              30
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(321) Variable = ACTL6A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACTL6A MUTATED        0      6      2      0      0
  ACTL6A WILD-TYPE     79    120     25     43     12
D321V1, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              0               79
  CLUS_2              6              120
  CLUS_3              2               25
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL6A MUTATED        0      5      3      0
  ACTL6A WILD-TYPE     71     71     31     63
D321V2, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              0               71
  CLUS_2              5               71
  CLUS_3              3               31
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACTL6A MUTATED        1      0      3      1      2
  ACTL6A WILD-TYPE     15     62     48     64     53
D321V3, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              1               15
  CLUS_2              0               62
  CLUS_3              3               48
  CLUS_4              1               64
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL6A MUTATED        2      4      0      1
  ACTL6A WILD-TYPE     96     40     50     56
D321V4, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              2               96
  CLUS_2              4               40
  CLUS_3              0               50
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACTL6A MUTATED        3      0      2      1      0
  ACTL6A WILD-TYPE     59     59     38     36     59
D321V5, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              3               59
  CLUS_2              0               59
  CLUS_3              2               38
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTL6A MUTATED        1      0      5
  ACTL6A WILD-TYPE    105     54     92
D321V6, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               54
  CLUS_3              5               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTL6A MUTATED        6      1      1
  ACTL6A WILD-TYPE    117     94     70
D321V7, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              6              117
  CLUS_2              1               94
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTL6A MUTATED        7      1      0
  ACTL6A WILD-TYPE    150     62     69
D321V8, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              7              150
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACTL6A MUTATED        1      1      2      2      1      1
  ACTL6A WILD-TYPE     32     18     57     37     15     44
D321V9, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              2               37
  CLUS_5              1               15
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACTL6A MUTATED        1      1      2      3      1      0
  ACTL6A WILD-TYPE     46     38     33     29     22     35
D321V10, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              1               46
  CLUS_2              1               38
  CLUS_3              2               33
  CLUS_4              3               29
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(322) Variable = CTSD MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSD MUTATED        1      6      0      0      0
  CTSD WILD-TYPE     78    120     27     43     12
D322V1, multiclass
        clus
vv       CTSD MUTATED CTSD WILD-TYPE
  CLUS_1            1             78
  CLUS_2            6            120
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSD MUTATED        1      5      0      1
  CTSD WILD-TYPE     70     71     34     62
D322V2, multiclass
        clus
vv       CTSD MUTATED CTSD WILD-TYPE
  CLUS_1            1             70
  CLUS_2            5             71
  CLUS_3            0             34
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSD MUTATED        0      1      2      1      2
  CTSD WILD-TYPE     16     61     49     64     53
D322V3, multiclass
        clus
vv       CTSD MUTATED CTSD WILD-TYPE
  CLUS_1            0             16
  CLUS_2            1             61
  CLUS_3            2             49
  CLUS_4            1             64
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSD MUTATED        1      3      1      1
  CTSD WILD-TYPE     97     41     49     56
D322V4, multiclass
        clus
vv       CTSD MUTATED CTSD WILD-TYPE
  CLUS_1            1             97
  CLUS_2            3             41
  CLUS_3            1             49
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSD MUTATED        4      1      0      1      1
  CTSD WILD-TYPE     58     58     40     36     58
D322V5, multiclass
        clus
vv       CTSD MUTATED CTSD WILD-TYPE
  CLUS_1            4             58
  CLUS_2            1             58
  CLUS_3            0             40
  CLUS_4            1             36
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSD MUTATED        1      0      6
  CTSD WILD-TYPE    105     54     91
D322V6, multiclass
        clus
vv       CTSD MUTATED CTSD WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSD MUTATED        4      1      2
  CTSD WILD-TYPE    119     94     69
D322V7, multiclass
        clus
vv       CTSD MUTATED CTSD WILD-TYPE
  CLUS_1            4            119
  CLUS_2            1             94
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSD MUTATED        5      0      2
  CTSD WILD-TYPE    152     63     67
D322V8, multiclass
        clus
vv       CTSD MUTATED CTSD WILD-TYPE
  CLUS_1            5            152
  CLUS_2            0             63
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTSD MUTATED        1      1      3      1      1      0
  CTSD WILD-TYPE     32     18     56     38     15     45
D322V9, multiclass
        clus
vv       CTSD MUTATED CTSD WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            3             56
  CLUS_4            1             38
  CLUS_5            1             15
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTSD MUTATED        4      0      2      0      0      1
  CTSD WILD-TYPE     43     39     33     32     23     34
D322V10, multiclass
        clus
vv       CTSD MUTATED CTSD WILD-TYPE
  CLUS_1            4             43
  CLUS_2            0             39
  CLUS_3            2             33
  CLUS_4            0             32
  CLUS_5            0             23
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(323) Variable = GON4L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GON4L MUTATED        0      9      0      0      1
  GON4L WILD-TYPE     79    117     27     43     11
D323V1, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             0              79
  CLUS_2             9             117
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GON4L MUTATED        0      7      2      0
  GON4L WILD-TYPE     71     69     32     63
D323V2, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             0              71
  CLUS_2             7              69
  CLUS_3             2              32
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GON4L MUTATED        0      4      5      0      0
  GON4L WILD-TYPE     16     58     46     65     55
D323V3, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             0              16
  CLUS_2             4              58
  CLUS_3             5              46
  CLUS_4             0              65
  CLUS_5             0              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GON4L MUTATED        1      5      3      0
  GON4L WILD-TYPE     97     39     47     57
D323V4, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             1              97
  CLUS_2             5              39
  CLUS_3             3              47
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GON4L MUTATED        7      1      0      1      0
  GON4L WILD-TYPE     55     58     40     36     59
D323V5, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             7              55
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GON4L MUTATED        2      1      6
  GON4L WILD-TYPE    104     53     91
D323V6, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              53
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GON4L MUTATED        8      1      1
  GON4L WILD-TYPE    115     94     70
D323V7, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             8             115
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GON4L MUTATED        9      1      0
  GON4L WILD-TYPE    148     62     69
D323V8, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             9             148
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GON4L MUTATED        0      0      4      2      0      1
  GON4L WILD-TYPE     33     19     55     37     16     44
D323V9, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              19
  CLUS_3             4              55
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GON4L MUTATED        1      1      3      0      2      0
  GON4L WILD-TYPE     46     38     32     32     21     35
D323V10, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             0              32
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(324) Variable = KLC2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLC2 MUTATED        2      8      1      0      0
  KLC2 WILD-TYPE     77    118     26     43     12
D324V1, multiclass
        clus
vv       KLC2 MUTATED KLC2 WILD-TYPE
  CLUS_1            2             77
  CLUS_2            8            118
  CLUS_3            1             26
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLC2 MUTATED        3      3      2      1
  KLC2 WILD-TYPE     68     73     32     62
D324V2, multiclass
        clus
vv       KLC2 MUTATED KLC2 WILD-TYPE
  CLUS_1            3             68
  CLUS_2            3             73
  CLUS_3            2             32
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLC2 MUTATED        0      4      2      0      1
  KLC2 WILD-TYPE     16     58     49     65     54
D324V3, multiclass
        clus
vv       KLC2 MUTATED KLC2 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            4             58
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLC2 MUTATED        2      2      3      0
  KLC2 WILD-TYPE     96     42     47     57
D324V4, multiclass
        clus
vv       KLC2 MUTATED KLC2 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            2             42
  CLUS_3            3             47
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLC2 MUTATED        4      0      2      1      0
  KLC2 WILD-TYPE     58     59     38     36     59
D324V5, multiclass
        clus
vv       KLC2 MUTATED KLC2 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            0             59
  CLUS_3            2             38
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLC2 MUTATED        0      0      7
  KLC2 WILD-TYPE    106     54     90
D324V6, multiclass
        clus
vv       KLC2 MUTATED KLC2 WILD-TYPE
  CLUS_1            0            106
  CLUS_2            0             54
  CLUS_3            7             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLC2 MUTATED       10      1      0
  KLC2 WILD-TYPE    113     94     71
D324V7, multiclass
        clus
vv       KLC2 MUTATED KLC2 WILD-TYPE
  CLUS_1           10            113
  CLUS_2            1             94
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLC2 MUTATED       10      1      0
  KLC2 WILD-TYPE    147     62     69
D324V8, multiclass
        clus
vv       KLC2 MUTATED KLC2 WILD-TYPE
  CLUS_1           10            147
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KLC2 MUTATED        0      2      3      2      0      0
  KLC2 WILD-TYPE     33     17     56     37     16     45
D324V9, multiclass
        clus
vv       KLC2 MUTATED KLC2 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            2             17
  CLUS_3            3             56
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KLC2 MUTATED        2      0      3      2      0      0
  KLC2 WILD-TYPE     45     39     32     30     23     35
D324V10, multiclass
        clus
vv       KLC2 MUTATED KLC2 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            3             32
  CLUS_4            2             30
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(325) Variable = GNPNAT1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNPNAT1 MUTATED        0      3      0      1      0
  GNPNAT1 WILD-TYPE     79    123     27     42     12
D325V1, multiclass
        clus
vv       GNPNAT1 MUTATED GNPNAT1 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               3               123
  CLUS_3               0                27
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNPNAT1 MUTATED        0      2      0      1
  GNPNAT1 WILD-TYPE     71     74     34     62
D325V2, multiclass
        clus
vv       GNPNAT1 MUTATED GNPNAT1 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               2                74
  CLUS_3               0                34
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNPNAT1 MUTATED        1      1      0      1      1
  GNPNAT1 WILD-TYPE     15     61     51     64     54
D325V3, multiclass
        clus
vv       GNPNAT1 MUTATED GNPNAT1 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               1                61
  CLUS_3               0                51
  CLUS_4               1                64
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNPNAT1 MUTATED        1      1      1      1
  GNPNAT1 WILD-TYPE     97     43     49     56
D325V4, multiclass
        clus
vv       GNPNAT1 MUTATED GNPNAT1 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               1                43
  CLUS_3               1                49
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNPNAT1 MUTATED        2      0      0      1      0
  GNPNAT1 WILD-TYPE     60     59     40     36     59
D325V5, multiclass
        clus
vv       GNPNAT1 MUTATED GNPNAT1 WILD-TYPE
  CLUS_1               2                60
  CLUS_2               0                59
  CLUS_3               0                40
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GNPNAT1 MUTATED        2      0      1
  GNPNAT1 WILD-TYPE    104     54     96
D325V6, multiclass
        clus
vv       GNPNAT1 MUTATED GNPNAT1 WILD-TYPE
  CLUS_1               2               104
  CLUS_2               0                54
  CLUS_3               1                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GNPNAT1 MUTATED        3      1      0
  GNPNAT1 WILD-TYPE    120     94     71
D325V7, multiclass
        clus
vv       GNPNAT1 MUTATED GNPNAT1 WILD-TYPE
  CLUS_1               3               120
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GNPNAT1 MUTATED        3      1      0
  GNPNAT1 WILD-TYPE    154     62     69
D325V8, multiclass
        clus
vv       GNPNAT1 MUTATED GNPNAT1 WILD-TYPE
  CLUS_1               3               154
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GNPNAT1 MUTATED        0      0      2      1      0      0
  GNPNAT1 WILD-TYPE     33     19     57     38     16     45
D325V9, multiclass
        clus
vv       GNPNAT1 MUTATED GNPNAT1 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               0                19
  CLUS_3               2                57
  CLUS_4               1                38
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GNPNAT1 MUTATED        0      0      2      1      0      0
  GNPNAT1 WILD-TYPE     47     39     33     31     23     35
D325V10, multiclass
        clus
vv       GNPNAT1 MUTATED GNPNAT1 WILD-TYPE
  CLUS_1               0                47
  CLUS_2               0                39
  CLUS_3               2                33
  CLUS_4               1                31
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(326) Variable = RBM6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM6 MUTATED        1     15      1      2      1
  RBM6 WILD-TYPE     78    111     26     41     11
D326V1, multiclass
        clus
vv       RBM6 MUTATED RBM6 WILD-TYPE
  CLUS_1            1             78
  CLUS_2           15            111
  CLUS_3            1             26
  CLUS_4            2             41
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM6 MUTATED        1      9      2      0
  RBM6 WILD-TYPE     70     67     32     63
D326V2, multiclass
        clus
vv       RBM6 MUTATED RBM6 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            9             67
  CLUS_3            2             32
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM6 MUTATED        0     10      3      1      4
  RBM6 WILD-TYPE     16     52     48     64     51
D326V3, multiclass
        clus
vv       RBM6 MUTATED RBM6 WILD-TYPE
  CLUS_1            0             16
  CLUS_2           10             52
  CLUS_3            3             48
  CLUS_4            1             64
  CLUS_5            4             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM6 MUTATED        1      9      7      1
  RBM6 WILD-TYPE     97     35     43     56
D326V4, multiclass
        clus
vv       RBM6 MUTATED RBM6 WILD-TYPE
  CLUS_1            1             97
  CLUS_2            9             35
  CLUS_3            7             43
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM6 MUTATED       10      1      1      5      0
  RBM6 WILD-TYPE     52     58     39     32     59
D326V5, multiclass
        clus
vv       RBM6 MUTATED RBM6 WILD-TYPE
  CLUS_1           10             52
  CLUS_2            1             58
  CLUS_3            1             39
  CLUS_4            5             32
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBM6 MUTATED        2      0     15
  RBM6 WILD-TYPE    104     54     82
D326V6, multiclass
        clus
vv       RBM6 MUTATED RBM6 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            0             54
  CLUS_3           15             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBM6 MUTATED       17      2      1
  RBM6 WILD-TYPE    106     93     70
D326V7, multiclass
        clus
vv       RBM6 MUTATED RBM6 WILD-TYPE
  CLUS_1           17            106
  CLUS_2            2             93
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBM6 MUTATED       18      1      1
  RBM6 WILD-TYPE    139     62     68
D326V8, multiclass
        clus
vv       RBM6 MUTATED RBM6 WILD-TYPE
  CLUS_1           18            139
  CLUS_2            1             62
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RBM6 MUTATED        1      3      5      2      0      0
  RBM6 WILD-TYPE     32     16     54     37     16     45
D326V9, multiclass
        clus
vv       RBM6 MUTATED RBM6 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            3             16
  CLUS_3            5             54
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RBM6 MUTATED        5      0      3      1      2      0
  RBM6 WILD-TYPE     42     39     32     31     21     35
D326V10, multiclass
        clus
vv       RBM6 MUTATED RBM6 WILD-TYPE
  CLUS_1            5             42
  CLUS_2            0             39
  CLUS_3            3             32
  CLUS_4            1             31
  CLUS_5            2             21
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(327) Variable = SLC26A7 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC26A7 MUTATED        1     10      0      1      1
  SLC26A7 WILD-TYPE     78    116     27     42     11
D327V1, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               1                78
  CLUS_2              10               116
  CLUS_3               0                27
  CLUS_4               1                42
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A7 MUTATED        4      6      1      1
  SLC26A7 WILD-TYPE     67     70     33     62
D327V2, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               4                67
  CLUS_2               6                70
  CLUS_3               1                33
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC26A7 MUTATED        1      2      4      0      5
  SLC26A7 WILD-TYPE     15     60     47     65     50
D327V3, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               2                60
  CLUS_3               4                47
  CLUS_4               0                65
  CLUS_5               5                50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A7 MUTATED        3      6      2      1
  SLC26A7 WILD-TYPE     95     38     48     56
D327V4, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               3                95
  CLUS_2               6                38
  CLUS_3               2                48
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC26A7 MUTATED        5      0      4      3      0
  SLC26A7 WILD-TYPE     57     59     36     34     59
D327V5, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               5                57
  CLUS_2               0                59
  CLUS_3               4                36
  CLUS_4               3                34
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A7 MUTATED        2      0     10
  SLC26A7 WILD-TYPE    104     54     87
D327V6, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               2               104
  CLUS_2               0                54
  CLUS_3              10                87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A7 MUTATED       10      1      3
  SLC26A7 WILD-TYPE    113     94     68
D327V7, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1              10               113
  CLUS_2               1                94
  CLUS_3               3                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A7 MUTATED       11      1      2
  SLC26A7 WILD-TYPE    146     62     67
D327V8, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1              11               146
  CLUS_2               1                62
  CLUS_3               2                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC26A7 MUTATED        3      3      3      2      0      0
  SLC26A7 WILD-TYPE     30     16     56     37     16     45
D327V9, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               3                30
  CLUS_2               3                16
  CLUS_3               3                56
  CLUS_4               2                37
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC26A7 MUTATED        7      0      2      0      2      0
  SLC26A7 WILD-TYPE     40     39     33     32     21     35
D327V10, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               7                40
  CLUS_2               0                39
  CLUS_3               2                33
  CLUS_4               0                32
  CLUS_5               2                21
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(328) Variable = OR5M3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR5M3 MUTATED        4     10      0      1      0
  OR5M3 WILD-TYPE     75    116     27     42     12
D328V1, multiclass
        clus
vv       OR5M3 MUTATED OR5M3 WILD-TYPE
  CLUS_1             4              75
  CLUS_2            10             116
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5M3 MUTATED        3      8      1      1
  OR5M3 WILD-TYPE     68     68     33     62
D328V2, multiclass
        clus
vv       OR5M3 MUTATED OR5M3 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             8              68
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR5M3 MUTATED        0      6      3      2      1
  OR5M3 WILD-TYPE     16     56     48     63     54
D328V3, multiclass
        clus
vv       OR5M3 MUTATED OR5M3 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             6              56
  CLUS_3             3              48
  CLUS_4             2              63
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5M3 MUTATED        2      4      5      1
  OR5M3 WILD-TYPE     96     40     45     56
D328V4, multiclass
        clus
vv       OR5M3 MUTATED OR5M3 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             4              40
  CLUS_3             5              45
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR5M3 MUTATED        6      0      1      5      2
  OR5M3 WILD-TYPE     56     59     39     32     57
D328V5, multiclass
        clus
vv       OR5M3 MUTATED OR5M3 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             5              32
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5M3 MUTATED        3      1     10
  OR5M3 WILD-TYPE    103     53     87
D328V6, multiclass
        clus
vv       OR5M3 MUTATED OR5M3 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             1              53
  CLUS_3            10              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5M3 MUTATED        9      2      4
  OR5M3 WILD-TYPE    114     93     67
D328V7, multiclass
        clus
vv       OR5M3 MUTATED OR5M3 WILD-TYPE
  CLUS_1             9             114
  CLUS_2             2              93
  CLUS_3             4              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5M3 MUTATED       11      1      3
  OR5M3 WILD-TYPE    146     62     66
D328V8, multiclass
        clus
vv       OR5M3 MUTATED OR5M3 WILD-TYPE
  CLUS_1            11             146
  CLUS_2             1              62
  CLUS_3             3              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR5M3 MUTATED        3      1      2      5      0      0
  OR5M3 WILD-TYPE     30     18     57     34     16     45
D328V9, multiclass
        clus
vv       OR5M3 MUTATED OR5M3 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             1              18
  CLUS_3             2              57
  CLUS_4             5              34
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR5M3 MUTATED        4      0      1      1      3      2
  OR5M3 WILD-TYPE     43     39     34     31     20     33
D328V10, multiclass
        clus
vv       OR5M3 MUTATED OR5M3 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             1              31
  CLUS_5             3              20
  CLUS_6             2              33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(329) Variable = MSL3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MSL3 MUTATED        1      8      1      0      0
  MSL3 WILD-TYPE     78    118     26     43     12
D329V1, multiclass
        clus
vv       MSL3 MUTATED MSL3 WILD-TYPE
  CLUS_1            1             78
  CLUS_2            8            118
  CLUS_3            1             26
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSL3 MUTATED        0      4      2      4
  MSL3 WILD-TYPE     71     72     32     59
D329V2, multiclass
        clus
vv       MSL3 MUTATED MSL3 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            4             72
  CLUS_3            2             32
  CLUS_4            4             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MSL3 MUTATED        1      2      2      2      2
  MSL3 WILD-TYPE     15     60     49     63     53
D329V3, multiclass
        clus
vv       MSL3 MUTATED MSL3 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            2             60
  CLUS_3            2             49
  CLUS_4            2             63
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSL3 MUTATED        5      1      2      1
  MSL3 WILD-TYPE     93     43     48     56
D329V4, multiclass
        clus
vv       MSL3 MUTATED MSL3 WILD-TYPE
  CLUS_1            5             93
  CLUS_2            1             43
  CLUS_3            2             48
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MSL3 MUTATED        5      1      1      2      0
  MSL3 WILD-TYPE     57     58     39     35     59
D329V5, multiclass
        clus
vv       MSL3 MUTATED MSL3 WILD-TYPE
  CLUS_1            5             57
  CLUS_2            1             58
  CLUS_3            1             39
  CLUS_4            2             35
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSL3 MUTATED        3      2      4
  MSL3 WILD-TYPE    103     52     93
D329V6, multiclass
        clus
vv       MSL3 MUTATED MSL3 WILD-TYPE
  CLUS_1            3            103
  CLUS_2            2             52
  CLUS_3            4             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSL3 MUTATED        7      3      0
  MSL3 WILD-TYPE    116     92     71
D329V7, multiclass
        clus
vv       MSL3 MUTATED MSL3 WILD-TYPE
  CLUS_1            7            116
  CLUS_2            3             92
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSL3 MUTATED        7      3      0
  MSL3 WILD-TYPE    150     60     69
D329V8, multiclass
        clus
vv       MSL3 MUTATED MSL3 WILD-TYPE
  CLUS_1            7            150
  CLUS_2            3             60
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MSL3 MUTATED        0      0      4      2      0      2
  MSL3 WILD-TYPE     33     19     55     37     16     43
D329V9, multiclass
        clus
vv       MSL3 MUTATED MSL3 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             19
  CLUS_3            4             55
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            2             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MSL3 MUTATED        2      2      2      2      0      0
  MSL3 WILD-TYPE     45     37     33     30     23     35
D329V10, multiclass
        clus
vv       MSL3 MUTATED MSL3 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            2             37
  CLUS_3            2             33
  CLUS_4            2             30
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(330) Variable = CTNNA1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNNA1 MUTATED        1     10      0      1      1
  CTNNA1 WILD-TYPE     78    116     27     42     11
D330V1, multiclass
        clus
vv       CTNNA1 MUTATED CTNNA1 WILD-TYPE
  CLUS_1              1               78
  CLUS_2             10              116
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNA1 MUTATED        1      7      0      4
  CTNNA1 WILD-TYPE     70     69     34     59
D330V2, multiclass
        clus
vv       CTNNA1 MUTATED CTNNA1 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              7               69
  CLUS_3              0               34
  CLUS_4              4               59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNNA1 MUTATED        2      3      2      2      4
  CTNNA1 WILD-TYPE     14     59     49     63     51
D330V3, multiclass
        clus
vv       CTNNA1 MUTATED CTNNA1 WILD-TYPE
  CLUS_1              2               14
  CLUS_2              3               59
  CLUS_3              2               49
  CLUS_4              2               63
  CLUS_5              4               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNA1 MUTATED        3      5      2      3
  CTNNA1 WILD-TYPE     95     39     48     54
D330V4, multiclass
        clus
vv       CTNNA1 MUTATED CTNNA1 WILD-TYPE
  CLUS_1              3               95
  CLUS_2              5               39
  CLUS_3              2               48
  CLUS_4              3               54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNNA1 MUTATED        8      2      0      1      1
  CTNNA1 WILD-TYPE     54     57     40     36     58
D330V5, multiclass
        clus
vv       CTNNA1 MUTATED CTNNA1 WILD-TYPE
  CLUS_1              8               54
  CLUS_2              2               57
  CLUS_3              0               40
  CLUS_4              1               36
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNA1 MUTATED        4      2      6
  CTNNA1 WILD-TYPE    102     52     91
D330V6, multiclass
        clus
vv       CTNNA1 MUTATED CTNNA1 WILD-TYPE
  CLUS_1              4              102
  CLUS_2              2               52
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNA1 MUTATED        7      2      4
  CTNNA1 WILD-TYPE    116     93     67
D330V7, multiclass
        clus
vv       CTNNA1 MUTATED CTNNA1 WILD-TYPE
  CLUS_1              7              116
  CLUS_2              2               93
  CLUS_3              4               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNA1 MUTATED       10      2      1
  CTNNA1 WILD-TYPE    147     61     68
D330V8, multiclass
        clus
vv       CTNNA1 MUTATED CTNNA1 WILD-TYPE
  CLUS_1             10              147
  CLUS_2              2               61
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTNNA1 MUTATED        3      1      4      2      0      1
  CTNNA1 WILD-TYPE     30     18     55     37     16     44
D330V9, multiclass
        clus
vv       CTNNA1 MUTATED CTNNA1 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              1               18
  CLUS_3              4               55
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTNNA1 MUTATED        5      1      3      2      0      0
  CTNNA1 WILD-TYPE     42     38     32     30     23     35
D330V10, multiclass
        clus
vv       CTNNA1 MUTATED CTNNA1 WILD-TYPE
  CLUS_1              5               42
  CLUS_2              1               38
  CLUS_3              3               32
  CLUS_4              2               30
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(331) Variable = MMP3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP3 MUTATED        0      7      0      1      0
  MMP3 WILD-TYPE     79    119     27     42     12
D331V1, multiclass
        clus
vv       MMP3 MUTATED MMP3 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            7            119
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP3 MUTATED        0      4      1      2
  MMP3 WILD-TYPE     71     72     33     61
D331V2, multiclass
        clus
vv       MMP3 MUTATED MMP3 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            4             72
  CLUS_3            1             33
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP3 MUTATED        1      2      2      0      2
  MMP3 WILD-TYPE     15     60     49     65     53
D331V3, multiclass
        clus
vv       MMP3 MUTATED MMP3 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            2             60
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP3 MUTATED        1      5      1      0
  MMP3 WILD-TYPE     97     39     49     57
D331V4, multiclass
        clus
vv       MMP3 MUTATED MMP3 WILD-TYPE
  CLUS_1            1             97
  CLUS_2            5             39
  CLUS_3            1             49
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP3 MUTATED        7      0      1      0      0
  MMP3 WILD-TYPE     55     59     39     37     59
D331V5, multiclass
        clus
vv       MMP3 MUTATED MMP3 WILD-TYPE
  CLUS_1            7             55
  CLUS_2            0             59
  CLUS_3            1             39
  CLUS_4            0             37
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MMP3 MUTATED        3      0      5
  MMP3 WILD-TYPE    103     54     92
D331V6, multiclass
        clus
vv       MMP3 MUTATED MMP3 WILD-TYPE
  CLUS_1            3            103
  CLUS_2            0             54
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MMP3 MUTATED        7      0      1
  MMP3 WILD-TYPE    116     95     70
D331V7, multiclass
        clus
vv       MMP3 MUTATED MMP3 WILD-TYPE
  CLUS_1            7            116
  CLUS_2            0             95
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MMP3 MUTATED        7      1      0
  MMP3 WILD-TYPE    150     62     69
D331V8, multiclass
        clus
vv       MMP3 MUTATED MMP3 WILD-TYPE
  CLUS_1            7            150
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MMP3 MUTATED        0      0      4      3      0      0
  MMP3 WILD-TYPE     33     19     55     36     16     45
D331V9, multiclass
        clus
vv       MMP3 MUTATED MMP3 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             19
  CLUS_3            4             55
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MMP3 MUTATED        2      0      3      1      1      0
  MMP3 WILD-TYPE     45     39     32     31     22     35
D331V10, multiclass
        clus
vv       MMP3 MUTATED MMP3 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            3             32
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(332) Variable = ALDH2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALDH2 MUTATED        0      6      2      1      0
  ALDH2 WILD-TYPE     79    120     25     42     12
D332V1, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDH2 MUTATED        0      5      2      1
  ALDH2 WILD-TYPE     71     71     32     62
D332V2, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             5              71
  CLUS_3             2              32
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALDH2 MUTATED        2      1      3      0      2
  ALDH2 WILD-TYPE     14     61     48     65     53
D332V3, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             1              61
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDH2 MUTATED        2      5      1      0
  ALDH2 WILD-TYPE     96     39     49     57
D332V4, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             5              39
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALDH2 MUTATED        3      0      1      3      0
  ALDH2 WILD-TYPE     59     59     39     34     59
D332V5, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALDH2 MUTATED        1      0      6
  ALDH2 WILD-TYPE    105     54     91
D332V6, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALDH2 MUTATED        7      2      0
  ALDH2 WILD-TYPE    116     93     71
D332V7, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             7             116
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALDH2 MUTATED        8      1      0
  ALDH2 WILD-TYPE    149     62     69
D332V8, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             8             149
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ALDH2 MUTATED        1      1      2      2      0      1
  ALDH2 WILD-TYPE     32     18     57     37     16     44
D332V9, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             2              57
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ALDH2 MUTATED        1      1      2      1      2      0
  ALDH2 WILD-TYPE     46     38     33     31     21     35
D332V10, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              38
  CLUS_3             2              33
  CLUS_4             1              31
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(333) Variable = SOS2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOS2 MUTATED        3     15      0      0      1
  SOS2 WILD-TYPE     76    111     27     43     11
D333V1, multiclass
        clus
vv       SOS2 MUTATED SOS2 WILD-TYPE
  CLUS_1            3             76
  CLUS_2           15            111
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOS2 MUTATED        2     10      2      2
  SOS2 WILD-TYPE     69     66     32     61
D333V2, multiclass
        clus
vv       SOS2 MUTATED SOS2 WILD-TYPE
  CLUS_1            2             69
  CLUS_2           10             66
  CLUS_3            2             32
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOS2 MUTATED        2      5      4      3      3
  SOS2 WILD-TYPE     14     57     47     62     52
D333V3, multiclass
        clus
vv       SOS2 MUTATED SOS2 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            5             57
  CLUS_3            4             47
  CLUS_4            3             62
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOS2 MUTATED        4      6      5      2
  SOS2 WILD-TYPE     94     38     45     55
D333V4, multiclass
        clus
vv       SOS2 MUTATED SOS2 WILD-TYPE
  CLUS_1            4             94
  CLUS_2            6             38
  CLUS_3            5             45
  CLUS_4            2             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOS2 MUTATED       11      2      1      2      1
  SOS2 WILD-TYPE     51     57     39     35     58
D333V5, multiclass
        clus
vv       SOS2 MUTATED SOS2 WILD-TYPE
  CLUS_1           11             51
  CLUS_2            2             57
  CLUS_3            1             39
  CLUS_4            2             35
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOS2 MUTATED        1      3     13
  SOS2 WILD-TYPE    105     51     84
D333V6, multiclass
        clus
vv       SOS2 MUTATED SOS2 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            3             51
  CLUS_3           13             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOS2 MUTATED        9      5      5
  SOS2 WILD-TYPE    114     90     66
D333V7, multiclass
        clus
vv       SOS2 MUTATED SOS2 WILD-TYPE
  CLUS_1            9            114
  CLUS_2            5             90
  CLUS_3            5             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOS2 MUTATED       14      3      2
  SOS2 WILD-TYPE    143     60     67
D333V8, multiclass
        clus
vv       SOS2 MUTATED SOS2 WILD-TYPE
  CLUS_1           14            143
  CLUS_2            3             60
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SOS2 MUTATED        1      0      4      6      0      1
  SOS2 WILD-TYPE     32     19     55     33     16     44
D333V9, multiclass
        clus
vv       SOS2 MUTATED SOS2 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             19
  CLUS_3            4             55
  CLUS_4            6             33
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SOS2 MUTATED        5      1      2      1      3      0
  SOS2 WILD-TYPE     42     38     33     31     20     35
D333V10, multiclass
        clus
vv       SOS2 MUTATED SOS2 WILD-TYPE
  CLUS_1            5             42
  CLUS_2            1             38
  CLUS_3            2             33
  CLUS_4            1             31
  CLUS_5            3             20
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(334) Variable = OR4K5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR4K5 MUTATED        2      7      0      2      0
  OR4K5 WILD-TYPE     77    119     27     41     12
D334V1, multiclass
        clus
vv       OR4K5 MUTATED OR4K5 WILD-TYPE
  CLUS_1             2              77
  CLUS_2             7             119
  CLUS_3             0              27
  CLUS_4             2              41
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4K5 MUTATED        3      6      1      1
  OR4K5 WILD-TYPE     68     70     33     62
D334V2, multiclass
        clus
vv       OR4K5 MUTATED OR4K5 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             6              70
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR4K5 MUTATED        0      3      3      0      5
  OR4K5 WILD-TYPE     16     59     48     65     50
D334V3, multiclass
        clus
vv       OR4K5 MUTATED OR4K5 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              59
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4K5 MUTATED        2      7      1      1
  OR4K5 WILD-TYPE     96     37     49     56
D334V4, multiclass
        clus
vv       OR4K5 MUTATED OR4K5 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             7              37
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR4K5 MUTATED        5      0      2      2      1
  OR4K5 WILD-TYPE     57     59     38     35     58
D334V5, multiclass
        clus
vv       OR4K5 MUTATED OR4K5 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             0              59
  CLUS_3             2              38
  CLUS_4             2              35
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4K5 MUTATED        2      0      8
  OR4K5 WILD-TYPE    104     54     89
D334V6, multiclass
        clus
vv       OR4K5 MUTATED OR4K5 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4K5 MUTATED       10      1      1
  OR4K5 WILD-TYPE    113     94     70
D334V7, multiclass
        clus
vv       OR4K5 MUTATED OR4K5 WILD-TYPE
  CLUS_1            10             113
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4K5 MUTATED       10      0      2
  OR4K5 WILD-TYPE    147     63     67
D334V8, multiclass
        clus
vv       OR4K5 MUTATED OR4K5 WILD-TYPE
  CLUS_1            10             147
  CLUS_2             0              63
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR4K5 MUTATED        2      1      3      1      0      1
  OR4K5 WILD-TYPE     31     18     56     38     16     44
D334V9, multiclass
        clus
vv       OR4K5 MUTATED OR4K5 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              18
  CLUS_3             3              56
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR4K5 MUTATED        5      0      1      1      0      1
  OR4K5 WILD-TYPE     42     39     34     31     23     34
D334V10, multiclass
        clus
vv       OR4K5 MUTATED OR4K5 WILD-TYPE
  CLUS_1             5              42
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(335) Variable = PLXNA2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLXNA2 MUTATED        3     15      2      1      1
  PLXNA2 WILD-TYPE     76    111     25     42     11
D335V1, multiclass
        clus
vv       PLXNA2 MUTATED PLXNA2 WILD-TYPE
  CLUS_1              3               76
  CLUS_2             15              111
  CLUS_3              2               25
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA2 MUTATED        2     10      3      3
  PLXNA2 WILD-TYPE     69     66     31     60
D335V2, multiclass
        clus
vv       PLXNA2 MUTATED PLXNA2 WILD-TYPE
  CLUS_1              2               69
  CLUS_2             10               66
  CLUS_3              3               31
  CLUS_4              3               60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLXNA2 MUTATED        1     10      3      0      7
  PLXNA2 WILD-TYPE     15     52     48     65     48
D335V3, multiclass
        clus
vv       PLXNA2 MUTATED PLXNA2 WILD-TYPE
  CLUS_1              1               15
  CLUS_2             10               52
  CLUS_3              3               48
  CLUS_4              0               65
  CLUS_5              7               48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLXNA2 MUTATED        3     12      6      0
  PLXNA2 WILD-TYPE     95     32     44     57
D335V4, multiclass
        clus
vv       PLXNA2 MUTATED PLXNA2 WILD-TYPE
  CLUS_1              3               95
  CLUS_2             12               32
  CLUS_3              6               44
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLXNA2 MUTATED       11      0      1      3      2
  PLXNA2 WILD-TYPE     51     59     39     34     57
D335V5, multiclass
        clus
vv       PLXNA2 MUTATED PLXNA2 WILD-TYPE
  CLUS_1             11               51
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              3               34
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA2 MUTATED        5      0     12
  PLXNA2 WILD-TYPE    101     54     85
D335V6, multiclass
        clus
vv       PLXNA2 MUTATED PLXNA2 WILD-TYPE
  CLUS_1              5              101
  CLUS_2              0               54
  CLUS_3             12               85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA2 MUTATED       19      2      2
  PLXNA2 WILD-TYPE    104     93     69
D335V7, multiclass
        clus
vv       PLXNA2 MUTATED PLXNA2 WILD-TYPE
  CLUS_1             19              104
  CLUS_2              2               93
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLXNA2 MUTATED       19      2      2
  PLXNA2 WILD-TYPE    138     61     67
D335V8, multiclass
        clus
vv       PLXNA2 MUTATED PLXNA2 WILD-TYPE
  CLUS_1             19              138
  CLUS_2              2               61
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLXNA2 MUTATED        4      2      7      1      0      1
  PLXNA2 WILD-TYPE     29     17     52     38     16     44
D335V9, multiclass
        clus
vv       PLXNA2 MUTATED PLXNA2 WILD-TYPE
  CLUS_1              4               29
  CLUS_2              2               17
  CLUS_3              7               52
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLXNA2 MUTATED        7      1      5      1      0      1
  PLXNA2 WILD-TYPE     40     38     30     31     23     34
D335V10, multiclass
        clus
vv       PLXNA2 MUTATED PLXNA2 WILD-TYPE
  CLUS_1              7               40
  CLUS_2              1               38
  CLUS_3              5               30
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(336) Variable = C15ORF52 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C15ORF52 MUTATED        0      7      1      0      0
  C15ORF52 WILD-TYPE     79    119     26     43     12
D336V1, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                0                 79
  CLUS_2                7                119
  CLUS_3                1                 26
  CLUS_4                0                 43
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C15ORF52 MUTATED        0      6      0      0
  C15ORF52 WILD-TYPE     71     70     34     63
D336V2, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                0                 71
  CLUS_2                6                 70
  CLUS_3                0                 34
  CLUS_4                0                 63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C15ORF52 MUTATED        0      4      0      0      3
  C15ORF52 WILD-TYPE     16     58     51     65     52
D336V3, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                4                 58
  CLUS_3                0                 51
  CLUS_4                0                 65
  CLUS_5                3                 52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C15ORF52 MUTATED        1      3      3      0
  C15ORF52 WILD-TYPE     97     41     47     57
D336V4, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                1                 97
  CLUS_2                3                 41
  CLUS_3                3                 47
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C15ORF52 MUTATED        2      1      2      3      0
  C15ORF52 WILD-TYPE     60     58     38     34     59
D336V5, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                2                 60
  CLUS_2                1                 58
  CLUS_3                2                 38
  CLUS_4                3                 34
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF52 MUTATED        2      0      6
  C15ORF52 WILD-TYPE    104     54     91
D336V6, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                2                104
  CLUS_2                0                 54
  CLUS_3                6                 91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF52 MUTATED        7      1      0
  C15ORF52 WILD-TYPE    116     94     71
D336V7, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                7                116
  CLUS_2                1                 94
  CLUS_3                0                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF52 MUTATED        8      0      0
  C15ORF52 WILD-TYPE    149     63     69
D336V8, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                8                149
  CLUS_2                0                 63
  CLUS_3                0                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C15ORF52 MUTATED        1      2      0      3      0      0
  C15ORF52 WILD-TYPE     32     17     59     36     16     45
D336V9, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                2                 17
  CLUS_3                0                 59
  CLUS_4                3                 36
  CLUS_5                0                 16
  CLUS_6                0                 45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C15ORF52 MUTATED        4      0      0      1      1      0
  C15ORF52 WILD-TYPE     43     39     35     31     22     35
D336V10, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                4                 43
  CLUS_2                0                 39
  CLUS_3                0                 35
  CLUS_4                1                 31
  CLUS_5                1                 22
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(337) Variable = CBLL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBLL1 MUTATED        1      4      0      0      1
  CBLL1 WILD-TYPE     78    122     27     43     11
D337V1, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             4             122
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLL1 MUTATED        1      2      1      0
  CBLL1 WILD-TYPE     70     74     33     63
D337V2, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             2              74
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBLL1 MUTATED        0      0      3      1      2
  CBLL1 WILD-TYPE     16     62     48     64     53
D337V3, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             0              62
  CLUS_3             3              48
  CLUS_4             1              64
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLL1 MUTATED        2      2      0      2
  CBLL1 WILD-TYPE     96     42     50     55
D337V4, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             2              42
  CLUS_3             0              50
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBLL1 MUTATED        1      2      0      2      1
  CBLL1 WILD-TYPE     61     57     40     35     58
D337V5, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             2              57
  CLUS_3             0              40
  CLUS_4             2              35
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBLL1 MUTATED        2      1      3
  CBLL1 WILD-TYPE    104     53     94
D337V6, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              53
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBLL1 MUTATED        3      3      0
  CBLL1 WILD-TYPE    120     92     71
D337V7, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             3             120
  CLUS_2             3              92
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBLL1 MUTATED        3      2      1
  CBLL1 WILD-TYPE    154     61     68
D337V8, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             3             154
  CLUS_2             2              61
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CBLL1 MUTATED        0      1      1      0      0      1
  CBLL1 WILD-TYPE     33     18     58     39     16     44
D337V9, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              18
  CLUS_3             1              58
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CBLL1 MUTATED        1      0      0      1      0      1
  CBLL1 WILD-TYPE     46     39     35     31     23     34
D337V10, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              39
  CLUS_3             0              35
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(338) Variable = KIAA1804 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1804 MUTATED        2      5      0      0      0
  KIAA1804 WILD-TYPE     77    121     27     43     12
D338V1, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                2                 77
  CLUS_2                5                121
  CLUS_3                0                 27
  CLUS_4                0                 43
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1804 MUTATED        0      4      0      1
  KIAA1804 WILD-TYPE     71     72     34     62
D338V2, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                0                 71
  CLUS_2                4                 72
  CLUS_3                0                 34
  CLUS_4                1                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1804 MUTATED        1      2      1      2      2
  KIAA1804 WILD-TYPE     15     60     50     63     53
D338V3, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                2                 60
  CLUS_3                1                 50
  CLUS_4                2                 63
  CLUS_5                2                 53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1804 MUTATED        3      3      1      1
  KIAA1804 WILD-TYPE     95     41     49     56
D338V4, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                3                 95
  CLUS_2                3                 41
  CLUS_3                1                 49
  CLUS_4                1                 56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1804 MUTATED        2      2      1      1      2
  KIAA1804 WILD-TYPE     60     57     39     36     57
D338V5, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                2                 60
  CLUS_2                2                 57
  CLUS_3                1                 39
  CLUS_4                1                 36
  CLUS_5                2                 57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1804 MUTATED        2      2      4
  KIAA1804 WILD-TYPE    104     52     93
D338V6, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                2                104
  CLUS_2                2                 52
  CLUS_3                4                 93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1804 MUTATED        7      0      1
  KIAA1804 WILD-TYPE    116     95     70
D338V7, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                7                116
  CLUS_2                0                 95
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1804 MUTATED        5      0      3
  KIAA1804 WILD-TYPE    152     63     66
D338V8, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                5                152
  CLUS_2                0                 63
  CLUS_3                3                 66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1804 MUTATED        2      1      2      0      0      0
  KIAA1804 WILD-TYPE     31     18     57     39     16     45
D338V9, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                1                 18
  CLUS_3                2                 57
  CLUS_4                0                 39
  CLUS_5                0                 16
  CLUS_6                0                 45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1804 MUTATED        1      0      2      2      0      0
  KIAA1804 WILD-TYPE     46     39     33     30     23     35
D338V10, multiclass
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  CLUS_1                1                 46
  CLUS_2                0                 39
  CLUS_3                2                 33
  CLUS_4                2                 30
  CLUS_5                0                 23
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(339) Variable = PGBD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGBD1 MUTATED        0     10      1      0      1
  PGBD1 WILD-TYPE     79    116     26     43     11
D339V1, multiclass
        clus
vv       PGBD1 MUTATED PGBD1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2            10             116
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGBD1 MUTATED        1      6      1      0
  PGBD1 WILD-TYPE     70     70     33     63
D339V2, multiclass
        clus
vv       PGBD1 MUTATED PGBD1 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             6              70
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGBD1 MUTATED        0      4      6      0      2
  PGBD1 WILD-TYPE     16     58     45     65     53
D339V3, multiclass
        clus
vv       PGBD1 MUTATED PGBD1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             4              58
  CLUS_3             6              45
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGBD1 MUTATED        2      7      3      0
  PGBD1 WILD-TYPE     96     37     47     57
D339V4, multiclass
        clus
vv       PGBD1 MUTATED PGBD1 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             7              37
  CLUS_3             3              47
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGBD1 MUTATED        6      1      2      1      0
  PGBD1 WILD-TYPE     56     58     38     36     59
D339V5, multiclass
        clus
vv       PGBD1 MUTATED PGBD1 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             1              58
  CLUS_3             2              38
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PGBD1 MUTATED        2      0      8
  PGBD1 WILD-TYPE    104     54     89
D339V6, multiclass
        clus
vv       PGBD1 MUTATED PGBD1 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PGBD1 MUTATED       10      1      1
  PGBD1 WILD-TYPE    113     94     70
D339V7, multiclass
        clus
vv       PGBD1 MUTATED PGBD1 WILD-TYPE
  CLUS_1            10             113
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PGBD1 MUTATED       11      1      0
  PGBD1 WILD-TYPE    146     62     69
D339V8, multiclass
        clus
vv       PGBD1 MUTATED PGBD1 WILD-TYPE
  CLUS_1            11             146
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PGBD1 MUTATED        0      1      4      2      0      0
  PGBD1 WILD-TYPE     33     18     55     37     16     45
D339V9, multiclass
        clus
vv       PGBD1 MUTATED PGBD1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              18
  CLUS_3             4              55
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PGBD1 MUTATED        3      0      3      0      1      0
  PGBD1 WILD-TYPE     44     39     32     32     22     35
D339V10, multiclass
        clus
vv       PGBD1 MUTATED PGBD1 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             3              32
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(340) Variable = ADAMTSL4 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAMTSL4 MUTATED        0     11      2      1      1
  ADAMTSL4 WILD-TYPE     79    115     25     42     11
D340V1, multiclass
        clus
vv       ADAMTSL4 MUTATED ADAMTSL4 WILD-TYPE
  CLUS_1                0                 79
  CLUS_2               11                115
  CLUS_3                2                 25
  CLUS_4                1                 42
  CLUS_5                1                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTSL4 MUTATED        0      7      3      1
  ADAMTSL4 WILD-TYPE     71     69     31     62
D340V2, multiclass
        clus
vv       ADAMTSL4 MUTATED ADAMTSL4 WILD-TYPE
  CLUS_1                0                 71
  CLUS_2                7                 69
  CLUS_3                3                 31
  CLUS_4                1                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAMTSL4 MUTATED        1      5      4      0      2
  ADAMTSL4 WILD-TYPE     15     57     47     65     53
D340V3, multiclass
        clus
vv       ADAMTSL4 MUTATED ADAMTSL4 WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                5                 57
  CLUS_3                4                 47
  CLUS_4                0                 65
  CLUS_5                2                 53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTSL4 MUTATED        4      7      1      0
  ADAMTSL4 WILD-TYPE     94     37     49     57
D340V4, multiclass
        clus
vv       ADAMTSL4 MUTATED ADAMTSL4 WILD-TYPE
  CLUS_1                4                 94
  CLUS_2                7                 37
  CLUS_3                1                 49
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAMTSL4 MUTATED        6      0      2      4      0
  ADAMTSL4 WILD-TYPE     56     59     38     33     59
D340V5, multiclass
        clus
vv       ADAMTSL4 MUTATED ADAMTSL4 WILD-TYPE
  CLUS_1                6                 56
  CLUS_2                0                 59
  CLUS_3                2                 38
  CLUS_4                4                 33
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ADAMTSL4 MUTATED        1      0     11
  ADAMTSL4 WILD-TYPE    105     54     86
D340V6, multiclass
        clus
vv       ADAMTSL4 MUTATED ADAMTSL4 WILD-TYPE
  CLUS_1                1                105
  CLUS_2                0                 54
  CLUS_3               11                 86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ADAMTSL4 MUTATED       14      1      0
  ADAMTSL4 WILD-TYPE    109     94     71
D340V7, multiclass
        clus
vv       ADAMTSL4 MUTATED ADAMTSL4 WILD-TYPE
  CLUS_1               14                109
  CLUS_2                1                 94
  CLUS_3                0                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ADAMTSL4 MUTATED       13      1      1
  ADAMTSL4 WILD-TYPE    144     62     68
D340V8, multiclass
        clus
vv       ADAMTSL4 MUTATED ADAMTSL4 WILD-TYPE
  CLUS_1               13                144
  CLUS_2                1                 62
  CLUS_3                1                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ADAMTSL4 MUTATED        2      2      4      1      0      1
  ADAMTSL4 WILD-TYPE     31     17     55     38     16     44
D340V9, multiclass
        clus
vv       ADAMTSL4 MUTATED ADAMTSL4 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                2                 17
  CLUS_3                4                 55
  CLUS_4                1                 38
  CLUS_5                0                 16
  CLUS_6                1                 44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ADAMTSL4 MUTATED        4      1      4      0      1      0
  ADAMTSL4 WILD-TYPE     43     38     31     32     22     35
D340V10, multiclass
        clus
vv       ADAMTSL4 MUTATED ADAMTSL4 WILD-TYPE
  CLUS_1                4                 43
  CLUS_2                1                 38
  CLUS_3                4                 31
  CLUS_4                0                 32
  CLUS_5                1                 22
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(341) Variable = HTR1E MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTR1E MUTATED        0      6      0      2      1
  HTR1E WILD-TYPE     79    120     27     41     11
D341V1, multiclass
        clus
vv       HTR1E MUTATED HTR1E WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             2              41
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR1E MUTATED        2      6      0      0
  HTR1E WILD-TYPE     69     70     34     63
D341V2, multiclass
        clus
vv       HTR1E MUTATED HTR1E WILD-TYPE
  CLUS_1             2              69
  CLUS_2             6              70
  CLUS_3             0              34
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTR1E MUTATED        0      4      3      0      2
  HTR1E WILD-TYPE     16     58     48     65     53
D341V3, multiclass
        clus
vv       HTR1E MUTATED HTR1E WILD-TYPE
  CLUS_1             0              16
  CLUS_2             4              58
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR1E MUTATED        3      4      2      0
  HTR1E WILD-TYPE     95     40     48     57
D341V4, multiclass
        clus
vv       HTR1E MUTATED HTR1E WILD-TYPE
  CLUS_1             3              95
  CLUS_2             4              40
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTR1E MUTATED        3      0      2      0      0
  HTR1E WILD-TYPE     59     59     38     37     59
D341V5, multiclass
        clus
vv       HTR1E MUTATED HTR1E WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              59
  CLUS_3             2              38
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTR1E MUTATED        1      0      4
  HTR1E WILD-TYPE    105     54     93
D341V6, multiclass
        clus
vv       HTR1E MUTATED HTR1E WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTR1E MUTATED        7      0      2
  HTR1E WILD-TYPE    116     95     69
D341V7, multiclass
        clus
vv       HTR1E MUTATED HTR1E WILD-TYPE
  CLUS_1             7             116
  CLUS_2             0              95
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTR1E MUTATED        8      0      1
  HTR1E WILD-TYPE    149     63     68
D341V8, multiclass
        clus
vv       HTR1E MUTATED HTR1E WILD-TYPE
  CLUS_1             8             149
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HTR1E MUTATED        1      1      2      3      0      0
  HTR1E WILD-TYPE     32     18     57     36     16     45
D341V9, multiclass
        clus
vv       HTR1E MUTATED HTR1E WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             2              57
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HTR1E MUTATED        2      0      1      3      0      1
  HTR1E WILD-TYPE     45     39     34     29     23     34
D341V10, multiclass
        clus
vv       HTR1E MUTATED HTR1E WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             3              29
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(342) Variable = UGP2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGP2 MUTATED        0      7      0      0      0
  UGP2 WILD-TYPE     79    119     27     43     12
D342V1, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            7            119
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGP2 MUTATED        0      5      0      1
  UGP2 WILD-TYPE     71     71     34     62
D342V2, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            5             71
  CLUS_3            0             34
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGP2 MUTATED        0      4      0      0      2
  UGP2 WILD-TYPE     16     58     51     65     53
D342V3, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            4             58
  CLUS_3            0             51
  CLUS_4            0             65
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGP2 MUTATED        0      3      3      0
  UGP2 WILD-TYPE     98     41     47     57
D342V4, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            0             98
  CLUS_2            3             41
  CLUS_3            3             47
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGP2 MUTATED        5      0      0      0      0
  UGP2 WILD-TYPE     57     59     40     37     59
D342V5, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            5             57
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            0             37
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UGP2 MUTATED        1      0      4
  UGP2 WILD-TYPE    105     54     93
D342V6, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            4             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UGP2 MUTATED        4      2      1
  UGP2 WILD-TYPE    119     93     70
D342V7, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            4            119
  CLUS_2            2             93
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UGP2 MUTATED        5      2      0
  UGP2 WILD-TYPE    152     61     69
D342V8, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            5            152
  CLUS_2            2             61
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UGP2 MUTATED        1      0      2      3      0      0
  UGP2 WILD-TYPE     32     19     57     36     16     45
D342V9, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             19
  CLUS_3            2             57
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UGP2 MUTATED        2      0      2      1      1      0
  UGP2 WILD-TYPE     45     39     33     31     22     35
D342V10, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            2             33
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(343) Variable = PFKP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PFKP MUTATED        1      9      0      2      0
  PFKP WILD-TYPE     78    117     27     41     12
D343V1, multiclass
        clus
vv       PFKP MUTATED PFKP WILD-TYPE
  CLUS_1            1             78
  CLUS_2            9            117
  CLUS_3            0             27
  CLUS_4            2             41
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PFKP MUTATED        1      4      2      0
  PFKP WILD-TYPE     70     72     32     63
D343V2, multiclass
        clus
vv       PFKP MUTATED PFKP WILD-TYPE
  CLUS_1            1             70
  CLUS_2            4             72
  CLUS_3            2             32
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PFKP MUTATED        0      5      3      0      1
  PFKP WILD-TYPE     16     57     48     65     54
D343V3, multiclass
        clus
vv       PFKP MUTATED PFKP WILD-TYPE
  CLUS_1            0             16
  CLUS_2            5             57
  CLUS_3            3             48
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PFKP MUTATED        1      4      4      0
  PFKP WILD-TYPE     97     40     46     57
D343V4, multiclass
        clus
vv       PFKP MUTATED PFKP WILD-TYPE
  CLUS_1            1             97
  CLUS_2            4             40
  CLUS_3            4             46
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PFKP MUTATED        3      1      2      4      1
  PFKP WILD-TYPE     59     58     38     33     58
D343V5, multiclass
        clus
vv       PFKP MUTATED PFKP WILD-TYPE
  CLUS_1            3             59
  CLUS_2            1             58
  CLUS_3            2             38
  CLUS_4            4             33
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PFKP MUTATED        4      1      6
  PFKP WILD-TYPE    102     53     91
D343V6, multiclass
        clus
vv       PFKP MUTATED PFKP WILD-TYPE
  CLUS_1            4            102
  CLUS_2            1             53
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PFKP MUTATED        9      2      1
  PFKP WILD-TYPE    114     93     70
D343V7, multiclass
        clus
vv       PFKP MUTATED PFKP WILD-TYPE
  CLUS_1            9            114
  CLUS_2            2             93
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PFKP MUTATED       11      0      1
  PFKP WILD-TYPE    146     63     68
D343V8, multiclass
        clus
vv       PFKP MUTATED PFKP WILD-TYPE
  CLUS_1           11            146
  CLUS_2            0             63
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PFKP MUTATED        1      1      0      3      0      0
  PFKP WILD-TYPE     32     18     59     36     16     45
D343V9, multiclass
        clus
vv       PFKP MUTATED PFKP WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            0             59
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PFKP MUTATED        1      0      0      0      3      1
  PFKP WILD-TYPE     46     39     35     32     20     34
D343V10, multiclass
        clus
vv       PFKP MUTATED PFKP WILD-TYPE
  CLUS_1            1             46
  CLUS_2            0             39
  CLUS_3            0             35
  CLUS_4            0             32
  CLUS_5            3             20
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(344) Variable = EDNRB MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EDNRB MUTATED        3     14      3      4      1
  EDNRB WILD-TYPE     76    112     24     39     11
D344V1, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1             3              76
  CLUS_2            14             112
  CLUS_3             3              24
  CLUS_4             4              39
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EDNRB MUTATED        2     12      1      1
  EDNRB WILD-TYPE     69     64     33     62
D344V2, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1             2              69
  CLUS_2            12              64
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EDNRB MUTATED        3      7      6      2      6
  EDNRB WILD-TYPE     13     55     45     63     49
D344V3, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1             3              13
  CLUS_2             7              55
  CLUS_3             6              45
  CLUS_4             2              63
  CLUS_5             6              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EDNRB MUTATED        7     14      2      1
  EDNRB WILD-TYPE     91     30     48     56
D344V4, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1             7              91
  CLUS_2            14              30
  CLUS_3             2              48
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EDNRB MUTATED        8      0      3      7      3
  EDNRB WILD-TYPE     54     59     37     30     56
D344V5, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1             8              54
  CLUS_2             0              59
  CLUS_3             3              37
  CLUS_4             7              30
  CLUS_5             3              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EDNRB MUTATED        6      1     14
  EDNRB WILD-TYPE    100     53     83
D344V6, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1             6             100
  CLUS_2             1              53
  CLUS_3            14              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EDNRB MUTATED       19      2      4
  EDNRB WILD-TYPE    104     93     67
D344V7, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1            19             104
  CLUS_2             2              93
  CLUS_3             4              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EDNRB MUTATED       20      1      4
  EDNRB WILD-TYPE    137     62     65
D344V8, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1            20             137
  CLUS_2             1              62
  CLUS_3             4              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EDNRB MUTATED        1      4      6      2      1      1
  EDNRB WILD-TYPE     32     15     53     37     15     44
D344V9, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1             1              32
  CLUS_2             4              15
  CLUS_3             6              53
  CLUS_4             2              37
  CLUS_5             1              15
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EDNRB MUTATED        7      2      3      2      1      0
  EDNRB WILD-TYPE     40     37     32     30     22     35
D344V10, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1             7              40
  CLUS_2             2              37
  CLUS_3             3              32
  CLUS_4             2              30
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(345) Variable = ISG20L2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ISG20L2 MUTATED        0      7      0      0      0
  ISG20L2 WILD-TYPE     79    119     27     43     12
D345V1, multiclass
        clus
vv       ISG20L2 MUTATED ISG20L2 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               7               119
  CLUS_3               0                27
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ISG20L2 MUTATED        1      4      1      1
  ISG20L2 WILD-TYPE     70     72     33     62
D345V2, multiclass
        clus
vv       ISG20L2 MUTATED ISG20L2 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               4                72
  CLUS_3               1                33
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ISG20L2 MUTATED        1      1      3      0      1
  ISG20L2 WILD-TYPE     15     61     48     65     54
D345V3, multiclass
        clus
vv       ISG20L2 MUTATED ISG20L2 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               1                61
  CLUS_3               3                48
  CLUS_4               0                65
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ISG20L2 MUTATED        3      2      1      0
  ISG20L2 WILD-TYPE     95     42     49     57
D345V4, multiclass
        clus
vv       ISG20L2 MUTATED ISG20L2 WILD-TYPE
  CLUS_1               3                95
  CLUS_2               2                42
  CLUS_3               1                49
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ISG20L2 MUTATED        4      0      2      0      0
  ISG20L2 WILD-TYPE     58     59     38     37     59
D345V5, multiclass
        clus
vv       ISG20L2 MUTATED ISG20L2 WILD-TYPE
  CLUS_1               4                58
  CLUS_2               0                59
  CLUS_3               2                38
  CLUS_4               0                37
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ISG20L2 MUTATED        1      0      5
  ISG20L2 WILD-TYPE    105     54     92
D345V6, multiclass
        clus
vv       ISG20L2 MUTATED ISG20L2 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               0                54
  CLUS_3               5                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ISG20L2 MUTATED        7      0      0
  ISG20L2 WILD-TYPE    116     95     71
D345V7, multiclass
        clus
vv       ISG20L2 MUTATED ISG20L2 WILD-TYPE
  CLUS_1               7               116
  CLUS_2               0                95
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ISG20L2 MUTATED        7      0      0
  ISG20L2 WILD-TYPE    150     63     69
D345V8, multiclass
        clus
vv       ISG20L2 MUTATED ISG20L2 WILD-TYPE
  CLUS_1               7               150
  CLUS_2               0                63
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ISG20L2 MUTATED        1      1      3      2      0      0
  ISG20L2 WILD-TYPE     32     18     56     37     16     45
D345V9, multiclass
        clus
vv       ISG20L2 MUTATED ISG20L2 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                18
  CLUS_3               3                56
  CLUS_4               2                37
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ISG20L2 MUTATED        2      0      3      1      1      0
  ISG20L2 WILD-TYPE     45     39     32     31     22     35
D345V10, multiclass
        clus
vv       ISG20L2 MUTATED ISG20L2 WILD-TYPE
  CLUS_1               2                45
  CLUS_2               0                39
  CLUS_3               3                32
  CLUS_4               1                31
  CLUS_5               1                22
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(346) Variable = MAMSTR MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAMSTR MUTATED        0      4      0      0      0
  MAMSTR WILD-TYPE     79    122     27     43     12
D346V1, multiclass
        clus
vv       MAMSTR MUTATED MAMSTR WILD-TYPE
  CLUS_1              0               79
  CLUS_2              4              122
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAMSTR MUTATED        1      1      1      0
  MAMSTR WILD-TYPE     70     75     33     63
D346V2, multiclass
        clus
vv       MAMSTR MUTATED MAMSTR WILD-TYPE
  CLUS_1              1               70
  CLUS_2              1               75
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAMSTR MUTATED        0      2      1      0      1
  MAMSTR WILD-TYPE     16     60     50     65     54
D346V3, multiclass
        clus
vv       MAMSTR MUTATED MAMSTR WILD-TYPE
  CLUS_1              0               16
  CLUS_2              2               60
  CLUS_3              1               50
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAMSTR MUTATED        0      3      1      0
  MAMSTR WILD-TYPE     98     41     49     57
D346V4, multiclass
        clus
vv       MAMSTR MUTATED MAMSTR WILD-TYPE
  CLUS_1              0               98
  CLUS_2              3               41
  CLUS_3              1               49
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAMSTR MUTATED        2      0      1      0      0
  MAMSTR WILD-TYPE     60     59     39     37     59
D346V5, multiclass
        clus
vv       MAMSTR MUTATED MAMSTR WILD-TYPE
  CLUS_1              2               60
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              0               37
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAMSTR MUTATED        0      0      3
  MAMSTR WILD-TYPE    106     54     94
D346V6, multiclass
        clus
vv       MAMSTR MUTATED MAMSTR WILD-TYPE
  CLUS_1              0              106
  CLUS_2              0               54
  CLUS_3              3               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAMSTR MUTATED        4      0      0
  MAMSTR WILD-TYPE    119     95     71
D346V7, multiclass
        clus
vv       MAMSTR MUTATED MAMSTR WILD-TYPE
  CLUS_1              4              119
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAMSTR MUTATED        4      0      0
  MAMSTR WILD-TYPE    153     63     69
D346V8, multiclass
        clus
vv       MAMSTR MUTATED MAMSTR WILD-TYPE
  CLUS_1              4              153
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAMSTR MUTATED        0      1      2      0      0      0
  MAMSTR WILD-TYPE     33     18     57     39     16     45
D346V9, multiclass
        clus
vv       MAMSTR MUTATED MAMSTR WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAMSTR MUTATED        2      0      1      0      0      0
  MAMSTR WILD-TYPE     45     39     34     32     23     35
D346V10, multiclass
        clus
vv       MAMSTR MUTATED MAMSTR WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(347) Variable = UHRF1BP1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UHRF1BP1 MUTATED        0     14      0      0      1
  UHRF1BP1 WILD-TYPE     79    112     27     43     11
D347V1, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                0                 79
  CLUS_2               14                112
  CLUS_3                0                 27
  CLUS_4                0                 43
  CLUS_5                1                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UHRF1BP1 MUTATED        0      9      2      2
  UHRF1BP1 WILD-TYPE     71     67     32     61
D347V2, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                0                 71
  CLUS_2                9                 67
  CLUS_3                2                 32
  CLUS_4                2                 61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UHRF1BP1 MUTATED        0      6      2      1      3
  UHRF1BP1 WILD-TYPE     16     56     49     64     52
D347V3, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                6                 56
  CLUS_3                2                 49
  CLUS_4                1                 64
  CLUS_5                3                 52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UHRF1BP1 MUTATED        0      4      6      2
  UHRF1BP1 WILD-TYPE     98     40     44     55
D347V4, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                0                 98
  CLUS_2                4                 40
  CLUS_3                6                 44
  CLUS_4                2                 55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UHRF1BP1 MUTATED        7      0      3      3      0
  UHRF1BP1 WILD-TYPE     55     59     37     34     59
D347V5, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                7                 55
  CLUS_2                0                 59
  CLUS_3                3                 37
  CLUS_4                3                 34
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  UHRF1BP1 MUTATED        5      0      8
  UHRF1BP1 WILD-TYPE    101     54     89
D347V6, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                5                101
  CLUS_2                0                 54
  CLUS_3                8                 89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  UHRF1BP1 MUTATED       12      2      1
  UHRF1BP1 WILD-TYPE    111     93     70
D347V7, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1               12                111
  CLUS_2                2                 93
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  UHRF1BP1 MUTATED       13      2      0
  UHRF1BP1 WILD-TYPE    144     61     69
D347V8, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1               13                144
  CLUS_2                2                 61
  CLUS_3                0                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UHRF1BP1 MUTATED        1      3      8      0      0      0
  UHRF1BP1 WILD-TYPE     32     16     51     39     16     45
D347V9, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                3                 16
  CLUS_3                8                 51
  CLUS_4                0                 39
  CLUS_5                0                 16
  CLUS_6                0                 45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UHRF1BP1 MUTATED        3      0      7      1      1      0
  UHRF1BP1 WILD-TYPE     44     39     28     31     22     35
D347V10, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                3                 44
  CLUS_2                0                 39
  CLUS_3                7                 28
  CLUS_4                1                 31
  CLUS_5                1                 22
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(348) Variable = FAM70B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM70B MUTATED        0      9      2      1      1
  FAM70B WILD-TYPE     79    117     25     42     11
D348V1, multiclass
        clus
vv       FAM70B MUTATED FAM70B WILD-TYPE
  CLUS_1              0               79
  CLUS_2              9              117
  CLUS_3              2               25
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM70B MUTATED        0      8      0      1
  FAM70B WILD-TYPE     71     68     34     62
D348V2, multiclass
        clus
vv       FAM70B MUTATED FAM70B WILD-TYPE
  CLUS_1              0               71
  CLUS_2              8               68
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM70B MUTATED        2      4      1      1      3
  FAM70B WILD-TYPE     14     58     50     64     52
D348V3, multiclass
        clus
vv       FAM70B MUTATED FAM70B WILD-TYPE
  CLUS_1              2               14
  CLUS_2              4               58
  CLUS_3              1               50
  CLUS_4              1               64
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM70B MUTATED        3      5      2      1
  FAM70B WILD-TYPE     95     39     48     56
D348V4, multiclass
        clus
vv       FAM70B MUTATED FAM70B WILD-TYPE
  CLUS_1              3               95
  CLUS_2              5               39
  CLUS_3              2               48
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM70B MUTATED        5      1      2      4      0
  FAM70B WILD-TYPE     57     58     38     33     59
D348V5, multiclass
        clus
vv       FAM70B MUTATED FAM70B WILD-TYPE
  CLUS_1              5               57
  CLUS_2              1               58
  CLUS_3              2               38
  CLUS_4              4               33
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM70B MUTATED        1      1     10
  FAM70B WILD-TYPE    105     53     87
D348V6, multiclass
        clus
vv       FAM70B MUTATED FAM70B WILD-TYPE
  CLUS_1              1              105
  CLUS_2              1               53
  CLUS_3             10               87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM70B MUTATED       11      1      1
  FAM70B WILD-TYPE    112     94     70
D348V7, multiclass
        clus
vv       FAM70B MUTATED FAM70B WILD-TYPE
  CLUS_1             11              112
  CLUS_2              1               94
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM70B MUTATED       12      1      0
  FAM70B WILD-TYPE    145     62     69
D348V8, multiclass
        clus
vv       FAM70B MUTATED FAM70B WILD-TYPE
  CLUS_1             12              145
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM70B MUTATED        1      2      3      1      0      0
  FAM70B WILD-TYPE     32     17     56     38     16     45
D348V9, multiclass
        clus
vv       FAM70B MUTATED FAM70B WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               17
  CLUS_3              3               56
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM70B MUTATED        4      0      2      1      0      0
  FAM70B WILD-TYPE     43     39     33     31     23     35
D348V10, multiclass
        clus
vv       FAM70B MUTATED FAM70B WILD-TYPE
  CLUS_1              4               43
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(349) Variable = SEC24C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEC24C MUTATED        1      4      1      1      2
  SEC24C WILD-TYPE     78    122     26     42     10
D349V1, multiclass
        clus
vv       SEC24C MUTATED SEC24C WILD-TYPE
  CLUS_1              1               78
  CLUS_2              4              122
  CLUS_3              1               26
  CLUS_4              1               42
  CLUS_5              2               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC24C MUTATED        1      7      0      1
  SEC24C WILD-TYPE     70     69     34     62
D349V2, multiclass
        clus
vv       SEC24C MUTATED SEC24C WILD-TYPE
  CLUS_1              1               70
  CLUS_2              7               69
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEC24C MUTATED        1      1      2      0      2
  SEC24C WILD-TYPE     15     61     49     65     53
D349V3, multiclass
        clus
vv       SEC24C MUTATED SEC24C WILD-TYPE
  CLUS_1              1               15
  CLUS_2              1               61
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC24C MUTATED        3      3      0      0
  SEC24C WILD-TYPE     95     41     50     57
D349V4, multiclass
        clus
vv       SEC24C MUTATED SEC24C WILD-TYPE
  CLUS_1              3               95
  CLUS_2              3               41
  CLUS_3              0               50
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEC24C MUTATED        3      0      2      3      0
  SEC24C WILD-TYPE     59     59     38     34     59
D349V5, multiclass
        clus
vv       SEC24C MUTATED SEC24C WILD-TYPE
  CLUS_1              3               59
  CLUS_2              0               59
  CLUS_3              2               38
  CLUS_4              3               34
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEC24C MUTATED        0      0      8
  SEC24C WILD-TYPE    106     54     89
D349V6, multiclass
        clus
vv       SEC24C MUTATED SEC24C WILD-TYPE
  CLUS_1              0              106
  CLUS_2              0               54
  CLUS_3              8               89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEC24C MUTATED        9      1      0
  SEC24C WILD-TYPE    114     94     71
D349V7, multiclass
        clus
vv       SEC24C MUTATED SEC24C WILD-TYPE
  CLUS_1              9              114
  CLUS_2              1               94
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEC24C MUTATED        9      1      0
  SEC24C WILD-TYPE    148     62     69
D349V8, multiclass
        clus
vv       SEC24C MUTATED SEC24C WILD-TYPE
  CLUS_1              9              148
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SEC24C MUTATED        1      1      4      0      0      0
  SEC24C WILD-TYPE     32     18     55     39     16     45
D349V9, multiclass
        clus
vv       SEC24C MUTATED SEC24C WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              4               55
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SEC24C MUTATED        3      0      3      0      0      0
  SEC24C WILD-TYPE     44     39     32     32     23     35
D349V10, multiclass
        clus
vv       SEC24C MUTATED SEC24C WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(350) Variable = CEP57 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP57 MUTATED        0      6      0      0      1
  CEP57 WILD-TYPE     79    120     27     43     11
D350V1, multiclass
        clus
vv       CEP57 MUTATED CEP57 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP57 MUTATED        0      3      1      1
  CEP57 WILD-TYPE     71     73     33     62
D350V2, multiclass
        clus
vv       CEP57 MUTATED CEP57 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             3              73
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP57 MUTATED        1      4      0      0      2
  CEP57 WILD-TYPE     15     58     51     65     53
D350V3, multiclass
        clus
vv       CEP57 MUTATED CEP57 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             4              58
  CLUS_3             0              51
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP57 MUTATED        1      3      3      0
  CEP57 WILD-TYPE     97     41     47     57
D350V4, multiclass
        clus
vv       CEP57 MUTATED CEP57 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             3              41
  CLUS_3             3              47
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP57 MUTATED        3      0      0      3      0
  CEP57 WILD-TYPE     59     59     40     34     59
D350V5, multiclass
        clus
vv       CEP57 MUTATED CEP57 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CEP57 MUTATED        1      0      5
  CEP57 WILD-TYPE    105     54     92
D350V6, multiclass
        clus
vv       CEP57 MUTATED CEP57 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CEP57 MUTATED        6      0      1
  CEP57 WILD-TYPE    117     95     70
D350V7, multiclass
        clus
vv       CEP57 MUTATED CEP57 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             0              95
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CEP57 MUTATED        7      0      0
  CEP57 WILD-TYPE    150     63     69
D350V8, multiclass
        clus
vv       CEP57 MUTATED CEP57 WILD-TYPE
  CLUS_1             7             150
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CEP57 MUTATED        0      0      3      1      0      0
  CEP57 WILD-TYPE     33     19     56     38     16     45
D350V9, multiclass
        clus
vv       CEP57 MUTATED CEP57 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              19
  CLUS_3             3              56
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CEP57 MUTATED        1      0      2      0      1      0
  CEP57 WILD-TYPE     46     39     33     32     22     35
D350V10, multiclass
        clus
vv       CEP57 MUTATED CEP57 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(351) Variable = MAP7D3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP7D3 MUTATED        1     14      0      1      0
  MAP7D3 WILD-TYPE     78    112     27     42     12
D351V1, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              1               78
  CLUS_2             14              112
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D3 MUTATED        2      7      3      0
  MAP7D3 WILD-TYPE     69     69     31     63
D351V2, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              7               69
  CLUS_3              3               31
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP7D3 MUTATED        0      4      2      2      6
  MAP7D3 WILD-TYPE     16     58     49     63     49
D351V3, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              4               58
  CLUS_3              2               49
  CLUS_4              2               63
  CLUS_5              6               49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D3 MUTATED        0      8      3      3
  MAP7D3 WILD-TYPE     98     36     47     54
D351V4, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              8               36
  CLUS_3              3               47
  CLUS_4              3               54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP7D3 MUTATED        9      2      1      2      1
  MAP7D3 WILD-TYPE     53     57     39     35     58
D351V5, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              9               53
  CLUS_2              2               57
  CLUS_3              1               39
  CLUS_4              2               35
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP7D3 MUTATED        5      0     10
  MAP7D3 WILD-TYPE    101     54     87
D351V6, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              5              101
  CLUS_2              0               54
  CLUS_3             10               87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP7D3 MUTATED       12      1      3
  MAP7D3 WILD-TYPE    111     94     68
D351V7, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1             12              111
  CLUS_2              1               94
  CLUS_3              3               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP7D3 MUTATED       15      0      1
  MAP7D3 WILD-TYPE    142     63     68
D351V8, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1             15              142
  CLUS_2              0               63
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAP7D3 MUTATED        3      1      2      3      1      0
  MAP7D3 WILD-TYPE     30     18     57     36     15     45
D351V9, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              3               36
  CLUS_5              1               15
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAP7D3 MUTATED        4      0      1      2      2      1
  MAP7D3 WILD-TYPE     43     39     34     30     21     34
D351V10, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              4               43
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              2               30
  CLUS_5              2               21
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(352) Variable = CCDC148 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC148 MUTATED        0      3      1      1      0
  CCDC148 WILD-TYPE     79    123     26     42     12
D352V1, multiclass
        clus
vv       CCDC148 MUTATED CCDC148 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               3               123
  CLUS_3               1                26
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC148 MUTATED        0      4      0      1
  CCDC148 WILD-TYPE     71     72     34     62
D352V2, multiclass
        clus
vv       CCDC148 MUTATED CCDC148 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               4                72
  CLUS_3               0                34
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC148 MUTATED        1      0      1      1      1
  CCDC148 WILD-TYPE     15     62     50     64     54
D352V3, multiclass
        clus
vv       CCDC148 MUTATED CCDC148 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               0                62
  CLUS_3               1                50
  CLUS_4               1                64
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC148 MUTATED        1      2      0      1
  CCDC148 WILD-TYPE     97     42     50     56
D352V4, multiclass
        clus
vv       CCDC148 MUTATED CCDC148 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               2                42
  CLUS_3               0                50
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC148 MUTATED        2      0      1      1      0
  CCDC148 WILD-TYPE     60     59     39     36     59
D352V5, multiclass
        clus
vv       CCDC148 MUTATED CCDC148 WILD-TYPE
  CLUS_1               2                60
  CLUS_2               0                59
  CLUS_3               1                39
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC148 MUTATED        0      1      3
  CCDC148 WILD-TYPE    106     53     94
D352V6, multiclass
        clus
vv       CCDC148 MUTATED CCDC148 WILD-TYPE
  CLUS_1               0               106
  CLUS_2               1                53
  CLUS_3               3                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC148 MUTATED        5      0      0
  CCDC148 WILD-TYPE    118     95     71
D352V7, multiclass
        clus
vv       CCDC148 MUTATED CCDC148 WILD-TYPE
  CLUS_1               5               118
  CLUS_2               0                95
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC148 MUTATED        4      1      0
  CCDC148 WILD-TYPE    153     62     69
D352V8, multiclass
        clus
vv       CCDC148 MUTATED CCDC148 WILD-TYPE
  CLUS_1               4               153
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC148 MUTATED        1      1      2      0      0      0
  CCDC148 WILD-TYPE     32     18     57     39     16     45
D352V9, multiclass
        clus
vv       CCDC148 MUTATED CCDC148 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                18
  CLUS_3               2                57
  CLUS_4               0                39
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC148 MUTATED        2      0      2      0      0      0
  CCDC148 WILD-TYPE     45     39     33     32     23     35
D352V10, multiclass
        clus
vv       CCDC148 MUTATED CCDC148 WILD-TYPE
  CLUS_1               2                45
  CLUS_2               0                39
  CLUS_3               2                33
  CLUS_4               0                32
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(353) Variable = HAUS6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HAUS6 MUTATED        1      9      1      0      0
  HAUS6 WILD-TYPE     78    117     26     43     12
D353V1, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             9             117
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS6 MUTATED        1      7      0      1
  HAUS6 WILD-TYPE     70     69     34     62
D353V2, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             7              69
  CLUS_3             0              34
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HAUS6 MUTATED        2      3      2      0      4
  HAUS6 WILD-TYPE     14     59     49     65     51
D353V3, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             3              59
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS6 MUTATED        4      7      0      0
  HAUS6 WILD-TYPE     94     37     50     57
D353V4, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             4              94
  CLUS_2             7              37
  CLUS_3             0              50
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HAUS6 MUTATED        4      0      2      2      1
  HAUS6 WILD-TYPE     58     59     38     35     58
D353V5, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             2              38
  CLUS_4             2              35
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HAUS6 MUTATED        2      0      7
  HAUS6 WILD-TYPE    104     54     90
D353V6, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             7              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HAUS6 MUTATED        9      0      2
  HAUS6 WILD-TYPE    114     95     69
D353V7, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             9             114
  CLUS_2             0              95
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HAUS6 MUTATED       10      0      1
  HAUS6 WILD-TYPE    147     63     68
D353V8, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1            10             147
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HAUS6 MUTATED        3      0      4      2      0      0
  HAUS6 WILD-TYPE     30     19     55     37     16     45
D353V9, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              19
  CLUS_3             4              55
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HAUS6 MUTATED        2      0      4      2      0      1
  HAUS6 WILD-TYPE     45     39     31     30     23     34
D353V10, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             4              31
  CLUS_4             2              30
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(354) Variable = TMEM55A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM55A MUTATED        0      2      0      1      0
  TMEM55A WILD-TYPE     79    124     27     42     12
D354V1, multiclass
        clus
vv       TMEM55A MUTATED TMEM55A WILD-TYPE
  CLUS_1               0                79
  CLUS_2               2               124
  CLUS_3               0                27
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM55A MUTATED        0      2      0      0
  TMEM55A WILD-TYPE     71     74     34     63
D354V2, multiclass
[1] "Remove cluster labels:" "TMEM55A MUTATED"       
clus
  TMEM55A MUTATED TMEM55A WILD-TYPE 
                2               242 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6453 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-7707        TCGA-BR-7715        TCGA-BR-7716        TCGA-BR-7717 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-7722        TCGA-BR-7723        TCGA-BR-7851        TCGA-BR-7901 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-7957        TCGA-BR-7958        TCGA-BR-7959        TCGA-BR-8058 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8059        TCGA-BR-8077        TCGA-BR-8078        TCGA-BR-8080 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8081        TCGA-BR-8284        TCGA-BR-8286        TCGA-BR-8289 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8296        TCGA-BR-8297 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8360        TCGA-BR-8363        TCGA-BR-8364        TCGA-BR-8365 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8366        TCGA-BR-8367        TCGA-BR-8368        TCGA-BR-8369 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8370        TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8373 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8380        TCGA-BR-8381        TCGA-BR-8382        TCGA-BR-8384 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8483        TCGA-BR-8484        TCGA-BR-8485        TCGA-BR-8486 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8487        TCGA-BR-8588        TCGA-BR-8589        TCGA-BR-8590 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676        TCGA-BR-8677 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8680        TCGA-BR-8682 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8683        TCGA-BR-8686        TCGA-BR-8687        TCGA-BR-8690 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A44T        TCGA-BR-A44U        TCGA-BR-A452        TCGA-BR-A453 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4J2        TCGA-BR-A4J4        TCGA-BR-A4J6        TCGA-BR-A4J7 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4PE        TCGA-BR-A4PF 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4QI        TCGA-BR-A4QL        TCGA-BR-A4QM        TCGA-CD-5798 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-5799        TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-5803        TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-8525        TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8528 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-8529        TCGA-CD-8530        TCGA-CD-8531        TCGA-CD-8532 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-8534        TCGA-CD-8535        TCGA-CD-8536        TCGA-CD-A486 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-A487        TCGA-CD-A489        TCGA-CD-A48A        TCGA-CD-A48C 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-A4MG        TCGA-CD-A4MH        TCGA-CD-A4MJ        TCGA-CG-4437 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-4441        TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5720        TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5724        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-D7-8570        TCGA-D7-8572 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-8573        TCGA-D7-8574        TCGA-D7-8575        TCGA-D7-8576 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-8578        TCGA-D7-8579        TCGA-D7-A4YT        TCGA-D7-A4YU 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-A4YV        TCGA-D7-A4YX        TCGA-D7-A4YY        TCGA-D7-A4Z0 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-EQ-5647        TCGA-EQ-8122        TCGA-EQ-A4SO        TCGA-F1-6177 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-F1-6874        TCGA-F1-6875        TCGA-F1-A448        TCGA-FP-7735 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-FP-7829        TCGA-FP-7916        TCGA-FP-7998        TCGA-FP-8099 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-FP-8209        TCGA-FP-8210        TCGA-FP-8211        TCGA-FP-8631 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-FP-A4BE        TCGA-FP-A4BF        TCGA-HF-7132        TCGA-HF-7133 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HF-7136        TCGA-HJ-7597        TCGA-HU-8243        TCGA-HU-8245 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-8249        TCGA-HU-8602        TCGA-HU-8604        TCGA-HU-8608 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-8610        TCGA-HU-A4G2        TCGA-HU-A4G3        TCGA-HU-A4G6 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4G8        TCGA-HU-A4G9        TCGA-HU-A4GC        TCGA-HU-A4GD 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GN        TCGA-HU-A4GP 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4GQ        TCGA-HU-A4GT        TCGA-HU-A4GU        TCGA-HU-A4GX 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4GY        TCGA-HU-A4H0        TCGA-HU-A4H2        TCGA-HU-A4H3 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4H6        TCGA-HU-A4H8 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4HD        TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-IN-8663        TCGA-IP-7968 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM55A MUTATED        0      1      1      0      1
  TMEM55A WILD-TYPE     16     61     50     65     54
D354V3, multiclass
        clus
vv       TMEM55A MUTATED TMEM55A WILD-TYPE
  CLUS_1               0                16
  CLUS_2               1                61
  CLUS_3               1                50
  CLUS_4               0                65
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM55A MUTATED        1      2      0      0
  TMEM55A WILD-TYPE     97     42     50     57
D354V4, multiclass
        clus
vv       TMEM55A MUTATED TMEM55A WILD-TYPE
  CLUS_1               1                97
  CLUS_2               2                42
  CLUS_3               0                50
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM55A MUTATED        2      1      0      0      0
  TMEM55A WILD-TYPE     60     58     40     37     59
D354V5, multiclass
        clus
vv       TMEM55A MUTATED TMEM55A WILD-TYPE
  CLUS_1               2                60
  CLUS_2               1                58
  CLUS_3               0                40
  CLUS_4               0                37
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM55A MUTATED        0      1      2
  TMEM55A WILD-TYPE    106     53     95
D354V6, multiclass
        clus
vv       TMEM55A MUTATED TMEM55A WILD-TYPE
  CLUS_1               0               106
  CLUS_2               1                53
  CLUS_3               2                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM55A MUTATED        2      1      0
  TMEM55A WILD-TYPE    121     94     71
D354V7, multiclass
        clus
vv       TMEM55A MUTATED TMEM55A WILD-TYPE
  CLUS_1               2               121
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM55A MUTATED        2      1      0
  TMEM55A WILD-TYPE    155     62     69
D354V8, multiclass
        clus
vv       TMEM55A MUTATED TMEM55A WILD-TYPE
  CLUS_1               2               155
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM55A MUTATED        0      0      0      1      0      1
  TMEM55A WILD-TYPE     33     19     59     38     16     44
D354V9, multiclass
[1] "Remove cluster labels:" "TMEM55A MUTATED"       
clus
  TMEM55A MUTATED TMEM55A WILD-TYPE 
                2               209 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6453 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-7707        TCGA-BR-7715        TCGA-BR-7717        TCGA-BR-7723 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7958 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8077 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8078        TCGA-BR-8080        TCGA-BR-8284        TCGA-BR-8286 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8289        TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8296 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8297        TCGA-BR-8360        TCGA-BR-8363        TCGA-BR-8364 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8365        TCGA-BR-8368        TCGA-BR-8369        TCGA-BR-8370 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8373        TCGA-BR-8380 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8381        TCGA-BR-8382        TCGA-BR-8384        TCGA-BR-8483 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8485        TCGA-BR-8486        TCGA-BR-8487        TCGA-BR-8588 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8680 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8687        TCGA-BR-8690 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A44T        TCGA-BR-A452        TCGA-BR-A453        TCGA-BR-A4CQ 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU        TCGA-BR-A4IV 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1        TCGA-BR-A4J6 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4QI 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4QL        TCGA-BR-A4QM        TCGA-CD-5798        TCGA-CD-5799 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8525 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8529        TCGA-CD-8530 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-8531        TCGA-CD-8532        TCGA-CD-8534        TCGA-CD-8535 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487        TCGA-CD-A489 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-A48C        TCGA-CD-A4MG        TCGA-CD-A4MH        TCGA-CG-4437 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-4441        TCGA-CG-4449        TCGA-CG-5717        TCGA-CG-5718 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721        TCGA-CG-5722 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5726        TCGA-CG-5727 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5728        TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5734        TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822        TCGA-D7-8570 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-8572        TCGA-D7-8574        TCGA-D7-8575        TCGA-D7-8576 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-8578        TCGA-D7-8579        TCGA-D7-A4YT        TCGA-D7-A4YU 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-A4YV        TCGA-D7-A4YY        TCGA-D7-A4Z0        TCGA-EQ-5647 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-EQ-8122        TCGA-F1-6177        TCGA-F1-6874        TCGA-F1-6875 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-F1-A448        TCGA-FP-7735        TCGA-FP-7829        TCGA-FP-7998 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-FP-8099        TCGA-FP-8209        TCGA-FP-8210        TCGA-FP-8211 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-FP-8631        TCGA-FP-A4BE        TCGA-HF-7132        TCGA-HF-7136 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-8243        TCGA-HU-8602        TCGA-HU-8604        TCGA-HU-8608 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4G3        TCGA-HU-A4G8        TCGA-HU-A4GC        TCGA-HU-A4GD 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GN        TCGA-HU-A4GQ 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4GT        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H2 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4H6        TCGA-HU-A4H8 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-IP-7968 
"TMEM55A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM55A MUTATED        1      1      0      0      0      0
  TMEM55A WILD-TYPE     46     38     35     32     23     35
D354V10, multiclass
[1] "Remove cluster labels:" "TMEM55A MUTATED"       
clus
  TMEM55A MUTATED TMEM55A WILD-TYPE 
                2               209 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6453 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-7707        TCGA-BR-7715        TCGA-BR-7717        TCGA-BR-7723 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7958 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8077 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8078        TCGA-BR-8080        TCGA-BR-8284        TCGA-BR-8286 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8289        TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8296 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8297        TCGA-BR-8360        TCGA-BR-8363        TCGA-BR-8364 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8365        TCGA-BR-8368        TCGA-BR-8369        TCGA-BR-8370 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8373        TCGA-BR-8380 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8381        TCGA-BR-8382        TCGA-BR-8384        TCGA-BR-8483 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8485        TCGA-BR-8486        TCGA-BR-8487        TCGA-BR-8588 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8680 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8687        TCGA-BR-8690 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A44T        TCGA-BR-A452        TCGA-BR-A453        TCGA-BR-A4CQ 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU        TCGA-BR-A4IV 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1        TCGA-BR-A4J6 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4QI 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4QL        TCGA-BR-A4QM        TCGA-CD-5798        TCGA-CD-5799 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8525 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8529        TCGA-CD-8530 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-8531        TCGA-CD-8532        TCGA-CD-8534        TCGA-CD-8535 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487        TCGA-CD-A489 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-A48C        TCGA-CD-A4MG        TCGA-CD-A4MH        TCGA-CG-4437 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-4441        TCGA-CG-4449        TCGA-CG-5717        TCGA-CG-5718 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721        TCGA-CG-5722 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5726        TCGA-CG-5727 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5728        TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5734        TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822        TCGA-D7-8570 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-8572        TCGA-D7-8574        TCGA-D7-8575        TCGA-D7-8576 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-8578        TCGA-D7-8579        TCGA-D7-A4YT        TCGA-D7-A4YU 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-A4YV        TCGA-D7-A4YY        TCGA-D7-A4Z0        TCGA-EQ-5647 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-EQ-8122        TCGA-F1-6177        TCGA-F1-6874        TCGA-F1-6875 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-F1-A448        TCGA-FP-7735        TCGA-FP-7829        TCGA-FP-7998 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-FP-8099        TCGA-FP-8209        TCGA-FP-8210        TCGA-FP-8211 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-FP-8631        TCGA-FP-A4BE        TCGA-HF-7132        TCGA-HF-7136 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-8243        TCGA-HU-8602        TCGA-HU-8604        TCGA-HU-8608 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4G3        TCGA-HU-A4G8        TCGA-HU-A4GC        TCGA-HU-A4GD 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GN        TCGA-HU-A4GQ 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4GT        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H2 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4H6        TCGA-HU-A4H8 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-IP-7968 
"TMEM55A WILD-TYPE" 

Clustering(355) Variable = GNAZ MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNAZ MUTATED        0     11      0      1      2
  GNAZ WILD-TYPE     79    115     27     42     10
D355V1, multiclass
        clus
vv       GNAZ MUTATED GNAZ WILD-TYPE
  CLUS_1            0             79
  CLUS_2           11            115
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            2             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNAZ MUTATED        2      6      3      2
  GNAZ WILD-TYPE     69     70     31     61
D355V2, multiclass
        clus
vv       GNAZ MUTATED GNAZ WILD-TYPE
  CLUS_1            2             69
  CLUS_2            6             70
  CLUS_3            3             31
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNAZ MUTATED        1      3      3      1      3
  GNAZ WILD-TYPE     15     59     48     64     52
D355V3, multiclass
        clus
vv       GNAZ MUTATED GNAZ WILD-TYPE
  CLUS_1            1             15
  CLUS_2            3             59
  CLUS_3            3             48
  CLUS_4            1             64
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNAZ MUTATED        3      4      3      1
  GNAZ WILD-TYPE     95     40     47     56
D355V4, multiclass
        clus
vv       GNAZ MUTATED GNAZ WILD-TYPE
  CLUS_1            3             95
  CLUS_2            4             40
  CLUS_3            3             47
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNAZ MUTATED        7      3      2      1      1
  GNAZ WILD-TYPE     55     56     38     36     58
D355V5, multiclass
        clus
vv       GNAZ MUTATED GNAZ WILD-TYPE
  CLUS_1            7             55
  CLUS_2            3             56
  CLUS_3            2             38
  CLUS_4            1             36
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GNAZ MUTATED        4      0     10
  GNAZ WILD-TYPE    102     54     87
D355V6, multiclass
        clus
vv       GNAZ MUTATED GNAZ WILD-TYPE
  CLUS_1            4            102
  CLUS_2            0             54
  CLUS_3           10             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GNAZ MUTATED       11      2      2
  GNAZ WILD-TYPE    112     93     69
D355V7, multiclass
        clus
vv       GNAZ MUTATED GNAZ WILD-TYPE
  CLUS_1           11            112
  CLUS_2            2             93
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GNAZ MUTATED       12      1      2
  GNAZ WILD-TYPE    145     62     67
D355V8, multiclass
        clus
vv       GNAZ MUTATED GNAZ WILD-TYPE
  CLUS_1           12            145
  CLUS_2            1             62
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GNAZ MUTATED        2      1      3      3      1      1
  GNAZ WILD-TYPE     31     18     56     36     15     44
D355V9, multiclass
        clus
vv       GNAZ MUTATED GNAZ WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             18
  CLUS_3            3             56
  CLUS_4            3             36
  CLUS_5            1             15
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GNAZ MUTATED        4      0      3      0      2      2
  GNAZ WILD-TYPE     43     39     32     32     21     33
D355V10, multiclass
        clus
vv       GNAZ MUTATED GNAZ WILD-TYPE
  CLUS_1            4             43
  CLUS_2            0             39
  CLUS_3            3             32
  CLUS_4            0             32
  CLUS_5            2             21
  CLUS_6            2             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(356) Variable = YBX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YBX2 MUTATED        0      3      0      1      0
  YBX2 WILD-TYPE     79    123     27     42     12
D356V1, multiclass
        clus
vv       YBX2 MUTATED YBX2 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            3            123
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YBX2 MUTATED        0      3      0      0
  YBX2 WILD-TYPE     71     73     34     63
D356V2, multiclass
        clus
vv       YBX2 MUTATED YBX2 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            3             73
  CLUS_3            0             34
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YBX2 MUTATED        0      1      2      0      1
  YBX2 WILD-TYPE     16     61     49     65     54
D356V3, multiclass
        clus
vv       YBX2 MUTATED YBX2 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            1             61
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YBX2 MUTATED        2      1      1      0
  YBX2 WILD-TYPE     96     43     49     57
D356V4, multiclass
        clus
vv       YBX2 MUTATED YBX2 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            1             43
  CLUS_3            1             49
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YBX2 MUTATED        2      0      0      1      0
  YBX2 WILD-TYPE     60     59     40     36     59
D356V5, multiclass
        clus
vv       YBX2 MUTATED YBX2 WILD-TYPE
  CLUS_1            2             60
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  YBX2 MUTATED        0      0      3
  YBX2 WILD-TYPE    106     54     94
D356V6, multiclass
        clus
vv       YBX2 MUTATED YBX2 WILD-TYPE
  CLUS_1            0            106
  CLUS_2            0             54
  CLUS_3            3             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  YBX2 MUTATED        4      0      0
  YBX2 WILD-TYPE    119     95     71
D356V7, multiclass
        clus
vv       YBX2 MUTATED YBX2 WILD-TYPE
  CLUS_1            4            119
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  YBX2 MUTATED        4      0      0
  YBX2 WILD-TYPE    153     63     69
D356V8, multiclass
        clus
vv       YBX2 MUTATED YBX2 WILD-TYPE
  CLUS_1            4            153
  CLUS_2            0             63
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  YBX2 MUTATED        2      1      0      0      0      0
  YBX2 WILD-TYPE     31     18     59     39     16     45
D356V9, multiclass
        clus
vv       YBX2 MUTATED YBX2 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             18
  CLUS_3            0             59
  CLUS_4            0             39
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  YBX2 MUTATED        3      0      0      0      0      0
  YBX2 WILD-TYPE     44     39     35     32     23     35
D356V10, multiclass
        clus
vv       YBX2 MUTATED YBX2 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            0             39
  CLUS_3            0             35
  CLUS_4            0             32
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(357) Variable = C12ORF51 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C12ORF51 MUTATED        1     21      4      1      3
  C12ORF51 WILD-TYPE     78    105     23     42      9
D357V1, multiclass
        clus
vv       C12ORF51 MUTATED C12ORF51 WILD-TYPE
  CLUS_1                1                 78
  CLUS_2               21                105
  CLUS_3                4                 23
  CLUS_4                1                 42
  CLUS_5                3                  9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF51 MUTATED        2     17      3      1
  C12ORF51 WILD-TYPE     69     59     31     62
D357V2, multiclass
        clus
vv       C12ORF51 MUTATED C12ORF51 WILD-TYPE
  CLUS_1                2                 69
  CLUS_2               17                 59
  CLUS_3                3                 31
  CLUS_4                1                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C12ORF51 MUTATED        0      9      8      4      5
  C12ORF51 WILD-TYPE     16     53     43     61     50
D357V3, multiclass
        clus
vv       C12ORF51 MUTATED C12ORF51 WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                9                 53
  CLUS_3                8                 43
  CLUS_4                4                 61
  CLUS_5                5                 50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF51 MUTATED        3     11      6      6
  C12ORF51 WILD-TYPE     95     33     44     51
D357V4, multiclass
        clus
vv       C12ORF51 MUTATED C12ORF51 WILD-TYPE
  CLUS_1                3                 95
  CLUS_2               11                 33
  CLUS_3                6                 44
  CLUS_4                6                 51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C12ORF51 MUTATED       12      6      4      2      1
  C12ORF51 WILD-TYPE     50     53     36     35     58
D357V5, multiclass
        clus
vv       C12ORF51 MUTATED C12ORF51 WILD-TYPE
  CLUS_1               12                 50
  CLUS_2                6                 53
  CLUS_3                4                 36
  CLUS_4                2                 35
  CLUS_5                1                 58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF51 MUTATED        5      4     16
  C12ORF51 WILD-TYPE    101     50     81
D357V6, multiclass
        clus
vv       C12ORF51 MUTATED C12ORF51 WILD-TYPE
  CLUS_1                5                101
  CLUS_2                4                 50
  CLUS_3               16                 81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF51 MUTATED       20      6      4
  C12ORF51 WILD-TYPE    103     89     67
D357V7, multiclass
        clus
vv       C12ORF51 MUTATED C12ORF51 WILD-TYPE
  CLUS_1               20                103
  CLUS_2                6                 89
  CLUS_3                4                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF51 MUTATED       22      5      3
  C12ORF51 WILD-TYPE    135     58     66
D357V8, multiclass
        clus
vv       C12ORF51 MUTATED C12ORF51 WILD-TYPE
  CLUS_1               22                135
  CLUS_2                5                 58
  CLUS_3                3                 66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C12ORF51 MUTATED        2      3      9      4      0      3
  C12ORF51 WILD-TYPE     31     16     50     35     16     42
D357V9, multiclass
        clus
vv       C12ORF51 MUTATED C12ORF51 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                3                 16
  CLUS_3                9                 50
  CLUS_4                4                 35
  CLUS_5                0                 16
  CLUS_6                3                 42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C12ORF51 MUTATED        5      3      5      4      3      1
  C12ORF51 WILD-TYPE     42     36     30     28     20     34
D357V10, multiclass
        clus
vv       C12ORF51 MUTATED C12ORF51 WILD-TYPE
  CLUS_1                5                 42
  CLUS_2                3                 36
  CLUS_3                5                 30
  CLUS_4                4                 28
  CLUS_5                3                 20
  CLUS_6                1                 34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(358) Variable = TACC2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TACC2 MUTATED        5     20      1      1      2
  TACC2 WILD-TYPE     74    106     26     42     10
D358V1, multiclass
        clus
vv       TACC2 MUTATED TACC2 WILD-TYPE
  CLUS_1             5              74
  CLUS_2            20             106
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TACC2 MUTATED        4     10      4      3
  TACC2 WILD-TYPE     67     66     30     60
D358V2, multiclass
        clus
vv       TACC2 MUTATED TACC2 WILD-TYPE
  CLUS_1             4              67
  CLUS_2            10              66
  CLUS_3             4              30
  CLUS_4             3              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TACC2 MUTATED        2      9      3      2      8
  TACC2 WILD-TYPE     14     53     48     63     47
D358V3, multiclass
        clus
vv       TACC2 MUTATED TACC2 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             9              53
  CLUS_3             3              48
  CLUS_4             2              63
  CLUS_5             8              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TACC2 MUTATED        8      8      5      3
  TACC2 WILD-TYPE     90     36     45     54
D358V4, multiclass
        clus
vv       TACC2 MUTATED TACC2 WILD-TYPE
  CLUS_1             8              90
  CLUS_2             8              36
  CLUS_3             5              45
  CLUS_4             3              54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TACC2 MUTATED       14      2      1      3      5
  TACC2 WILD-TYPE     48     57     39     34     54
D358V5, multiclass
        clus
vv       TACC2 MUTATED TACC2 WILD-TYPE
  CLUS_1            14              48
  CLUS_2             2              57
  CLUS_3             1              39
  CLUS_4             3              34
  CLUS_5             5              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TACC2 MUTATED       10      0     15
  TACC2 WILD-TYPE     96     54     82
D358V6, multiclass
        clus
vv       TACC2 MUTATED TACC2 WILD-TYPE
  CLUS_1            10              96
  CLUS_2             0              54
  CLUS_3            15              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TACC2 MUTATED       21      5      4
  TACC2 WILD-TYPE    102     90     67
D358V7, multiclass
        clus
vv       TACC2 MUTATED TACC2 WILD-TYPE
  CLUS_1            21             102
  CLUS_2             5              90
  CLUS_3             4              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TACC2 MUTATED       20      4      6
  TACC2 WILD-TYPE    137     59     63
D358V8, multiclass
        clus
vv       TACC2 MUTATED TACC2 WILD-TYPE
  CLUS_1            20             137
  CLUS_2             4              59
  CLUS_3             6              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TACC2 MUTATED        5      1      8      4      1      1
  TACC2 WILD-TYPE     28     18     51     35     15     44
D358V9, multiclass
        clus
vv       TACC2 MUTATED TACC2 WILD-TYPE
  CLUS_1             5              28
  CLUS_2             1              18
  CLUS_3             8              51
  CLUS_4             4              35
  CLUS_5             1              15
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TACC2 MUTATED        8      1      6      3      1      1
  TACC2 WILD-TYPE     39     38     29     29     22     34
D358V10, multiclass
        clus
vv       TACC2 MUTATED TACC2 WILD-TYPE
  CLUS_1             8              39
  CLUS_2             1              38
  CLUS_3             6              29
  CLUS_4             3              29
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(359) Variable = PIAS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIAS1 MUTATED        1      8      0      1      0
  PIAS1 WILD-TYPE     78    118     27     42     12
D359V1, multiclass
        clus
vv       PIAS1 MUTATED PIAS1 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             8             118
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIAS1 MUTATED        1      4      2      2
  PIAS1 WILD-TYPE     70     72     32     61
D359V2, multiclass
        clus
vv       PIAS1 MUTATED PIAS1 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             4              72
  CLUS_3             2              32
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIAS1 MUTATED        1      4      2      0      1
  PIAS1 WILD-TYPE     15     58     49     65     54
D359V3, multiclass
        clus
vv       PIAS1 MUTATED PIAS1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             4              58
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIAS1 MUTATED        2      4      2      0
  PIAS1 WILD-TYPE     96     40     48     57
D359V4, multiclass
        clus
vv       PIAS1 MUTATED PIAS1 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             4              40
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIAS1 MUTATED        6      1      0      1      1
  PIAS1 WILD-TYPE     56     58     40     36     58
D359V5, multiclass
        clus
vv       PIAS1 MUTATED PIAS1 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PIAS1 MUTATED        4      0      5
  PIAS1 WILD-TYPE    102     54     92
D359V6, multiclass
        clus
vv       PIAS1 MUTATED PIAS1 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             0              54
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PIAS1 MUTATED        8      1      1
  PIAS1 WILD-TYPE    115     94     70
D359V7, multiclass
        clus
vv       PIAS1 MUTATED PIAS1 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PIAS1 MUTATED        7      2      1
  PIAS1 WILD-TYPE    150     61     68
D359V8, multiclass
        clus
vv       PIAS1 MUTATED PIAS1 WILD-TYPE
  CLUS_1             7             150
  CLUS_2             2              61
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIAS1 MUTATED        0      0      5      3      1      0
  PIAS1 WILD-TYPE     33     19     54     36     15     45
D359V9, multiclass
        clus
vv       PIAS1 MUTATED PIAS1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              19
  CLUS_3             5              54
  CLUS_4             3              36
  CLUS_5             1              15
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIAS1 MUTATED        3      0      4      0      1      1
  PIAS1 WILD-TYPE     44     39     31     32     22     34
D359V10, multiclass
        clus
vv       PIAS1 MUTATED PIAS1 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             4              31
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(360) Variable = NUFIP2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUFIP2 MUTATED        0      4      2      0      1
  NUFIP2 WILD-TYPE     79    122     25     43     11
D360V1, multiclass
        clus
vv       NUFIP2 MUTATED NUFIP2 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              4              122
  CLUS_3              2               25
  CLUS_4              0               43
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUFIP2 MUTATED        1      3      2      0
  NUFIP2 WILD-TYPE     70     73     32     63
D360V2, multiclass
        clus
vv       NUFIP2 MUTATED NUFIP2 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              3               73
  CLUS_3              2               32
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUFIP2 MUTATED        0      1      4      0      2
  NUFIP2 WILD-TYPE     16     61     47     65     53
D360V3, multiclass
        clus
vv       NUFIP2 MUTATED NUFIP2 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              1               61
  CLUS_3              4               47
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUFIP2 MUTATED        4      2      0      1
  NUFIP2 WILD-TYPE     94     42     50     56
D360V4, multiclass
        clus
vv       NUFIP2 MUTATED NUFIP2 WILD-TYPE
  CLUS_1              4               94
  CLUS_2              2               42
  CLUS_3              0               50
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUFIP2 MUTATED        3      1      1      1      0
  NUFIP2 WILD-TYPE     59     58     39     36     59
D360V5, multiclass
        clus
vv       NUFIP2 MUTATED NUFIP2 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUFIP2 MUTATED        1      1      4
  NUFIP2 WILD-TYPE    105     53     93
D360V6, multiclass
        clus
vv       NUFIP2 MUTATED NUFIP2 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              1               53
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUFIP2 MUTATED        4      2      1
  NUFIP2 WILD-TYPE    119     93     70
D360V7, multiclass
        clus
vv       NUFIP2 MUTATED NUFIP2 WILD-TYPE
  CLUS_1              4              119
  CLUS_2              2               93
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUFIP2 MUTATED        5      1      1
  NUFIP2 WILD-TYPE    152     62     68
D360V8, multiclass
        clus
vv       NUFIP2 MUTATED NUFIP2 WILD-TYPE
  CLUS_1              5              152
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NUFIP2 MUTATED        0      1      2      2      0      1
  NUFIP2 WILD-TYPE     33     18     57     37     16     44
D360V9, multiclass
        clus
vv       NUFIP2 MUTATED NUFIP2 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NUFIP2 MUTATED        1      1      0      2      2      0
  NUFIP2 WILD-TYPE     46     38     35     30     21     35
D360V10, multiclass
        clus
vv       NUFIP2 MUTATED NUFIP2 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              1               38
  CLUS_3              0               35
  CLUS_4              2               30
  CLUS_5              2               21
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(361) Variable = RUSC2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUSC2 MUTATED        1     14      2      2      0
  RUSC2 WILD-TYPE     78    112     25     41     12
D361V1, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             1              78
  CLUS_2            14             112
  CLUS_3             2              25
  CLUS_4             2              41
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUSC2 MUTATED        0     10      3      3
  RUSC2 WILD-TYPE     71     66     31     60
D361V2, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             0              71
  CLUS_2            10              66
  CLUS_3             3              31
  CLUS_4             3              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUSC2 MUTATED        2      5      4      1      4
  RUSC2 WILD-TYPE     14     57     47     64     51
D361V3, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             5              57
  CLUS_3             4              47
  CLUS_4             1              64
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUSC2 MUTATED        7      7      2      0
  RUSC2 WILD-TYPE     91     37     48     57
D361V4, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             7              91
  CLUS_2             7              37
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUSC2 MUTATED        8      1      4      2      0
  RUSC2 WILD-TYPE     54     58     36     35     59
D361V5, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             8              54
  CLUS_2             1              58
  CLUS_3             4              36
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUSC2 MUTATED        3      1     11
  RUSC2 WILD-TYPE    103     53     86
D361V6, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             1              53
  CLUS_3            11              86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUSC2 MUTATED       15      4      0
  RUSC2 WILD-TYPE    108     91     71
D361V7, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1            15             108
  CLUS_2             4              91
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUSC2 MUTATED       14      4      1
  RUSC2 WILD-TYPE    143     59     68
D361V8, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1            14             143
  CLUS_2             4              59
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RUSC2 MUTATED        0      2      7      4      0      2
  RUSC2 WILD-TYPE     33     17     52     35     16     43
D361V9, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              17
  CLUS_3             7              52
  CLUS_4             4              35
  CLUS_5             0              16
  CLUS_6             2              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RUSC2 MUTATED        5      2      6      1      1      0
  RUSC2 WILD-TYPE     42     37     29     31     22     35
D361V10, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             5              42
  CLUS_2             2              37
  CLUS_3             6              29
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(362) Variable = EGR1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EGR1 MUTATED        0      8      1      0      1
  EGR1 WILD-TYPE     79    118     26     43     11
D362V1, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            8            118
  CLUS_3            1             26
  CLUS_4            0             43
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGR1 MUTATED        0      5      2      1
  EGR1 WILD-TYPE     71     71     32     62
D362V2, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            5             71
  CLUS_3            2             32
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EGR1 MUTATED        0      4      2      0      2
  EGR1 WILD-TYPE     16     58     49     65     53
D362V3, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            4             58
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGR1 MUTATED        2      3      3      0
  EGR1 WILD-TYPE     96     41     47     57
D362V4, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            3             41
  CLUS_3            3             47
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EGR1 MUTATED        5      0      1      2      0
  EGR1 WILD-TYPE     57     59     39     35     59
D362V5, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            5             57
  CLUS_2            0             59
  CLUS_3            1             39
  CLUS_4            2             35
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGR1 MUTATED        1      0      7
  EGR1 WILD-TYPE    105     54     90
D362V6, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            7             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGR1 MUTATED        9      1      0
  EGR1 WILD-TYPE    114     94     71
D362V7, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            9            114
  CLUS_2            1             94
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGR1 MUTATED        7      2      1
  EGR1 WILD-TYPE    150     61     68
D362V8, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            7            150
  CLUS_2            2             61
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EGR1 MUTATED        1      1      4      1      0      1
  EGR1 WILD-TYPE     32     18     55     38     16     44
D362V9, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            4             55
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EGR1 MUTATED        3      1      3      0      1      0
  EGR1 WILD-TYPE     44     38     32     32     22     35
D362V10, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            1             38
  CLUS_3            3             32
  CLUS_4            0             32
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(363) Variable = TAF6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF6 MUTATED        0      9      1      1      1
  TAF6 WILD-TYPE     79    117     26     42     11
D363V1, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            9            117
  CLUS_3            1             26
  CLUS_4            1             42
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF6 MUTATED        2      6      1      1
  TAF6 WILD-TYPE     69     70     33     62
D363V2, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            6             70
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF6 MUTATED        1      3      3      0      4
  TAF6 WILD-TYPE     15     59     48     65     51
D363V3, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            3             59
  CLUS_3            3             48
  CLUS_4            0             65
  CLUS_5            4             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF6 MUTATED        2      6      1      2
  TAF6 WILD-TYPE     96     38     49     55
D363V4, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            6             38
  CLUS_3            1             49
  CLUS_4            2             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF6 MUTATED        6      1      1      3      1
  TAF6 WILD-TYPE     56     58     39     34     58
D363V5, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            6             56
  CLUS_2            1             58
  CLUS_3            1             39
  CLUS_4            3             34
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAF6 MUTATED        3      3      6
  TAF6 WILD-TYPE    103     51     91
D363V6, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            3            103
  CLUS_2            3             51
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAF6 MUTATED        6      2      4
  TAF6 WILD-TYPE    117     93     67
D363V7, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            6            117
  CLUS_2            2             93
  CLUS_3            4             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAF6 MUTATED        9      1      2
  TAF6 WILD-TYPE    148     62     67
D363V8, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            9            148
  CLUS_2            1             62
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAF6 MUTATED        1      1      3      3      0      1
  TAF6 WILD-TYPE     32     18     56     36     16     44
D363V9, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            3             56
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAF6 MUTATED        2      0      2      2      2      1
  TAF6 WILD-TYPE     45     39     33     30     21     34
D363V10, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            2             33
  CLUS_4            2             30
  CLUS_5            2             21
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(364) Variable = C11ORF9 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF9 MUTATED        0      7      0      1      0
  C11ORF9 WILD-TYPE     79    119     27     42     12
D364V1, multiclass
        clus
vv       C11ORF9 MUTATED C11ORF9 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               7               119
  CLUS_3               0                27
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF9 MUTATED        0      4      1      1
  C11ORF9 WILD-TYPE     71     72     33     62
D364V2, multiclass
        clus
vv       C11ORF9 MUTATED C11ORF9 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               4                72
  CLUS_3               1                33
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF9 MUTATED        0      2      0      2      4
  C11ORF9 WILD-TYPE     16     60     51     63     51
D364V3, multiclass
        clus
vv       C11ORF9 MUTATED C11ORF9 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               2                60
  CLUS_3               0                51
  CLUS_4               2                63
  CLUS_5               4                51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF9 MUTATED        1      3      1      3
  C11ORF9 WILD-TYPE     97     41     49     54
D364V4, multiclass
        clus
vv       C11ORF9 MUTATED C11ORF9 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               3                41
  CLUS_3               1                49
  CLUS_4               3                54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF9 MUTATED        2      2      1      3      0
  C11ORF9 WILD-TYPE     60     57     39     34     59
D364V5, multiclass
        clus
vv       C11ORF9 MUTATED C11ORF9 WILD-TYPE
  CLUS_1               2                60
  CLUS_2               2                57
  CLUS_3               1                39
  CLUS_4               3                34
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C11ORF9 MUTATED        2      2      4
  C11ORF9 WILD-TYPE    104     52     93
D364V6, multiclass
        clus
vv       C11ORF9 MUTATED C11ORF9 WILD-TYPE
  CLUS_1               2               104
  CLUS_2               2                52
  CLUS_3               4                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C11ORF9 MUTATED        6      2      0
  C11ORF9 WILD-TYPE    117     93     71
D364V7, multiclass
        clus
vv       C11ORF9 MUTATED C11ORF9 WILD-TYPE
  CLUS_1               6               117
  CLUS_2               2                93
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C11ORF9 MUTATED        7      1      0
  C11ORF9 WILD-TYPE    150     62     69
D364V8, multiclass
        clus
vv       C11ORF9 MUTATED C11ORF9 WILD-TYPE
  CLUS_1               7               150
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C11ORF9 MUTATED        1      0      2      2      0      1
  C11ORF9 WILD-TYPE     32     19     57     37     16     44
D364V9, multiclass
        clus
vv       C11ORF9 MUTATED C11ORF9 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                19
  CLUS_3               2                57
  CLUS_4               2                37
  CLUS_5               0                16
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C11ORF9 MUTATED        1      0      2      1      2      0
  C11ORF9 WILD-TYPE     46     39     33     31     21     35
D364V10, multiclass
        clus
vv       C11ORF9 MUTATED C11ORF9 WILD-TYPE
  CLUS_1               1                46
  CLUS_2               0                39
  CLUS_3               2                33
  CLUS_4               1                31
  CLUS_5               2                21
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(365) Variable = KCNH4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH4 MUTATED        1      5      1      0      0
  KCNH4 WILD-TYPE     78    121     26     43     12
D365V1, multiclass
        clus
vv       KCNH4 MUTATED KCNH4 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             5             121
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH4 MUTATED        1      5      1      0
  KCNH4 WILD-TYPE     70     71     33     63
D365V2, multiclass
        clus
vv       KCNH4 MUTATED KCNH4 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             5              71
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH4 MUTATED        0      2      0      0      3
  KCNH4 WILD-TYPE     16     60     51     65     52
D365V3, multiclass
        clus
vv       KCNH4 MUTATED KCNH4 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             0              51
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH4 MUTATED        0      3      2      0
  KCNH4 WILD-TYPE     98     41     48     57
D365V4, multiclass
        clus
vv       KCNH4 MUTATED KCNH4 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             3              41
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH4 MUTATED        2      0      1      2      1
  KCNH4 WILD-TYPE     60     59     39     35     58
D365V5, multiclass
        clus
vv       KCNH4 MUTATED KCNH4 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             2              35
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNH4 MUTATED        0      0      6
  KCNH4 WILD-TYPE    106     54     91
D365V6, multiclass
        clus
vv       KCNH4 MUTATED KCNH4 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              54
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNH4 MUTATED        6      0      1
  KCNH4 WILD-TYPE    117     95     70
D365V7, multiclass
        clus
vv       KCNH4 MUTATED KCNH4 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             0              95
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNH4 MUTATED        6      0      1
  KCNH4 WILD-TYPE    151     63     68
D365V8, multiclass
        clus
vv       KCNH4 MUTATED KCNH4 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNH4 MUTATED        2      1      2      1      0      0
  KCNH4 WILD-TYPE     31     18     57     38     16     45
D365V9, multiclass
        clus
vv       KCNH4 MUTATED KCNH4 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              18
  CLUS_3             2              57
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNH4 MUTATED        4      0      2      0      0      0
  KCNH4 WILD-TYPE     43     39     33     32     23     35
D365V10, multiclass
        clus
vv       KCNH4 MUTATED KCNH4 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(366) Variable = TPTE2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPTE2 MUTATED        4      5      1      0      0
  TPTE2 WILD-TYPE     75    121     26     43     12
D366V1, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             4              75
  CLUS_2             5             121
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPTE2 MUTATED        4      2      0      2
  TPTE2 WILD-TYPE     67     74     34     61
D366V2, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             4              67
  CLUS_2             2              74
  CLUS_3             0              34
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPTE2 MUTATED        2      2      1      1      3
  TPTE2 WILD-TYPE     14     60     50     64     52
D366V3, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             2              60
  CLUS_3             1              50
  CLUS_4             1              64
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPTE2 MUTATED        4      2      2      1
  TPTE2 WILD-TYPE     94     42     48     56
D366V4, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             4              94
  CLUS_2             2              42
  CLUS_3             2              48
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPTE2 MUTATED        2      0      0      3      1
  TPTE2 WILD-TYPE     60     59     40     34     58
D366V5, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             3              34
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        2      2      2
  TPTE2 WILD-TYPE    104     52     95
D366V6, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             2              52
  CLUS_3             2              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        5      2      3
  TPTE2 WILD-TYPE    118     93     68
D366V7, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             5             118
  CLUS_2             2              93
  CLUS_3             3              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        6      0      4
  TPTE2 WILD-TYPE    151     63     65
D366V8, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             0              63
  CLUS_3             4              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TPTE2 MUTATED        3      1      2      0      1      0
  TPTE2 WILD-TYPE     30     18     57     39     15     45
D366V9, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             1              18
  CLUS_3             2              57
  CLUS_4             0              39
  CLUS_5             1              15
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TPTE2 MUTATED        2      0      1      2      0      2
  TPTE2 WILD-TYPE     45     39     34     30     23     33
D366V10, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             2              30
  CLUS_5             0              23
  CLUS_6             2              33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(367) Variable = IGF2BP3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGF2BP3 MUTATED        0      3      0      1      0
  IGF2BP3 WILD-TYPE     79    123     27     42     12
D367V1, multiclass
        clus
vv       IGF2BP3 MUTATED IGF2BP3 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               3               123
  CLUS_3               0                27
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGF2BP3 MUTATED        0      4      0      0
  IGF2BP3 WILD-TYPE     71     72     34     63
D367V2, multiclass
        clus
vv       IGF2BP3 MUTATED IGF2BP3 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               4                72
  CLUS_3               0                34
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGF2BP3 MUTATED        0      1      0      1      1
  IGF2BP3 WILD-TYPE     16     61     51     64     54
D367V3, multiclass
        clus
vv       IGF2BP3 MUTATED IGF2BP3 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               1                61
  CLUS_3               0                51
  CLUS_4               1                64
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGF2BP3 MUTATED        0      1      1      1
  IGF2BP3 WILD-TYPE     98     43     49     56
D367V4, multiclass
        clus
vv       IGF2BP3 MUTATED IGF2BP3 WILD-TYPE
  CLUS_1               0                98
  CLUS_2               1                43
  CLUS_3               1                49
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGF2BP3 MUTATED        3      1      1      0      0
  IGF2BP3 WILD-TYPE     59     58     39     37     59
D367V5, multiclass
        clus
vv       IGF2BP3 MUTATED IGF2BP3 WILD-TYPE
  CLUS_1               3                59
  CLUS_2               1                58
  CLUS_3               1                39
  CLUS_4               0                37
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  IGF2BP3 MUTATED        1      0      4
  IGF2BP3 WILD-TYPE    105     54     93
D367V6, multiclass
        clus
vv       IGF2BP3 MUTATED IGF2BP3 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               0                54
  CLUS_3               4                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  IGF2BP3 MUTATED        5      0      0
  IGF2BP3 WILD-TYPE    118     95     71
D367V7, multiclass
        clus
vv       IGF2BP3 MUTATED IGF2BP3 WILD-TYPE
  CLUS_1               5               118
  CLUS_2               0                95
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  IGF2BP3 MUTATED        5      0      0
  IGF2BP3 WILD-TYPE    152     63     69
D367V8, multiclass
        clus
vv       IGF2BP3 MUTATED IGF2BP3 WILD-TYPE
  CLUS_1               5               152
  CLUS_2               0                63
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IGF2BP3 MUTATED        2      1      1      0      0      0
  IGF2BP3 WILD-TYPE     31     18     58     39     16     45
D367V9, multiclass
        clus
vv       IGF2BP3 MUTATED IGF2BP3 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               1                18
  CLUS_3               1                58
  CLUS_4               0                39
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IGF2BP3 MUTATED        2      0      1      1      0      0
  IGF2BP3 WILD-TYPE     45     39     34     31     23     35
D367V10, multiclass
        clus
vv       IGF2BP3 MUTATED IGF2BP3 WILD-TYPE
  CLUS_1               2                45
  CLUS_2               0                39
  CLUS_3               1                34
  CLUS_4               1                31
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(368) Variable = ALG10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALG10 MUTATED        1      7      1      1      1
  ALG10 WILD-TYPE     78    119     26     42     11
D368V1, multiclass
        clus
vv       ALG10 MUTATED ALG10 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             7             119
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG10 MUTATED        0      7      1      1
  ALG10 WILD-TYPE     71     69     33     62
D368V2, multiclass
        clus
vv       ALG10 MUTATED ALG10 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             7              69
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALG10 MUTATED        1      5      3      0      2
  ALG10 WILD-TYPE     15     57     48     65     53
D368V3, multiclass
        clus
vv       ALG10 MUTATED ALG10 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             5              57
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG10 MUTATED        4      4      3      0
  ALG10 WILD-TYPE     94     40     47     57
D368V4, multiclass
        clus
vv       ALG10 MUTATED ALG10 WILD-TYPE
  CLUS_1             4              94
  CLUS_2             4              40
  CLUS_3             3              47
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALG10 MUTATED        4      2      1      2      1
  ALG10 WILD-TYPE     58     57     39     35     58
D368V5, multiclass
        clus
vv       ALG10 MUTATED ALG10 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             2              57
  CLUS_3             1              39
  CLUS_4             2              35
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALG10 MUTATED        3      2      5
  ALG10 WILD-TYPE    103     52     92
D368V6, multiclass
        clus
vv       ALG10 MUTATED ALG10 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             2              52
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALG10 MUTATED        6      3      2
  ALG10 WILD-TYPE    117     92     69
D368V7, multiclass
        clus
vv       ALG10 MUTATED ALG10 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             3              92
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALG10 MUTATED        9      1      1
  ALG10 WILD-TYPE    148     62     68
D368V8, multiclass
        clus
vv       ALG10 MUTATED ALG10 WILD-TYPE
  CLUS_1             9             148
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ALG10 MUTATED        0      0      4      2      0      1
  ALG10 WILD-TYPE     33     19     55     37     16     44
D368V9, multiclass
        clus
vv       ALG10 MUTATED ALG10 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              19
  CLUS_3             4              55
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ALG10 MUTATED        1      1      2      1      1      1
  ALG10 WILD-TYPE     46     38     33     31     22     34
D368V10, multiclass
        clus
vv       ALG10 MUTATED ALG10 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              38
  CLUS_3             2              33
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(369) Variable = PLAG1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLAG1 MUTATED        0      9      1      1      0
  PLAG1 WILD-TYPE     79    117     26     42     12
D369V1, multiclass
        clus
vv       PLAG1 MUTATED PLAG1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             9             117
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLAG1 MUTATED        0      5      0      2
  PLAG1 WILD-TYPE     71     71     34     61
D369V2, multiclass
        clus
vv       PLAG1 MUTATED PLAG1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             5              71
  CLUS_3             0              34
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLAG1 MUTATED        2      1      3      2      1
  PLAG1 WILD-TYPE     14     61     48     63     54
D369V3, multiclass
        clus
vv       PLAG1 MUTATED PLAG1 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             1              61
  CLUS_3             3              48
  CLUS_4             2              63
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLAG1 MUTATED        4      3      0      2
  PLAG1 WILD-TYPE     94     41     50     55
D369V4, multiclass
        clus
vv       PLAG1 MUTATED PLAG1 WILD-TYPE
  CLUS_1             4              94
  CLUS_2             3              41
  CLUS_3             0              50
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLAG1 MUTATED        4      2      1      3      0
  PLAG1 WILD-TYPE     58     57     39     34     59
D369V5, multiclass
        clus
vv       PLAG1 MUTATED PLAG1 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             2              57
  CLUS_3             1              39
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLAG1 MUTATED        2      1      7
  PLAG1 WILD-TYPE    104     53     90
D369V6, multiclass
        clus
vv       PLAG1 MUTATED PLAG1 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              53
  CLUS_3             7              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLAG1 MUTATED       10      1      0
  PLAG1 WILD-TYPE    113     94     71
D369V7, multiclass
        clus
vv       PLAG1 MUTATED PLAG1 WILD-TYPE
  CLUS_1            10             113
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLAG1 MUTATED       10      1      0
  PLAG1 WILD-TYPE    147     62     69
D369V8, multiclass
        clus
vv       PLAG1 MUTATED PLAG1 WILD-TYPE
  CLUS_1            10             147
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLAG1 MUTATED        1      1      3      1      0      1
  PLAG1 WILD-TYPE     32     18     56     38     16     44
D369V9, multiclass
        clus
vv       PLAG1 MUTATED PLAG1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             3              56
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLAG1 MUTATED        3      1      3      0      0      0
  PLAG1 WILD-TYPE     44     38     32     32     23     35
D369V10, multiclass
        clus
vv       PLAG1 MUTATED PLAG1 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(370) Variable = ARFGEF1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARFGEF1 MUTATED        1     19      2      1      1
  ARFGEF1 WILD-TYPE     78    107     25     42     11
D370V1, multiclass
        clus
vv       ARFGEF1 MUTATED ARFGEF1 WILD-TYPE
  CLUS_1               1                78
  CLUS_2              19               107
  CLUS_3               2                25
  CLUS_4               1                42
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARFGEF1 MUTATED        1     13      3      1
  ARFGEF1 WILD-TYPE     70     63     31     62
D370V2, multiclass
        clus
vv       ARFGEF1 MUTATED ARFGEF1 WILD-TYPE
  CLUS_1               1                70
  CLUS_2              13                63
  CLUS_3               3                31
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARFGEF1 MUTATED        1     11      3      0      6
  ARFGEF1 WILD-TYPE     15     51     48     65     49
D370V3, multiclass
        clus
vv       ARFGEF1 MUTATED ARFGEF1 WILD-TYPE
  CLUS_1               1                15
  CLUS_2              11                51
  CLUS_3               3                48
  CLUS_4               0                65
  CLUS_5               6                49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARFGEF1 MUTATED        3     12      5      1
  ARFGEF1 WILD-TYPE     95     32     45     56
D370V4, multiclass
        clus
vv       ARFGEF1 MUTATED ARFGEF1 WILD-TYPE
  CLUS_1               3                95
  CLUS_2              12                32
  CLUS_3               5                45
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARFGEF1 MUTATED       15      1      0      6      1
  ARFGEF1 WILD-TYPE     47     58     40     31     58
D370V5, multiclass
        clus
vv       ARFGEF1 MUTATED ARFGEF1 WILD-TYPE
  CLUS_1              15                47
  CLUS_2               1                58
  CLUS_3               0                40
  CLUS_4               6                31
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARFGEF1 MUTATED        5      0     18
  ARFGEF1 WILD-TYPE    101     54     79
D370V6, multiclass
        clus
vv       ARFGEF1 MUTATED ARFGEF1 WILD-TYPE
  CLUS_1               5               101
  CLUS_2               0                54
  CLUS_3              18                79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARFGEF1 MUTATED       22      0      2
  ARFGEF1 WILD-TYPE    101     95     69
D370V7, multiclass
        clus
vv       ARFGEF1 MUTATED ARFGEF1 WILD-TYPE
  CLUS_1              22               101
  CLUS_2               0                95
  CLUS_3               2                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARFGEF1 MUTATED       23      0      1
  ARFGEF1 WILD-TYPE    134     63     68
D370V8, multiclass
        clus
vv       ARFGEF1 MUTATED ARFGEF1 WILD-TYPE
  CLUS_1              23               134
  CLUS_2               0                63
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARFGEF1 MUTATED        4      3      5      4      0      0
  ARFGEF1 WILD-TYPE     29     16     54     35     16     45
D370V9, multiclass
        clus
vv       ARFGEF1 MUTATED ARFGEF1 WILD-TYPE
  CLUS_1               4                29
  CLUS_2               3                16
  CLUS_3               5                54
  CLUS_4               4                35
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARFGEF1 MUTATED        9      0      2      3      2      0
  ARFGEF1 WILD-TYPE     38     39     33     29     21     35
D370V10, multiclass
        clus
vv       ARFGEF1 MUTATED ARFGEF1 WILD-TYPE
  CLUS_1               9                38
  CLUS_2               0                39
  CLUS_3               2                33
  CLUS_4               3                29
  CLUS_5               2                21
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(371) Variable = SLC12A7 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC12A7 MUTATED        2     14      1      0      0
  SLC12A7 WILD-TYPE     77    112     26     43     12
D371V1, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               2                77
  CLUS_2              14               112
  CLUS_3               1                26
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A7 MUTATED        2     12      1      1
  SLC12A7 WILD-TYPE     69     64     33     62
D371V2, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               2                69
  CLUS_2              12                64
  CLUS_3               1                33
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC12A7 MUTATED        1      6      1      0      4
  SLC12A7 WILD-TYPE     15     56     50     65     51
D371V3, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               6                56
  CLUS_3               1                50
  CLUS_4               0                65
  CLUS_5               4                51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A7 MUTATED        1      6      3      2
  SLC12A7 WILD-TYPE     97     38     47     55
D371V4, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               6                38
  CLUS_3               3                47
  CLUS_4               2                55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC12A7 MUTATED       10      1      1      3      1
  SLC12A7 WILD-TYPE     52     58     39     34     58
D371V5, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1              10                52
  CLUS_2               1                58
  CLUS_3               1                39
  CLUS_4               3                34
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A7 MUTATED        4      0     12
  SLC12A7 WILD-TYPE    102     54     85
D371V6, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               4               102
  CLUS_2               0                54
  CLUS_3              12                85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A7 MUTATED       14      1      3
  SLC12A7 WILD-TYPE    109     94     68
D371V7, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1              14               109
  CLUS_2               1                94
  CLUS_3               3                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A7 MUTATED       16      1      1
  SLC12A7 WILD-TYPE    141     62     68
D371V8, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1              16               141
  CLUS_2               1                62
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC12A7 MUTATED        2      4      5      4      0      0
  SLC12A7 WILD-TYPE     31     15     54     35     16     45
D371V9, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               4                15
  CLUS_3               5                54
  CLUS_4               4                35
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC12A7 MUTATED        9      0      3      1      2      0
  SLC12A7 WILD-TYPE     38     39     32     31     21     35
D371V10, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               9                38
  CLUS_2               0                39
  CLUS_3               3                32
  CLUS_4               1                31
  CLUS_5               2                21
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(372) Variable = TRUB1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRUB1 MUTATED        1      8      0      0      0
  TRUB1 WILD-TYPE     78    118     27     43     12
D372V1, multiclass
        clus
vv       TRUB1 MUTATED TRUB1 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             8             118
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRUB1 MUTATED        0      6      0      2
  TRUB1 WILD-TYPE     71     70     34     61
D372V2, multiclass
        clus
vv       TRUB1 MUTATED TRUB1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             6              70
  CLUS_3             0              34
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRUB1 MUTATED        1      5      1      0      1
  TRUB1 WILD-TYPE     15     57     50     65     54
D372V3, multiclass
        clus
vv       TRUB1 MUTATED TRUB1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             5              57
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRUB1 MUTATED        1      4      3      0
  TRUB1 WILD-TYPE     97     40     47     57
D372V4, multiclass
        clus
vv       TRUB1 MUTATED TRUB1 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             4              40
  CLUS_3             3              47
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRUB1 MUTATED        7      0      0      1      1
  TRUB1 WILD-TYPE     55     59     40     36     58
D372V5, multiclass
        clus
vv       TRUB1 MUTATED TRUB1 WILD-TYPE
  CLUS_1             7              55
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRUB1 MUTATED        2      0      7
  TRUB1 WILD-TYPE    104     54     90
D372V6, multiclass
        clus
vv       TRUB1 MUTATED TRUB1 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             7              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRUB1 MUTATED        6      1      2
  TRUB1 WILD-TYPE    117     94     69
D372V7, multiclass
        clus
vv       TRUB1 MUTATED TRUB1 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             1              94
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRUB1 MUTATED        8      0      1
  TRUB1 WILD-TYPE    149     63     68
D372V8, multiclass
        clus
vv       TRUB1 MUTATED TRUB1 WILD-TYPE
  CLUS_1             8             149
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRUB1 MUTATED        1      0      3      4      0      0
  TRUB1 WILD-TYPE     32     19     56     35     16     45
D372V9, multiclass
        clus
vv       TRUB1 MUTATED TRUB1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             3              56
  CLUS_4             4              35
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRUB1 MUTATED        3      0      2      1      2      0
  TRUB1 WILD-TYPE     44     39     33     31     21     35
D372V10, multiclass
        clus
vv       TRUB1 MUTATED TRUB1 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             1              31
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(373) Variable = SRCIN1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRCIN1 MUTATED        2      8      3      0      0
  SRCIN1 WILD-TYPE     77    118     24     43     12
D373V1, multiclass
        clus
vv       SRCIN1 MUTATED SRCIN1 WILD-TYPE
  CLUS_1              2               77
  CLUS_2              8              118
  CLUS_3              3               24
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRCIN1 MUTATED        2      5      2      1
  SRCIN1 WILD-TYPE     69     71     32     62
D373V2, multiclass
        clus
vv       SRCIN1 MUTATED SRCIN1 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              5               71
  CLUS_3              2               32
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRCIN1 MUTATED        0      6      2      0      2
  SRCIN1 WILD-TYPE     16     56     49     65     53
D373V3, multiclass
        clus
vv       SRCIN1 MUTATED SRCIN1 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              6               56
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRCIN1 MUTATED        1      6      2      1
  SRCIN1 WILD-TYPE     97     38     48     56
D373V4, multiclass
        clus
vv       SRCIN1 MUTATED SRCIN1 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              6               38
  CLUS_3              2               48
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRCIN1 MUTATED        4      0      2      5      1
  SRCIN1 WILD-TYPE     58     59     38     32     58
D373V5, multiclass
        clus
vv       SRCIN1 MUTATED SRCIN1 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              0               59
  CLUS_3              2               38
  CLUS_4              5               32
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SRCIN1 MUTATED        2      0     10
  SRCIN1 WILD-TYPE    104     54     87
D373V6, multiclass
        clus
vv       SRCIN1 MUTATED SRCIN1 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              0               54
  CLUS_3             10               87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SRCIN1 MUTATED       10      2      1
  SRCIN1 WILD-TYPE    113     93     70
D373V7, multiclass
        clus
vv       SRCIN1 MUTATED SRCIN1 WILD-TYPE
  CLUS_1             10              113
  CLUS_2              2               93
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SRCIN1 MUTATED        9      1      3
  SRCIN1 WILD-TYPE    148     62     66
D373V8, multiclass
        clus
vv       SRCIN1 MUTATED SRCIN1 WILD-TYPE
  CLUS_1              9              148
  CLUS_2              1               62
  CLUS_3              3               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SRCIN1 MUTATED        1      1      4      3      0      1
  SRCIN1 WILD-TYPE     32     18     55     36     16     44
D373V9, multiclass
        clus
vv       SRCIN1 MUTATED SRCIN1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              4               55
  CLUS_4              3               36
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SRCIN1 MUTATED        5      1      1      1      1      1
  SRCIN1 WILD-TYPE     42     38     34     31     22     34
D373V10, multiclass
        clus
vv       SRCIN1 MUTATED SRCIN1 WILD-TYPE
  CLUS_1              5               42
  CLUS_2              1               38
  CLUS_3              1               34
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(374) Variable = CA2 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CA2 MUTATED        0      5      0      0      0
  CA2 WILD-TYPE     79    121     27     43     12
D374V1, multiclass
        clus
vv       CA2 MUTATED CA2 WILD-TYPE
  CLUS_1           0            79
  CLUS_2           5           121
  CLUS_3           0            27
  CLUS_4           0            43
  CLUS_5           0            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CA2 MUTATED        1      4      0      0
  CA2 WILD-TYPE     70     72     34     63
D374V2, multiclass
        clus
vv       CA2 MUTATED CA2 WILD-TYPE
  CLUS_1           1            70
  CLUS_2           4            72
  CLUS_3           0            34
  CLUS_4           0            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CA2 MUTATED        0      0      4      0      1
  CA2 WILD-TYPE     16     62     47     65     54
D374V3, multiclass
        clus
vv       CA2 MUTATED CA2 WILD-TYPE
  CLUS_1           0            16
  CLUS_2           0            62
  CLUS_3           4            47
  CLUS_4           0            65
  CLUS_5           1            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CA2 MUTATED        1      4      0      0
  CA2 WILD-TYPE     97     40     50     57
D374V4, multiclass
        clus
vv       CA2 MUTATED CA2 WILD-TYPE
  CLUS_1           1            97
  CLUS_2           4            40
  CLUS_3           0            50
  CLUS_4           0            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CA2 MUTATED        3      0      1      1      0
  CA2 WILD-TYPE     59     59     39     36     59
D374V5, multiclass
        clus
vv       CA2 MUTATED CA2 WILD-TYPE
  CLUS_1           3            59
  CLUS_2           0            59
  CLUS_3           1            39
  CLUS_4           1            36
  CLUS_5           0            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CA2 MUTATED        0      0      5
  CA2 WILD-TYPE    106     54     92
D374V6, multiclass
        clus
vv       CA2 MUTATED CA2 WILD-TYPE
  CLUS_1           0           106
  CLUS_2           0            54
  CLUS_3           5            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CA2 MUTATED        4      0      1
  CA2 WILD-TYPE    119     95     70
D374V7, multiclass
        clus
vv       CA2 MUTATED CA2 WILD-TYPE
  CLUS_1           4           119
  CLUS_2           0            95
  CLUS_3           1            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CA2 MUTATED        5      0      0
  CA2 WILD-TYPE    152     63     69
D374V8, multiclass
        clus
vv       CA2 MUTATED CA2 WILD-TYPE
  CLUS_1           5           152
  CLUS_2           0            63
  CLUS_3           0            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CA2 MUTATED        1      1      1      2      0      0
  CA2 WILD-TYPE     32     18     58     37     16     45
D374V9, multiclass
        clus
vv       CA2 MUTATED CA2 WILD-TYPE
  CLUS_1           1            32
  CLUS_2           1            18
  CLUS_3           1            58
  CLUS_4           2            37
  CLUS_5           0            16
  CLUS_6           0            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CA2 MUTATED        4      0      0      0      1      0
  CA2 WILD-TYPE     43     39     35     32     22     35
D374V10, multiclass
        clus
vv       CA2 MUTATED CA2 WILD-TYPE
  CLUS_1           4            43
  CLUS_2           0            39
  CLUS_3           0            35
  CLUS_4           0            32
  CLUS_5           1            22
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(375) Variable = CDH16 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH16 MUTATED        1      9      0      0      2
  CDH16 WILD-TYPE     78    117     27     43     10
D375V1, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             9             117
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH16 MUTATED        1      6      2      1
  CDH16 WILD-TYPE     70     70     32     62
D375V2, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             6              70
  CLUS_3             2              32
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH16 MUTATED        0      5      2      1      3
  CDH16 WILD-TYPE     16     57     49     64     52
D375V3, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             5              57
  CLUS_3             2              49
  CLUS_4             1              64
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH16 MUTATED        4      3      4      0
  CDH16 WILD-TYPE     94     41     46     57
D375V4, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             4              94
  CLUS_2             3              41
  CLUS_3             4              46
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH16 MUTATED        6      1      2      1      0
  CDH16 WILD-TYPE     56     58     38     36     59
D375V5, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             1              58
  CLUS_3             2              38
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH16 MUTATED        2      0      8
  CDH16 WILD-TYPE    104     54     89
D375V6, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH16 MUTATED       10      1      1
  CDH16 WILD-TYPE    113     94     70
D375V7, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1            10             113
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH16 MUTATED        9      1      2
  CDH16 WILD-TYPE    148     62     67
D375V8, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             9             148
  CLUS_2             1              62
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDH16 MUTATED        2      0      3      2      0      0
  CDH16 WILD-TYPE     31     19     56     37     16     45
D375V9, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              19
  CLUS_3             3              56
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDH16 MUTATED        3      0      1      1      2      0
  CDH16 WILD-TYPE     44     39     34     31     21     35
D375V10, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             1              31
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(376) Variable = ANKRD23 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD23 MUTATED        1      4      0      0      0
  ANKRD23 WILD-TYPE     78    122     27     43     12
D376V1, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               1                78
  CLUS_2               4               122
  CLUS_3               0                27
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD23 MUTATED        1      3      0      0
  ANKRD23 WILD-TYPE     70     73     34     63
D376V2, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               3                73
  CLUS_3               0                34
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD23 MUTATED        0      3      1      1      0
  ANKRD23 WILD-TYPE     16     59     50     64     55
D376V3, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               3                59
  CLUS_3               1                50
  CLUS_4               1                64
  CLUS_5               0                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD23 MUTATED        1      2      1      1
  ANKRD23 WILD-TYPE     97     42     49     56
D376V4, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               2                42
  CLUS_3               1                49
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD23 MUTATED        1      1      0      1      1
  ANKRD23 WILD-TYPE     61     58     40     36     58
D376V5, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               1                61
  CLUS_2               1                58
  CLUS_3               0                40
  CLUS_4               1                36
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD23 MUTATED        1      1      2
  ANKRD23 WILD-TYPE    105     53     95
D376V6, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               1                53
  CLUS_3               2                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD23 MUTATED        2      2      1
  ANKRD23 WILD-TYPE    121     93     70
D376V7, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               2               121
  CLUS_2               2                93
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD23 MUTATED        2      2      1
  ANKRD23 WILD-TYPE    155     61     68
D376V8, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               2               155
  CLUS_2               2                61
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ANKRD23 MUTATED        2      0      1      1      0      0
  ANKRD23 WILD-TYPE     31     19     58     38     16     45
D376V9, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                19
  CLUS_3               1                58
  CLUS_4               1                38
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ANKRD23 MUTATED        1      0      1      0      1      1
  ANKRD23 WILD-TYPE     46     39     34     32     22     34
D376V10, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               1                46
  CLUS_2               0                39
  CLUS_3               1                34
  CLUS_4               0                32
  CLUS_5               1                22
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(377) Variable = HDLBP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HDLBP MUTATED        1     15      1      3      3
  HDLBP WILD-TYPE     78    111     26     40      9
D377V1, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             1              78
  CLUS_2            15             111
  CLUS_3             1              26
  CLUS_4             3              40
  CLUS_5             3               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDLBP MUTATED        2      7      6      4
  HDLBP WILD-TYPE     69     69     28     59
D377V2, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             2              69
  CLUS_2             7              69
  CLUS_3             6              28
  CLUS_4             4              59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HDLBP MUTATED        2      8      3      1      6
  HDLBP WILD-TYPE     14     54     48     64     49
D377V3, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             2              14
  CLUS_2             8              54
  CLUS_3             3              48
  CLUS_4             1              64
  CLUS_5             6              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDLBP MUTATED        6      6      4      4
  HDLBP WILD-TYPE     92     38     46     53
D377V4, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             6              92
  CLUS_2             6              38
  CLUS_3             4              46
  CLUS_4             4              53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HDLBP MUTATED       15      2      1      3      2
  HDLBP WILD-TYPE     47     57     39     34     57
D377V5, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1            15              47
  CLUS_2             2              57
  CLUS_3             1              39
  CLUS_4             3              34
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDLBP MUTATED        6      2     15
  HDLBP WILD-TYPE    100     52     82
D377V6, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             6             100
  CLUS_2             2              52
  CLUS_3            15              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDLBP MUTATED       20      3      1
  HDLBP WILD-TYPE    103     92     70
D377V7, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1            20             103
  CLUS_2             3              92
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDLBP MUTATED       20      3      1
  HDLBP WILD-TYPE    137     60     68
D377V8, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1            20             137
  CLUS_2             3              60
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HDLBP MUTATED        5      2      6      3      1      1
  HDLBP WILD-TYPE     28     17     53     36     15     44
D377V9, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             5              28
  CLUS_2             2              17
  CLUS_3             6              53
  CLUS_4             3              36
  CLUS_5             1              15
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HDLBP MUTATED        9      1      4      0      3      1
  HDLBP WILD-TYPE     38     38     31     32     20     34
D377V10, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             9              38
  CLUS_2             1              38
  CLUS_3             4              31
  CLUS_4             0              32
  CLUS_5             3              20
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(378) Variable = HEXDC MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HEXDC MUTATED        0      5      0      0      0
  HEXDC WILD-TYPE     79    121     27     43     12
D378V1, multiclass
        clus
vv       HEXDC MUTATED HEXDC WILD-TYPE
  CLUS_1             0              79
  CLUS_2             5             121
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEXDC MUTATED        0      3      0      1
  HEXDC WILD-TYPE     71     73     34     62
D378V2, multiclass
        clus
vv       HEXDC MUTATED HEXDC WILD-TYPE
  CLUS_1             0              71
  CLUS_2             3              73
  CLUS_3             0              34
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HEXDC MUTATED        0      0      3      0      2
  HEXDC WILD-TYPE     16     62     48     65     53
D378V3, multiclass
        clus
vv       HEXDC MUTATED HEXDC WILD-TYPE
  CLUS_1             0              16
  CLUS_2             0              62
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEXDC MUTATED        3      2      0      0
  HEXDC WILD-TYPE     95     42     50     57
D378V4, multiclass
        clus
vv       HEXDC MUTATED HEXDC WILD-TYPE
  CLUS_1             3              95
  CLUS_2             2              42
  CLUS_3             0              50
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HEXDC MUTATED        1      1      2      0      0
  HEXDC WILD-TYPE     61     58     38     37     59
D378V5, multiclass
        clus
vv       HEXDC MUTATED HEXDC WILD-TYPE
  CLUS_1             1              61
  CLUS_2             1              58
  CLUS_3             2              38
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HEXDC MUTATED        0      1      3
  HEXDC WILD-TYPE    106     53     94
D378V6, multiclass
        clus
vv       HEXDC MUTATED HEXDC WILD-TYPE
  CLUS_1             0             106
  CLUS_2             1              53
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HEXDC MUTATED        4      1      0
  HEXDC WILD-TYPE    119     94     71
D378V7, multiclass
        clus
vv       HEXDC MUTATED HEXDC WILD-TYPE
  CLUS_1             4             119
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HEXDC MUTATED        4      1      0
  HEXDC WILD-TYPE    153     62     69
D378V8, multiclass
        clus
vv       HEXDC MUTATED HEXDC WILD-TYPE
  CLUS_1             4             153
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HEXDC MUTATED        0      0      0      2      0      1
  HEXDC WILD-TYPE     33     19     59     37     16     44
D378V9, multiclass
        clus
vv       HEXDC MUTATED HEXDC WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              19
  CLUS_3             0              59
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HEXDC MUTATED        0      1      0      1      1      0
  HEXDC WILD-TYPE     47     38     35     31     22     35
D378V10, multiclass
        clus
vv       HEXDC MUTATED HEXDC WILD-TYPE
  CLUS_1             0              47
  CLUS_2             1              38
  CLUS_3             0              35
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(379) Variable = GRK4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRK4 MUTATED        0      3      0      1      0
  GRK4 WILD-TYPE     79    123     27     42     12
D379V1, multiclass
        clus
vv       GRK4 MUTATED GRK4 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            3            123
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRK4 MUTATED        0      5      0      0
  GRK4 WILD-TYPE     71     71     34     63
D379V2, multiclass
        clus
vv       GRK4 MUTATED GRK4 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            5             71
  CLUS_3            0             34
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRK4 MUTATED        0      2      1      0      0
  GRK4 WILD-TYPE     16     60     50     65     55
D379V3, multiclass
        clus
vv       GRK4 MUTATED GRK4 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            2             60
  CLUS_3            1             50
  CLUS_4            0             65
  CLUS_5            0             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRK4 MUTATED        0      3      0      0
  GRK4 WILD-TYPE     98     41     50     57
D379V4, multiclass
        clus
vv       GRK4 MUTATED GRK4 WILD-TYPE
  CLUS_1            0             98
  CLUS_2            3             41
  CLUS_3            0             50
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRK4 MUTATED        4      0      0      0      0
  GRK4 WILD-TYPE     58     59     40     37     59
D379V5, multiclass
        clus
vv       GRK4 MUTATED GRK4 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            0             37
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRK4 MUTATED        0      0      4
  GRK4 WILD-TYPE    106     54     93
D379V6, multiclass
        clus
vv       GRK4 MUTATED GRK4 WILD-TYPE
  CLUS_1            0            106
  CLUS_2            0             54
  CLUS_3            4             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRK4 MUTATED        5      0      0
  GRK4 WILD-TYPE    118     95     71
D379V7, multiclass
        clus
vv       GRK4 MUTATED GRK4 WILD-TYPE
  CLUS_1            5            118
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRK4 MUTATED        5      0      0
  GRK4 WILD-TYPE    152     63     69
D379V8, multiclass
        clus
vv       GRK4 MUTATED GRK4 WILD-TYPE
  CLUS_1            5            152
  CLUS_2            0             63
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GRK4 MUTATED        1      0      2      2      0      0
  GRK4 WILD-TYPE     32     19     57     37     16     45
D379V9, multiclass
        clus
vv       GRK4 MUTATED GRK4 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             19
  CLUS_3            2             57
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GRK4 MUTATED        4      0      1      0      0      0
  GRK4 WILD-TYPE     43     39     34     32     23     35
D379V10, multiclass
        clus
vv       GRK4 MUTATED GRK4 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            0             32
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(380) Variable = MYOCD MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYOCD MUTATED        0     13      0      0      0
  MYOCD WILD-TYPE     79    113     27     43     12
D380V1, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             0              79
  CLUS_2            13             113
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOCD MUTATED        1      6      3      2
  MYOCD WILD-TYPE     70     70     31     61
D380V2, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             1              70
  CLUS_2             6              70
  CLUS_3             3              31
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYOCD MUTATED        1      4      5      1      2
  MYOCD WILD-TYPE     15     58     46     64     53
D380V3, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             1              15
  CLUS_2             4              58
  CLUS_3             5              46
  CLUS_4             1              64
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOCD MUTATED        4      3      3      3
  MYOCD WILD-TYPE     94     41     47     54
D380V4, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             4              94
  CLUS_2             3              41
  CLUS_3             3              47
  CLUS_4             3              54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYOCD MUTATED        5      2      2      3      0
  MYOCD WILD-TYPE     57     57     38     34     59
D380V5, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             5              57
  CLUS_2             2              57
  CLUS_3             2              38
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYOCD MUTATED        6      2      4
  MYOCD WILD-TYPE    100     52     93
D380V6, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             6             100
  CLUS_2             2              52
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYOCD MUTATED        7      5      1
  MYOCD WILD-TYPE    116     90     70
D380V7, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             7             116
  CLUS_2             5              90
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYOCD MUTATED       10      1      2
  MYOCD WILD-TYPE    147     62     67
D380V8, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1            10             147
  CLUS_2             1              62
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MYOCD MUTATED        1      3      4      2      0      0
  MYOCD WILD-TYPE     32     16     55     37     16     45
D380V9, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             1              32
  CLUS_2             3              16
  CLUS_3             4              55
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MYOCD MUTATED        4      0      1      2      2      1
  MYOCD WILD-TYPE     43     39     34     30     21     34
D380V10, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             4              43
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             2              30
  CLUS_5             2              21
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(381) Variable = WHSC1L1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WHSC1L1 MUTATED        1     12      1      1      1
  WHSC1L1 WILD-TYPE     78    114     26     42     11
D381V1, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               1                78
  CLUS_2              12               114
  CLUS_3               1                26
  CLUS_4               1                42
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WHSC1L1 MUTATED        0      8      2      0
  WHSC1L1 WILD-TYPE     71     68     32     63
D381V2, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               8                68
  CLUS_3               2                32
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WHSC1L1 MUTATED        0      5      6      1      3
  WHSC1L1 WILD-TYPE     16     57     45     64     52
D381V3, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               5                57
  CLUS_3               6                45
  CLUS_4               1                64
  CLUS_5               3                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WHSC1L1 MUTATED        3      8      2      2
  WHSC1L1 WILD-TYPE     95     36     48     55
D381V4, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               3                95
  CLUS_2               8                36
  CLUS_3               2                48
  CLUS_4               2                55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WHSC1L1 MUTATED       10      3      0      2      1
  WHSC1L1 WILD-TYPE     52     56     40     35     58
D381V5, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1              10                52
  CLUS_2               3                56
  CLUS_3               0                40
  CLUS_4               2                35
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  WHSC1L1 MUTATED        4      2     10
  WHSC1L1 WILD-TYPE    102     52     87
D381V6, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               4               102
  CLUS_2               2                52
  CLUS_3              10                87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  WHSC1L1 MUTATED       12      1      3
  WHSC1L1 WILD-TYPE    111     94     68
D381V7, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1              12               111
  CLUS_2               1                94
  CLUS_3               3                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  WHSC1L1 MUTATED       13      1      2
  WHSC1L1 WILD-TYPE    144     62     67
D381V8, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1              13               144
  CLUS_2               1                62
  CLUS_3               2                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WHSC1L1 MUTATED        2      2      3      1      0      0
  WHSC1L1 WILD-TYPE     31     17     56     38     16     45
D381V9, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               2                17
  CLUS_3               3                56
  CLUS_4               1                38
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WHSC1L1 MUTATED        3      0      3      1      0      1
  WHSC1L1 WILD-TYPE     44     39     32     31     23     34
D381V10, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               3                44
  CLUS_2               0                39
  CLUS_3               3                32
  CLUS_4               1                31
  CLUS_5               0                23
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(382) Variable = STX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STX2 MUTATED        0      4      1      1      0
  STX2 WILD-TYPE     79    122     26     42     12
D382V1, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            4            122
  CLUS_3            1             26
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STX2 MUTATED        0      5      1      0
  STX2 WILD-TYPE     71     71     33     63
D382V2, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            5             71
  CLUS_3            1             33
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STX2 MUTATED        0      1      1      1      2
  STX2 WILD-TYPE     16     61     50     64     53
D382V3, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            1             61
  CLUS_3            1             50
  CLUS_4            1             64
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STX2 MUTATED        0      3      1      1
  STX2 WILD-TYPE     98     41     49     56
D382V4, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            0             98
  CLUS_2            3             41
  CLUS_3            1             49
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STX2 MUTATED        2      0      1      1      1
  STX2 WILD-TYPE     60     59     39     36     58
D382V5, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            2             60
  CLUS_2            0             59
  CLUS_3            1             39
  CLUS_4            1             36
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  STX2 MUTATED        1      0      4
  STX2 WILD-TYPE    105     54     93
D382V6, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            4             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  STX2 MUTATED        3      1      2
  STX2 WILD-TYPE    120     94     69
D382V7, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            3            120
  CLUS_2            1             94
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  STX2 MUTATED        5      1      0
  STX2 WILD-TYPE    152     62     69
D382V8, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            5            152
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STX2 MUTATED        2      1      1      1      0      1
  STX2 WILD-TYPE     31     18     58     38     16     44
D382V9, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             18
  CLUS_3            1             58
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STX2 MUTATED        3      1      1      1      0      0
  STX2 WILD-TYPE     44     38     34     31     23     35
D382V10, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            1             38
  CLUS_3            1             34
  CLUS_4            1             31
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(383) Variable = MGST2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MGST2 MUTATED        0      3      0      0      0
  MGST2 WILD-TYPE     79    123     27     43     12
D383V1, multiclass
        clus
vv       MGST2 MUTATED MGST2 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             3             123
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGST2 MUTATED        0      1      2      0
  MGST2 WILD-TYPE     71     75     32     63
D383V2, multiclass
        clus
vv       MGST2 MUTATED MGST2 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             1              75
  CLUS_3             2              32
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MGST2 MUTATED        0      1      1      0      0
  MGST2 WILD-TYPE     16     61     50     65     55
D383V3, multiclass
[1] "Remove cluster labels:" "MGST2 MUTATED"         
clus
  MGST2 MUTATED MGST2 WILD-TYPE 
              2             247 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6710 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-7196 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7715      TCGA-BR-7716 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8080      TCGA-BR-8081 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297      TCGA-BR-8360 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8380 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-BR-A4QL 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-A4MI      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4442      TCGA-CG-4443      TCGA-CG-4444 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4469      TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5723      TCGA-CG-5724 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT      TCGA-D7-A4YU 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7916      TCGA-FP-7998 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7136      TCGA-HJ-7597 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-8602      TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4GF 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGST2 MUTATED        0      1      1      0
  MGST2 WILD-TYPE     98     43     49     57
D383V4, multiclass
[1] "Remove cluster labels:" "MGST2 MUTATED"         
clus
  MGST2 MUTATED MGST2 WILD-TYPE 
              2             247 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6710 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-7196 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7715      TCGA-BR-7716 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8080      TCGA-BR-8081 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297      TCGA-BR-8360 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8380 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-BR-A4QL 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-A4MI      TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4442      TCGA-CG-4443      TCGA-CG-4444 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4469      TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5723      TCGA-CG-5724 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT      TCGA-D7-A4YU 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7916      TCGA-FP-7998 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7136      TCGA-HJ-7597 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-8602      TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4GF 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MGST2 MUTATED        3      0      0      0      0
  MGST2 WILD-TYPE     59     59     40     37     59
D383V5, multiclass
        clus
vv       MGST2 MUTATED MGST2 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MGST2 MUTATED        0      0      3
  MGST2 WILD-TYPE    106     54     94
D383V6, multiclass
        clus
vv       MGST2 MUTATED MGST2 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MGST2 MUTATED        3      0      0
  MGST2 WILD-TYPE    120     95     71
D383V7, multiclass
        clus
vv       MGST2 MUTATED MGST2 WILD-TYPE
  CLUS_1             3             120
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MGST2 MUTATED        3      0      0
  MGST2 WILD-TYPE    154     63     69
D383V8, multiclass
        clus
vv       MGST2 MUTATED MGST2 WILD-TYPE
  CLUS_1             3             154
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MGST2 MUTATED        0      0      1      1      0      0
  MGST2 WILD-TYPE     33     19     58     38     16     45
D383V9, multiclass
[1] "Remove cluster labels:" "MGST2 MUTATED"         
clus
  MGST2 MUTATED MGST2 WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7851 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8080 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297      TCGA-BR-8360 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J6      TCGA-BR-A4J7 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48C 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CG-4437 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717      TCGA-CG-5718 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-EQ-5647 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7998 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132      TCGA-HF-7136 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC      TCGA-HU-A4GD 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-IP-7968 
"MGST2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MGST2 MUTATED        0      0      1      0      1      0
  MGST2 WILD-TYPE     47     39     34     32     22     35
D383V10, multiclass
[1] "Remove cluster labels:" "MGST2 MUTATED"         
clus
  MGST2 MUTATED MGST2 WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7851 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8080 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297      TCGA-BR-8360 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J6      TCGA-BR-A4J7 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48C 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CG-4437 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717      TCGA-CG-5718 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-EQ-5647 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7998 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132      TCGA-HF-7136 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC      TCGA-HU-A4GD 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-IP-7968 
"MGST2 WILD-TYPE" 

Clustering(384) Variable = MTIF2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTIF2 MUTATED        0     12      1      1      0
  MTIF2 WILD-TYPE     79    114     26     42     12
D384V1, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             0              79
  CLUS_2            12             114
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTIF2 MUTATED        0      7      3      1
  MTIF2 WILD-TYPE     71     69     31     62
D384V2, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             7              69
  CLUS_3             3              31
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTIF2 MUTATED        1      4      3      0      4
  MTIF2 WILD-TYPE     15     58     48     65     51
D384V3, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             4              58
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTIF2 MUTATED        5      5      2      0
  MTIF2 WILD-TYPE     93     39     48     57
D384V4, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             5              93
  CLUS_2             5              39
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTIF2 MUTATED        6      1      2      3      0
  MTIF2 WILD-TYPE     56     58     38     34     59
D384V5, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             1              58
  CLUS_3             2              38
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTIF2 MUTATED        3      1      8
  MTIF2 WILD-TYPE    103     53     89
D384V6, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             1              53
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTIF2 MUTATED       11      3      0
  MTIF2 WILD-TYPE    112     92     71
D384V7, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1            11             112
  CLUS_2             3              92
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTIF2 MUTATED       11      2      1
  MTIF2 WILD-TYPE    146     61     68
D384V8, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1            11             146
  CLUS_2             2              61
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MTIF2 MUTATED        0      3      3      2      0      1
  MTIF2 WILD-TYPE     33     16     56     37     16     44
D384V9, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             3              16
  CLUS_3             3              56
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MTIF2 MUTATED        3      1      3      2      0      0
  MTIF2 WILD-TYPE     44     38     32     30     23     35
D384V10, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             2              30
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(385) Variable = TMEM41B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM41B MUTATED        0      3      0      1      0
  TMEM41B WILD-TYPE     79    123     27     42     12
D385V1, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               0                79
  CLUS_2               3               123
  CLUS_3               0                27
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM41B MUTATED        1      2      0      0
  TMEM41B WILD-TYPE     70     74     34     63
D385V2, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               1                70
  CLUS_2               2                74
  CLUS_3               0                34
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM41B MUTATED        0      1      2      0      1
  TMEM41B WILD-TYPE     16     61     49     65     54
D385V3, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               0                16
  CLUS_2               1                61
  CLUS_3               2                49
  CLUS_4               0                65
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM41B MUTATED        1      3      0      0
  TMEM41B WILD-TYPE     97     41     50     57
D385V4, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               1                97
  CLUS_2               3                41
  CLUS_3               0                50
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM41B MUTATED        0      0      0      1      0
  TMEM41B WILD-TYPE     62     59     40     36     59
D385V5, multiclass
[1] "Remove cluster labels:" "TMEM41B MUTATED"       
clus
  TMEM41B MUTATED TMEM41B WILD-TYPE 
                1               256 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-4187        TCGA-BR-4191 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-4201        TCGA-BR-4253        TCGA-BR-4255        TCGA-BR-4256 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-4257        TCGA-BR-4267        TCGA-BR-4279        TCGA-BR-4280 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-4292        TCGA-BR-4294        TCGA-BR-4357        TCGA-BR-4361 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-4362        TCGA-BR-4363        TCGA-BR-4366        TCGA-BR-4368 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-4369        TCGA-BR-4370        TCGA-BR-4371        TCGA-BR-6452 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-6453        TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-6565        TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-6707        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-7703        TCGA-BR-7707        TCGA-BR-7715        TCGA-BR-7716 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-7717        TCGA-BR-7722        TCGA-BR-7723        TCGA-BR-7851 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7958        TCGA-BR-7959 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8077        TCGA-BR-8078 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-8080        TCGA-BR-8081        TCGA-BR-8284        TCGA-BR-8286 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-8289        TCGA-BR-8291        TCGA-BR-8297        TCGA-BR-8361 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-8363        TCGA-BR-8364        TCGA-BR-8365        TCGA-BR-8366 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-8367        TCGA-BR-8368        TCGA-BR-8369        TCGA-BR-8371 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-8372        TCGA-BR-8373        TCGA-BR-8380        TCGA-BR-8381 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-8382        TCGA-BR-8384        TCGA-BR-8483        TCGA-BR-8484 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-8485        TCGA-BR-8486        TCGA-BR-8487        TCGA-BR-8588 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-8589        TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8680 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8686        TCGA-BR-8687 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-A44T        TCGA-BR-A452        TCGA-BR-A453        TCGA-BR-A4CR 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-A4CS        TCGA-BR-A4IU        TCGA-BR-A4IV        TCGA-BR-A4IY 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-A4IZ        TCGA-BR-A4J1        TCGA-BR-A4J2        TCGA-BR-A4J4 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-A4J6        TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-A4PE        TCGA-BR-A4PF        TCGA-BR-A4QI        TCGA-CD-5798 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CD-5799        TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5803 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8526 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CD-8528        TCGA-CD-8529        TCGA-CD-8530        TCGA-CD-8531 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CD-8532        TCGA-CD-8534        TCGA-CD-8535        TCGA-CD-8536 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CD-A486        TCGA-CD-A487        TCGA-CD-A489        TCGA-CD-A48C 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CD-A4MG        TCGA-CD-A4MH        TCGA-CD-A4MI        TCGA-CD-A4MJ 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CG-4301        TCGA-CG-4304        TCGA-CG-4305        TCGA-CG-4306 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CG-4436        TCGA-CG-4437        TCGA-CG-4438        TCGA-CG-4440 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CG-4441        TCGA-CG-4442        TCGA-CG-4443        TCGA-CG-4444 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CG-4449        TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CG-4469        TCGA-CG-4474        TCGA-CG-4475        TCGA-CG-4476 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CG-4477        TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CG-5720        TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CG-5724        TCGA-CG-5726        TCGA-CG-5732        TCGA-CG-5734 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-6518        TCGA-D7-6519 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522        TCGA-D7-6524 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527        TCGA-D7-6528 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-D7-6822        TCGA-D7-8570        TCGA-D7-8572        TCGA-D7-8573 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-D7-8574        TCGA-D7-8575        TCGA-D7-8576        TCGA-D7-8578 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-D7-8579        TCGA-D7-A4YT        TCGA-D7-A4YU        TCGA-D7-A4YV 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-D7-A4YX        TCGA-D7-A4YY        TCGA-D7-A4Z0        TCGA-EQ-8122 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-EQ-A4SO        TCGA-F1-6874        TCGA-F1-6875        TCGA-F1-A448 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-FP-7735        TCGA-FP-7829        TCGA-FP-7916        TCGA-FP-7998 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-FP-8099        TCGA-FP-8209        TCGA-FP-8210        TCGA-FP-8211 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-FP-8631        TCGA-FP-A4BE        TCGA-HF-7132        TCGA-HF-7133 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-HF-7136        TCGA-HU-8602        TCGA-HU-8604        TCGA-HU-8608 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-HU-8610        TCGA-HU-A4G2        TCGA-HU-A4G3        TCGA-HU-A4G6 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-HU-A4G8        TCGA-HU-A4G9        TCGA-HU-A4GC        TCGA-HU-A4GF 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-HU-A4GH        TCGA-HU-A4GN        TCGA-HU-A4GP        TCGA-HU-A4GT 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-HU-A4GU        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H0 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-HU-A4H2        TCGA-HU-A4H3        TCGA-HU-A4H4        TCGA-HU-A4H5 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-HU-A4H6        TCGA-HU-A4H8        TCGA-HU-A4HD        TCGA-IN-7806 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663        TCGA-IP-7968 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM41B MUTATED        0      0      1
  TMEM41B WILD-TYPE    106     54     96
D385V6, multiclass
[1] "Remove cluster labels:" "TMEM41B MUTATED"       
clus
  TMEM41B MUTATED TMEM41B WILD-TYPE 
                1               256 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-4187        TCGA-BR-4191 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-4201        TCGA-BR-4253        TCGA-BR-4255        TCGA-BR-4256 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-4257        TCGA-BR-4267        TCGA-BR-4279        TCGA-BR-4280 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-4292        TCGA-BR-4294        TCGA-BR-4357        TCGA-BR-4361 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-4362        TCGA-BR-4363        TCGA-BR-4366        TCGA-BR-4368 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-4369        TCGA-BR-4370        TCGA-BR-4371        TCGA-BR-6452 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-6453        TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-6565        TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-6707        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-7703        TCGA-BR-7707        TCGA-BR-7715        TCGA-BR-7716 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-7717        TCGA-BR-7722        TCGA-BR-7723        TCGA-BR-7851 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7958        TCGA-BR-7959 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8077        TCGA-BR-8078 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-8080        TCGA-BR-8081        TCGA-BR-8284        TCGA-BR-8286 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-8289        TCGA-BR-8291        TCGA-BR-8297        TCGA-BR-8361 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-8363        TCGA-BR-8364        TCGA-BR-8365        TCGA-BR-8366 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-8367        TCGA-BR-8368        TCGA-BR-8369        TCGA-BR-8371 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-8372        TCGA-BR-8373        TCGA-BR-8380        TCGA-BR-8381 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-8382        TCGA-BR-8384        TCGA-BR-8483        TCGA-BR-8484 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-8485        TCGA-BR-8486        TCGA-BR-8487        TCGA-BR-8588 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-8589        TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8680 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8686        TCGA-BR-8687 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-A44T        TCGA-BR-A452        TCGA-BR-A453        TCGA-BR-A4CR 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-A4CS        TCGA-BR-A4IU        TCGA-BR-A4IV        TCGA-BR-A4IY 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-A4IZ        TCGA-BR-A4J1        TCGA-BR-A4J2        TCGA-BR-A4J4 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-A4J6        TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-BR-A4PE        TCGA-BR-A4PF        TCGA-BR-A4QI        TCGA-CD-5798 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CD-5799        TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5803 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8526 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CD-8528        TCGA-CD-8529        TCGA-CD-8530        TCGA-CD-8531 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CD-8532        TCGA-CD-8534        TCGA-CD-8535        TCGA-CD-8536 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CD-A486        TCGA-CD-A487        TCGA-CD-A489        TCGA-CD-A48C 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CD-A4MG        TCGA-CD-A4MH        TCGA-CD-A4MI        TCGA-CD-A4MJ 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CG-4301        TCGA-CG-4304        TCGA-CG-4305        TCGA-CG-4306 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CG-4436        TCGA-CG-4437        TCGA-CG-4438        TCGA-CG-4440 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CG-4441        TCGA-CG-4442        TCGA-CG-4443        TCGA-CG-4444 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CG-4449        TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CG-4469        TCGA-CG-4474        TCGA-CG-4475        TCGA-CG-4476 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CG-4477        TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CG-5720        TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-CG-5724        TCGA-CG-5726        TCGA-CG-5732        TCGA-CG-5734 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-6518        TCGA-D7-6519 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522        TCGA-D7-6524 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527        TCGA-D7-6528 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-D7-6822        TCGA-D7-8570        TCGA-D7-8572        TCGA-D7-8573 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-D7-8574        TCGA-D7-8575        TCGA-D7-8576        TCGA-D7-8578 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-D7-8579        TCGA-D7-A4YT        TCGA-D7-A4YU        TCGA-D7-A4YV 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-D7-A4YX        TCGA-D7-A4YY        TCGA-D7-A4Z0        TCGA-EQ-8122 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-EQ-A4SO        TCGA-F1-6874        TCGA-F1-6875        TCGA-F1-A448 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-FP-7735        TCGA-FP-7829        TCGA-FP-7916        TCGA-FP-7998 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-FP-8099        TCGA-FP-8209        TCGA-FP-8210        TCGA-FP-8211 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-FP-8631        TCGA-FP-A4BE        TCGA-HF-7132        TCGA-HF-7133 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-HF-7136        TCGA-HU-8602        TCGA-HU-8604        TCGA-HU-8608 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-HU-8610        TCGA-HU-A4G2        TCGA-HU-A4G3        TCGA-HU-A4G6 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-HU-A4G8        TCGA-HU-A4G9        TCGA-HU-A4GC        TCGA-HU-A4GF 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-HU-A4GH        TCGA-HU-A4GN        TCGA-HU-A4GP        TCGA-HU-A4GT 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-HU-A4GU        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H0 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-HU-A4H2        TCGA-HU-A4H3        TCGA-HU-A4H4        TCGA-HU-A4H5 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-HU-A4H6        TCGA-HU-A4H8        TCGA-HU-A4HD        TCGA-IN-7806 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
       TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663        TCGA-IP-7968 
"TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" "TMEM41B WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM41B MUTATED        3      0      1
  TMEM41B WILD-TYPE    120     95     70
D385V7, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               3               120
  CLUS_2               0                95
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM41B MUTATED        3      0      1
  TMEM41B WILD-TYPE    154     63     68
D385V8, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               3               154
  CLUS_2               0                63
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM41B MUTATED        1      0      1      1      0      0
  TMEM41B WILD-TYPE     32     19     58     38     16     45
D385V9, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                19
  CLUS_3               1                58
  CLUS_4               1                38
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM41B MUTATED        2      0      0      0      0      1
  TMEM41B WILD-TYPE     45     39     35     32     23     34
D385V10, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               2                45
  CLUS_2               0                39
  CLUS_3               0                35
  CLUS_4               0                32
  CLUS_5               0                23
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(386) Variable = ARHGEF5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGEF5 MUTATED        0      5      0      0      0
  ARHGEF5 WILD-TYPE     79    121     27     43     12
D386V1, multiclass
        clus
vv       ARHGEF5 MUTATED ARHGEF5 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               5               121
  CLUS_3               0                27
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF5 MUTATED        0      2      1      0
  ARHGEF5 WILD-TYPE     71     74     33     63
D386V2, multiclass
        clus
vv       ARHGEF5 MUTATED ARHGEF5 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               2                74
  CLUS_3               1                33
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGEF5 MUTATED        0      1      2      1      1
  ARHGEF5 WILD-TYPE     16     61     49     64     54
D386V3, multiclass
        clus
vv       ARHGEF5 MUTATED ARHGEF5 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               1                61
  CLUS_3               2                49
  CLUS_4               1                64
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF5 MUTATED        2      2      0      1
  ARHGEF5 WILD-TYPE     96     42     50     56
D386V4, multiclass
        clus
vv       ARHGEF5 MUTATED ARHGEF5 WILD-TYPE
  CLUS_1               2                96
  CLUS_2               2                42
  CLUS_3               0                50
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGEF5 MUTATED        2      1      1      1      0
  ARHGEF5 WILD-TYPE     60     58     39     36     59
D386V5, multiclass
        clus
vv       ARHGEF5 MUTATED ARHGEF5 WILD-TYPE
  CLUS_1               2                60
  CLUS_2               1                58
  CLUS_3               1                39
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF5 MUTATED        1      1      3
  ARHGEF5 WILD-TYPE    105     53     94
D386V6, multiclass
        clus
vv       ARHGEF5 MUTATED ARHGEF5 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               1                53
  CLUS_3               3                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF5 MUTATED        4      1      0
  ARHGEF5 WILD-TYPE    119     94     71
D386V7, multiclass
        clus
vv       ARHGEF5 MUTATED ARHGEF5 WILD-TYPE
  CLUS_1               4               119
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF5 MUTATED        4      1      0
  ARHGEF5 WILD-TYPE    153     62     69
D386V8, multiclass
        clus
vv       ARHGEF5 MUTATED ARHGEF5 WILD-TYPE
  CLUS_1               4               153
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARHGEF5 MUTATED        0      0      1      1      0      0
  ARHGEF5 WILD-TYPE     33     19     58     38     16     45
D386V9, multiclass
[1] "Remove cluster labels:" "ARHGEF5 MUTATED"       
clus
  ARHGEF5 MUTATED ARHGEF5 WILD-TYPE 
                2               209 
       TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6453        TCGA-BR-6454 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457        TCGA-BR-6458 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565        TCGA-BR-6566 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707        TCGA-BR-6710 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803        TCGA-BR-6852 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703        TCGA-BR-7707 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-7715        TCGA-BR-7717        TCGA-BR-7723        TCGA-BR-7851 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7958        TCGA-BR-7959 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8077        TCGA-BR-8078 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-8080        TCGA-BR-8284        TCGA-BR-8286        TCGA-BR-8289 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8296        TCGA-BR-8297 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-8360        TCGA-BR-8361        TCGA-BR-8363        TCGA-BR-8364 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-8365        TCGA-BR-8368        TCGA-BR-8369        TCGA-BR-8370 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8373        TCGA-BR-8380 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-8381        TCGA-BR-8382        TCGA-BR-8384        TCGA-BR-8483 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-8485        TCGA-BR-8486        TCGA-BR-8487        TCGA-BR-8588 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8680 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8687        TCGA-BR-8690 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-A44T        TCGA-BR-A452        TCGA-BR-A453        TCGA-BR-A4CQ 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU        TCGA-BR-A4IV 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1        TCGA-BR-A4J6 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4QI 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-A4QL        TCGA-BR-A4QM        TCGA-CD-5798        TCGA-CD-5799 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8525 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8529        TCGA-CD-8530 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-CD-8531        TCGA-CD-8532        TCGA-CD-8534        TCGA-CD-8535 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487        TCGA-CD-A489 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-CD-A48C        TCGA-CD-A4MG        TCGA-CD-A4MH        TCGA-CD-A4MI 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-CG-4437        TCGA-CG-4441        TCGA-CG-4449        TCGA-CG-5717 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5726 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-CG-5727        TCGA-CG-5728        TCGA-CG-5730        TCGA-CG-5732 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-CG-5733        TCGA-CG-5734        TCGA-D7-5577        TCGA-D7-5578 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-D7-5579        TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-D7-6521        TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-D7-6526        TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-D7-8570        TCGA-D7-8572        TCGA-D7-8574        TCGA-D7-8575 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-D7-8576        TCGA-D7-8578        TCGA-D7-8579        TCGA-D7-A4YT 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-D7-A4YU        TCGA-D7-A4YV        TCGA-D7-A4YY        TCGA-D7-A4Z0 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-EQ-5647        TCGA-EQ-8122        TCGA-F1-6177        TCGA-F1-6874 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-F1-6875        TCGA-F1-A448        TCGA-FP-7735        TCGA-FP-7829 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-FP-7998        TCGA-FP-8099        TCGA-FP-8209        TCGA-FP-8210 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-FP-8211        TCGA-FP-8631        TCGA-FP-A4BE        TCGA-HF-7136 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-HU-8243        TCGA-HU-8602        TCGA-HU-8604        TCGA-HU-8608 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-HU-A4G3        TCGA-HU-A4G8        TCGA-HU-A4GC        TCGA-HU-A4GD 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GN        TCGA-HU-A4GQ 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-HU-A4GT        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H2 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4H6        TCGA-HU-A4H8 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-IP-7968 
"ARHGEF5 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARHGEF5 MUTATED        0      0      1      1      0      0
  ARHGEF5 WILD-TYPE     47     39     34     31     23     35
D386V10, multiclass
[1] "Remove cluster labels:" "ARHGEF5 MUTATED"       
clus
  ARHGEF5 MUTATED ARHGEF5 WILD-TYPE 
                2               209 
       TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6453        TCGA-BR-6454 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457        TCGA-BR-6458 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565        TCGA-BR-6566 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707        TCGA-BR-6710 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803        TCGA-BR-6852 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703        TCGA-BR-7707 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-7715        TCGA-BR-7717        TCGA-BR-7723        TCGA-BR-7851 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7958        TCGA-BR-7959 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8077        TCGA-BR-8078 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-8080        TCGA-BR-8284        TCGA-BR-8286        TCGA-BR-8289 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8296        TCGA-BR-8297 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-8360        TCGA-BR-8361        TCGA-BR-8363        TCGA-BR-8364 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-8365        TCGA-BR-8368        TCGA-BR-8369        TCGA-BR-8370 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8373        TCGA-BR-8380 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-8381        TCGA-BR-8382        TCGA-BR-8384        TCGA-BR-8483 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-8485        TCGA-BR-8486        TCGA-BR-8487        TCGA-BR-8588 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8680 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8687        TCGA-BR-8690 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-A44T        TCGA-BR-A452        TCGA-BR-A453        TCGA-BR-A4CQ 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU        TCGA-BR-A4IV 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1        TCGA-BR-A4J6 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4QI 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-BR-A4QL        TCGA-BR-A4QM        TCGA-CD-5798        TCGA-CD-5799 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8525 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8529        TCGA-CD-8530 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-CD-8531        TCGA-CD-8532        TCGA-CD-8534        TCGA-CD-8535 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487        TCGA-CD-A489 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-CD-A48C        TCGA-CD-A4MG        TCGA-CD-A4MH        TCGA-CD-A4MI 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-CG-4437        TCGA-CG-4441        TCGA-CG-4449        TCGA-CG-5717 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5726 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-CG-5727        TCGA-CG-5728        TCGA-CG-5730        TCGA-CG-5732 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-CG-5733        TCGA-CG-5734        TCGA-D7-5577        TCGA-D7-5578 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-D7-5579        TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-D7-6521        TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-D7-6526        TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-D7-8570        TCGA-D7-8572        TCGA-D7-8574        TCGA-D7-8575 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-D7-8576        TCGA-D7-8578        TCGA-D7-8579        TCGA-D7-A4YT 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-D7-A4YU        TCGA-D7-A4YV        TCGA-D7-A4YY        TCGA-D7-A4Z0 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-EQ-5647        TCGA-EQ-8122        TCGA-F1-6177        TCGA-F1-6874 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-F1-6875        TCGA-F1-A448        TCGA-FP-7735        TCGA-FP-7829 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-FP-7998        TCGA-FP-8099        TCGA-FP-8209        TCGA-FP-8210 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-FP-8211        TCGA-FP-8631        TCGA-FP-A4BE        TCGA-HF-7136 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-HU-8243        TCGA-HU-8602        TCGA-HU-8604        TCGA-HU-8608 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-HU-A4G3        TCGA-HU-A4G8        TCGA-HU-A4GC        TCGA-HU-A4GD 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GN        TCGA-HU-A4GQ 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-HU-A4GT        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H2 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4H6        TCGA-HU-A4H8 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" "ARHGEF5 WILD-TYPE" 
       TCGA-IP-7968 
"ARHGEF5 WILD-TYPE" 

Clustering(387) Variable = BEST3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BEST3 MUTATED        3      5      2      0      0
  BEST3 WILD-TYPE     76    121     25     43     12
D387V1, multiclass
        clus
vv       BEST3 MUTATED BEST3 WILD-TYPE
  CLUS_1             3              76
  CLUS_2             5             121
  CLUS_3             2              25
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BEST3 MUTATED        1      1      1      2
  BEST3 WILD-TYPE     70     75     33     61
D387V2, multiclass
        clus
vv       BEST3 MUTATED BEST3 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             1              75
  CLUS_3             1              33
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BEST3 MUTATED        0      2      4      1      1
  BEST3 WILD-TYPE     16     60     47     64     54
D387V3, multiclass
        clus
vv       BEST3 MUTATED BEST3 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             4              47
  CLUS_4             1              64
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BEST3 MUTATED        4      3      0      1
  BEST3 WILD-TYPE     94     41     50     56
D387V4, multiclass
        clus
vv       BEST3 MUTATED BEST3 WILD-TYPE
  CLUS_1             4              94
  CLUS_2             3              41
  CLUS_3             0              50
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BEST3 MUTATED        1      1      0      2      3
  BEST3 WILD-TYPE     61     58     40     35     56
D387V5, multiclass
        clus
vv       BEST3 MUTATED BEST3 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             2              35
  CLUS_5             3              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BEST3 MUTATED        2      1      4
  BEST3 WILD-TYPE    104     53     93
D387V6, multiclass
        clus
vv       BEST3 MUTATED BEST3 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              53
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BEST3 MUTATED        6      2      2
  BEST3 WILD-TYPE    117     93     69
D387V7, multiclass
        clus
vv       BEST3 MUTATED BEST3 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             2              93
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BEST3 MUTATED        6      2      2
  BEST3 WILD-TYPE    151     61     67
D387V8, multiclass
        clus
vv       BEST3 MUTATED BEST3 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             2              61
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BEST3 MUTATED        1      1      1      0      0      2
  BEST3 WILD-TYPE     32     18     58     39     16     43
D387V9, multiclass
        clus
vv       BEST3 MUTATED BEST3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             1              58
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             2              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BEST3 MUTATED        2      2      0      0      0      1
  BEST3 WILD-TYPE     45     37     35     32     23     34
D387V10, multiclass
        clus
vv       BEST3 MUTATED BEST3 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             2              37
  CLUS_3             0              35
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(388) Variable = BMPR1B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BMPR1B MUTATED        0      4      0      1      2
  BMPR1B WILD-TYPE     79    122     27     42     10
D388V1, multiclass
        clus
vv       BMPR1B MUTATED BMPR1B WILD-TYPE
  CLUS_1              0               79
  CLUS_2              4              122
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              2               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMPR1B MUTATED        0      3      2      0
  BMPR1B WILD-TYPE     71     73     32     63
D388V2, multiclass
        clus
vv       BMPR1B MUTATED BMPR1B WILD-TYPE
  CLUS_1              0               71
  CLUS_2              3               73
  CLUS_3              2               32
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BMPR1B MUTATED        0      1      2      1      1
  BMPR1B WILD-TYPE     16     61     49     64     54
D388V3, multiclass
        clus
vv       BMPR1B MUTATED BMPR1B WILD-TYPE
  CLUS_1              0               16
  CLUS_2              1               61
  CLUS_3              2               49
  CLUS_4              1               64
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMPR1B MUTATED        1      1      1      2
  BMPR1B WILD-TYPE     97     43     49     55
D388V4, multiclass
        clus
vv       BMPR1B MUTATED BMPR1B WILD-TYPE
  CLUS_1              1               97
  CLUS_2              1               43
  CLUS_3              1               49
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BMPR1B MUTATED        3      1      1      2      0
  BMPR1B WILD-TYPE     59     58     39     35     59
D388V5, multiclass
        clus
vv       BMPR1B MUTATED BMPR1B WILD-TYPE
  CLUS_1              3               59
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              2               35
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BMPR1B MUTATED        2      0      5
  BMPR1B WILD-TYPE    104     54     92
D388V6, multiclass
        clus
vv       BMPR1B MUTATED BMPR1B WILD-TYPE
  CLUS_1              2              104
  CLUS_2              0               54
  CLUS_3              5               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BMPR1B MUTATED        5      1      1
  BMPR1B WILD-TYPE    118     94     70
D388V7, multiclass
        clus
vv       BMPR1B MUTATED BMPR1B WILD-TYPE
  CLUS_1              5              118
  CLUS_2              1               94
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BMPR1B MUTATED        7      0      0
  BMPR1B WILD-TYPE    150     63     69
D388V8, multiclass
        clus
vv       BMPR1B MUTATED BMPR1B WILD-TYPE
  CLUS_1              7              150
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BMPR1B MUTATED        0      0      1      2      0      0
  BMPR1B WILD-TYPE     33     19     58     37     16     45
D388V9, multiclass
        clus
vv       BMPR1B MUTATED BMPR1B WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               19
  CLUS_3              1               58
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BMPR1B MUTATED        1      0      0      0      2      0
  BMPR1B WILD-TYPE     46     39     35     32     21     35
D388V10, multiclass
        clus
vv       BMPR1B MUTATED BMPR1B WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               39
  CLUS_3              0               35
  CLUS_4              0               32
  CLUS_5              2               21
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(389) Variable = PKN2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PKN2 MUTATED        0      9      0      1      0
  PKN2 WILD-TYPE     79    117     27     42     12
D389V1, multiclass
        clus
vv       PKN2 MUTATED PKN2 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            9            117
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKN2 MUTATED        0      7      0      2
  PKN2 WILD-TYPE     71     69     34     61
D389V2, multiclass
        clus
vv       PKN2 MUTATED PKN2 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            7             69
  CLUS_3            0             34
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PKN2 MUTATED        0      2      2      2      2
  PKN2 WILD-TYPE     16     60     49     63     53
D389V3, multiclass
        clus
vv       PKN2 MUTATED PKN2 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            2             60
  CLUS_3            2             49
  CLUS_4            2             63
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKN2 MUTATED        1      4      1      2
  PKN2 WILD-TYPE     97     40     49     55
D389V4, multiclass
        clus
vv       PKN2 MUTATED PKN2 WILD-TYPE
  CLUS_1            1             97
  CLUS_2            4             40
  CLUS_3            1             49
  CLUS_4            2             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PKN2 MUTATED        5      1      0      2      0
  PKN2 WILD-TYPE     57     58     40     35     59
D389V5, multiclass
        clus
vv       PKN2 MUTATED PKN2 WILD-TYPE
  CLUS_1            5             57
  CLUS_2            1             58
  CLUS_3            0             40
  CLUS_4            2             35
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PKN2 MUTATED        0      2      6
  PKN2 WILD-TYPE    106     52     91
D389V6, multiclass
        clus
vv       PKN2 MUTATED PKN2 WILD-TYPE
  CLUS_1            0            106
  CLUS_2            2             52
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PKN2 MUTATED        8      2      0
  PKN2 WILD-TYPE    115     93     71
D389V7, multiclass
        clus
vv       PKN2 MUTATED PKN2 WILD-TYPE
  CLUS_1            8            115
  CLUS_2            2             93
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PKN2 MUTATED        7      3      0
  PKN2 WILD-TYPE    150     60     69
D389V8, multiclass
        clus
vv       PKN2 MUTATED PKN2 WILD-TYPE
  CLUS_1            7            150
  CLUS_2            3             60
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PKN2 MUTATED        3      1      2      1      0      1
  PKN2 WILD-TYPE     30     18     57     38     16     44
D389V9, multiclass
        clus
vv       PKN2 MUTATED PKN2 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            1             18
  CLUS_3            2             57
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PKN2 MUTATED        4      1      2      1      0      0
  PKN2 WILD-TYPE     43     38     33     31     23     35
D389V10, multiclass
        clus
vv       PKN2 MUTATED PKN2 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            1             38
  CLUS_3            2             33
  CLUS_4            1             31
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(390) Variable = KIRREL2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIRREL2 MUTATED        1     10      1      0      0
  KIRREL2 WILD-TYPE     78    116     26     43     12
D390V1, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               1                78
  CLUS_2              10               116
  CLUS_3               1                26
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL2 MUTATED        1      8      1      1
  KIRREL2 WILD-TYPE     70     68     33     62
D390V2, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               8                68
  CLUS_3               1                33
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIRREL2 MUTATED        1      3      1      0      4
  KIRREL2 WILD-TYPE     15     59     50     65     51
D390V3, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               3                59
  CLUS_3               1                50
  CLUS_4               0                65
  CLUS_5               4                51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL2 MUTATED        3      5      1      0
  KIRREL2 WILD-TYPE     95     39     49     57
D390V4, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               3                95
  CLUS_2               5                39
  CLUS_3               1                49
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIRREL2 MUTATED        4      1      1      4      1
  KIRREL2 WILD-TYPE     58     58     39     33     58
D390V5, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               4                58
  CLUS_2               1                58
  CLUS_3               1                39
  CLUS_4               4                33
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  KIRREL2 MUTATED        3      0      8
  KIRREL2 WILD-TYPE    103     54     89
D390V6, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               3               103
  CLUS_2               0                54
  CLUS_3               8                89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  KIRREL2 MUTATED       10      2      0
  KIRREL2 WILD-TYPE    113     93     71
D390V7, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1              10               113
  CLUS_2               2                93
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  KIRREL2 MUTATED       10      2      0
  KIRREL2 WILD-TYPE    147     61     69
D390V8, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1              10               147
  CLUS_2               2                61
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIRREL2 MUTATED        2      2      3      3      0      0
  KIRREL2 WILD-TYPE     31     17     56     36     16     45
D390V9, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               2                17
  CLUS_3               3                56
  CLUS_4               3                36
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIRREL2 MUTATED        6      0      2      2      0      0
  KIRREL2 WILD-TYPE     41     39     33     30     23     35
D390V10, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               6                41
  CLUS_2               0                39
  CLUS_3               2                33
  CLUS_4               2                30
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(391) Variable = ANKRD40 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD40 MUTATED        0      3      1      1      0
  ANKRD40 WILD-TYPE     79    123     26     42     12
D391V1, multiclass
        clus
vv       ANKRD40 MUTATED ANKRD40 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               3               123
  CLUS_3               1                26
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD40 MUTATED        0      2      1      1
  ANKRD40 WILD-TYPE     71     74     33     62
D391V2, multiclass
        clus
vv       ANKRD40 MUTATED ANKRD40 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               2                74
  CLUS_3               1                33
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD40 MUTATED        0      3      0      0      1
  ANKRD40 WILD-TYPE     16     59     51     65     54
D391V3, multiclass
        clus
vv       ANKRD40 MUTATED ANKRD40 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               3                59
  CLUS_3               0                51
  CLUS_4               0                65
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD40 MUTATED        0      1      2      1
  ANKRD40 WILD-TYPE     98     43     48     56
D391V4, multiclass
        clus
vv       ANKRD40 MUTATED ANKRD40 WILD-TYPE
  CLUS_1               0                98
  CLUS_2               1                43
  CLUS_3               2                48
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD40 MUTATED        4      1      0      0      0
  ANKRD40 WILD-TYPE     58     58     40     37     59
D391V5, multiclass
        clus
vv       ANKRD40 MUTATED ANKRD40 WILD-TYPE
  CLUS_1               4                58
  CLUS_2               1                58
  CLUS_3               0                40
  CLUS_4               0                37
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD40 MUTATED        1      1      3
  ANKRD40 WILD-TYPE    105     53     94
D391V6, multiclass
        clus
vv       ANKRD40 MUTATED ANKRD40 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               1                53
  CLUS_3               3                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD40 MUTATED        4      1      0
  ANKRD40 WILD-TYPE    119     94     71
D391V7, multiclass
        clus
vv       ANKRD40 MUTATED ANKRD40 WILD-TYPE
  CLUS_1               4               119
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD40 MUTATED        4      1      0
  ANKRD40 WILD-TYPE    153     62     69
D391V8, multiclass
        clus
vv       ANKRD40 MUTATED ANKRD40 WILD-TYPE
  CLUS_1               4               153
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ANKRD40 MUTATED        0      1      0      2      0      1
  ANKRD40 WILD-TYPE     33     18     59     37     16     44
D391V9, multiclass
        clus
vv       ANKRD40 MUTATED ANKRD40 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                18
  CLUS_3               0                59
  CLUS_4               2                37
  CLUS_5               0                16
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ANKRD40 MUTATED        2      1      0      0      1      0
  ANKRD40 WILD-TYPE     45     38     35     32     22     35
D391V10, multiclass
        clus
vv       ANKRD40 MUTATED ANKRD40 WILD-TYPE
  CLUS_1               2                45
  CLUS_2               1                38
  CLUS_3               0                35
  CLUS_4               0                32
  CLUS_5               1                22
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(392) Variable = CHST15 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHST15 MUTATED        1     10      2      0      0
  CHST15 WILD-TYPE     78    116     25     43     12
D392V1, multiclass
        clus
vv       CHST15 MUTATED CHST15 WILD-TYPE
  CLUS_1              1               78
  CLUS_2             10              116
  CLUS_3              2               25
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHST15 MUTATED        0      6      3      0
  CHST15 WILD-TYPE     71     70     31     63
D392V2, multiclass
        clus
vv       CHST15 MUTATED CHST15 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              6               70
  CLUS_3              3               31
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHST15 MUTATED        2      6      1      0      3
  CHST15 WILD-TYPE     14     56     50     65     52
D392V3, multiclass
        clus
vv       CHST15 MUTATED CHST15 WILD-TYPE
  CLUS_1              2               14
  CLUS_2              6               56
  CLUS_3              1               50
  CLUS_4              0               65
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHST15 MUTATED        4      6      2      0
  CHST15 WILD-TYPE     94     38     48     57
D392V4, multiclass
        clus
vv       CHST15 MUTATED CHST15 WILD-TYPE
  CLUS_1              4               94
  CLUS_2              6               38
  CLUS_3              2               48
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHST15 MUTATED        6      0      3      1      0
  CHST15 WILD-TYPE     56     59     37     36     59
D392V5, multiclass
        clus
vv       CHST15 MUTATED CHST15 WILD-TYPE
  CLUS_1              6               56
  CLUS_2              0               59
  CLUS_3              3               37
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHST15 MUTATED        2      0      8
  CHST15 WILD-TYPE    104     54     89
D392V6, multiclass
        clus
vv       CHST15 MUTATED CHST15 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              0               54
  CLUS_3              8               89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHST15 MUTATED       10      1      2
  CHST15 WILD-TYPE    113     94     69
D392V7, multiclass
        clus
vv       CHST15 MUTATED CHST15 WILD-TYPE
  CLUS_1             10              113
  CLUS_2              1               94
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHST15 MUTATED       11      1      1
  CHST15 WILD-TYPE    146     62     68
D392V8, multiclass
        clus
vv       CHST15 MUTATED CHST15 WILD-TYPE
  CLUS_1             11              146
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CHST15 MUTATED        0      0      3      4      0      1
  CHST15 WILD-TYPE     33     19     56     35     16     44
D392V9, multiclass
        clus
vv       CHST15 MUTATED CHST15 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               19
  CLUS_3              3               56
  CLUS_4              4               35
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CHST15 MUTATED        3      1      2      1      1      0
  CHST15 WILD-TYPE     44     38     33     31     22     35
D392V10, multiclass
        clus
vv       CHST15 MUTATED CHST15 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              1               38
  CLUS_3              2               33
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(393) Variable = YIF1A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YIF1A MUTATED        0      3      0      0      0
  YIF1A WILD-TYPE     79    123     27     43     12
D393V1, multiclass
        clus
vv       YIF1A MUTATED YIF1A WILD-TYPE
  CLUS_1             0              79
  CLUS_2             3             123
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YIF1A MUTATED        0      1      0      0
  YIF1A WILD-TYPE     71     75     34     63
D393V2, multiclass
[1] "Remove cluster labels:" "YIF1A MUTATED"         
clus
  YIF1A MUTATED YIF1A WILD-TYPE 
              1             243 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8589 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J6      TCGA-BR-A4J7 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-5717      TCGA-CG-5718 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-EQ-5647      TCGA-EQ-8122      TCGA-EQ-A4SO 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-FP-8631      TCGA-FP-A4BE      TCGA-FP-A4BF      TCGA-HF-7132 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-HF-7133      TCGA-HF-7136      TCGA-HJ-7597      TCGA-HU-8243 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-HU-8245      TCGA-HU-8249      TCGA-HU-8602      TCGA-HU-8604 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4G3 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-HU-A4G6      TCGA-HU-A4G8      TCGA-HU-A4G9      TCGA-HU-A4GC 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H0      TCGA-HU-A4H2 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-HU-A4H8      TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YIF1A MUTATED        0      2      0      0      1
  YIF1A WILD-TYPE     16     60     51     65     54
D393V3, multiclass
        clus
vv       YIF1A MUTATED YIF1A WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             0              51
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YIF1A MUTATED        0      2      1      0
  YIF1A WILD-TYPE     98     42     49     57
D393V4, multiclass
        clus
vv       YIF1A MUTATED YIF1A WILD-TYPE
  CLUS_1             0              98
  CLUS_2             2              42
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YIF1A MUTATED        2      0      0      1      0
  YIF1A WILD-TYPE     60     59     40     36     59
D393V5, multiclass
        clus
vv       YIF1A MUTATED YIF1A WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YIF1A MUTATED        0      0      3
  YIF1A WILD-TYPE    106     54     94
D393V6, multiclass
        clus
vv       YIF1A MUTATED YIF1A WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YIF1A MUTATED        2      1      0
  YIF1A WILD-TYPE    121     94     71
D393V7, multiclass
        clus
vv       YIF1A MUTATED YIF1A WILD-TYPE
  CLUS_1             2             121
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YIF1A MUTATED        3      0      0
  YIF1A WILD-TYPE    154     63     69
D393V8, multiclass
        clus
vv       YIF1A MUTATED YIF1A WILD-TYPE
  CLUS_1             3             154
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  YIF1A MUTATED        0      0      0      1      0      0
  YIF1A WILD-TYPE     33     19     59     38     16     45
D393V9, multiclass
[1] "Remove cluster labels:" "YIF1A MUTATED"         
clus
  YIF1A MUTATED YIF1A WILD-TYPE 
              1             210 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8592      TCGA-BR-8676 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J6 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-HF-7136      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-HU-A4H2      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-HU-A4H8      TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-IN-8663      TCGA-IP-7968 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  YIF1A MUTATED        0      0      0      0      1      0
  YIF1A WILD-TYPE     47     39     35     32     22     35
D393V10, multiclass
[1] "Remove cluster labels:" "YIF1A MUTATED"         
clus
  YIF1A MUTATED YIF1A WILD-TYPE 
              1             210 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8592      TCGA-BR-8676 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J6 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-HF-7136      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-HU-A4H2      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-HU-A4H8      TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 
     TCGA-IN-8663      TCGA-IP-7968 
"YIF1A WILD-TYPE" "YIF1A WILD-TYPE" 

Clustering(394) Variable = OLFML3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OLFML3 MUTATED        0      4      0      0      0
  OLFML3 WILD-TYPE     79    122     27     43     12
D394V1, multiclass
        clus
vv       OLFML3 MUTATED OLFML3 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              4              122
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OLFML3 MUTATED        0      2      0      1
  OLFML3 WILD-TYPE     71     74     34     62
D394V2, multiclass
        clus
vv       OLFML3 MUTATED OLFML3 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              2               74
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OLFML3 MUTATED        0      2      0      0      1
  OLFML3 WILD-TYPE     16     60     51     65     54
D394V3, multiclass
        clus
vv       OLFML3 MUTATED OLFML3 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              2               60
  CLUS_3              0               51
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OLFML3 MUTATED        1      2      0      0
  OLFML3 WILD-TYPE     97     42     50     57
D394V4, multiclass
        clus
vv       OLFML3 MUTATED OLFML3 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              2               42
  CLUS_3              0               50
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OLFML3 MUTATED        0      0      0      1      0
  OLFML3 WILD-TYPE     62     59     40     36     59
D394V5, multiclass
[1] "Remove cluster labels:" "OLFML3 MUTATED"        
clus
  OLFML3 MUTATED OLFML3 WILD-TYPE 
               1              256 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4187       TCGA-BR-4191 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-4201       TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-4257       TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-4292       TCGA-BR-4294       TCGA-BR-4357       TCGA-BR-4361 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-4362       TCGA-BR-4363       TCGA-BR-4366       TCGA-BR-4368 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-4369       TCGA-BR-4370       TCGA-BR-4371       TCGA-BR-6452 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-6453       TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-6565       TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-6707       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-7703       TCGA-BR-7707       TCGA-BR-7715       TCGA-BR-7716 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723       TCGA-BR-7851 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8077       TCGA-BR-8078 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284       TCGA-BR-8286 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8289       TCGA-BR-8291       TCGA-BR-8297       TCGA-BR-8361 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365       TCGA-BR-8366 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8367       TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8371 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8372       TCGA-BR-8373       TCGA-BR-8380       TCGA-BR-8381 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483       TCGA-BR-8484 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8487       TCGA-BR-8588 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8589       TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8686       TCGA-BR-8687 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-A44T       TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CR 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J2       TCGA-BR-A4J4 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-A4PE       TCGA-BR-A4PF       TCGA-BR-A4QI       TCGA-CD-5798 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-5799       TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5803 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8526 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-8528       TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-8532       TCGA-CD-8534       TCGA-CD-8535       TCGA-CD-8536 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489       TCGA-CD-A48C 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI       TCGA-CD-A4MJ 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4442       TCGA-CG-4443       TCGA-CG-4444 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-4449       TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-4469       TCGA-CG-4474       TCGA-CG-4475       TCGA-CG-4476 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5732       TCGA-CG-5734 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-6518       TCGA-D7-6519 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8573 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8576       TCGA-D7-8578 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-8579       TCGA-D7-A4YT       TCGA-D7-A4YU       TCGA-D7-A4YV 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-A4YX       TCGA-D7-A4YY       TCGA-D7-A4Z0       TCGA-EQ-8122 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-EQ-A4SO       TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-F1-A448       TCGA-FP-7735       TCGA-FP-7829       TCGA-FP-7916 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-FP-7998       TCGA-FP-8099       TCGA-FP-8209       TCGA-FP-8210 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-FP-8211       TCGA-FP-8631       TCGA-FP-A4BE       TCGA-HF-7132 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HF-7133       TCGA-HF-7136       TCGA-HU-8602       TCGA-HU-8604 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HU-8608       TCGA-HU-8610       TCGA-HU-A4G2       TCGA-HU-A4G3 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HU-A4G6       TCGA-HU-A4G8       TCGA-HU-A4G9       TCGA-HU-A4GC 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GN       TCGA-HU-A4GP 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HU-A4GT       TCGA-HU-A4GU       TCGA-HU-A4GX       TCGA-HU-A4GY 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HU-A4H0       TCGA-HU-A4H2       TCGA-HU-A4H3       TCGA-HU-A4H4 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HU-A4H5       TCGA-HU-A4H6       TCGA-HU-A4HD       TCGA-IN-7806 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663       TCGA-IP-7968 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OLFML3 MUTATED        0      0      1
  OLFML3 WILD-TYPE    106     54     96
D394V6, multiclass
[1] "Remove cluster labels:" "OLFML3 MUTATED"        
clus
  OLFML3 MUTATED OLFML3 WILD-TYPE 
               1              256 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4187       TCGA-BR-4191 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-4201       TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-4257       TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-4292       TCGA-BR-4294       TCGA-BR-4357       TCGA-BR-4361 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-4362       TCGA-BR-4363       TCGA-BR-4366       TCGA-BR-4368 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-4369       TCGA-BR-4370       TCGA-BR-4371       TCGA-BR-6452 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-6453       TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-6457       TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-6565       TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-6707       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-7703       TCGA-BR-7707       TCGA-BR-7715       TCGA-BR-7716 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723       TCGA-BR-7851 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8077       TCGA-BR-8078 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284       TCGA-BR-8286 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8289       TCGA-BR-8291       TCGA-BR-8297       TCGA-BR-8361 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365       TCGA-BR-8366 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8367       TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8371 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8372       TCGA-BR-8373       TCGA-BR-8380       TCGA-BR-8381 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483       TCGA-BR-8484 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8487       TCGA-BR-8588 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8589       TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8686       TCGA-BR-8687 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-A44T       TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CR 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J2       TCGA-BR-A4J4 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-A4PE       TCGA-BR-A4PF       TCGA-BR-A4QI       TCGA-CD-5798 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-5799       TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5803 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8526 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-8528       TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-8532       TCGA-CD-8534       TCGA-CD-8535       TCGA-CD-8536 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489       TCGA-CD-A48C 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI       TCGA-CD-A4MJ 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4442       TCGA-CG-4443       TCGA-CG-4444 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-4449       TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-4469       TCGA-CG-4474       TCGA-CG-4475       TCGA-CG-4476 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5732       TCGA-CG-5734 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-6518       TCGA-D7-6519 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8573 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8576       TCGA-D7-8578 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-8579       TCGA-D7-A4YT       TCGA-D7-A4YU       TCGA-D7-A4YV 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-A4YX       TCGA-D7-A4YY       TCGA-D7-A4Z0       TCGA-EQ-8122 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-EQ-A4SO       TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-F1-A448       TCGA-FP-7735       TCGA-FP-7829       TCGA-FP-7916 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-FP-7998       TCGA-FP-8099       TCGA-FP-8209       TCGA-FP-8210 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-FP-8211       TCGA-FP-8631       TCGA-FP-A4BE       TCGA-HF-7132 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HF-7133       TCGA-HF-7136       TCGA-HU-8602       TCGA-HU-8604 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HU-8608       TCGA-HU-8610       TCGA-HU-A4G2       TCGA-HU-A4G3 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HU-A4G6       TCGA-HU-A4G8       TCGA-HU-A4G9       TCGA-HU-A4GC 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GN       TCGA-HU-A4GP 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HU-A4GT       TCGA-HU-A4GU       TCGA-HU-A4GX       TCGA-HU-A4GY 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HU-A4H0       TCGA-HU-A4H2       TCGA-HU-A4H3       TCGA-HU-A4H4 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HU-A4H5       TCGA-HU-A4H6       TCGA-HU-A4HD       TCGA-IN-7806 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663       TCGA-IP-7968 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OLFML3 MUTATED        4      0      0
  OLFML3 WILD-TYPE    119     95     71
D394V7, multiclass
        clus
vv       OLFML3 MUTATED OLFML3 WILD-TYPE
  CLUS_1              4              119
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OLFML3 MUTATED        4      0      0
  OLFML3 WILD-TYPE    153     63     69
D394V8, multiclass
        clus
vv       OLFML3 MUTATED OLFML3 WILD-TYPE
  CLUS_1              4              153
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OLFML3 MUTATED        0      1      1      0      0      0
  OLFML3 WILD-TYPE     33     18     58     39     16     45
D394V9, multiclass
[1] "Remove cluster labels:" "OLFML3 MUTATED"        
clus
  OLFML3 MUTATED OLFML3 WILD-TYPE 
               2              209 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6453 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-7707       TCGA-BR-7715       TCGA-BR-7717       TCGA-BR-7723 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8077 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8078       TCGA-BR-8080       TCGA-BR-8284       TCGA-BR-8286 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8289       TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8296 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8297       TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8370 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373       TCGA-BR-8380 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8487       TCGA-BR-8588 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-A44T       TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J6 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8534       TCGA-CD-8535 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-4449       TCGA-CG-5717 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5726 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8574       TCGA-D7-8575 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-8576       TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YY       TCGA-D7-A4Z0 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-EQ-5647       TCGA-EQ-8122       TCGA-F1-6177       TCGA-F1-6874 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7735       TCGA-FP-7829 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-FP-7998       TCGA-FP-8099       TCGA-FP-8209       TCGA-FP-8210 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-FP-8211       TCGA-FP-8631       TCGA-FP-A4BE       TCGA-HF-7132 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HF-7136       TCGA-HU-8243       TCGA-HU-8602       TCGA-HU-8604 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HU-8608       TCGA-HU-A4G3       TCGA-HU-A4G8       TCGA-HU-A4GC 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HU-A4GD       TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GN 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GX       TCGA-HU-A4GY 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HU-A4H2       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-IP-7968 
"OLFML3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OLFML3 MUTATED        2      0      0      0      0      0
  OLFML3 WILD-TYPE     45     39     35     32     23     35
D394V10, multiclass
[1] "Remove cluster labels:" "OLFML3 MUTATED"        
clus
  OLFML3 MUTATED OLFML3 WILD-TYPE 
               2              209 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6453 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-7707       TCGA-BR-7715       TCGA-BR-7717       TCGA-BR-7723 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8077 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8078       TCGA-BR-8080       TCGA-BR-8284       TCGA-BR-8286 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8289       TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8296 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8297       TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8370 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373       TCGA-BR-8380 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8487       TCGA-BR-8588 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-A44T       TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J6 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8534       TCGA-CD-8535 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-4449       TCGA-CG-5717 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5726 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8574       TCGA-D7-8575 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-8576       TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YY       TCGA-D7-A4Z0 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-EQ-5647       TCGA-EQ-8122       TCGA-F1-6177       TCGA-F1-6874 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7735       TCGA-FP-7829 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-FP-7998       TCGA-FP-8099       TCGA-FP-8209       TCGA-FP-8210 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-FP-8211       TCGA-FP-8631       TCGA-FP-A4BE       TCGA-HF-7132 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HF-7136       TCGA-HU-8243       TCGA-HU-8602       TCGA-HU-8604 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HU-8608       TCGA-HU-A4G3       TCGA-HU-A4G8       TCGA-HU-A4GC 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HU-A4GD       TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GN 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GX       TCGA-HU-A4GY 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-HU-A4H2       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" "OLFML3 WILD-TYPE" 
      TCGA-IP-7968 
"OLFML3 WILD-TYPE" 

Clustering(395) Variable = SH3KBP1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH3KBP1 MUTATED        0     10      1      2      0
  SH3KBP1 WILD-TYPE     79    116     26     41     12
D395V1, multiclass
        clus
vv       SH3KBP1 MUTATED SH3KBP1 WILD-TYPE
  CLUS_1               0                79
  CLUS_2              10               116
  CLUS_3               1                26
  CLUS_4               2                41
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SH3KBP1 MUTATED        1      5      2      1
  SH3KBP1 WILD-TYPE     70     71     32     62
D395V2, multiclass
        clus
vv       SH3KBP1 MUTATED SH3KBP1 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               5                71
  CLUS_3               2                32
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH3KBP1 MUTATED        1      3      5      1      2
  SH3KBP1 WILD-TYPE     15     59     46     64     53
D395V3, multiclass
        clus
vv       SH3KBP1 MUTATED SH3KBP1 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               3                59
  CLUS_3               5                46
  CLUS_4               1                64
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SH3KBP1 MUTATED        3      6      2      1
  SH3KBP1 WILD-TYPE     95     38     48     56
D395V4, multiclass
        clus
vv       SH3KBP1 MUTATED SH3KBP1 WILD-TYPE
  CLUS_1               3                95
  CLUS_2               6                38
  CLUS_3               2                48
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH3KBP1 MUTATED        7      1      1      1      0
  SH3KBP1 WILD-TYPE     55     58     39     36     59
D395V5, multiclass
        clus
vv       SH3KBP1 MUTATED SH3KBP1 WILD-TYPE
  CLUS_1               7                55
  CLUS_2               1                58
  CLUS_3               1                39
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SH3KBP1 MUTATED        2      1      7
  SH3KBP1 WILD-TYPE    104     53     90
D395V6, multiclass
        clus
vv       SH3KBP1 MUTATED SH3KBP1 WILD-TYPE
  CLUS_1               2               104
  CLUS_2               1                53
  CLUS_3               7                90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SH3KBP1 MUTATED       11      1      1
  SH3KBP1 WILD-TYPE    112     94     70
D395V7, multiclass
        clus
vv       SH3KBP1 MUTATED SH3KBP1 WILD-TYPE
  CLUS_1              11               112
  CLUS_2               1                94
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SH3KBP1 MUTATED       11      1      1
  SH3KBP1 WILD-TYPE    146     62     68
D395V8, multiclass
        clus
vv       SH3KBP1 MUTATED SH3KBP1 WILD-TYPE
  CLUS_1              11               146
  CLUS_2               1                62
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SH3KBP1 MUTATED        2      2      1      1      0      1
  SH3KBP1 WILD-TYPE     31     17     58     38     16     44
D395V9, multiclass
        clus
vv       SH3KBP1 MUTATED SH3KBP1 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               2                17
  CLUS_3               1                58
  CLUS_4               1                38
  CLUS_5               0                16
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SH3KBP1 MUTATED        3      1      1      2      0      0
  SH3KBP1 WILD-TYPE     44     38     34     30     23     35
D395V10, multiclass
        clus
vv       SH3KBP1 MUTATED SH3KBP1 WILD-TYPE
  CLUS_1               3                44
  CLUS_2               1                38
  CLUS_3               1                34
  CLUS_4               2                30
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(396) Variable = SPHK2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPHK2 MUTATED        0      3      0      0      0
  SPHK2 WILD-TYPE     79    123     27     43     12
D396V1, multiclass
        clus
vv       SPHK2 MUTATED SPHK2 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             3             123
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPHK2 MUTATED        0      2      0      0
  SPHK2 WILD-TYPE     71     74     34     63
D396V2, multiclass
[1] "Remove cluster labels:" "SPHK2 MUTATED"         
clus
  SPHK2 MUTATED SPHK2 WILD-TYPE 
              2             242 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8589 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U      TCGA-BR-A452 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J6 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-BR-A4QM      TCGA-CD-5798 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-5717      TCGA-CG-5718 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-EQ-5647      TCGA-EQ-8122      TCGA-EQ-A4SO 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-FP-8631      TCGA-FP-A4BE      TCGA-FP-A4BF      TCGA-HF-7132 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HF-7133      TCGA-HF-7136      TCGA-HJ-7597      TCGA-HU-8243 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-8245      TCGA-HU-8249      TCGA-HU-8602      TCGA-HU-8604 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4G3 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4G6      TCGA-HU-A4G9      TCGA-HU-A4GC      TCGA-HU-A4GD 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GP 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H0      TCGA-HU-A4H2      TCGA-HU-A4H3 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-IN-8663      TCGA-IP-7968 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPHK2 MUTATED        0      1      0      0      1
  SPHK2 WILD-TYPE     16     61     51     65     54
D396V3, multiclass
[1] "Remove cluster labels:" "SPHK2 MUTATED"         
clus
  SPHK2 MUTATED SPHK2 WILD-TYPE 
              2             247 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6710 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7715 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8080 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4J4      TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300      TCGA-CG-4301 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4443      TCGA-CG-4444 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4469      TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5723      TCGA-CG-5724 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT      TCGA-D7-A4YU 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7916      TCGA-FP-7998 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7136      TCGA-HJ-7597 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-8602      TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4GF 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPHK2 MUTATED        0      2      0      0
  SPHK2 WILD-TYPE     98     42     50     57
D396V4, multiclass
[1] "Remove cluster labels:" "SPHK2 MUTATED"         
clus
  SPHK2 MUTATED SPHK2 WILD-TYPE 
              2             247 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6710 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7715 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8080 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4J4      TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300      TCGA-CG-4301 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4443      TCGA-CG-4444 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4469      TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5723      TCGA-CG-5724 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT      TCGA-D7-A4YU 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7916      TCGA-FP-7998 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7136      TCGA-HJ-7597 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-8602      TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4GF 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPHK2 MUTATED        2      0      0      0      0
  SPHK2 WILD-TYPE     60     59     40     37     59
D396V5, multiclass
[1] "Remove cluster labels:" "SPHK2 MUTATED"         
clus
  SPHK2 MUTATED SPHK2 WILD-TYPE 
              2             255 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4187      TCGA-BR-4191 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-4257      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-4292      TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-4362      TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-4369      TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6453      TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6565      TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6707      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7716 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8078 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8297      TCGA-BR-8361 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8366 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8371 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CR 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-CD-5798 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5803 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8526 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48C 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5732      TCGA-CG-5734      TCGA-D7-5577 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-EQ-8122      TCGA-EQ-A4SO 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132      TCGA-HF-7133 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4G3      TCGA-HU-A4G6 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4G9      TCGA-HU-A4GC      TCGA-HU-A4GF      TCGA-HU-A4GH 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GT      TCGA-HU-A4GU 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H0      TCGA-HU-A4H2 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4H8      TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPHK2 MUTATED        0      0      2
  SPHK2 WILD-TYPE    106     54     95
D396V6, multiclass
[1] "Remove cluster labels:" "SPHK2 MUTATED"         
clus
  SPHK2 MUTATED SPHK2 WILD-TYPE 
              2             255 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4187      TCGA-BR-4191 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-4257      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-4292      TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-4362      TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-4369      TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6453      TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6565      TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6707      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7716 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8078 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8297      TCGA-BR-8361 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8366 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8371 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CR 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-CD-5798 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5803 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8526 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48C 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5732      TCGA-CG-5734      TCGA-D7-5577 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-EQ-8122      TCGA-EQ-A4SO 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132      TCGA-HF-7133 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4G3      TCGA-HU-A4G6 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4G9      TCGA-HU-A4GC      TCGA-HU-A4GF      TCGA-HU-A4GH 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GT      TCGA-HU-A4GU 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H0      TCGA-HU-A4H2 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4H8      TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPHK2 MUTATED        3      0      0
  SPHK2 WILD-TYPE    120     95     71
D396V7, multiclass
        clus
vv       SPHK2 MUTATED SPHK2 WILD-TYPE
  CLUS_1             3             120
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPHK2 MUTATED        3      0      0
  SPHK2 WILD-TYPE    154     63     69
D396V8, multiclass
        clus
vv       SPHK2 MUTATED SPHK2 WILD-TYPE
  CLUS_1             3             154
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPHK2 MUTATED        1      1      0      0      0      0
  SPHK2 WILD-TYPE     32     18     59     39     16     45
D396V9, multiclass
[1] "Remove cluster labels:" "SPHK2 MUTATED"         
clus
  SPHK2 MUTATED SPHK2 WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4GC      TCGA-HU-A4GD 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-IP-7968 
"SPHK2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPHK2 MUTATED        2      0      0      0      0      0
  SPHK2 WILD-TYPE     45     39     35     32     23     35
D396V10, multiclass
[1] "Remove cluster labels:" "SPHK2 MUTATED"         
clus
  SPHK2 MUTATED SPHK2 WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4GC      TCGA-HU-A4GD 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" "SPHK2 WILD-TYPE" 
     TCGA-IP-7968 
"SPHK2 WILD-TYPE" 

Clustering(397) Variable = TMEM63A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM63A MUTATED        0      7      2      1      1
  TMEM63A WILD-TYPE     79    119     25     42     11
D397V1, multiclass
        clus
vv       TMEM63A MUTATED TMEM63A WILD-TYPE
  CLUS_1               0                79
  CLUS_2               7               119
  CLUS_3               2                25
  CLUS_4               1                42
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM63A MUTATED        0      4      3      1
  TMEM63A WILD-TYPE     71     72     31     62
D397V2, multiclass
        clus
vv       TMEM63A MUTATED TMEM63A WILD-TYPE
  CLUS_1               0                71
  CLUS_2               4                72
  CLUS_3               3                31
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM63A MUTATED        1      5      1      1      2
  TMEM63A WILD-TYPE     15     57     50     64     53
D397V3, multiclass
        clus
vv       TMEM63A MUTATED TMEM63A WILD-TYPE
  CLUS_1               1                15
  CLUS_2               5                57
  CLUS_3               1                50
  CLUS_4               1                64
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM63A MUTATED        2      3      4      1
  TMEM63A WILD-TYPE     96     41     46     56
D397V4, multiclass
        clus
vv       TMEM63A MUTATED TMEM63A WILD-TYPE
  CLUS_1               2                96
  CLUS_2               3                41
  CLUS_3               4                46
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM63A MUTATED        6      1      1      1      0
  TMEM63A WILD-TYPE     56     58     39     36     59
D397V5, multiclass
        clus
vv       TMEM63A MUTATED TMEM63A WILD-TYPE
  CLUS_1               6                56
  CLUS_2               1                58
  CLUS_3               1                39
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM63A MUTATED        2      1      6
  TMEM63A WILD-TYPE    104     53     91
D397V6, multiclass
        clus
vv       TMEM63A MUTATED TMEM63A WILD-TYPE
  CLUS_1               2               104
  CLUS_2               1                53
  CLUS_3               6                91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM63A MUTATED        8      2      1
  TMEM63A WILD-TYPE    115     93     70
D397V7, multiclass
        clus
vv       TMEM63A MUTATED TMEM63A WILD-TYPE
  CLUS_1               8               115
  CLUS_2               2                93
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM63A MUTATED        9      2      0
  TMEM63A WILD-TYPE    148     61     69
D397V8, multiclass
        clus
vv       TMEM63A MUTATED TMEM63A WILD-TYPE
  CLUS_1               9               148
  CLUS_2               2                61
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM63A MUTATED        0      0      3      4      0      1
  TMEM63A WILD-TYPE     33     19     56     35     16     44
D397V9, multiclass
        clus
vv       TMEM63A MUTATED TMEM63A WILD-TYPE
  CLUS_1               0                33
  CLUS_2               0                19
  CLUS_3               3                56
  CLUS_4               4                35
  CLUS_5               0                16
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM63A MUTATED        1      1      3      0      3      0
  TMEM63A WILD-TYPE     46     38     32     32     20     35
D397V10, multiclass
        clus
vv       TMEM63A MUTATED TMEM63A WILD-TYPE
  CLUS_1               1                46
  CLUS_2               1                38
  CLUS_3               3                32
  CLUS_4               0                32
  CLUS_5               3                20
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(398) Variable = NID2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NID2 MUTATED        0     17      0      1      0
  NID2 WILD-TYPE     79    109     27     42     12
D398V1, multiclass
        clus
vv       NID2 MUTATED NID2 WILD-TYPE
  CLUS_1            0             79
  CLUS_2           17            109
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NID2 MUTATED        1      8      1      3
  NID2 WILD-TYPE     70     68     33     60
D398V2, multiclass
        clus
vv       NID2 MUTATED NID2 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            8             68
  CLUS_3            1             33
  CLUS_4            3             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NID2 MUTATED        1      4      6      2      4
  NID2 WILD-TYPE     15     58     45     63     51
D398V3, multiclass
        clus
vv       NID2 MUTATED NID2 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            4             58
  CLUS_3            6             45
  CLUS_4            2             63
  CLUS_5            4             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NID2 MUTATED        5      8      2      2
  NID2 WILD-TYPE     93     36     48     55
D398V4, multiclass
        clus
vv       NID2 MUTATED NID2 WILD-TYPE
  CLUS_1            5             93
  CLUS_2            8             36
  CLUS_3            2             48
  CLUS_4            2             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NID2 MUTATED       10      2      3      0      0
  NID2 WILD-TYPE     52     57     37     37     59
D398V5, multiclass
        clus
vv       NID2 MUTATED NID2 WILD-TYPE
  CLUS_1           10             52
  CLUS_2            2             57
  CLUS_3            3             37
  CLUS_4            0             37
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NID2 MUTATED        3      3      9
  NID2 WILD-TYPE    103     51     88
D398V6, multiclass
        clus
vv       NID2 MUTATED NID2 WILD-TYPE
  CLUS_1            3            103
  CLUS_2            3             51
  CLUS_3            9             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NID2 MUTATED       15      2      1
  NID2 WILD-TYPE    108     93     70
D398V7, multiclass
        clus
vv       NID2 MUTATED NID2 WILD-TYPE
  CLUS_1           15            108
  CLUS_2            2             93
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NID2 MUTATED       14      3      1
  NID2 WILD-TYPE    143     60     68
D398V8, multiclass
        clus
vv       NID2 MUTATED NID2 WILD-TYPE
  CLUS_1           14            143
  CLUS_2            3             60
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NID2 MUTATED        1      2      4      3      0      1
  NID2 WILD-TYPE     32     17     55     36     16     44
D398V9, multiclass
        clus
vv       NID2 MUTATED NID2 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            2             17
  CLUS_3            4             55
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NID2 MUTATED        4      1      4      1      1      0
  NID2 WILD-TYPE     43     38     31     31     22     35
D398V10, multiclass
        clus
vv       NID2 MUTATED NID2 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            1             38
  CLUS_3            4             31
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(399) Variable = FOXQ1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXQ1 MUTATED        0      3      0      0      0
  FOXQ1 WILD-TYPE     79    123     27     43     12
D399V1, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             3             123
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXQ1 MUTATED        0      1      1      0
  FOXQ1 WILD-TYPE     71     75     33     63
D399V2, multiclass
[1] "Remove cluster labels:" "FOXQ1 MUTATED"         
clus
  FOXQ1 MUTATED FOXQ1 WILD-TYPE 
              2             242 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8296      TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8366 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4J4      TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4437 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-FP-A4BE      TCGA-FP-A4BF      TCGA-HF-7132      TCGA-HF-7133 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-8249      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4G3      TCGA-HU-A4G6 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4G8      TCGA-HU-A4G9      TCGA-HU-A4GC      TCGA-HU-A4GD 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GP 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H0      TCGA-HU-A4H2      TCGA-HU-A4H3 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-8663      TCGA-IP-7968 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXQ1 MUTATED        0      0      0      0      1
  FOXQ1 WILD-TYPE     16     62     51     65     54
D399V3, multiclass
[1] "Remove cluster labels:" "FOXQ1 MUTATED"         
clus
  FOXQ1 MUTATED FOXQ1 WILD-TYPE 
              1             248 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6710 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7715 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8080 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4J4      TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4436 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4442      TCGA-CG-4443 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4465 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4474      TCGA-CG-4475 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5723 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7916 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-FP-7998      TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7136 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HJ-7597      TCGA-HU-8602      TCGA-HU-8608      TCGA-HU-8610 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H3 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4HD      TCGA-IN-7806 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXQ1 MUTATED        1      0      0      0
  FOXQ1 WILD-TYPE     97     44     50     57
D399V4, multiclass
[1] "Remove cluster labels:" "FOXQ1 MUTATED"         
clus
  FOXQ1 MUTATED FOXQ1 WILD-TYPE 
              1             248 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6710 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7715 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8080 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4J4      TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4436 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4442      TCGA-CG-4443 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4465 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4474      TCGA-CG-4475 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5723 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7916 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-FP-7998      TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7136 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HJ-7597      TCGA-HU-8602      TCGA-HU-8608      TCGA-HU-8610 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H3 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4HD      TCGA-IN-7806 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXQ1 MUTATED        2      0      1      0      0
  FOXQ1 WILD-TYPE     60     59     39     37     59
D399V5, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXQ1 MUTATED        0      0      3
  FOXQ1 WILD-TYPE    106     54     94
D399V6, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXQ1 MUTATED        3      0      0
  FOXQ1 WILD-TYPE    120     95     71
D399V7, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             3             120
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXQ1 MUTATED        2      0      1
  FOXQ1 WILD-TYPE    155     63     68
D399V8, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             2             155
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FOXQ1 MUTATED        0      0      0      2      0      0
  FOXQ1 WILD-TYPE     33     19     59     37     16     45
D399V9, multiclass
[1] "Remove cluster labels:" "FOXQ1 MUTATED"         
clus
  FOXQ1 MUTATED FOXQ1 WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7851 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8080 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297      TCGA-BR-8360 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J6      TCGA-BR-A4J7 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48C 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CG-4437 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717      TCGA-CG-5718 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-EQ-5647 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7998 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132      TCGA-HF-7136 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC      TCGA-HU-A4GD 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IP-7968 
"FOXQ1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FOXQ1 MUTATED        0      0      0      1      1      0
  FOXQ1 WILD-TYPE     47     39     35     31     22     35
D399V10, multiclass
[1] "Remove cluster labels:" "FOXQ1 MUTATED"         
clus
  FOXQ1 MUTATED FOXQ1 WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7851 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8080 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297      TCGA-BR-8360 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J6      TCGA-BR-A4J7 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48C 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CG-4437 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717      TCGA-CG-5718 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-EQ-5647 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7998 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132      TCGA-HF-7136 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC      TCGA-HU-A4GD 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IP-7968 
"FOXQ1 WILD-TYPE" 

Clustering(400) Variable = SUCLG2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SUCLG2 MUTATED        0      5      0      0      0
  SUCLG2 WILD-TYPE     79    121     27     43     12
D400V1, multiclass
        clus
vv       SUCLG2 MUTATED SUCLG2 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              5              121
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUCLG2 MUTATED        0      3      0      1
  SUCLG2 WILD-TYPE     71     73     34     62
D400V2, multiclass
        clus
vv       SUCLG2 MUTATED SUCLG2 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              3               73
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SUCLG2 MUTATED        0      1      1      0      2
  SUCLG2 WILD-TYPE     16     61     50     65     53
D400V3, multiclass
        clus
vv       SUCLG2 MUTATED SUCLG2 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              1               61
  CLUS_3              1               50
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUCLG2 MUTATED        0      3      1      0
  SUCLG2 WILD-TYPE     98     41     49     57
D400V4, multiclass
        clus
vv       SUCLG2 MUTATED SUCLG2 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              3               41
  CLUS_3              1               49
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SUCLG2 MUTATED        1      0      0      3      0
  SUCLG2 WILD-TYPE     61     59     40     34     59
D400V5, multiclass
        clus
vv       SUCLG2 MUTATED SUCLG2 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              3               34
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SUCLG2 MUTATED        1      0      3
  SUCLG2 WILD-TYPE    105     54     94
D400V6, multiclass
        clus
vv       SUCLG2 MUTATED SUCLG2 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               54
  CLUS_3              3               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SUCLG2 MUTATED        5      0      0
  SUCLG2 WILD-TYPE    118     95     71
D400V7, multiclass
        clus
vv       SUCLG2 MUTATED SUCLG2 WILD-TYPE
  CLUS_1              5              118
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SUCLG2 MUTATED        4      1      0
  SUCLG2 WILD-TYPE    153     62     69
D400V8, multiclass
        clus
vv       SUCLG2 MUTATED SUCLG2 WILD-TYPE
  CLUS_1              4              153
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SUCLG2 MUTATED        1      1      2      0      0      0
  SUCLG2 WILD-TYPE     32     18     57     39     16     45
D400V9, multiclass
        clus
vv       SUCLG2 MUTATED SUCLG2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SUCLG2 MUTATED        3      0      1      0      0      0
  SUCLG2 WILD-TYPE     44     39     34     32     23     35
D400V10, multiclass
        clus
vv       SUCLG2 MUTATED SUCLG2 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(401) Variable = MOCS2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MOCS2 MUTATED        0      2      0      2      0
  MOCS2 WILD-TYPE     79    124     27     41     12
D401V1, multiclass
        clus
vv       MOCS2 MUTATED MOCS2 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             2             124
  CLUS_3             0              27
  CLUS_4             2              41
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOCS2 MUTATED        0      2      0      0
  MOCS2 WILD-TYPE     71     74     34     63
D401V2, multiclass
[1] "Remove cluster labels:" "MOCS2 MUTATED"         
clus
  MOCS2 MUTATED MOCS2 WILD-TYPE 
              2             242 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J6      TCGA-BR-A4J7 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-5717      TCGA-CG-5718 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-EQ-5647      TCGA-EQ-8122      TCGA-EQ-A4SO 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-FP-8631      TCGA-FP-A4BE      TCGA-FP-A4BF      TCGA-HF-7133 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-8249      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4G3      TCGA-HU-A4G6 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4G8      TCGA-HU-A4G9      TCGA-HU-A4GC      TCGA-HU-A4GD 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GP 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H0      TCGA-HU-A4H2      TCGA-HU-A4H3 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-IN-8663      TCGA-IP-7968 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MOCS2 MUTATED        0      2      0      1      1
  MOCS2 WILD-TYPE     16     60     51     64     54
D401V3, multiclass
        clus
vv       MOCS2 MUTATED MOCS2 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             0              51
  CLUS_4             1              64
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOCS2 MUTATED        1      1      1      1
  MOCS2 WILD-TYPE     97     43     49     56
D401V4, multiclass
        clus
vv       MOCS2 MUTATED MOCS2 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             1              43
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MOCS2 MUTATED        2      1      1      0      0
  MOCS2 WILD-TYPE     60     58     39     37     59
D401V5, multiclass
        clus
vv       MOCS2 MUTATED MOCS2 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MOCS2 MUTATED        2      0      2
  MOCS2 WILD-TYPE    104     54     95
D401V6, multiclass
        clus
vv       MOCS2 MUTATED MOCS2 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             2              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MOCS2 MUTATED        4      0      0
  MOCS2 WILD-TYPE    119     95     71
D401V7, multiclass
        clus
vv       MOCS2 MUTATED MOCS2 WILD-TYPE
  CLUS_1             4             119
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MOCS2 MUTATED        4      0      0
  MOCS2 WILD-TYPE    153     63     69
D401V8, multiclass
        clus
vv       MOCS2 MUTATED MOCS2 WILD-TYPE
  CLUS_1             4             153
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MOCS2 MUTATED        0      0      0      2      0      0
  MOCS2 WILD-TYPE     33     19     59     37     16     45
D401V9, multiclass
[1] "Remove cluster labels:" "MOCS2 MUTATED"         
clus
  MOCS2 MUTATED MOCS2 WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8363      TCGA-BR-8364 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J6 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7136 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC      TCGA-HU-A4GD 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-IP-7968 
"MOCS2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MOCS2 MUTATED        1      0      0      1      0      0
  MOCS2 WILD-TYPE     46     39     35     31     23     35
D401V10, multiclass
[1] "Remove cluster labels:" "MOCS2 MUTATED"         
clus
  MOCS2 MUTATED MOCS2 WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8363      TCGA-BR-8364 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J6 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7136 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC      TCGA-HU-A4GD 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-IP-7968 
"MOCS2 WILD-TYPE" 

Clustering(402) Variable = C7ORF58 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C7ORF58 MUTATED        2      7      2      2      1
  C7ORF58 WILD-TYPE     77    119     25     41     11
D402V1, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               2                77
  CLUS_2               7               119
  CLUS_3               2                25
  CLUS_4               2                41
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF58 MUTATED        2     10      1      0
  C7ORF58 WILD-TYPE     69     66     33     63
D402V2, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               2                69
  CLUS_2              10                66
  CLUS_3               1                33
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C7ORF58 MUTATED        1      5      3      1      3
  C7ORF58 WILD-TYPE     15     57     48     64     52
D402V3, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               5                57
  CLUS_3               3                48
  CLUS_4               1                64
  CLUS_5               3                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF58 MUTATED        2      7      2      2
  C7ORF58 WILD-TYPE     96     37     48     55
D402V4, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               2                96
  CLUS_2               7                37
  CLUS_3               2                48
  CLUS_4               2                55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C7ORF58 MUTATED        7      1      2      1      2
  C7ORF58 WILD-TYPE     55     58     38     36     57
D402V5, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               7                55
  CLUS_2               1                58
  CLUS_3               2                38
  CLUS_4               1                36
  CLUS_5               2                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF58 MUTATED        3      1      9
  C7ORF58 WILD-TYPE    103     53     88
D402V6, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               3               103
  CLUS_2               1                53
  CLUS_3               9                88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF58 MUTATED       10      3      2
  C7ORF58 WILD-TYPE    113     92     69
D402V7, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1              10               113
  CLUS_2               3                92
  CLUS_3               2                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF58 MUTATED       11      2      2
  C7ORF58 WILD-TYPE    146     61     67
D402V8, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1              11               146
  CLUS_2               2                61
  CLUS_3               2                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C7ORF58 MUTATED        2      2      3      3      1      1
  C7ORF58 WILD-TYPE     31     17     56     36     15     44
D402V9, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               2                17
  CLUS_3               3                56
  CLUS_4               3                36
  CLUS_5               1                15
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C7ORF58 MUTATED        5      1      2      2      1      1
  C7ORF58 WILD-TYPE     42     38     33     30     22     34
D402V10, multiclass
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  CLUS_1               5                42
  CLUS_2               1                38
  CLUS_3               2                33
  CLUS_4               2                30
  CLUS_5               1                22
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(403) Variable = B3GNT5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B3GNT5 MUTATED        0      8      0      2      0
  B3GNT5 WILD-TYPE     79    118     27     41     12
D403V1, multiclass
        clus
vv       B3GNT5 MUTATED B3GNT5 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              8              118
  CLUS_3              0               27
  CLUS_4              2               41
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B3GNT5 MUTATED        1      5      1      2
  B3GNT5 WILD-TYPE     70     71     33     61
D403V2, multiclass
        clus
vv       B3GNT5 MUTATED B3GNT5 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              5               71
  CLUS_3              1               33
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B3GNT5 MUTATED        1      3      3      1      1
  B3GNT5 WILD-TYPE     15     59     48     64     54
D403V3, multiclass
        clus
vv       B3GNT5 MUTATED B3GNT5 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              3               59
  CLUS_3              3               48
  CLUS_4              1               64
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B3GNT5 MUTATED        2      3      3      1
  B3GNT5 WILD-TYPE     96     41     47     56
D403V4, multiclass
        clus
vv       B3GNT5 MUTATED B3GNT5 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              3               41
  CLUS_3              3               47
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B3GNT5 MUTATED        6      1      1      2      0
  B3GNT5 WILD-TYPE     56     58     39     35     59
D403V5, multiclass
        clus
vv       B3GNT5 MUTATED B3GNT5 WILD-TYPE
  CLUS_1              6               56
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              2               35
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  B3GNT5 MUTATED        3      1      6
  B3GNT5 WILD-TYPE    103     53     91
D403V6, multiclass
        clus
vv       B3GNT5 MUTATED B3GNT5 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              1               53
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  B3GNT5 MUTATED        9      1      0
  B3GNT5 WILD-TYPE    114     94     71
D403V7, multiclass
        clus
vv       B3GNT5 MUTATED B3GNT5 WILD-TYPE
  CLUS_1              9              114
  CLUS_2              1               94
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  B3GNT5 MUTATED        9      1      0
  B3GNT5 WILD-TYPE    148     62     69
D403V8, multiclass
        clus
vv       B3GNT5 MUTATED B3GNT5 WILD-TYPE
  CLUS_1              9              148
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  B3GNT5 MUTATED        2      1      2      3      0      0
  B3GNT5 WILD-TYPE     31     18     57     36     16     45
D403V9, multiclass
        clus
vv       B3GNT5 MUTATED B3GNT5 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              3               36
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  B3GNT5 MUTATED        3      0      2      1      2      0
  B3GNT5 WILD-TYPE     44     39     33     31     21     35
D403V10, multiclass
        clus
vv       B3GNT5 MUTATED B3GNT5 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              1               31
  CLUS_5              2               21
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(404) Variable = CAMTA2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CAMTA2 MUTATED        0     15      1      0      0
  CAMTA2 WILD-TYPE     79    111     26     43     12
D404V1, multiclass
        clus
vv       CAMTA2 MUTATED CAMTA2 WILD-TYPE
  CLUS_1              0               79
  CLUS_2             15              111
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAMTA2 MUTATED        1     10      4      0
  CAMTA2 WILD-TYPE     70     66     30     63
D404V2, multiclass
        clus
vv       CAMTA2 MUTATED CAMTA2 WILD-TYPE
  CLUS_1              1               70
  CLUS_2             10               66
  CLUS_3              4               30
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CAMTA2 MUTATED        1      4      4      0      4
  CAMTA2 WILD-TYPE     15     58     47     65     51
D404V3, multiclass
        clus
vv       CAMTA2 MUTATED CAMTA2 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              4               58
  CLUS_3              4               47
  CLUS_4              0               65
  CLUS_5              4               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAMTA2 MUTATED        2      7      3      1
  CAMTA2 WILD-TYPE     96     37     47     56
D404V4, multiclass
        clus
vv       CAMTA2 MUTATED CAMTA2 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              7               37
  CLUS_3              3               47
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CAMTA2 MUTATED        6      1      3      4      0
  CAMTA2 WILD-TYPE     56     58     37     33     59
D404V5, multiclass
        clus
vv       CAMTA2 MUTATED CAMTA2 WILD-TYPE
  CLUS_1              6               56
  CLUS_2              1               58
  CLUS_3              3               37
  CLUS_4              4               33
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CAMTA2 MUTATED        3      1     10
  CAMTA2 WILD-TYPE    103     53     87
D404V6, multiclass
        clus
vv       CAMTA2 MUTATED CAMTA2 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              1               53
  CLUS_3             10               87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CAMTA2 MUTATED       13      2      1
  CAMTA2 WILD-TYPE    110     93     70
D404V7, multiclass
        clus
vv       CAMTA2 MUTATED CAMTA2 WILD-TYPE
  CLUS_1             13              110
  CLUS_2              2               93
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CAMTA2 MUTATED       14      1      1
  CAMTA2 WILD-TYPE    143     62     68
D404V8, multiclass
        clus
vv       CAMTA2 MUTATED CAMTA2 WILD-TYPE
  CLUS_1             14              143
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CAMTA2 MUTATED        1      4      9      1      0      0
  CAMTA2 WILD-TYPE     32     15     50     38     16     45
D404V9, multiclass
        clus
vv       CAMTA2 MUTATED CAMTA2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              4               15
  CLUS_3              9               50
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CAMTA2 MUTATED        5      0      7      1      2      0
  CAMTA2 WILD-TYPE     42     39     28     31     21     35
D404V10, multiclass
        clus
vv       CAMTA2 MUTATED CAMTA2 WILD-TYPE
  CLUS_1              5               42
  CLUS_2              0               39
  CLUS_3              7               28
  CLUS_4              1               31
  CLUS_5              2               21
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(405) Variable = PLA2G15 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLA2G15 MUTATED        1      6      2      0      0
  PLA2G15 WILD-TYPE     78    120     25     43     12
D405V1, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               1                78
  CLUS_2               6               120
  CLUS_3               2                25
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLA2G15 MUTATED        1      4      1      1
  PLA2G15 WILD-TYPE     70     72     33     62
D405V2, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               4                72
  CLUS_3               1                33
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLA2G15 MUTATED        1      4      2      0      1
  PLA2G15 WILD-TYPE     15     58     49     65     54
D405V3, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               4                58
  CLUS_3               2                49
  CLUS_4               0                65
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLA2G15 MUTATED        2      5      1      0
  PLA2G15 WILD-TYPE     96     39     49     57
D405V4, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               2                96
  CLUS_2               5                39
  CLUS_3               1                49
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLA2G15 MUTATED        3      0      2      1      1
  PLA2G15 WILD-TYPE     59     59     38     36     58
D405V5, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               3                59
  CLUS_2               0                59
  CLUS_3               2                38
  CLUS_4               1                36
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLA2G15 MUTATED        0      0      7
  PLA2G15 WILD-TYPE    106     54     90
D405V6, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               0               106
  CLUS_2               0                54
  CLUS_3               7                90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLA2G15 MUTATED        7      1      1
  PLA2G15 WILD-TYPE    116     94     70
D405V7, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               7               116
  CLUS_2               1                94
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLA2G15 MUTATED        7      1      1
  PLA2G15 WILD-TYPE    150     62     68
D405V8, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               7               150
  CLUS_2               1                62
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLA2G15 MUTATED        1      0      3      1      0      1
  PLA2G15 WILD-TYPE     32     19     56     38     16     44
D405V9, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                19
  CLUS_3               3                56
  CLUS_4               1                38
  CLUS_5               0                16
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLA2G15 MUTATED        2      1      2      1      0      0
  PLA2G15 WILD-TYPE     45     38     33     31     23     35
D405V10, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               2                45
  CLUS_2               1                38
  CLUS_3               2                33
  CLUS_4               1                31
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(406) Variable = PHKB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHKB MUTATED        0      2      2      1      1
  PHKB WILD-TYPE     79    124     25     42     11
D406V1, multiclass
        clus
vv       PHKB MUTATED PHKB WILD-TYPE
  CLUS_1            0             79
  CLUS_2            2            124
  CLUS_3            2             25
  CLUS_4            1             42
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHKB MUTATED        0      6      0      0
  PHKB WILD-TYPE     71     70     34     63
D406V2, multiclass
        clus
vv       PHKB MUTATED PHKB WILD-TYPE
  CLUS_1            0             71
  CLUS_2            6             70
  CLUS_3            0             34
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHKB MUTATED        0      1      0      1      2
  PHKB WILD-TYPE     16     61     51     64     53
D406V3, multiclass
        clus
vv       PHKB MUTATED PHKB WILD-TYPE
  CLUS_1            0             16
  CLUS_2            1             61
  CLUS_3            0             51
  CLUS_4            1             64
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHKB MUTATED        0      3      0      1
  PHKB WILD-TYPE     98     41     50     56
D406V4, multiclass
        clus
vv       PHKB MUTATED PHKB WILD-TYPE
  CLUS_1            0             98
  CLUS_2            3             41
  CLUS_3            0             50
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHKB MUTATED        3      1      1      1      0
  PHKB WILD-TYPE     59     58     39     36     59
D406V5, multiclass
        clus
vv       PHKB MUTATED PHKB WILD-TYPE
  CLUS_1            3             59
  CLUS_2            1             58
  CLUS_3            1             39
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHKB MUTATED        0      1      5
  PHKB WILD-TYPE    106     53     92
D406V6, multiclass
        clus
vv       PHKB MUTATED PHKB WILD-TYPE
  CLUS_1            0            106
  CLUS_2            1             53
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHKB MUTATED        5      1      0
  PHKB WILD-TYPE    118     94     71
D406V7, multiclass
        clus
vv       PHKB MUTATED PHKB WILD-TYPE
  CLUS_1            5            118
  CLUS_2            1             94
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PHKB MUTATED        5      1      0
  PHKB WILD-TYPE    152     62     69
D406V8, multiclass
        clus
vv       PHKB MUTATED PHKB WILD-TYPE
  CLUS_1            5            152
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHKB MUTATED        1      3      0      1      0      1
  PHKB WILD-TYPE     32     16     59     38     16     44
D406V9, multiclass
        clus
vv       PHKB MUTATED PHKB WILD-TYPE
  CLUS_1            1             32
  CLUS_2            3             16
  CLUS_3            0             59
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHKB MUTATED        3      1      0      2      0      0
  PHKB WILD-TYPE     44     38     35     30     23     35
D406V10, multiclass
        clus
vv       PHKB MUTATED PHKB WILD-TYPE
  CLUS_1            3             44
  CLUS_2            1             38
  CLUS_3            0             35
  CLUS_4            2             30
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(407) Variable = CEP120 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP120 MUTATED        0      9      1      0      0
  CEP120 WILD-TYPE     79    117     26     43     12
D407V1, multiclass
        clus
vv       CEP120 MUTATED CEP120 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              9              117
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP120 MUTATED        0      5      1      2
  CEP120 WILD-TYPE     71     71     33     61
D407V2, multiclass
        clus
vv       CEP120 MUTATED CEP120 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              5               71
  CLUS_3              1               33
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP120 MUTATED        2      2      0      1      3
  CEP120 WILD-TYPE     14     60     51     64     52
D407V3, multiclass
        clus
vv       CEP120 MUTATED CEP120 WILD-TYPE
  CLUS_1              2               14
  CLUS_2              2               60
  CLUS_3              0               51
  CLUS_4              1               64
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP120 MUTATED        2      4      1      1
  CEP120 WILD-TYPE     96     40     49     56
D407V4, multiclass
        clus
vv       CEP120 MUTATED CEP120 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              4               40
  CLUS_3              1               49
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP120 MUTATED        5      1      1      1      0
  CEP120 WILD-TYPE     57     58     39     36     59
D407V5, multiclass
        clus
vv       CEP120 MUTATED CEP120 WILD-TYPE
  CLUS_1              5               57
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP120 MUTATED        1      1      6
  CEP120 WILD-TYPE    105     53     91
D407V6, multiclass
        clus
vv       CEP120 MUTATED CEP120 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              1               53
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP120 MUTATED        8      1      1
  CEP120 WILD-TYPE    115     94     70
D407V7, multiclass
        clus
vv       CEP120 MUTATED CEP120 WILD-TYPE
  CLUS_1              8              115
  CLUS_2              1               94
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP120 MUTATED        9      1      0
  CEP120 WILD-TYPE    148     62     69
D407V8, multiclass
        clus
vv       CEP120 MUTATED CEP120 WILD-TYPE
  CLUS_1              9              148
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CEP120 MUTATED        1      0      3      3      0      1
  CEP120 WILD-TYPE     32     19     56     36     16     44
D407V9, multiclass
        clus
vv       CEP120 MUTATED CEP120 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               19
  CLUS_3              3               56
  CLUS_4              3               36
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CEP120 MUTATED        2      1      3      1      1      0
  CEP120 WILD-TYPE     45     38     32     31     22     35
D407V10, multiclass
        clus
vv       CEP120 MUTATED CEP120 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              1               38
  CLUS_3              3               32
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(408) Variable = SERPINB8 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINB8 MUTATED        1      6      0      0      1
  SERPINB8 WILD-TYPE     78    120     27     43     11
D408V1, multiclass
        clus
vv       SERPINB8 MUTATED SERPINB8 WILD-TYPE
  CLUS_1                1                 78
  CLUS_2                6                120
  CLUS_3                0                 27
  CLUS_4                0                 43
  CLUS_5                1                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB8 MUTATED        1      5      0      1
  SERPINB8 WILD-TYPE     70     71     34     62
D408V2, multiclass
        clus
vv       SERPINB8 MUTATED SERPINB8 WILD-TYPE
  CLUS_1                1                 70
  CLUS_2                5                 71
  CLUS_3                0                 34
  CLUS_4                1                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINB8 MUTATED        1      4      1      0      0
  SERPINB8 WILD-TYPE     15     58     50     65     55
D408V3, multiclass
        clus
vv       SERPINB8 MUTATED SERPINB8 WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                4                 58
  CLUS_3                1                 50
  CLUS_4                0                 65
  CLUS_5                0                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB8 MUTATED        1      2      3      0
  SERPINB8 WILD-TYPE     97     42     47     57
D408V4, multiclass
        clus
vv       SERPINB8 MUTATED SERPINB8 WILD-TYPE
  CLUS_1                1                 97
  CLUS_2                2                 42
  CLUS_3                3                 47
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINB8 MUTATED        4      0      1      2      0
  SERPINB8 WILD-TYPE     58     59     39     35     59
D408V5, multiclass
        clus
vv       SERPINB8 MUTATED SERPINB8 WILD-TYPE
  CLUS_1                4                 58
  CLUS_2                0                 59
  CLUS_3                1                 39
  CLUS_4                2                 35
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINB8 MUTATED        1      0      6
  SERPINB8 WILD-TYPE    105     54     91
D408V6, multiclass
        clus
vv       SERPINB8 MUTATED SERPINB8 WILD-TYPE
  CLUS_1                1                105
  CLUS_2                0                 54
  CLUS_3                6                 91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINB8 MUTATED        5      2      1
  SERPINB8 WILD-TYPE    118     93     70
D408V7, multiclass
        clus
vv       SERPINB8 MUTATED SERPINB8 WILD-TYPE
  CLUS_1                5                118
  CLUS_2                2                 93
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINB8 MUTATED        5      2      1
  SERPINB8 WILD-TYPE    152     61     68
D408V8, multiclass
        clus
vv       SERPINB8 MUTATED SERPINB8 WILD-TYPE
  CLUS_1                5                152
  CLUS_2                2                 61
  CLUS_3                1                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SERPINB8 MUTATED        0      2      3      1      0      0
  SERPINB8 WILD-TYPE     33     17     56     38     16     45
D408V9, multiclass
        clus
vv       SERPINB8 MUTATED SERPINB8 WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                2                 17
  CLUS_3                3                 56
  CLUS_4                1                 38
  CLUS_5                0                 16
  CLUS_6                0                 45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SERPINB8 MUTATED        2      0      2      2      0      0
  SERPINB8 WILD-TYPE     45     39     33     30     23     35
D408V10, multiclass
        clus
vv       SERPINB8 MUTATED SERPINB8 WILD-TYPE
  CLUS_1                2                 45
  CLUS_2                0                 39
  CLUS_3                2                 33
  CLUS_4                2                 30
  CLUS_5                0                 23
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(409) Variable = EXO1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXO1 MUTATED        0     13      1      2      0
  EXO1 WILD-TYPE     79    113     26     41     12
D409V1, multiclass
        clus
vv       EXO1 MUTATED EXO1 WILD-TYPE
  CLUS_1            0             79
  CLUS_2           13            113
  CLUS_3            1             26
  CLUS_4            2             41
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXO1 MUTATED        0     10      3      0
  EXO1 WILD-TYPE     71     66     31     63
D409V2, multiclass
        clus
vv       EXO1 MUTATED EXO1 WILD-TYPE
  CLUS_1            0             71
  CLUS_2           10             66
  CLUS_3            3             31
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXO1 MUTATED        0      7      4      1      2
  EXO1 WILD-TYPE     16     55     47     64     53
D409V3, multiclass
        clus
vv       EXO1 MUTATED EXO1 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            7             55
  CLUS_3            4             47
  CLUS_4            1             64
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXO1 MUTATED        0     10      3      1
  EXO1 WILD-TYPE     98     34     47     56
D409V4, multiclass
        clus
vv       EXO1 MUTATED EXO1 WILD-TYPE
  CLUS_1            0             98
  CLUS_2           10             34
  CLUS_3            3             47
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXO1 MUTATED        8      2      1      4      0
  EXO1 WILD-TYPE     54     57     39     33     59
D409V5, multiclass
        clus
vv       EXO1 MUTATED EXO1 WILD-TYPE
  CLUS_1            8             54
  CLUS_2            2             57
  CLUS_3            1             39
  CLUS_4            4             33
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EXO1 MUTATED        2      1     12
  EXO1 WILD-TYPE    104     53     85
D409V6, multiclass
        clus
vv       EXO1 MUTATED EXO1 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            1             53
  CLUS_3           12             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EXO1 MUTATED       13      2      1
  EXO1 WILD-TYPE    110     93     70
D409V7, multiclass
        clus
vv       EXO1 MUTATED EXO1 WILD-TYPE
  CLUS_1           13            110
  CLUS_2            2             93
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EXO1 MUTATED       14      2      0
  EXO1 WILD-TYPE    143     61     69
D409V8, multiclass
        clus
vv       EXO1 MUTATED EXO1 WILD-TYPE
  CLUS_1           14            143
  CLUS_2            2             61
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EXO1 MUTATED        1      3      4      2      0      2
  EXO1 WILD-TYPE     32     16     55     37     16     43
D409V9, multiclass
        clus
vv       EXO1 MUTATED EXO1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            3             16
  CLUS_3            4             55
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            2             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EXO1 MUTATED        4      2      4      2      0      0
  EXO1 WILD-TYPE     43     37     31     30     23     35
D409V10, multiclass
        clus
vv       EXO1 MUTATED EXO1 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            2             37
  CLUS_3            4             31
  CLUS_4            2             30
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(410) Variable = WDR59 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR59 MUTATED        3      6      0      0      1
  WDR59 WILD-TYPE     76    120     27     43     11
D410V1, multiclass
        clus
vv       WDR59 MUTATED WDR59 WILD-TYPE
  CLUS_1             3              76
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR59 MUTATED        3      4      0      0
  WDR59 WILD-TYPE     68     72     34     63
D410V2, multiclass
        clus
vv       WDR59 MUTATED WDR59 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             4              72
  CLUS_3             0              34
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR59 MUTATED        1      1      3      0      4
  WDR59 WILD-TYPE     15     61     48     65     51
D410V3, multiclass
        clus
vv       WDR59 MUTATED WDR59 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             1              61
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR59 MUTATED        4      4      1      0
  WDR59 WILD-TYPE     94     40     49     57
D410V4, multiclass
        clus
vv       WDR59 MUTATED WDR59 WILD-TYPE
  CLUS_1             4              94
  CLUS_2             4              40
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR59 MUTATED        2      1      2      4      2
  WDR59 WILD-TYPE     60     58     38     33     57
D410V5, multiclass
        clus
vv       WDR59 MUTATED WDR59 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              58
  CLUS_3             2              38
  CLUS_4             4              33
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR59 MUTATED        2      1      8
  WDR59 WILD-TYPE    104     53     89
D410V6, multiclass
        clus
vv       WDR59 MUTATED WDR59 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              53
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR59 MUTATED        8      1      2
  WDR59 WILD-TYPE    115     94     69
D410V7, multiclass
        clus
vv       WDR59 MUTATED WDR59 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             1              94
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR59 MUTATED        8      1      2
  WDR59 WILD-TYPE    149     62     67
D410V8, multiclass
        clus
vv       WDR59 MUTATED WDR59 WILD-TYPE
  CLUS_1             8             149
  CLUS_2             1              62
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WDR59 MUTATED        1      2      1      1      1      1
  WDR59 WILD-TYPE     32     17     58     38     15     44
D410V9, multiclass
        clus
vv       WDR59 MUTATED WDR59 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              17
  CLUS_3             1              58
  CLUS_4             1              38
  CLUS_5             1              15
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WDR59 MUTATED        4      1      0      1      0      1
  WDR59 WILD-TYPE     43     38     35     31     23     34
D410V10, multiclass
        clus
vv       WDR59 MUTATED WDR59 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             1              38
  CLUS_3             0              35
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(411) Variable = UNC50 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UNC50 MUTATED        0      2      0      0      0
  UNC50 WILD-TYPE     79    124     27     43     12
D411V1, multiclass
[1] "Remove cluster labels:" "UNC50 MUTATED"         
clus
  UNC50 MUTATED UNC50 WILD-TYPE 
              2             285 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8369 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J6      TCGA-BR-A4J7 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-8524      TCGA-CD-8525 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-4469      TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-FP-A4BF      TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7136 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245      TCGA-HU-8249 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608      TCGA-HU-8610 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4G2      TCGA-HU-A4G3      TCGA-HU-A4G6      TCGA-HU-A4G8 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4G9      TCGA-HU-A4GC      TCGA-HU-A4GD      TCGA-HU-A4GF 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4H0      TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HD 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IP-7968 
"UNC50 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UNC50 MUTATED        0      2      0      0
  UNC50 WILD-TYPE     71     74     34     63
D411V2, multiclass
[1] "Remove cluster labels:" "UNC50 MUTATED"         
clus
  UNC50 MUTATED UNC50 WILD-TYPE 
              2             242 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8369 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J6      TCGA-BR-A4J7 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-5717      TCGA-CG-5718 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-EQ-5647      TCGA-EQ-8122      TCGA-EQ-A4SO 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-FP-8631      TCGA-FP-A4BF      TCGA-HF-7132      TCGA-HF-7133 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-8249      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4G3      TCGA-HU-A4G6 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4G8      TCGA-HU-A4G9      TCGA-HU-A4GC      TCGA-HU-A4GD 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GP 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H0      TCGA-HU-A4H2      TCGA-HU-A4H3 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IN-8663      TCGA-IP-7968 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UNC50 MUTATED        0      1      1      0      0
  UNC50 WILD-TYPE     16     61     50     65     55
D411V3, multiclass
[1] "Remove cluster labels:" "UNC50 MUTATED"         
clus
  UNC50 MUTATED UNC50 WILD-TYPE 
              2             247 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6710 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7715 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8080 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8369 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8380 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-BR-A4QL 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300      TCGA-CG-4301 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4443      TCGA-CG-4444 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-4469      TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5723      TCGA-CG-5724 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT      TCGA-D7-A4YU 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7916      TCGA-FP-7998 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7136      TCGA-HJ-7597 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-8602      TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4GF 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UNC50 MUTATED        1      1      0      0
  UNC50 WILD-TYPE     97     43     50     57
D411V4, multiclass
[1] "Remove cluster labels:" "UNC50 MUTATED"         
clus
  UNC50 MUTATED UNC50 WILD-TYPE 
              2             247 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6710 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7715 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8080 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8369 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8380 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-BR-A4QL 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300      TCGA-CG-4301 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4443      TCGA-CG-4444 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4465      TCGA-CG-4466 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-4469      TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5723      TCGA-CG-5724 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT      TCGA-D7-A4YU 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7916      TCGA-FP-7998 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7136      TCGA-HJ-7597 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-8602      TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4GF 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UNC50 MUTATED        3      0      0      0      0
  UNC50 WILD-TYPE     59     59     40     37     59
D411V5, multiclass
        clus
vv       UNC50 MUTATED UNC50 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UNC50 MUTATED        0      0      3
  UNC50 WILD-TYPE    106     54     94
D411V6, multiclass
        clus
vv       UNC50 MUTATED UNC50 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UNC50 MUTATED        3      0      0
  UNC50 WILD-TYPE    120     95     71
D411V7, multiclass
        clus
vv       UNC50 MUTATED UNC50 WILD-TYPE
  CLUS_1             3             120
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UNC50 MUTATED        3      0      0
  UNC50 WILD-TYPE    154     63     69
D411V8, multiclass
        clus
vv       UNC50 MUTATED UNC50 WILD-TYPE
  CLUS_1             3             154
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UNC50 MUTATED        2      0      0      0      0      0
  UNC50 WILD-TYPE     31     19     59     39     16     45
D411V9, multiclass
[1] "Remove cluster labels:" "UNC50 MUTATED"         
clus
  UNC50 MUTATED UNC50 WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8369      TCGA-BR-8370 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J6 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-HF-7132      TCGA-HF-7136 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC      TCGA-HU-A4GD 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IP-7968 
"UNC50 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UNC50 MUTATED        2      0      0      0      0      0
  UNC50 WILD-TYPE     45     39     35     32     23     35
D411V10, multiclass
[1] "Remove cluster labels:" "UNC50 MUTATED"         
clus
  UNC50 MUTATED UNC50 WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8369      TCGA-BR-8370 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J6 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-HF-7132      TCGA-HF-7136 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC      TCGA-HU-A4GD 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" "UNC50 WILD-TYPE" 
     TCGA-IP-7968 
"UNC50 WILD-TYPE" 

Clustering(412) Variable = SOHLH2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOHLH2 MUTATED        5      4      2      2      1
  SOHLH2 WILD-TYPE     74    122     25     41     11
D412V1, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              5               74
  CLUS_2              4              122
  CLUS_3              2               25
  CLUS_4              2               41
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOHLH2 MUTATED        4      7      1      1
  SOHLH2 WILD-TYPE     67     69     33     62
D412V2, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              7               69
  CLUS_3              1               33
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOHLH2 MUTATED        0      3      3      4      2
  SOHLH2 WILD-TYPE     16     59     48     61     53
D412V3, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              3               59
  CLUS_3              3               48
  CLUS_4              4               61
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOHLH2 MUTATED        5      3      1      3
  SOHLH2 WILD-TYPE     93     41     49     54
D412V4, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              5               93
  CLUS_2              3               41
  CLUS_3              1               49
  CLUS_4              3               54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOHLH2 MUTATED        2      3      3      3      1
  SOHLH2 WILD-TYPE     60     56     37     34     58
D412V5, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              3               56
  CLUS_3              3               37
  CLUS_4              3               34
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SOHLH2 MUTATED        2      4      6
  SOHLH2 WILD-TYPE    104     50     91
D412V6, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              4               50
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SOHLH2 MUTATED        4      5      5
  SOHLH2 WILD-TYPE    119     90     66
D412V7, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              4              119
  CLUS_2              5               90
  CLUS_3              5               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SOHLH2 MUTATED        5      4      5
  SOHLH2 WILD-TYPE    152     59     64
D412V8, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              5              152
  CLUS_2              4               59
  CLUS_3              5               64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SOHLH2 MUTATED        3      3      0      2      0      3
  SOHLH2 WILD-TYPE     30     16     59     37     16     42
D412V9, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              3               16
  CLUS_3              0               59
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              3               42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SOHLH2 MUTATED        5      3      0      0      1      2
  SOHLH2 WILD-TYPE     42     36     35     32     22     33
D412V10, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              5               42
  CLUS_2              3               36
  CLUS_3              0               35
  CLUS_4              0               32
  CLUS_5              1               22
  CLUS_6              2               33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(413) Variable = SGK3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGK3 MUTATED        0      4      0      1      0
  SGK3 WILD-TYPE     79    122     27     42     12
D413V1, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            4            122
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGK3 MUTATED        0      3      0      0
  SGK3 WILD-TYPE     71     73     34     63
D413V2, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            3             73
  CLUS_3            0             34
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGK3 MUTATED        0      3      2      0      0
  SGK3 WILD-TYPE     16     59     49     65     55
D413V3, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            3             59
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            0             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGK3 MUTATED        0      3      2      0
  SGK3 WILD-TYPE     98     41     48     57
D413V4, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            0             98
  CLUS_2            3             41
  CLUS_3            2             48
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGK3 MUTATED        1      1      0      2      0
  SGK3 WILD-TYPE     61     58     40     35     59
D413V5, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            1             61
  CLUS_2            1             58
  CLUS_3            0             40
  CLUS_4            2             35
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SGK3 MUTATED        1      1      2
  SGK3 WILD-TYPE    105     53     95
D413V6, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            1             53
  CLUS_3            2             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SGK3 MUTATED        4      1      0
  SGK3 WILD-TYPE    119     94     71
D413V7, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            4            119
  CLUS_2            1             94
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SGK3 MUTATED        5      0      0
  SGK3 WILD-TYPE    152     63     69
D413V8, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            5            152
  CLUS_2            0             63
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SGK3 MUTATED        0      0      0      2      0      0
  SGK3 WILD-TYPE     33     19     59     37     16     45
D413V9, multiclass
[1] "Remove cluster labels:" "SGK3 MUTATED"          
clus
  SGK3 MUTATED SGK3 WILD-TYPE 
             2            209 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6453 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-7707     TCGA-BR-7715     TCGA-BR-7717     TCGA-BR-7723 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8077     TCGA-BR-8078 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8297 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-8360     TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-8371     TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8485 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8590 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J6     TCGA-BR-A4J7 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI     TCGA-BR-A4QL 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CD-8532     TCGA-CD-8534     TCGA-CD-8535     TCGA-CD-8536 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489     TCGA-CD-A48C 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CG-4437 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5717     TCGA-CG-5718 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-D7-8572     TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YY     TCGA-D7-A4Z0     TCGA-EQ-5647 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829     TCGA-FP-7998 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-FP-8631     TCGA-FP-A4BE     TCGA-HF-7132     TCGA-HF-7136 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604     TCGA-HU-8608 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC     TCGA-HU-A4GD 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GN     TCGA-HU-A4GQ 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-HU-A4GT     TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H2 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6     TCGA-HU-A4H8 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-IP-7968 
"SGK3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SGK3 MUTATED        0      0      0      0      2      0
  SGK3 WILD-TYPE     47     39     35     32     21     35
D413V10, multiclass
[1] "Remove cluster labels:" "SGK3 MUTATED"          
clus
  SGK3 MUTATED SGK3 WILD-TYPE 
             2            209 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6453 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-7707     TCGA-BR-7715     TCGA-BR-7717     TCGA-BR-7723 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8077     TCGA-BR-8078 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8297 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-8360     TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-8371     TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8485 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8590 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J6     TCGA-BR-A4J7 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI     TCGA-BR-A4QL 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CD-8532     TCGA-CD-8534     TCGA-CD-8535     TCGA-CD-8536 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489     TCGA-CD-A48C 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CG-4437 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5717     TCGA-CG-5718 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-D7-8572     TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YY     TCGA-D7-A4Z0     TCGA-EQ-5647 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829     TCGA-FP-7998 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-FP-8631     TCGA-FP-A4BE     TCGA-HF-7132     TCGA-HF-7136 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604     TCGA-HU-8608 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC     TCGA-HU-A4GD 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GN     TCGA-HU-A4GQ 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-HU-A4GT     TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H2 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6     TCGA-HU-A4H8 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" "SGK3 WILD-TYPE" 
    TCGA-IP-7968 
"SGK3 WILD-TYPE" 

Clustering(414) Variable = SLC25A17 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC25A17 MUTATED        0      2      1      0      1
  SLC25A17 WILD-TYPE     79    124     26     43     11
D414V1, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                0                 79
  CLUS_2                2                124
  CLUS_3                1                 26
  CLUS_4                0                 43
  CLUS_5                1                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A17 MUTATED        0      2      0      0
  SLC25A17 WILD-TYPE     71     74     34     63
D414V2, multiclass
[1] "Remove cluster labels:" "SLC25A17 MUTATED"      
clus
  SLC25A17 MUTATED SLC25A17 WILD-TYPE 
                 2                242 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6453         TCGA-BR-6454         TCGA-BR-6455 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6456         TCGA-BR-6457         TCGA-BR-6458 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6563         TCGA-BR-6564         TCGA-BR-6565 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6566         TCGA-BR-6705         TCGA-BR-6706 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6707         TCGA-BR-6710         TCGA-BR-6801 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7196         TCGA-BR-7197         TCGA-BR-7703 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7707         TCGA-BR-7715         TCGA-BR-7716 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7717         TCGA-BR-7722         TCGA-BR-7723 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7901         TCGA-BR-7957         TCGA-BR-7958 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7959         TCGA-BR-8058         TCGA-BR-8059 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8077         TCGA-BR-8078         TCGA-BR-8080 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8081         TCGA-BR-8284         TCGA-BR-8286 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8289         TCGA-BR-8291         TCGA-BR-8295 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8296         TCGA-BR-8297         TCGA-BR-8360 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8361         TCGA-BR-8363         TCGA-BR-8364 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8365         TCGA-BR-8366         TCGA-BR-8367 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8368         TCGA-BR-8369         TCGA-BR-8370 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8371         TCGA-BR-8372         TCGA-BR-8373 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8380         TCGA-BR-8381         TCGA-BR-8382 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8384         TCGA-BR-8483         TCGA-BR-8484 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8485         TCGA-BR-8486         TCGA-BR-8487 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8588         TCGA-BR-8589         TCGA-BR-8590 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8591         TCGA-BR-8592         TCGA-BR-8676 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8677         TCGA-BR-8678         TCGA-BR-8679 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8680         TCGA-BR-8682         TCGA-BR-8683 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8686         TCGA-BR-8687         TCGA-BR-8690 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A44T         TCGA-BR-A44U         TCGA-BR-A452 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A453         TCGA-BR-A4CQ         TCGA-BR-A4CR 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4CS         TCGA-BR-A4IU         TCGA-BR-A4IV 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4IY         TCGA-BR-A4IZ         TCGA-BR-A4J1 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4J2         TCGA-BR-A4J4         TCGA-BR-A4J6 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4J7         TCGA-BR-A4J8         TCGA-BR-A4PD 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4PE         TCGA-BR-A4PF         TCGA-BR-A4QI 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4QL         TCGA-BR-A4QM         TCGA-CD-5798 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-5799         TCGA-CD-5800         TCGA-CD-5801 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-5802         TCGA-CD-5803         TCGA-CD-5804 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CD-8524         TCGA-CD-8525 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8526         TCGA-CD-8527         TCGA-CD-8528 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8529         TCGA-CD-8530         TCGA-CD-8531 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8532         TCGA-CD-8534         TCGA-CD-8535 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8536         TCGA-CD-A486         TCGA-CD-A487 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-A489         TCGA-CD-A48A         TCGA-CD-A48C 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-A4MH         TCGA-CD-A4MI         TCGA-CD-A4MJ 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-4437         TCGA-CG-4441         TCGA-CG-5717 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5718         TCGA-CG-5719         TCGA-CG-5720 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5721         TCGA-CG-5722         TCGA-CG-5723 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5724         TCGA-CG-5726         TCGA-CG-5727 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5728         TCGA-CG-5730         TCGA-CG-5732 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5733         TCGA-CG-5734         TCGA-D7-5577 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-5578         TCGA-D7-5579         TCGA-D7-6518 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6519         TCGA-D7-6520         TCGA-D7-6521 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6522         TCGA-D7-6524         TCGA-D7-6525 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6526         TCGA-D7-6527         TCGA-D7-6528 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6815         TCGA-D7-6817         TCGA-D7-6818 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6820         TCGA-D7-6822         TCGA-D7-8570 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-8572         TCGA-D7-8573         TCGA-D7-8574 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-8575         TCGA-D7-8576         TCGA-D7-8578 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-8579         TCGA-D7-A4YT         TCGA-D7-A4YU 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-A4YV         TCGA-D7-A4YX         TCGA-D7-A4YY 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-A4Z0         TCGA-EQ-5647         TCGA-EQ-8122 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-EQ-A4SO         TCGA-F1-6177         TCGA-F1-6874 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-F1-6875         TCGA-F1-A448         TCGA-FP-7735 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-FP-7829         TCGA-FP-7916         TCGA-FP-7998 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-FP-8099         TCGA-FP-8209         TCGA-FP-8210 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-FP-8211         TCGA-FP-8631         TCGA-FP-A4BE 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-FP-A4BF         TCGA-HF-7132         TCGA-HF-7133 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HF-7136         TCGA-HJ-7597         TCGA-HU-8243 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-8245         TCGA-HU-8249         TCGA-HU-8602 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-8604         TCGA-HU-8608         TCGA-HU-8610 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4G2         TCGA-HU-A4G3         TCGA-HU-A4G6 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4G8         TCGA-HU-A4G9         TCGA-HU-A4GC 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4GD         TCGA-HU-A4GF         TCGA-HU-A4GH 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4GN         TCGA-HU-A4GP         TCGA-HU-A4GQ 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4GT         TCGA-HU-A4GU         TCGA-HU-A4GX 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4GY         TCGA-HU-A4H0         TCGA-HU-A4H2 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4H3         TCGA-HU-A4H4         TCGA-HU-A4H5 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4H6         TCGA-HU-A4H8         TCGA-HU-A4HD 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-IN-7806         TCGA-IN-7808         TCGA-IN-8462 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-IN-8663         TCGA-IP-7968 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC25A17 MUTATED        0      2      0      0      2
  SLC25A17 WILD-TYPE     16     60     51     65     53
D414V3, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                2                 60
  CLUS_3                0                 51
  CLUS_4                0                 65
  CLUS_5                2                 53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A17 MUTATED        2      1      1      0
  SLC25A17 WILD-TYPE     96     43     49     57
D414V4, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                2                 96
  CLUS_2                1                 43
  CLUS_3                1                 49
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC25A17 MUTATED        1      0      1      2      0
  SLC25A17 WILD-TYPE     61     59     39     35     59
D414V5, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                1                 61
  CLUS_2                0                 59
  CLUS_3                1                 39
  CLUS_4                2                 35
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A17 MUTATED        0      1      3
  SLC25A17 WILD-TYPE    106     53     94
D414V6, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                0                106
  CLUS_2                1                 53
  CLUS_3                3                 94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A17 MUTATED        3      1      0
  SLC25A17 WILD-TYPE    120     94     71
D414V7, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                3                120
  CLUS_2                1                 94
  CLUS_3                0                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A17 MUTATED        3      0      1
  SLC25A17 WILD-TYPE    154     63     68
D414V8, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                3                154
  CLUS_2                0                 63
  CLUS_3                1                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC25A17 MUTATED        0      1      0      1      0      0
  SLC25A17 WILD-TYPE     33     18     59     38     16     45
D414V9, multiclass
[1] "Remove cluster labels:" "SLC25A17 MUTATED"      
clus
  SLC25A17 MUTATED SLC25A17 WILD-TYPE 
                 2                209 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6453         TCGA-BR-6454         TCGA-BR-6455 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6456         TCGA-BR-6457         TCGA-BR-6458 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6563         TCGA-BR-6564         TCGA-BR-6565 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6566         TCGA-BR-6705         TCGA-BR-6706 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6707         TCGA-BR-6710         TCGA-BR-6801 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7196         TCGA-BR-7197         TCGA-BR-7703 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7707         TCGA-BR-7715         TCGA-BR-7717 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7723         TCGA-BR-7901         TCGA-BR-7957 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7958         TCGA-BR-7959         TCGA-BR-8058 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8059         TCGA-BR-8077         TCGA-BR-8078 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8080         TCGA-BR-8284         TCGA-BR-8286 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8289         TCGA-BR-8291         TCGA-BR-8295 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8296         TCGA-BR-8297         TCGA-BR-8360 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8361         TCGA-BR-8363         TCGA-BR-8364 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8365         TCGA-BR-8368         TCGA-BR-8369 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8370         TCGA-BR-8371         TCGA-BR-8372 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8373         TCGA-BR-8380         TCGA-BR-8381 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8382         TCGA-BR-8384         TCGA-BR-8483 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8485         TCGA-BR-8486         TCGA-BR-8487 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8588         TCGA-BR-8590         TCGA-BR-8591 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8592         TCGA-BR-8676         TCGA-BR-8677 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8678         TCGA-BR-8679         TCGA-BR-8680 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8682         TCGA-BR-8683         TCGA-BR-8687 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8690         TCGA-BR-A44T         TCGA-BR-A452 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A453         TCGA-BR-A4CQ         TCGA-BR-A4CR 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4CS         TCGA-BR-A4IU         TCGA-BR-A4IV 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4IY         TCGA-BR-A4IZ         TCGA-BR-A4J1 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4J6         TCGA-BR-A4J7         TCGA-BR-A4J8 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4PD         TCGA-BR-A4QI         TCGA-BR-A4QL 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4QM         TCGA-CD-5798         TCGA-CD-5799 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-5800         TCGA-CD-5801         TCGA-CD-5802 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-5803         TCGA-CD-5804         TCGA-CD-5813 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8524         TCGA-CD-8525         TCGA-CD-8526 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8527         TCGA-CD-8529         TCGA-CD-8530 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8531         TCGA-CD-8532         TCGA-CD-8534 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8535         TCGA-CD-8536         TCGA-CD-A486 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-A487         TCGA-CD-A489         TCGA-CD-A48C 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-A4MH         TCGA-CD-A4MI         TCGA-CG-4437 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-4441         TCGA-CG-4449         TCGA-CG-5717 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5718         TCGA-CG-5719         TCGA-CG-5720 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5721         TCGA-CG-5722         TCGA-CG-5723 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5724         TCGA-CG-5726         TCGA-CG-5727 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5728         TCGA-CG-5730         TCGA-CG-5732 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5733         TCGA-CG-5734         TCGA-D7-5577 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-5578         TCGA-D7-5579         TCGA-D7-6518 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6519         TCGA-D7-6520         TCGA-D7-6521 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6522         TCGA-D7-6524         TCGA-D7-6525 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6526         TCGA-D7-6527         TCGA-D7-6528 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6815         TCGA-D7-6817         TCGA-D7-6818 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6820         TCGA-D7-6822         TCGA-D7-8570 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-8572         TCGA-D7-8574         TCGA-D7-8575 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-8576         TCGA-D7-8578         TCGA-D7-8579 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-A4YT         TCGA-D7-A4YU         TCGA-D7-A4YV 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-A4YY         TCGA-D7-A4Z0         TCGA-EQ-5647 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-EQ-8122         TCGA-F1-6177         TCGA-F1-6874 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-F1-6875         TCGA-F1-A448         TCGA-FP-7735 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-FP-7829         TCGA-FP-7998         TCGA-FP-8099 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-FP-8209         TCGA-FP-8210         TCGA-FP-8211 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-FP-8631         TCGA-FP-A4BE         TCGA-HF-7132 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HF-7136         TCGA-HU-8243         TCGA-HU-8602 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-8604         TCGA-HU-8608         TCGA-HU-A4G3 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4G8         TCGA-HU-A4GC         TCGA-HU-A4GD 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4GF         TCGA-HU-A4GH         TCGA-HU-A4GN 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4GQ         TCGA-HU-A4GT         TCGA-HU-A4GX 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4GY         TCGA-HU-A4H2         TCGA-HU-A4H4 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4H5         TCGA-HU-A4H6         TCGA-HU-A4H8 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-IN-7806         TCGA-IN-7808         TCGA-IN-8462 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-IN-8663         TCGA-IP-7968 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC25A17 MUTATED        1      0      0      0      1      0
  SLC25A17 WILD-TYPE     46     39     35     32     22     35
D414V10, multiclass
[1] "Remove cluster labels:" "SLC25A17 MUTATED"      
clus
  SLC25A17 MUTATED SLC25A17 WILD-TYPE 
                 2                209 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6453         TCGA-BR-6454         TCGA-BR-6455 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6456         TCGA-BR-6457         TCGA-BR-6458 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6563         TCGA-BR-6564         TCGA-BR-6565 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6566         TCGA-BR-6705         TCGA-BR-6706 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6707         TCGA-BR-6710         TCGA-BR-6801 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7196         TCGA-BR-7197         TCGA-BR-7703 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7707         TCGA-BR-7715         TCGA-BR-7717 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7723         TCGA-BR-7901         TCGA-BR-7957 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7958         TCGA-BR-7959         TCGA-BR-8058 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8059         TCGA-BR-8077         TCGA-BR-8078 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8080         TCGA-BR-8284         TCGA-BR-8286 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8289         TCGA-BR-8291         TCGA-BR-8295 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8296         TCGA-BR-8297         TCGA-BR-8360 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8361         TCGA-BR-8363         TCGA-BR-8364 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8365         TCGA-BR-8368         TCGA-BR-8369 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8370         TCGA-BR-8371         TCGA-BR-8372 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8373         TCGA-BR-8380         TCGA-BR-8381 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8382         TCGA-BR-8384         TCGA-BR-8483 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8485         TCGA-BR-8486         TCGA-BR-8487 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8588         TCGA-BR-8590         TCGA-BR-8591 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8592         TCGA-BR-8676         TCGA-BR-8677 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8678         TCGA-BR-8679         TCGA-BR-8680 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8682         TCGA-BR-8683         TCGA-BR-8687 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8690         TCGA-BR-A44T         TCGA-BR-A452 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A453         TCGA-BR-A4CQ         TCGA-BR-A4CR 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4CS         TCGA-BR-A4IU         TCGA-BR-A4IV 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4IY         TCGA-BR-A4IZ         TCGA-BR-A4J1 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4J6         TCGA-BR-A4J7         TCGA-BR-A4J8 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4PD         TCGA-BR-A4QI         TCGA-BR-A4QL 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4QM         TCGA-CD-5798         TCGA-CD-5799 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-5800         TCGA-CD-5801         TCGA-CD-5802 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-5803         TCGA-CD-5804         TCGA-CD-5813 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8524         TCGA-CD-8525         TCGA-CD-8526 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8527         TCGA-CD-8529         TCGA-CD-8530 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8531         TCGA-CD-8532         TCGA-CD-8534 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8535         TCGA-CD-8536         TCGA-CD-A486 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-A487         TCGA-CD-A489         TCGA-CD-A48C 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-A4MH         TCGA-CD-A4MI         TCGA-CG-4437 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-4441         TCGA-CG-4449         TCGA-CG-5717 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5718         TCGA-CG-5719         TCGA-CG-5720 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5721         TCGA-CG-5722         TCGA-CG-5723 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5724         TCGA-CG-5726         TCGA-CG-5727 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5728         TCGA-CG-5730         TCGA-CG-5732 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5733         TCGA-CG-5734         TCGA-D7-5577 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-5578         TCGA-D7-5579         TCGA-D7-6518 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6519         TCGA-D7-6520         TCGA-D7-6521 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6522         TCGA-D7-6524         TCGA-D7-6525 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6526         TCGA-D7-6527         TCGA-D7-6528 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6815         TCGA-D7-6817         TCGA-D7-6818 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6820         TCGA-D7-6822         TCGA-D7-8570 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-8572         TCGA-D7-8574         TCGA-D7-8575 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-8576         TCGA-D7-8578         TCGA-D7-8579 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-A4YT         TCGA-D7-A4YU         TCGA-D7-A4YV 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-A4YY         TCGA-D7-A4Z0         TCGA-EQ-5647 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-EQ-8122         TCGA-F1-6177         TCGA-F1-6874 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-F1-6875         TCGA-F1-A448         TCGA-FP-7735 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-FP-7829         TCGA-FP-7998         TCGA-FP-8099 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-FP-8209         TCGA-FP-8210         TCGA-FP-8211 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-FP-8631         TCGA-FP-A4BE         TCGA-HF-7132 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HF-7136         TCGA-HU-8243         TCGA-HU-8602 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-8604         TCGA-HU-8608         TCGA-HU-A4G3 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4G8         TCGA-HU-A4GC         TCGA-HU-A4GD 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4GF         TCGA-HU-A4GH         TCGA-HU-A4GN 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4GQ         TCGA-HU-A4GT         TCGA-HU-A4GX 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4GY         TCGA-HU-A4H2         TCGA-HU-A4H4 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4H5         TCGA-HU-A4H6         TCGA-HU-A4H8 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-IN-7806         TCGA-IN-7808         TCGA-IN-8462 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-IN-8663         TCGA-IP-7968 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 

Clustering(415) Variable = MKL1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MKL1 MUTATED        2      9      1      0      1
  MKL1 WILD-TYPE     77    117     26     43     11
D415V1, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            2             77
  CLUS_2            9            117
  CLUS_3            1             26
  CLUS_4            0             43
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKL1 MUTATED        1      7      1      1
  MKL1 WILD-TYPE     70     69     33     62
D415V2, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            7             69
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MKL1 MUTATED        1      4      1      0      4
  MKL1 WILD-TYPE     15     58     50     65     51
D415V3, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            4             58
  CLUS_3            1             50
  CLUS_4            0             65
  CLUS_5            4             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKL1 MUTATED        2      5      3      0
  MKL1 WILD-TYPE     96     39     47     57
D415V4, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            5             39
  CLUS_3            3             47
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MKL1 MUTATED        5      0      1      2      1
  MKL1 WILD-TYPE     57     59     39     35     58
D415V5, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            5             57
  CLUS_2            0             59
  CLUS_3            1             39
  CLUS_4            2             35
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MKL1 MUTATED        1      0      8
  MKL1 WILD-TYPE    105     54     89
D415V6, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            8             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MKL1 MUTATED        9      2      2
  MKL1 WILD-TYPE    114     93     69
D415V7, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            9            114
  CLUS_2            2             93
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MKL1 MUTATED        9      2      2
  MKL1 WILD-TYPE    148     61     67
D415V8, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            9            148
  CLUS_2            2             61
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MKL1 MUTATED        1      3      3      2      0      1
  MKL1 WILD-TYPE     32     16     56     37     16     44
D415V9, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            3             16
  CLUS_3            3             56
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MKL1 MUTATED        3      1      3      2      0      1
  MKL1 WILD-TYPE     44     38     32     30     23     34
D415V10, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            1             38
  CLUS_3            3             32
  CLUS_4            2             30
  CLUS_5            0             23
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(416) Variable = ACP1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACP1 MUTATED        0      5      0      0      0
  ACP1 WILD-TYPE     79    121     27     43     12
D416V1, multiclass
        clus
vv       ACP1 MUTATED ACP1 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            5            121
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACP1 MUTATED        0      4      0      0
  ACP1 WILD-TYPE     71     72     34     63
D416V2, multiclass
        clus
vv       ACP1 MUTATED ACP1 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            4             72
  CLUS_3            0             34
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACP1 MUTATED        0      2      1      0      0
  ACP1 WILD-TYPE     16     60     50     65     55
D416V3, multiclass
        clus
vv       ACP1 MUTATED ACP1 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            2             60
  CLUS_3            1             50
  CLUS_4            0             65
  CLUS_5            0             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACP1 MUTATED        0      2      0      1
  ACP1 WILD-TYPE     98     42     50     56
D416V4, multiclass
        clus
vv       ACP1 MUTATED ACP1 WILD-TYPE
  CLUS_1            0             98
  CLUS_2            2             42
  CLUS_3            0             50
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACP1 MUTATED        3      1      0      0      0
  ACP1 WILD-TYPE     59     58     40     37     59
D416V5, multiclass
        clus
vv       ACP1 MUTATED ACP1 WILD-TYPE
  CLUS_1            3             59
  CLUS_2            1             58
  CLUS_3            0             40
  CLUS_4            0             37
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACP1 MUTATED        0      1      3
  ACP1 WILD-TYPE    106     53     94
D416V6, multiclass
        clus
vv       ACP1 MUTATED ACP1 WILD-TYPE
  CLUS_1            0            106
  CLUS_2            1             53
  CLUS_3            3             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACP1 MUTATED        3      0      2
  ACP1 WILD-TYPE    120     95     69
D416V7, multiclass
        clus
vv       ACP1 MUTATED ACP1 WILD-TYPE
  CLUS_1            3            120
  CLUS_2            0             95
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACP1 MUTATED        4      0      1
  ACP1 WILD-TYPE    153     63     68
D416V8, multiclass
        clus
vv       ACP1 MUTATED ACP1 WILD-TYPE
  CLUS_1            4            153
  CLUS_2            0             63
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACP1 MUTATED        0      3      0      1      0      0
  ACP1 WILD-TYPE     33     16     59     38     16     45
D416V9, multiclass
        clus
vv       ACP1 MUTATED ACP1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            3             16
  CLUS_3            0             59
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACP1 MUTATED        3      0      0      1      0      0
  ACP1 WILD-TYPE     44     39     35     31     23     35
D416V10, multiclass
        clus
vv       ACP1 MUTATED ACP1 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            0             39
  CLUS_3            0             35
  CLUS_4            1             31
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(417) Variable = KIAA1217 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1217 MUTATED        2     12      0      3      1
  KIAA1217 WILD-TYPE     77    114     27     40     11
D417V1, multiclass
        clus
vv       KIAA1217 MUTATED KIAA1217 WILD-TYPE
  CLUS_1                2                 77
  CLUS_2               12                114
  CLUS_3                0                 27
  CLUS_4                3                 40
  CLUS_5                1                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1217 MUTATED        2     12      1      2
  KIAA1217 WILD-TYPE     69     64     33     61
D417V2, multiclass
        clus
vv       KIAA1217 MUTATED KIAA1217 WILD-TYPE
  CLUS_1                2                 69
  CLUS_2               12                 64
  CLUS_3                1                 33
  CLUS_4                2                 61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1217 MUTATED        0      5      7      1      3
  KIAA1217 WILD-TYPE     16     57     44     64     52
D417V3, multiclass
        clus
vv       KIAA1217 MUTATED KIAA1217 WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                5                 57
  CLUS_3                7                 44
  CLUS_4                1                 64
  CLUS_5                3                 52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1217 MUTATED        6      7      3      0
  KIAA1217 WILD-TYPE     92     37     47     57
D417V4, multiclass
        clus
vv       KIAA1217 MUTATED KIAA1217 WILD-TYPE
  CLUS_1                6                 92
  CLUS_2                7                 37
  CLUS_3                3                 47
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1217 MUTATED        8      1      1      2      1
  KIAA1217 WILD-TYPE     54     58     39     35     58
D417V5, multiclass
        clus
vv       KIAA1217 MUTATED KIAA1217 WILD-TYPE
  CLUS_1                8                 54
  CLUS_2                1                 58
  CLUS_3                1                 39
  CLUS_4                2                 35
  CLUS_5                1                 58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1217 MUTATED        1      1     11
  KIAA1217 WILD-TYPE    105     53     86
D417V6, multiclass
        clus
vv       KIAA1217 MUTATED KIAA1217 WILD-TYPE
  CLUS_1                1                105
  CLUS_2                1                 53
  CLUS_3               11                 86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1217 MUTATED       12      2      5
  KIAA1217 WILD-TYPE    111     93     66
D417V7, multiclass
        clus
vv       KIAA1217 MUTATED KIAA1217 WILD-TYPE
  CLUS_1               12                111
  CLUS_2                2                 93
  CLUS_3                5                 66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1217 MUTATED       14      2      3
  KIAA1217 WILD-TYPE    143     61     66
D417V8, multiclass
        clus
vv       KIAA1217 MUTATED KIAA1217 WILD-TYPE
  CLUS_1               14                143
  CLUS_2                2                 61
  CLUS_3                3                 66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1217 MUTATED        3      0      3      6      0      2
  KIAA1217 WILD-TYPE     30     19     56     33     16     43
D417V9, multiclass
        clus
vv       KIAA1217 MUTATED KIAA1217 WILD-TYPE
  CLUS_1                3                 30
  CLUS_2                0                 19
  CLUS_3                3                 56
  CLUS_4                6                 33
  CLUS_5                0                 16
  CLUS_6                2                 43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1217 MUTATED        3      1      3      3      2      2
  KIAA1217 WILD-TYPE     44     38     32     29     21     33
D417V10, multiclass
        clus
vv       KIAA1217 MUTATED KIAA1217 WILD-TYPE
  CLUS_1                3                 44
  CLUS_2                1                 38
  CLUS_3                3                 32
  CLUS_4                3                 29
  CLUS_5                2                 21
  CLUS_6                2                 33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(418) Variable = YLPM1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YLPM1 MUTATED        1     15      0      1      1
  YLPM1 WILD-TYPE     78    111     27     42     11
D418V1, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             1              78
  CLUS_2            15             111
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YLPM1 MUTATED        0      7      4      2
  YLPM1 WILD-TYPE     71     69     30     61
D418V2, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             7              69
  CLUS_3             4              30
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YLPM1 MUTATED        1     10      2      2      2
  YLPM1 WILD-TYPE     15     52     49     63     53
D418V3, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2            10              52
  CLUS_3             2              49
  CLUS_4             2              63
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YLPM1 MUTATED        2      6      7      2
  YLPM1 WILD-TYPE     96     38     43     55
D418V4, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             6              38
  CLUS_3             7              43
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YLPM1 MUTATED        8      2      1      3      1
  YLPM1 WILD-TYPE     54     57     39     34     58
D418V5, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             8              54
  CLUS_2             2              57
  CLUS_3             1              39
  CLUS_4             3              34
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YLPM1 MUTATED        4      2      9
  YLPM1 WILD-TYPE    102     52     88
D418V6, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             2              52
  CLUS_3             9              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YLPM1 MUTATED       15      2      1
  YLPM1 WILD-TYPE    108     93     70
D418V7, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1            15             108
  CLUS_2             2              93
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YLPM1 MUTATED       15      2      1
  YLPM1 WILD-TYPE    142     61     68
D418V8, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1            15             142
  CLUS_2             2              61
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  YLPM1 MUTATED        3      0      6      3      0      0
  YLPM1 WILD-TYPE     30     19     53     36     16     45
D418V9, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              19
  CLUS_3             6              53
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  YLPM1 MUTATED        3      0      4      1      3      1
  YLPM1 WILD-TYPE     44     39     31     31     20     34
D418V10, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             4              31
  CLUS_4             1              31
  CLUS_5             3              20
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(419) Variable = NEK7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEK7 MUTATED        0      4      0      0      0
  NEK7 WILD-TYPE     79    122     27     43     12
D419V1, multiclass
        clus
vv       NEK7 MUTATED NEK7 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            4            122
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEK7 MUTATED        1      2      0      0
  NEK7 WILD-TYPE     70     74     34     63
D419V2, multiclass
        clus
vv       NEK7 MUTATED NEK7 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            2             74
  CLUS_3            0             34
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEK7 MUTATED        0      1      2      0      1
  NEK7 WILD-TYPE     16     61     49     65     54
D419V3, multiclass
        clus
vv       NEK7 MUTATED NEK7 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            1             61
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEK7 MUTATED        1      2      1      0
  NEK7 WILD-TYPE     97     42     49     57
D419V4, multiclass
        clus
vv       NEK7 MUTATED NEK7 WILD-TYPE
  CLUS_1            1             97
  CLUS_2            2             42
  CLUS_3            1             49
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEK7 MUTATED        0      0      2      2      0
  NEK7 WILD-TYPE     62     59     38     35     59
D419V5, multiclass
        clus
vv       NEK7 MUTATED NEK7 WILD-TYPE
  CLUS_1            0             62
  CLUS_2            0             59
  CLUS_3            2             38
  CLUS_4            2             35
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEK7 MUTATED        0      0      4
  NEK7 WILD-TYPE    106     54     93
D419V6, multiclass
        clus
vv       NEK7 MUTATED NEK7 WILD-TYPE
  CLUS_1            0            106
  CLUS_2            0             54
  CLUS_3            4             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEK7 MUTATED        4      0      0
  NEK7 WILD-TYPE    119     95     71
D419V7, multiclass
        clus
vv       NEK7 MUTATED NEK7 WILD-TYPE
  CLUS_1            4            119
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEK7 MUTATED        3      0      1
  NEK7 WILD-TYPE    154     63     68
D419V8, multiclass
        clus
vv       NEK7 MUTATED NEK7 WILD-TYPE
  CLUS_1            3            154
  CLUS_2            0             63
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NEK7 MUTATED        0      1      2      0      0      0
  NEK7 WILD-TYPE     33     18     57     39     16     45
D419V9, multiclass
        clus
vv       NEK7 MUTATED NEK7 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             18
  CLUS_3            2             57
  CLUS_4            0             39
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NEK7 MUTATED        3      0      0      0      0      0
  NEK7 WILD-TYPE     44     39     35     32     23     35
D419V10, multiclass
        clus
vv       NEK7 MUTATED NEK7 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            0             39
  CLUS_3            0             35
  CLUS_4            0             32
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(420) Variable = SAP130 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SAP130 MUTATED        0      8      0      2      1
  SAP130 WILD-TYPE     79    118     27     41     11
D420V1, multiclass
        clus
vv       SAP130 MUTATED SAP130 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              8              118
  CLUS_3              0               27
  CLUS_4              2               41
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAP130 MUTATED        0      7      1      0
  SAP130 WILD-TYPE     71     69     33     63
D420V2, multiclass
        clus
vv       SAP130 MUTATED SAP130 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              7               69
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SAP130 MUTATED        0      3      2      1      2
  SAP130 WILD-TYPE     16     59     49     64     53
D420V3, multiclass
        clus
vv       SAP130 MUTATED SAP130 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              3               59
  CLUS_3              2               49
  CLUS_4              1               64
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAP130 MUTATED        0      6      1      1
  SAP130 WILD-TYPE     98     38     49     56
D420V4, multiclass
        clus
vv       SAP130 MUTATED SAP130 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              6               38
  CLUS_3              1               49
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SAP130 MUTATED        8      1      0      2      0
  SAP130 WILD-TYPE     54     58     40     35     59
D420V5, multiclass
        clus
vv       SAP130 MUTATED SAP130 WILD-TYPE
  CLUS_1              8               54
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              2               35
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SAP130 MUTATED        2      0      9
  SAP130 WILD-TYPE    104     54     88
D420V6, multiclass
        clus
vv       SAP130 MUTATED SAP130 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              0               54
  CLUS_3              9               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SAP130 MUTATED        9      0      2
  SAP130 WILD-TYPE    114     95     69
D420V7, multiclass
        clus
vv       SAP130 MUTATED SAP130 WILD-TYPE
  CLUS_1              9              114
  CLUS_2              0               95
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SAP130 MUTATED       11      0      0
  SAP130 WILD-TYPE    146     63     69
D420V8, multiclass
        clus
vv       SAP130 MUTATED SAP130 WILD-TYPE
  CLUS_1             11              146
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SAP130 MUTATED        0      2      1      3      0      0
  SAP130 WILD-TYPE     33     17     58     36     16     45
D420V9, multiclass
        clus
vv       SAP130 MUTATED SAP130 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              2               17
  CLUS_3              1               58
  CLUS_4              3               36
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SAP130 MUTATED        3      0      1      2      0      0
  SAP130 WILD-TYPE     44     39     34     30     23     35
D420V10, multiclass
        clus
vv       SAP130 MUTATED SAP130 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              2               30
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(421) Variable = TLR4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TLR4 MUTATED        8      7      2      3      1
  TLR4 WILD-TYPE     71    119     25     40     11
D421V1, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            8             71
  CLUS_2            7            119
  CLUS_3            2             25
  CLUS_4            3             40
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TLR4 MUTATED        5     10      1      1
  TLR4 WILD-TYPE     66     66     33     62
D421V2, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            5             66
  CLUS_2           10             66
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TLR4 MUTATED        2      8      4      3      2
  TLR4 WILD-TYPE     14     54     47     62     53
D421V3, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            8             54
  CLUS_3            4             47
  CLUS_4            3             62
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TLR4 MUTATED        9      4      6      0
  TLR4 WILD-TYPE     89     40     44     57
D421V4, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            9             89
  CLUS_2            4             40
  CLUS_3            6             44
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TLR4 MUTATED        4      2      1      5      7
  TLR4 WILD-TYPE     58     57     39     32     52
D421V5, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            2             57
  CLUS_3            1             39
  CLUS_4            5             32
  CLUS_5            7             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TLR4 MUTATED        9      4      6
  TLR4 WILD-TYPE     97     50     91
D421V6, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            9             97
  CLUS_2            4             50
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TLR4 MUTATED       10      3      8
  TLR4 WILD-TYPE    113     92     63
D421V7, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1           10            113
  CLUS_2            3             92
  CLUS_3            8             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TLR4 MUTATED       11      1      9
  TLR4 WILD-TYPE    146     62     60
D421V8, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1           11            146
  CLUS_2            1             62
  CLUS_3            9             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TLR4 MUTATED        3      3      5      3      2      1
  TLR4 WILD-TYPE     30     16     54     36     14     44
D421V9, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            3             16
  CLUS_3            5             54
  CLUS_4            3             36
  CLUS_5            2             14
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TLR4 MUTATED        5      3      2      2      2      3
  TLR4 WILD-TYPE     42     36     33     30     21     32
D421V10, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            5             42
  CLUS_2            3             36
  CLUS_3            2             33
  CLUS_4            2             30
  CLUS_5            2             21
  CLUS_6            3             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(422) Variable = DCHS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DCHS1 MUTATED        4     18      2      4      1
  DCHS1 WILD-TYPE     75    108     25     39     11
D422V1, multiclass
        clus
vv       DCHS1 MUTATED DCHS1 WILD-TYPE
  CLUS_1             4              75
  CLUS_2            18             108
  CLUS_3             2              25
  CLUS_4             4              39
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCHS1 MUTATED        4     17      2      2
  DCHS1 WILD-TYPE     67     59     32     61
D422V2, multiclass
        clus
vv       DCHS1 MUTATED DCHS1 WILD-TYPE
  CLUS_1             4              67
  CLUS_2            17              59
  CLUS_3             2              32
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DCHS1 MUTATED        2     11      6      0      8
  DCHS1 WILD-TYPE     14     51     45     65     47
D422V3, multiclass
        clus
vv       DCHS1 MUTATED DCHS1 WILD-TYPE
  CLUS_1             2              14
  CLUS_2            11              51
  CLUS_3             6              45
  CLUS_4             0              65
  CLUS_5             8              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DCHS1 MUTATED        6     13      6      2
  DCHS1 WILD-TYPE     92     31     44     55
D422V4, multiclass
        clus
vv       DCHS1 MUTATED DCHS1 WILD-TYPE
  CLUS_1             6              92
  CLUS_2            13              31
  CLUS_3             6              44
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DCHS1 MUTATED        9      2      4      7      2
  DCHS1 WILD-TYPE     53     57     36     30     57
D422V5, multiclass
        clus
vv       DCHS1 MUTATED DCHS1 WILD-TYPE
  CLUS_1             9              53
  CLUS_2             2              57
  CLUS_3             4              36
  CLUS_4             7              30
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCHS1 MUTATED        6      2     16
  DCHS1 WILD-TYPE    100     52     81
D422V6, multiclass
        clus
vv       DCHS1 MUTATED DCHS1 WILD-TYPE
  CLUS_1             6             100
  CLUS_2             2              52
  CLUS_3            16              81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCHS1 MUTATED       19      4      6
  DCHS1 WILD-TYPE    104     91     65
D422V7, multiclass
        clus
vv       DCHS1 MUTATED DCHS1 WILD-TYPE
  CLUS_1            19             104
  CLUS_2             4              91
  CLUS_3             6              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DCHS1 MUTATED       21      3      5
  DCHS1 WILD-TYPE    136     60     64
D422V8, multiclass
        clus
vv       DCHS1 MUTATED DCHS1 WILD-TYPE
  CLUS_1            21             136
  CLUS_2             3              60
  CLUS_3             5              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DCHS1 MUTATED        4      2      9      3      0      2
  DCHS1 WILD-TYPE     29     17     50     36     16     43
D422V9, multiclass
        clus
vv       DCHS1 MUTATED DCHS1 WILD-TYPE
  CLUS_1             4              29
  CLUS_2             2              17
  CLUS_3             9              50
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             2              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DCHS1 MUTATED       10      2      6      1      1      0
  DCHS1 WILD-TYPE     37     37     29     31     22     35
D422V10, multiclass
        clus
vv       DCHS1 MUTATED DCHS1 WILD-TYPE
  CLUS_1            10              37
  CLUS_2             2              37
  CLUS_3             6              29
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(423) Variable = IRS1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS1 MUTATED        2     15      2      0      1
  IRS1 WILD-TYPE     77    111     25     43     11
D423V1, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            2             77
  CLUS_2           15            111
  CLUS_3            2             25
  CLUS_4            0             43
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS1 MUTATED        1     10      2      4
  IRS1 WILD-TYPE     70     66     32     59
D423V2, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            1             70
  CLUS_2           10             66
  CLUS_3            2             32
  CLUS_4            4             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS1 MUTATED        3      4      2      1      7
  IRS1 WILD-TYPE     13     58     49     64     48
D423V3, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            3             13
  CLUS_2            4             58
  CLUS_3            2             49
  CLUS_4            1             64
  CLUS_5            7             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS1 MUTATED        5      8      2      2
  IRS1 WILD-TYPE     93     36     48     55
D423V4, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            5             93
  CLUS_2            8             36
  CLUS_3            2             48
  CLUS_4            2             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS1 MUTATED       11      2      2      2      1
  IRS1 WILD-TYPE     51     57     38     35     58
D423V5, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1           11             51
  CLUS_2            2             57
  CLUS_3            2             38
  CLUS_4            2             35
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS1 MUTATED        4      2     12
  IRS1 WILD-TYPE    102     52     85
D423V6, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            4            102
  CLUS_2            2             52
  CLUS_3           12             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS1 MUTATED       15      4      1
  IRS1 WILD-TYPE    108     91     70
D423V7, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1           15            108
  CLUS_2            4             91
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS1 MUTATED       15      4      1
  IRS1 WILD-TYPE    142     59     68
D423V8, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1           15            142
  CLUS_2            4             59
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IRS1 MUTATED        3      1      7      3      0      1
  IRS1 WILD-TYPE     30     18     52     36     16     44
D423V9, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            1             18
  CLUS_3            7             52
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IRS1 MUTATED        5      1      4      3      2      0
  IRS1 WILD-TYPE     42     38     31     29     21     35
D423V10, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            5             42
  CLUS_2            1             38
  CLUS_3            4             31
  CLUS_4            3             29
  CLUS_5            2             21
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(424) Variable = DDX43 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX43 MUTATED        1      7      1      0      1
  DDX43 WILD-TYPE     78    119     26     43     11
D424V1, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             7             119
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX43 MUTATED        3      3      1      0
  DDX43 WILD-TYPE     68     73     33     63
D424V2, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             3              73
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX43 MUTATED        0      1      0      1      5
  DDX43 WILD-TYPE     16     61     51     64     50
D424V3, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              61
  CLUS_3             0              51
  CLUS_4             1              64
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX43 MUTATED        1      3      1      2
  DDX43 WILD-TYPE     97     41     49     55
D424V4, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             3              41
  CLUS_3             1              49
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX43 MUTATED        2      1      2      2      2
  DDX43 WILD-TYPE     60     58     38     35     57
D424V5, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              58
  CLUS_3             2              38
  CLUS_4             2              35
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX43 MUTATED        4      1      4
  DDX43 WILD-TYPE    102     53     93
D424V6, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             1              53
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX43 MUTATED        7      1      2
  DDX43 WILD-TYPE    116     94     69
D424V7, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             7             116
  CLUS_2             1              94
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX43 MUTATED        7      1      2
  DDX43 WILD-TYPE    150     62     67
D424V8, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             7             150
  CLUS_2             1              62
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DDX43 MUTATED        1      1      1      2      1      0
  DDX43 WILD-TYPE     32     18     58     37     15     45
D424V9, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             1              58
  CLUS_4             2              37
  CLUS_5             1              15
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DDX43 MUTATED        3      0      1      1      0      1
  DDX43 WILD-TYPE     44     39     34     31     23     34
D424V10, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(425) Variable = MPRIP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MPRIP MUTATED        1     11      2      0      0
  MPRIP WILD-TYPE     78    115     25     43     12
D425V1, multiclass
        clus
vv       MPRIP MUTATED MPRIP WILD-TYPE
  CLUS_1             1              78
  CLUS_2            11             115
  CLUS_3             2              25
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPRIP MUTATED        0      8      0      2
  MPRIP WILD-TYPE     71     68     34     61
D425V2, multiclass
        clus
vv       MPRIP MUTATED MPRIP WILD-TYPE
  CLUS_1             0              71
  CLUS_2             8              68
  CLUS_3             0              34
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MPRIP MUTATED        1      4      4      0      4
  MPRIP WILD-TYPE     15     58     47     65     51
D425V3, multiclass
        clus
vv       MPRIP MUTATED MPRIP WILD-TYPE
  CLUS_1             1              15
  CLUS_2             4              58
  CLUS_3             4              47
  CLUS_4             0              65
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPRIP MUTATED        5      7      1      0
  MPRIP WILD-TYPE     93     37     49     57
D425V4, multiclass
        clus
vv       MPRIP MUTATED MPRIP WILD-TYPE
  CLUS_1             5              93
  CLUS_2             7              37
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MPRIP MUTATED        2      1      3      4      1
  MPRIP WILD-TYPE     60     58     37     33     58
D425V5, multiclass
        clus
vv       MPRIP MUTATED MPRIP WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              58
  CLUS_3             3              37
  CLUS_4             4              33
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MPRIP MUTATED        3      0      8
  MPRIP WILD-TYPE    103     54     89
D425V6, multiclass
        clus
vv       MPRIP MUTATED MPRIP WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MPRIP MUTATED       11      3      0
  MPRIP WILD-TYPE    112     92     71
D425V7, multiclass
        clus
vv       MPRIP MUTATED MPRIP WILD-TYPE
  CLUS_1            11             112
  CLUS_2             3              92
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MPRIP MUTATED       12      0      2
  MPRIP WILD-TYPE    145     63     67
D425V8, multiclass
        clus
vv       MPRIP MUTATED MPRIP WILD-TYPE
  CLUS_1            12             145
  CLUS_2             0              63
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MPRIP MUTATED        2      2      4      1      0      1
  MPRIP WILD-TYPE     31     17     55     38     16     44
D425V9, multiclass
        clus
vv       MPRIP MUTATED MPRIP WILD-TYPE
  CLUS_1             2              31
  CLUS_2             2              17
  CLUS_3             4              55
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MPRIP MUTATED        5      1      2      0      1      1
  MPRIP WILD-TYPE     42     38     33     32     22     34
D425V10, multiclass
        clus
vv       MPRIP MUTATED MPRIP WILD-TYPE
  CLUS_1             5              42
  CLUS_2             1              38
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(426) Variable = KRT24 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT24 MUTATED        1      2      0      2      0
  KRT24 WILD-TYPE     78    124     27     41     12
D426V1, multiclass
        clus
vv       KRT24 MUTATED KRT24 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             2             124
  CLUS_3             0              27
  CLUS_4             2              41
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT24 MUTATED        1      2      2      0
  KRT24 WILD-TYPE     70     74     32     63
D426V2, multiclass
        clus
vv       KRT24 MUTATED KRT24 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             2              74
  CLUS_3             2              32
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT24 MUTATED        0      2      1      0      1
  KRT24 WILD-TYPE     16     60     50     65     54
D426V3, multiclass
        clus
vv       KRT24 MUTATED KRT24 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT24 MUTATED        1      1      2      0
  KRT24 WILD-TYPE     97     43     48     57
D426V4, multiclass
        clus
vv       KRT24 MUTATED KRT24 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             1              43
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT24 MUTATED        2      0      1      1      0
  KRT24 WILD-TYPE     60     59     39     36     59
D426V5, multiclass
        clus
vv       KRT24 MUTATED KRT24 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT24 MUTATED        0      0      4
  KRT24 WILD-TYPE    106     54     93
D426V6, multiclass
        clus
vv       KRT24 MUTATED KRT24 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              54
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT24 MUTATED        4      0      1
  KRT24 WILD-TYPE    119     95     70
D426V7, multiclass
        clus
vv       KRT24 MUTATED KRT24 WILD-TYPE
  CLUS_1             4             119
  CLUS_2             0              95
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT24 MUTATED        4      0      1
  KRT24 WILD-TYPE    153     63     68
D426V8, multiclass
        clus
vv       KRT24 MUTATED KRT24 WILD-TYPE
  CLUS_1             4             153
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRT24 MUTATED        1      0      1      2      0      0
  KRT24 WILD-TYPE     32     19     58     37     16     45
D426V9, multiclass
        clus
vv       KRT24 MUTATED KRT24 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             1              58
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRT24 MUTATED        1      0      1      0      1      1
  KRT24 WILD-TYPE     46     39     34     32     22     34
D426V10, multiclass
        clus
vv       KRT24 MUTATED KRT24 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(427) Variable = TIMM44 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TIMM44 MUTATED        0      4      0      0      1
  TIMM44 WILD-TYPE     79    122     27     43     11
D427V1, multiclass
        clus
vv       TIMM44 MUTATED TIMM44 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              4              122
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIMM44 MUTATED        0      5      0      0
  TIMM44 WILD-TYPE     71     71     34     63
D427V2, multiclass
        clus
vv       TIMM44 MUTATED TIMM44 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              5               71
  CLUS_3              0               34
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TIMM44 MUTATED        0      2      0      0      2
  TIMM44 WILD-TYPE     16     60     51     65     53
D427V3, multiclass
        clus
vv       TIMM44 MUTATED TIMM44 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              2               60
  CLUS_3              0               51
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIMM44 MUTATED        0      2      2      0
  TIMM44 WILD-TYPE     98     42     48     57
D427V4, multiclass
        clus
vv       TIMM44 MUTATED TIMM44 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              2               42
  CLUS_3              2               48
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TIMM44 MUTATED        4      0      0      1      0
  TIMM44 WILD-TYPE     58     59     40     36     59
D427V5, multiclass
        clus
vv       TIMM44 MUTATED TIMM44 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TIMM44 MUTATED        0      0      5
  TIMM44 WILD-TYPE    106     54     92
D427V6, multiclass
        clus
vv       TIMM44 MUTATED TIMM44 WILD-TYPE
  CLUS_1              0              106
  CLUS_2              0               54
  CLUS_3              5               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TIMM44 MUTATED        3      0      2
  TIMM44 WILD-TYPE    120     95     69
D427V7, multiclass
        clus
vv       TIMM44 MUTATED TIMM44 WILD-TYPE
  CLUS_1              3              120
  CLUS_2              0               95
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TIMM44 MUTATED        5      0      0
  TIMM44 WILD-TYPE    152     63     69
D427V8, multiclass
        clus
vv       TIMM44 MUTATED TIMM44 WILD-TYPE
  CLUS_1              5              152
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TIMM44 MUTATED        1      0      1      2      0      0
  TIMM44 WILD-TYPE     32     19     58     37     16     45
D427V9, multiclass
        clus
vv       TIMM44 MUTATED TIMM44 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               19
  CLUS_3              1               58
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TIMM44 MUTATED        3      0      0      1      0      0
  TIMM44 WILD-TYPE     44     39     35     31     23     35
D427V10, multiclass
        clus
vv       TIMM44 MUTATED TIMM44 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              0               35
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(428) Variable = UBC MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBC MUTATED        1      5      1      0      0
  UBC WILD-TYPE     78    121     26     43     12
D428V1, multiclass
        clus
vv       UBC MUTATED UBC WILD-TYPE
  CLUS_1           1            78
  CLUS_2           5           121
  CLUS_3           1            26
  CLUS_4           0            43
  CLUS_5           0            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBC MUTATED        0      1      2      1
  UBC WILD-TYPE     71     75     32     62
D428V2, multiclass
        clus
vv       UBC MUTATED UBC WILD-TYPE
  CLUS_1           0            71
  CLUS_2           1            75
  CLUS_3           2            32
  CLUS_4           1            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBC MUTATED        1      4      1      0      1
  UBC WILD-TYPE     15     58     50     65     54
D428V3, multiclass
        clus
vv       UBC MUTATED UBC WILD-TYPE
  CLUS_1           1            15
  CLUS_2           4            58
  CLUS_3           1            50
  CLUS_4           0            65
  CLUS_5           1            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBC MUTATED        1      4      2      0
  UBC WILD-TYPE     97     40     48     57
D428V4, multiclass
        clus
vv       UBC MUTATED UBC WILD-TYPE
  CLUS_1           1            97
  CLUS_2           4            40
  CLUS_3           2            48
  CLUS_4           0            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBC MUTATED        3      0      1      0      0
  UBC WILD-TYPE     59     59     39     37     59
D428V5, multiclass
        clus
vv       UBC MUTATED UBC WILD-TYPE
  CLUS_1           3            59
  CLUS_2           0            59
  CLUS_3           1            39
  CLUS_4           0            37
  CLUS_5           0            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  UBC MUTATED        0      0      4
  UBC WILD-TYPE    106     54     93
D428V6, multiclass
        clus
vv       UBC MUTATED UBC WILD-TYPE
  CLUS_1           0           106
  CLUS_2           0            54
  CLUS_3           4            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  UBC MUTATED        6      1      0
  UBC WILD-TYPE    117     94     71
D428V7, multiclass
        clus
vv       UBC MUTATED UBC WILD-TYPE
  CLUS_1           6           117
  CLUS_2           1            94
  CLUS_3           0            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  UBC MUTATED        6      1      0
  UBC WILD-TYPE    151     62     69
D428V8, multiclass
        clus
vv       UBC MUTATED UBC WILD-TYPE
  CLUS_1           6           151
  CLUS_2           1            62
  CLUS_3           0            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UBC MUTATED        0      0      3      0      0      1
  UBC WILD-TYPE     33     19     56     39     16     44
D428V9, multiclass
        clus
vv       UBC MUTATED UBC WILD-TYPE
  CLUS_1           0            33
  CLUS_2           0            19
  CLUS_3           3            56
  CLUS_4           0            39
  CLUS_5           0            16
  CLUS_6           1            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UBC MUTATED        1      1      2      0      0      0
  UBC WILD-TYPE     46     38     33     32     23     35
D428V10, multiclass
        clus
vv       UBC MUTATED UBC WILD-TYPE
  CLUS_1           1            46
  CLUS_2           1            38
  CLUS_3           2            33
  CLUS_4           0            32
  CLUS_5           0            23
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(429) Variable = PPL MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPL MUTATED        1     10      2      2      0
  PPL WILD-TYPE     78    116     25     41     12
D429V1, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1            78
  CLUS_2          10           116
  CLUS_3           2            25
  CLUS_4           2            41
  CLUS_5           0            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPL MUTATED        1      8      3      2
  PPL WILD-TYPE     70     68     31     61
D429V2, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           1            70
  CLUS_2           8            68
  CLUS_3           3            31
  CLUS_4           2            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPL MUTATED        3      6      2      0      3
  PPL WILD-TYPE     13     56     49     65     52
D429V3, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           3            13
  CLUS_2           6            56
  CLUS_3           2            49
  CLUS_4           0            65
  CLUS_5           3            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPL MUTATED        3      8      3      0
  PPL WILD-TYPE     95     36     47     57
D429V4, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           3            95
  CLUS_2           8            36
  CLUS_3           3            47
  CLUS_4           0            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPL MUTATED        8      0      3      5      0
  PPL WILD-TYPE     54     59     37     32     59
D429V5, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           8            54
  CLUS_2           0            59
  CLUS_3           3            37
  CLUS_4           5            32
  CLUS_5           0            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PPL MUTATED        4      0     12
  PPL WILD-TYPE    102     54     85
D429V6, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           4           102
  CLUS_2           0            54
  CLUS_3          12            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PPL MUTATED       15      1      0
  PPL WILD-TYPE    108     94     71
D429V7, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1          15           108
  CLUS_2           1            94
  CLUS_3           0            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PPL MUTATED       14      1      1
  PPL WILD-TYPE    143     62     68
D429V8, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1          14           143
  CLUS_2           1            62
  CLUS_3           1            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPL MUTATED        2      3      7      1      0      0
  PPL WILD-TYPE     31     16     52     38     16     45
D429V9, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           2            31
  CLUS_2           3            16
  CLUS_3           7            52
  CLUS_4           1            38
  CLUS_5           0            16
  CLUS_6           0            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPL MUTATED        6      0      6      0      1      0
  PPL WILD-TYPE     41     39     29     32     22     35
D429V10, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           6            41
  CLUS_2           0            39
  CLUS_3           6            29
  CLUS_4           0            32
  CLUS_5           1            22
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(430) Variable = LRP1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRP1 MUTATED        2     23      2      3      0
  LRP1 WILD-TYPE     77    103     25     40     12
D430V1, multiclass
        clus
vv       LRP1 MUTATED LRP1 WILD-TYPE
  CLUS_1            2             77
  CLUS_2           23            103
  CLUS_3            2             25
  CLUS_4            3             40
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP1 MUTATED        2     15      3      3
  LRP1 WILD-TYPE     69     61     31     60
D430V2, multiclass
        clus
vv       LRP1 MUTATED LRP1 WILD-TYPE
  CLUS_1            2             69
  CLUS_2           15             61
  CLUS_3            3             31
  CLUS_4            3             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRP1 MUTATED        1     12      6      3      6
  LRP1 WILD-TYPE     15     50     45     62     49
D430V3, multiclass
        clus
vv       LRP1 MUTATED LRP1 WILD-TYPE
  CLUS_1            1             15
  CLUS_2           12             50
  CLUS_3            6             45
  CLUS_4            3             62
  CLUS_5            6             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP1 MUTATED        3     14      8      3
  LRP1 WILD-TYPE     95     30     42     54
D430V4, multiclass
        clus
vv       LRP1 MUTATED LRP1 WILD-TYPE
  CLUS_1            3             95
  CLUS_2           14             30
  CLUS_3            8             42
  CLUS_4            3             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRP1 MUTATED       12      2      2      7      2
  LRP1 WILD-TYPE     50     57     38     30     57
D430V5, multiclass
        clus
vv       LRP1 MUTATED LRP1 WILD-TYPE
  CLUS_1           12             50
  CLUS_2            2             57
  CLUS_3            2             38
  CLUS_4            7             30
  CLUS_5            2             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LRP1 MUTATED        6      2     17
  LRP1 WILD-TYPE    100     52     80
D430V6, multiclass
        clus
vv       LRP1 MUTATED LRP1 WILD-TYPE
  CLUS_1            6            100
  CLUS_2            2             52
  CLUS_3           17             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LRP1 MUTATED       23      4      3
  LRP1 WILD-TYPE    100     91     68
D430V7, multiclass
        clus
vv       LRP1 MUTATED LRP1 WILD-TYPE
  CLUS_1           23            100
  CLUS_2            4             91
  CLUS_3            3             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LRP1 MUTATED       25      3      2
  LRP1 WILD-TYPE    132     60     67
D430V8, multiclass
        clus
vv       LRP1 MUTATED LRP1 WILD-TYPE
  CLUS_1           25            132
  CLUS_2            3             60
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRP1 MUTATED        2      3      7      6      0      2
  LRP1 WILD-TYPE     31     16     52     33     16     43
D430V9, multiclass
        clus
vv       LRP1 MUTATED LRP1 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            3             16
  CLUS_3            7             52
  CLUS_4            6             33
  CLUS_5            0             16
  CLUS_6            2             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRP1 MUTATED        8      1      4      1      5      1
  LRP1 WILD-TYPE     39     38     31     31     18     34
D430V10, multiclass
        clus
vv       LRP1 MUTATED LRP1 WILD-TYPE
  CLUS_1            8             39
  CLUS_2            1             38
  CLUS_3            4             31
  CLUS_4            1             31
  CLUS_5            5             18
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(431) Variable = CTNNB1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNNB1 MUTATED        2      9      5      2      0
  CTNNB1 WILD-TYPE     77    117     22     41     12
D431V1, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              2               77
  CLUS_2              9              117
  CLUS_3              5               22
  CLUS_4              2               41
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNB1 MUTATED        2      7      4      3
  CTNNB1 WILD-TYPE     69     69     30     60
D431V2, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              7               69
  CLUS_3              4               30
  CLUS_4              3               60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNNB1 MUTATED        3      5      1      3      4
  CTNNB1 WILD-TYPE     13     57     50     62     51
D431V3, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              3               13
  CLUS_2              5               57
  CLUS_3              1               50
  CLUS_4              3               62
  CLUS_5              4               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNB1 MUTATED        3      7      3      3
  CTNNB1 WILD-TYPE     95     37     47     54
D431V4, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              3               95
  CLUS_2              7               37
  CLUS_3              3               47
  CLUS_4              3               54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNNB1 MUTATED       10      0      2      2      2
  CTNNB1 WILD-TYPE     52     59     38     35     57
D431V5, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1             10               52
  CLUS_2              0               59
  CLUS_3              2               38
  CLUS_4              2               35
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED        8      1      7
  CTNNB1 WILD-TYPE     98     53     90
D431V6, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              8               98
  CLUS_2              1               53
  CLUS_3              7               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED       12      2      4
  CTNNB1 WILD-TYPE    111     93     67
D431V7, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1             12              111
  CLUS_2              2               93
  CLUS_3              4               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED       13      2      3
  CTNNB1 WILD-TYPE    144     61     66
D431V8, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1             13              144
  CLUS_2              2               61
  CLUS_3              3               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTNNB1 MUTATED        3      0      7      2      0      1
  CTNNB1 WILD-TYPE     30     19     52     37     16     44
D431V9, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              0               19
  CLUS_3              7               52
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTNNB1 MUTATED        3      1      6      2      0      1
  CTNNB1 WILD-TYPE     44     38     29     30     23     34
D431V10, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              1               38
  CLUS_3              6               29
  CLUS_4              2               30
  CLUS_5              0               23
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(432) Variable = KBTBD10 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KBTBD10 MUTATED        0      3      0      0      2
  KBTBD10 WILD-TYPE     79    123     27     43     10
D432V1, multiclass
        clus
vv       KBTBD10 MUTATED KBTBD10 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               3               123
  CLUS_3               0                27
  CLUS_4               0                43
  CLUS_5               2                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KBTBD10 MUTATED        0      4      0      0
  KBTBD10 WILD-TYPE     71     72     34     63
D432V2, multiclass
        clus
vv       KBTBD10 MUTATED KBTBD10 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               4                72
  CLUS_3               0                34
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KBTBD10 MUTATED        0      3      0      0      0
  KBTBD10 WILD-TYPE     16     59     51     65     55
D432V3, multiclass
        clus
vv       KBTBD10 MUTATED KBTBD10 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               3                59
  CLUS_3               0                51
  CLUS_4               0                65
  CLUS_5               0                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KBTBD10 MUTATED        1      1      1      0
  KBTBD10 WILD-TYPE     97     43     49     57
D432V4, multiclass
        clus
vv       KBTBD10 MUTATED KBTBD10 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               1                43
  CLUS_3               1                49
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KBTBD10 MUTATED        2      0      2      1      0
  KBTBD10 WILD-TYPE     60     59     38     36     59
D432V5, multiclass
        clus
vv       KBTBD10 MUTATED KBTBD10 WILD-TYPE
  CLUS_1               2                60
  CLUS_2               0                59
  CLUS_3               2                38
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  KBTBD10 MUTATED        0      0      5
  KBTBD10 WILD-TYPE    106     54     92
D432V6, multiclass
        clus
vv       KBTBD10 MUTATED KBTBD10 WILD-TYPE
  CLUS_1               0               106
  CLUS_2               0                54
  CLUS_3               5                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  KBTBD10 MUTATED        4      0      1
  KBTBD10 WILD-TYPE    119     95     70
D432V7, multiclass
        clus
vv       KBTBD10 MUTATED KBTBD10 WILD-TYPE
  CLUS_1               4               119
  CLUS_2               0                95
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  KBTBD10 MUTATED        5      0      0
  KBTBD10 WILD-TYPE    152     63     69
D432V8, multiclass
        clus
vv       KBTBD10 MUTATED KBTBD10 WILD-TYPE
  CLUS_1               5               152
  CLUS_2               0                63
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KBTBD10 MUTATED        1      0      1      1      0      0
  KBTBD10 WILD-TYPE     32     19     58     38     16     45
D432V9, multiclass
        clus
vv       KBTBD10 MUTATED KBTBD10 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                19
  CLUS_3               1                58
  CLUS_4               1                38
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KBTBD10 MUTATED        2      0      1      0      0      0
  KBTBD10 WILD-TYPE     45     39     34     32     23     35
D432V10, multiclass
        clus
vv       KBTBD10 MUTATED KBTBD10 WILD-TYPE
  CLUS_1               2                45
  CLUS_2               0                39
  CLUS_3               1                34
  CLUS_4               0                32
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(433) Variable = PUS7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PUS7 MUTATED        0      9      1      0      0
  PUS7 WILD-TYPE     79    117     26     43     12
D433V1, multiclass
        clus
vv       PUS7 MUTATED PUS7 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            9            117
  CLUS_3            1             26
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PUS7 MUTATED        0      4      2      2
  PUS7 WILD-TYPE     71     72     32     61
D433V2, multiclass
        clus
vv       PUS7 MUTATED PUS7 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            4             72
  CLUS_3            2             32
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PUS7 MUTATED        1      1      2      0      5
  PUS7 WILD-TYPE     15     61     49     65     50
D433V3, multiclass
        clus
vv       PUS7 MUTATED PUS7 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            1             61
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            5             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PUS7 MUTATED        3      5      1      0
  PUS7 WILD-TYPE     95     39     49     57
D433V4, multiclass
        clus
vv       PUS7 MUTATED PUS7 WILD-TYPE
  CLUS_1            3             95
  CLUS_2            5             39
  CLUS_3            1             49
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PUS7 MUTATED        4      0      0      3      0
  PUS7 WILD-TYPE     58     59     40     34     59
D433V5, multiclass
        clus
vv       PUS7 MUTATED PUS7 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            3             34
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PUS7 MUTATED        1      0      6
  PUS7 WILD-TYPE    105     54     91
D433V6, multiclass
        clus
vv       PUS7 MUTATED PUS7 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PUS7 MUTATED        9      1      0
  PUS7 WILD-TYPE    114     94     71
D433V7, multiclass
        clus
vv       PUS7 MUTATED PUS7 WILD-TYPE
  CLUS_1            9            114
  CLUS_2            1             94
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PUS7 MUTATED        9      1      0
  PUS7 WILD-TYPE    148     62     69
D433V8, multiclass
        clus
vv       PUS7 MUTATED PUS7 WILD-TYPE
  CLUS_1            9            148
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PUS7 MUTATED        2      1      2      0      0      1
  PUS7 WILD-TYPE     31     18     57     39     16     44
D433V9, multiclass
        clus
vv       PUS7 MUTATED PUS7 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             18
  CLUS_3            2             57
  CLUS_4            0             39
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PUS7 MUTATED        3      1      1      1      0      0
  PUS7 WILD-TYPE     44     38     34     31     23     35
D433V10, multiclass
        clus
vv       PUS7 MUTATED PUS7 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            1             38
  CLUS_3            1             34
  CLUS_4            1             31
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(434) Variable = HEPACAM2 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HEPACAM2 MUTATED        0      6      2      0      0
  HEPACAM2 WILD-TYPE     79    120     25     43     12
D434V1, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                0                 79
  CLUS_2                6                120
  CLUS_3                2                 25
  CLUS_4                0                 43
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEPACAM2 MUTATED        1      3      0      1
  HEPACAM2 WILD-TYPE     70     73     34     62
D434V2, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                1                 70
  CLUS_2                3                 73
  CLUS_3                0                 34
  CLUS_4                1                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HEPACAM2 MUTATED        0      3      2      1      2
  HEPACAM2 WILD-TYPE     16     59     49     64     53
D434V3, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                3                 59
  CLUS_3                2                 49
  CLUS_4                1                 64
  CLUS_5                2                 53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEPACAM2 MUTATED        2      3      2      1
  HEPACAM2 WILD-TYPE     96     41     48     56
D434V4, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                2                 96
  CLUS_2                3                 41
  CLUS_3                2                 48
  CLUS_4                1                 56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HEPACAM2 MUTATED        3      1      0      3      0
  HEPACAM2 WILD-TYPE     59     58     40     34     59
D434V5, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                3                 59
  CLUS_2                1                 58
  CLUS_3                0                 40
  CLUS_4                3                 34
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HEPACAM2 MUTATED        1      2      4
  HEPACAM2 WILD-TYPE    105     52     93
D434V6, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                1                105
  CLUS_2                2                 52
  CLUS_3                4                 93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HEPACAM2 MUTATED        5      3      0
  HEPACAM2 WILD-TYPE    118     92     71
D434V7, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                5                118
  CLUS_2                3                 92
  CLUS_3                0                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HEPACAM2 MUTATED        7      1      0
  HEPACAM2 WILD-TYPE    150     62     69
D434V8, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                7                150
  CLUS_2                1                 62
  CLUS_3                0                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HEPACAM2 MUTATED        1      1      1      1      0      1
  HEPACAM2 WILD-TYPE     32     18     58     38     16     44
D434V9, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                1                 18
  CLUS_3                1                 58
  CLUS_4                1                 38
  CLUS_5                0                 16
  CLUS_6                1                 44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HEPACAM2 MUTATED        3      1      0      0      1      0
  HEPACAM2 WILD-TYPE     44     38     35     32     22     35
D434V10, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                3                 44
  CLUS_2                1                 38
  CLUS_3                0                 35
  CLUS_4                0                 32
  CLUS_5                1                 22
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(435) Variable = PADI3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PADI3 MUTATED        0      8      1      2      1
  PADI3 WILD-TYPE     79    118     26     41     11
D435V1, multiclass
        clus
vv       PADI3 MUTATED PADI3 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             8             118
  CLUS_3             1              26
  CLUS_4             2              41
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PADI3 MUTATED        0      7      2      0
  PADI3 WILD-TYPE     71     69     32     63
D435V2, multiclass
        clus
vv       PADI3 MUTATED PADI3 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             7              69
  CLUS_3             2              32
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PADI3 MUTATED        1      5      5      0      1
  PADI3 WILD-TYPE     15     57     46     65     54
D435V3, multiclass
        clus
vv       PADI3 MUTATED PADI3 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             5              57
  CLUS_3             5              46
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PADI3 MUTATED        4      7      1      0
  PADI3 WILD-TYPE     94     37     49     57
D435V4, multiclass
        clus
vv       PADI3 MUTATED PADI3 WILD-TYPE
  CLUS_1             4              94
  CLUS_2             7              37
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PADI3 MUTATED        6      1      2      2      0
  PADI3 WILD-TYPE     56     58     38     35     59
D435V5, multiclass
        clus
vv       PADI3 MUTATED PADI3 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             1              58
  CLUS_3             2              38
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PADI3 MUTATED        1      1      9
  PADI3 WILD-TYPE    105     53     88
D435V6, multiclass
        clus
vv       PADI3 MUTATED PADI3 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             1              53
  CLUS_3             9              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PADI3 MUTATED       11      1      0
  PADI3 WILD-TYPE    112     94     71
D435V7, multiclass
        clus
vv       PADI3 MUTATED PADI3 WILD-TYPE
  CLUS_1            11             112
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PADI3 MUTATED       10      1      1
  PADI3 WILD-TYPE    147     62     68
D435V8, multiclass
        clus
vv       PADI3 MUTATED PADI3 WILD-TYPE
  CLUS_1            10             147
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PADI3 MUTATED        0      1      4      1      0      1
  PADI3 WILD-TYPE     33     18     55     38     16     44
D435V9, multiclass
        clus
vv       PADI3 MUTATED PADI3 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              18
  CLUS_3             4              55
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PADI3 MUTATED        2      1      3      1      0      0
  PADI3 WILD-TYPE     45     38     32     31     23     35
D435V10, multiclass
        clus
vv       PADI3 MUTATED PADI3 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(436) Variable = EVL MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EVL MUTATED        0      6      0      0      1
  EVL WILD-TYPE     79    120     27     43     11
D436V1, multiclass
        clus
vv       EVL MUTATED EVL WILD-TYPE
  CLUS_1           0            79
  CLUS_2           6           120
  CLUS_3           0            27
  CLUS_4           0            43
  CLUS_5           1            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EVL MUTATED        0      3      0      1
  EVL WILD-TYPE     71     73     34     62
D436V2, multiclass
        clus
vv       EVL MUTATED EVL WILD-TYPE
  CLUS_1           0            71
  CLUS_2           3            73
  CLUS_3           0            34
  CLUS_4           1            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EVL MUTATED        0      4      0      0      3
  EVL WILD-TYPE     16     58     51     65     52
D436V3, multiclass
        clus
vv       EVL MUTATED EVL WILD-TYPE
  CLUS_1           0            16
  CLUS_2           4            58
  CLUS_3           0            51
  CLUS_4           0            65
  CLUS_5           3            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EVL MUTATED        1      2      3      1
  EVL WILD-TYPE     97     42     47     56
D436V4, multiclass
        clus
vv       EVL MUTATED EVL WILD-TYPE
  CLUS_1           1            97
  CLUS_2           2            42
  CLUS_3           3            47
  CLUS_4           1            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EVL MUTATED        3      1      0      2      0
  EVL WILD-TYPE     59     58     40     35     59
D436V5, multiclass
        clus
vv       EVL MUTATED EVL WILD-TYPE
  CLUS_1           3            59
  CLUS_2           1            58
  CLUS_3           0            40
  CLUS_4           2            35
  CLUS_5           0            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  EVL MUTATED        2      2      2
  EVL WILD-TYPE    104     52     95
D436V6, multiclass
        clus
vv       EVL MUTATED EVL WILD-TYPE
  CLUS_1           2           104
  CLUS_2           2            52
  CLUS_3           2            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  EVL MUTATED        4      2      1
  EVL WILD-TYPE    119     93     70
D436V7, multiclass
        clus
vv       EVL MUTATED EVL WILD-TYPE
  CLUS_1           4           119
  CLUS_2           2            93
  CLUS_3           1            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  EVL MUTATED        6      1      0
  EVL WILD-TYPE    151     62     69
D436V8, multiclass
        clus
vv       EVL MUTATED EVL WILD-TYPE
  CLUS_1           6           151
  CLUS_2           1            62
  CLUS_3           0            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EVL MUTATED        0      0      0      2      0      1
  EVL WILD-TYPE     33     19     59     37     16     44
D436V9, multiclass
        clus
vv       EVL MUTATED EVL WILD-TYPE
  CLUS_1           0            33
  CLUS_2           0            19
  CLUS_3           0            59
  CLUS_4           2            37
  CLUS_5           0            16
  CLUS_6           1            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EVL MUTATED        1      1      0      0      1      0
  EVL WILD-TYPE     46     38     35     32     22     35
D436V10, multiclass
        clus
vv       EVL MUTATED EVL WILD-TYPE
  CLUS_1           1            46
  CLUS_2           1            38
  CLUS_3           0            35
  CLUS_4           0            32
  CLUS_5           1            22
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(437) Variable = JHDM1D MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JHDM1D MUTATED        1      6      2      0      1
  JHDM1D WILD-TYPE     78    120     25     43     11
D437V1, multiclass
        clus
vv       JHDM1D MUTATED JHDM1D WILD-TYPE
  CLUS_1              1               78
  CLUS_2              6              120
  CLUS_3              2               25
  CLUS_4              0               43
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JHDM1D MUTATED        1      7      0      0
  JHDM1D WILD-TYPE     70     69     34     63
D437V2, multiclass
        clus
vv       JHDM1D MUTATED JHDM1D WILD-TYPE
  CLUS_1              1               70
  CLUS_2              7               69
  CLUS_3              0               34
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JHDM1D MUTATED        1      2      3      0      3
  JHDM1D WILD-TYPE     15     60     48     65     52
D437V3, multiclass
        clus
vv       JHDM1D MUTATED JHDM1D WILD-TYPE
  CLUS_1              1               15
  CLUS_2              2               60
  CLUS_3              3               48
  CLUS_4              0               65
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JHDM1D MUTATED        3      4      1      1
  JHDM1D WILD-TYPE     95     40     49     56
D437V4, multiclass
        clus
vv       JHDM1D MUTATED JHDM1D WILD-TYPE
  CLUS_1              3               95
  CLUS_2              4               40
  CLUS_3              1               49
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JHDM1D MUTATED        5      1      1      2      1
  JHDM1D WILD-TYPE     57     58     39     35     58
D437V5, multiclass
        clus
vv       JHDM1D MUTATED JHDM1D WILD-TYPE
  CLUS_1              5               57
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              2               35
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  JHDM1D MUTATED        1      1      8
  JHDM1D WILD-TYPE    105     53     89
D437V6, multiclass
        clus
vv       JHDM1D MUTATED JHDM1D WILD-TYPE
  CLUS_1              1              105
  CLUS_2              1               53
  CLUS_3              8               89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  JHDM1D MUTATED        8      0      2
  JHDM1D WILD-TYPE    115     95     69
D437V7, multiclass
        clus
vv       JHDM1D MUTATED JHDM1D WILD-TYPE
  CLUS_1              8              115
  CLUS_2              0               95
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  JHDM1D MUTATED        8      0      2
  JHDM1D WILD-TYPE    149     63     67
D437V8, multiclass
        clus
vv       JHDM1D MUTATED JHDM1D WILD-TYPE
  CLUS_1              8              149
  CLUS_2              0               63
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  JHDM1D MUTATED        2      2      3      1      0      0
  JHDM1D WILD-TYPE     31     17     56     38     16     45
D437V9, multiclass
        clus
vv       JHDM1D MUTATED JHDM1D WILD-TYPE
  CLUS_1              2               31
  CLUS_2              2               17
  CLUS_3              3               56
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  JHDM1D MUTATED        3      0      2      2      0      1
  JHDM1D WILD-TYPE     44     39     33     30     23     34
D437V10, multiclass
        clus
vv       JHDM1D MUTATED JHDM1D WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              2               30
  CLUS_5              0               23
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(438) Variable = CNKSR2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNKSR2 MUTATED        3      7      1      1      0
  CNKSR2 WILD-TYPE     76    119     26     42     12
D438V1, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              3               76
  CLUS_2              7              119
  CLUS_3              1               26
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNKSR2 MUTATED        2      3      1      2
  CNKSR2 WILD-TYPE     69     73     33     61
D438V2, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              3               73
  CLUS_3              1               33
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNKSR2 MUTATED        4      3      3      0      2
  CNKSR2 WILD-TYPE     12     59     48     65     53
D438V3, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              4               12
  CLUS_2              3               59
  CLUS_3              3               48
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNKSR2 MUTATED        6      3      3      0
  CNKSR2 WILD-TYPE     92     41     47     57
D438V4, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              6               92
  CLUS_2              3               41
  CLUS_3              3               47
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNKSR2 MUTATED        3      3      0      3      2
  CNKSR2 WILD-TYPE     59     56     40     34     57
D438V5, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              3               56
  CLUS_3              0               40
  CLUS_4              3               34
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CNKSR2 MUTATED        5      0      6
  CNKSR2 WILD-TYPE    101     54     91
D438V6, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              5              101
  CLUS_2              0               54
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CNKSR2 MUTATED       10      1      1
  CNKSR2 WILD-TYPE    113     94     70
D438V7, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1             10              113
  CLUS_2              1               94
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CNKSR2 MUTATED        9      0      3
  CNKSR2 WILD-TYPE    148     63     66
D438V8, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              9              148
  CLUS_2              0               63
  CLUS_3              3               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNKSR2 MUTATED        1      1      3      1      0      1
  CNKSR2 WILD-TYPE     32     18     56     38     16     44
D438V9, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              3               56
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNKSR2 MUTATED        2      1      2      1      1      0
  CNKSR2 WILD-TYPE     45     38     33     31     22     35
D438V10, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              1               38
  CLUS_3              2               33
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(439) Variable = UBXN6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBXN6 MUTATED        0     10      1      0      1
  UBXN6 WILD-TYPE     79    116     26     43     11
D439V1, multiclass
        clus
vv       UBXN6 MUTATED UBXN6 WILD-TYPE
  CLUS_1             0              79
  CLUS_2            10             116
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBXN6 MUTATED        0     10      1      0
  UBXN6 WILD-TYPE     71     66     33     63
D439V2, multiclass
        clus
vv       UBXN6 MUTATED UBXN6 WILD-TYPE
  CLUS_1             0              71
  CLUS_2            10              66
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBXN6 MUTATED        0      6      2      0      1
  UBXN6 WILD-TYPE     16     56     49     65     54
D439V3, multiclass
        clus
vv       UBXN6 MUTATED UBXN6 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             6              56
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBXN6 MUTATED        0      3      5      1
  UBXN6 WILD-TYPE     98     41     45     56
D439V4, multiclass
        clus
vv       UBXN6 MUTATED UBXN6 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             3              41
  CLUS_3             5              45
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBXN6 MUTATED        6      1      1      3      0
  UBXN6 WILD-TYPE     56     58     39     34     59
D439V5, multiclass
        clus
vv       UBXN6 MUTATED UBXN6 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBXN6 MUTATED        2      1      8
  UBXN6 WILD-TYPE    104     53     89
D439V6, multiclass
        clus
vv       UBXN6 MUTATED UBXN6 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              53
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBXN6 MUTATED       10      0      2
  UBXN6 WILD-TYPE    113     95     69
D439V7, multiclass
        clus
vv       UBXN6 MUTATED UBXN6 WILD-TYPE
  CLUS_1            10             113
  CLUS_2             0              95
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBXN6 MUTATED       11      0      1
  UBXN6 WILD-TYPE    146     63     68
D439V8, multiclass
        clus
vv       UBXN6 MUTATED UBXN6 WILD-TYPE
  CLUS_1            11             146
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UBXN6 MUTATED        0      5      3      1      0      0
  UBXN6 WILD-TYPE     33     14     56     38     16     45
D439V9, multiclass
        clus
vv       UBXN6 MUTATED UBXN6 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             5              14
  CLUS_3             3              56
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UBXN6 MUTATED        5      0      3      1      0      0
  UBXN6 WILD-TYPE     42     39     32     31     23     35
D439V10, multiclass
        clus
vv       UBXN6 MUTATED UBXN6 WILD-TYPE
  CLUS_1             5              42
  CLUS_2             0              39
  CLUS_3             3              32
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(440) Variable = GPATCH2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPATCH2 MUTATED        0      6      1      0      0
  GPATCH2 WILD-TYPE     79    120     26     43     12
D440V1, multiclass
        clus
vv       GPATCH2 MUTATED GPATCH2 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               6               120
  CLUS_3               1                26
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPATCH2 MUTATED        0      2      2      1
  GPATCH2 WILD-TYPE     71     74     32     62
D440V2, multiclass
        clus
vv       GPATCH2 MUTATED GPATCH2 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               2                74
  CLUS_3               2                32
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPATCH2 MUTATED        1      2      4      0      0
  GPATCH2 WILD-TYPE     15     60     47     65     55
D440V3, multiclass
        clus
vv       GPATCH2 MUTATED GPATCH2 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               2                60
  CLUS_3               4                47
  CLUS_4               0                65
  CLUS_5               0                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPATCH2 MUTATED        1      5      1      0
  GPATCH2 WILD-TYPE     97     39     49     57
D440V4, multiclass
        clus
vv       GPATCH2 MUTATED GPATCH2 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               5                39
  CLUS_3               1                49
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPATCH2 MUTATED        4      0      1      1      0
  GPATCH2 WILD-TYPE     58     59     39     36     59
D440V5, multiclass
        clus
vv       GPATCH2 MUTATED GPATCH2 WILD-TYPE
  CLUS_1               4                58
  CLUS_2               0                59
  CLUS_3               1                39
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GPATCH2 MUTATED        1      0      5
  GPATCH2 WILD-TYPE    105     54     92
D440V6, multiclass
        clus
vv       GPATCH2 MUTATED GPATCH2 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               0                54
  CLUS_3               5                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GPATCH2 MUTATED        6      1      0
  GPATCH2 WILD-TYPE    117     94     71
D440V7, multiclass
        clus
vv       GPATCH2 MUTATED GPATCH2 WILD-TYPE
  CLUS_1               6               117
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GPATCH2 MUTATED        6      1      0
  GPATCH2 WILD-TYPE    151     62     69
D440V8, multiclass
        clus
vv       GPATCH2 MUTATED GPATCH2 WILD-TYPE
  CLUS_1               6               151
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPATCH2 MUTATED        0      0      4      0      0      1
  GPATCH2 WILD-TYPE     33     19     55     39     16     44
D440V9, multiclass
        clus
vv       GPATCH2 MUTATED GPATCH2 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               0                19
  CLUS_3               4                55
  CLUS_4               0                39
  CLUS_5               0                16
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPATCH2 MUTATED        1      1      3      0      0      0
  GPATCH2 WILD-TYPE     46     38     32     32     23     35
D440V10, multiclass
        clus
vv       GPATCH2 MUTATED GPATCH2 WILD-TYPE
  CLUS_1               1                46
  CLUS_2               1                38
  CLUS_3               3                32
  CLUS_4               0                32
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(441) Variable = ZFP36L2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36L2 MUTATED        1      4      1      1      1
  ZFP36L2 WILD-TYPE     78    122     26     42     11
D441V1, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               1                78
  CLUS_2               4               122
  CLUS_3               1                26
  CLUS_4               1                42
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        1      7      0      0
  ZFP36L2 WILD-TYPE     70     69     34     63
D441V2, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               7                69
  CLUS_3               0                34
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36L2 MUTATED        0      2      0      1      2
  ZFP36L2 WILD-TYPE     16     60     51     64     53
D441V3, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               2                60
  CLUS_3               0                51
  CLUS_4               1                64
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        0      4      0      1
  ZFP36L2 WILD-TYPE     98     40     50     56
D441V4, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               0                98
  CLUS_2               4                40
  CLUS_3               0                50
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36L2 MUTATED        2      1      1      3      1
  ZFP36L2 WILD-TYPE     60     58     39     34     58
D441V5, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               2                60
  CLUS_2               1                58
  CLUS_3               1                39
  CLUS_4               3                34
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFP36L2 MUTATED        1      1      6
  ZFP36L2 WILD-TYPE    105     53     91
D441V6, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               1                53
  CLUS_3               6                91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFP36L2 MUTATED        6      1      1
  ZFP36L2 WILD-TYPE    117     94     70
D441V7, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               6               117
  CLUS_2               1                94
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFP36L2 MUTATED        7      1      0
  ZFP36L2 WILD-TYPE    150     62     69
D441V8, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               7               150
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZFP36L2 MUTATED        1      2      0      3      0      0
  ZFP36L2 WILD-TYPE     32     17     59     36     16     45
D441V9, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               2                17
  CLUS_3               0                59
  CLUS_4               3                36
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZFP36L2 MUTATED        5      0      0      1      0      0
  ZFP36L2 WILD-TYPE     42     39     35     31     23     35
D441V10, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               5                42
  CLUS_2               0                39
  CLUS_3               0                35
  CLUS_4               1                31
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(442) Variable = PRICKLE4 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRICKLE4 MUTATED        0      4      1      0      1
  PRICKLE4 WILD-TYPE     79    122     26     43     11
D442V1, multiclass
        clus
vv       PRICKLE4 MUTATED PRICKLE4 WILD-TYPE
  CLUS_1                0                 79
  CLUS_2                4                122
  CLUS_3                1                 26
  CLUS_4                0                 43
  CLUS_5                1                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRICKLE4 MUTATED        1      1      0      1
  PRICKLE4 WILD-TYPE     70     75     34     62
D442V2, multiclass
        clus
vv       PRICKLE4 MUTATED PRICKLE4 WILD-TYPE
  CLUS_1                1                 70
  CLUS_2                1                 75
  CLUS_3                0                 34
  CLUS_4                1                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRICKLE4 MUTATED        1      2      1      0      2
  PRICKLE4 WILD-TYPE     15     60     50     65     53
D442V3, multiclass
        clus
vv       PRICKLE4 MUTATED PRICKLE4 WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                2                 60
  CLUS_3                1                 50
  CLUS_4                0                 65
  CLUS_5                2                 53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRICKLE4 MUTATED        2      2      2      0
  PRICKLE4 WILD-TYPE     96     42     48     57
D442V4, multiclass
        clus
vv       PRICKLE4 MUTATED PRICKLE4 WILD-TYPE
  CLUS_1                2                 96
  CLUS_2                2                 42
  CLUS_3                2                 48
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRICKLE4 MUTATED        2      1      3      0      0
  PRICKLE4 WILD-TYPE     60     58     37     37     59
D442V5, multiclass
        clus
vv       PRICKLE4 MUTATED PRICKLE4 WILD-TYPE
  CLUS_1                2                 60
  CLUS_2                1                 58
  CLUS_3                3                 37
  CLUS_4                0                 37
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PRICKLE4 MUTATED        3      0      3
  PRICKLE4 WILD-TYPE    103     54     94
D442V6, multiclass
        clus
vv       PRICKLE4 MUTATED PRICKLE4 WILD-TYPE
  CLUS_1                3                103
  CLUS_2                0                 54
  CLUS_3                3                 94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PRICKLE4 MUTATED        6      0      0
  PRICKLE4 WILD-TYPE    117     95     71
D442V7, multiclass
        clus
vv       PRICKLE4 MUTATED PRICKLE4 WILD-TYPE
  CLUS_1                6                117
  CLUS_2                0                 95
  CLUS_3                0                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PRICKLE4 MUTATED        5      1      0
  PRICKLE4 WILD-TYPE    152     62     69
D442V8, multiclass
        clus
vv       PRICKLE4 MUTATED PRICKLE4 WILD-TYPE
  CLUS_1                5                152
  CLUS_2                1                 62
  CLUS_3                0                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRICKLE4 MUTATED        0      1      2      0      0      0
  PRICKLE4 WILD-TYPE     33     18     57     39     16     45
D442V9, multiclass
        clus
vv       PRICKLE4 MUTATED PRICKLE4 WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                1                 18
  CLUS_3                2                 57
  CLUS_4                0                 39
  CLUS_5                0                 16
  CLUS_6                0                 45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRICKLE4 MUTATED        1      0      2      0      0      0
  PRICKLE4 WILD-TYPE     46     39     33     32     23     35
D442V10, multiclass
        clus
vv       PRICKLE4 MUTATED PRICKLE4 WILD-TYPE
  CLUS_1                1                 46
  CLUS_2                0                 39
  CLUS_3                2                 33
  CLUS_4                0                 32
  CLUS_5                0                 23
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(443) Variable = LRFN3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRFN3 MUTATED        2     12      2      1      1
  LRFN3 WILD-TYPE     77    114     25     42     11
D443V1, multiclass
        clus
vv       LRFN3 MUTATED LRFN3 WILD-TYPE
  CLUS_1             2              77
  CLUS_2            12             114
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRFN3 MUTATED        1     10      2      2
  LRFN3 WILD-TYPE     70     66     32     61
D443V2, multiclass
        clus
vv       LRFN3 MUTATED LRFN3 WILD-TYPE
  CLUS_1             1              70
  CLUS_2            10              66
  CLUS_3             2              32
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRFN3 MUTATED        1      7      1      1      5
  LRFN3 WILD-TYPE     15     55     50     64     50
D443V3, multiclass
        clus
vv       LRFN3 MUTATED LRFN3 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             7              55
  CLUS_3             1              50
  CLUS_4             1              64
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRFN3 MUTATED        4      7      4      0
  LRFN3 WILD-TYPE     94     37     46     57
D443V4, multiclass
        clus
vv       LRFN3 MUTATED LRFN3 WILD-TYPE
  CLUS_1             4              94
  CLUS_2             7              37
  CLUS_3             4              46
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRFN3 MUTATED        8      2      4      2      1
  LRFN3 WILD-TYPE     54     57     36     35     58
D443V5, multiclass
        clus
vv       LRFN3 MUTATED LRFN3 WILD-TYPE
  CLUS_1             8              54
  CLUS_2             2              57
  CLUS_3             4              36
  CLUS_4             2              35
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRFN3 MUTATED        5      1     11
  LRFN3 WILD-TYPE    101     53     86
D443V6, multiclass
        clus
vv       LRFN3 MUTATED LRFN3 WILD-TYPE
  CLUS_1             5             101
  CLUS_2             1              53
  CLUS_3            11              86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRFN3 MUTATED       10      2      6
  LRFN3 WILD-TYPE    113     93     65
D443V7, multiclass
        clus
vv       LRFN3 MUTATED LRFN3 WILD-TYPE
  CLUS_1            10             113
  CLUS_2             2              93
  CLUS_3             6              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRFN3 MUTATED       14      1      3
  LRFN3 WILD-TYPE    143     62     66
D443V8, multiclass
        clus
vv       LRFN3 MUTATED LRFN3 WILD-TYPE
  CLUS_1            14             143
  CLUS_2             1              62
  CLUS_3             3              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRFN3 MUTATED        1      2      3      5      0      1
  LRFN3 WILD-TYPE     32     17     56     34     16     44
D443V9, multiclass
        clus
vv       LRFN3 MUTATED LRFN3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              17
  CLUS_3             3              56
  CLUS_4             5              34
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRFN3 MUTATED        7      1      2      0      0      2
  LRFN3 WILD-TYPE     40     38     33     32     23     33
D443V10, multiclass
        clus
vv       LRFN3 MUTATED LRFN3 WILD-TYPE
  CLUS_1             7              40
  CLUS_2             1              38
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             2              33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(444) Variable = C7ORF49 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C7ORF49 MUTATED        0      5      0      1      1
  C7ORF49 WILD-TYPE     79    121     27     42     11
D444V1, multiclass
        clus
vv       C7ORF49 MUTATED C7ORF49 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               5               121
  CLUS_3               0                27
  CLUS_4               1                42
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF49 MUTATED        0      6      1      0
  C7ORF49 WILD-TYPE     71     70     33     63
D444V2, multiclass
        clus
vv       C7ORF49 MUTATED C7ORF49 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               6                70
  CLUS_3               1                33
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C7ORF49 MUTATED        0      1      3      0      0
  C7ORF49 WILD-TYPE     16     61     48     65     55
D444V3, multiclass
        clus
vv       C7ORF49 MUTATED C7ORF49 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               1                61
  CLUS_3               3                48
  CLUS_4               0                65
  CLUS_5               0                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF49 MUTATED        0      2      1      1
  C7ORF49 WILD-TYPE     98     42     49     56
D444V4, multiclass
        clus
vv       C7ORF49 MUTATED C7ORF49 WILD-TYPE
  CLUS_1               0                98
  CLUS_2               2                42
  CLUS_3               1                49
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C7ORF49 MUTATED        4      1      1      1      0
  C7ORF49 WILD-TYPE     58     58     39     36     59
D444V5, multiclass
        clus
vv       C7ORF49 MUTATED C7ORF49 WILD-TYPE
  CLUS_1               4                58
  CLUS_2               1                58
  CLUS_3               1                39
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF49 MUTATED        0      1      6
  C7ORF49 WILD-TYPE    106     53     91
D444V6, multiclass
        clus
vv       C7ORF49 MUTATED C7ORF49 WILD-TYPE
  CLUS_1               0               106
  CLUS_2               1                53
  CLUS_3               6                91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF49 MUTATED        5      1      1
  C7ORF49 WILD-TYPE    118     94     70
D444V7, multiclass
        clus
vv       C7ORF49 MUTATED C7ORF49 WILD-TYPE
  CLUS_1               5               118
  CLUS_2               1                94
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF49 MUTATED        6      0      1
  C7ORF49 WILD-TYPE    151     63     68
D444V8, multiclass
        clus
vv       C7ORF49 MUTATED C7ORF49 WILD-TYPE
  CLUS_1               6               151
  CLUS_2               0                63
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C7ORF49 MUTATED        0      1      0      3      0      0
  C7ORF49 WILD-TYPE     33     18     59     36     16     45
D444V9, multiclass
        clus
vv       C7ORF49 MUTATED C7ORF49 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                18
  CLUS_3               0                59
  CLUS_4               3                36
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C7ORF49 MUTATED        1      0      0      1      2      0
  C7ORF49 WILD-TYPE     46     39     35     31     21     35
D444V10, multiclass
        clus
vv       C7ORF49 MUTATED C7ORF49 WILD-TYPE
  CLUS_1               1                46
  CLUS_2               0                39
  CLUS_3               0                35
  CLUS_4               1                31
  CLUS_5               2                21
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(445) Variable = FAM92B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM92B MUTATED        1      1      0      0      1
  FAM92B WILD-TYPE     78    125     27     43     11
D445V1, multiclass
        clus
vv       FAM92B MUTATED FAM92B WILD-TYPE
  CLUS_1              1               78
  CLUS_2              1              125
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM92B MUTATED        1      1      1      0
  FAM92B WILD-TYPE     70     75     33     63
D445V2, multiclass
        clus
vv       FAM92B MUTATED FAM92B WILD-TYPE
  CLUS_1              1               70
  CLUS_2              1               75
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM92B MUTATED        0      0      1      0      0
  FAM92B WILD-TYPE     16     62     50     65     55
D445V3, multiclass
[1] "Remove cluster labels:" "FAM92B MUTATED"        
clus
  FAM92B MUTATED FAM92B WILD-TYPE 
               1              248 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-4187       TCGA-BR-4188       TCGA-BR-4191       TCGA-BR-4201 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256       TCGA-BR-4257 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280       TCGA-BR-4292 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-4294       TCGA-BR-4357       TCGA-BR-4361       TCGA-BR-4362 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-4363       TCGA-BR-4366       TCGA-BR-4368       TCGA-BR-4369 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-4370       TCGA-BR-4371       TCGA-BR-6452       TCGA-BR-6453 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6710 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7715 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8080 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8081       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8297 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8360       TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8369       TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8483       TCGA-BR-8484       TCGA-BR-8485       TCGA-BR-8486 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8588       TCGA-BR-8589       TCGA-BR-8590       TCGA-BR-8591 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8679 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8686 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T       TCGA-BR-A44U 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J2       TCGA-BR-A4J4 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-A4PE       TCGA-BR-A4PF       TCGA-BR-A4QI       TCGA-BR-A4QL 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5804 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-8527       TCGA-CD-8528       TCGA-CD-8529       TCGA-CD-8530 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8534       TCGA-CD-8535 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-A48A       TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300       TCGA-CG-4301 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4442       TCGA-CG-4443 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4465 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4474       TCGA-CG-4475 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-4476       TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5723 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6527       TCGA-D7-6528 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8573 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8578       TCGA-D7-A4YT 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-A4Z0       TCGA-EQ-8122       TCGA-EQ-A4SO       TCGA-F1-6177 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7916 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-FP-7998       TCGA-HF-7132       TCGA-HF-7133       TCGA-HF-7136 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-HJ-7597       TCGA-HU-8602       TCGA-HU-8608       TCGA-HU-8610 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-HU-A4GF       TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GU 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H2       TCGA-HU-A4H3 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4HD       TCGA-IN-7806 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663       TCGA-IP-7968 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM92B MUTATED        1      0      0      0
  FAM92B WILD-TYPE     97     44     50     57
D445V4, multiclass
[1] "Remove cluster labels:" "FAM92B MUTATED"        
clus
  FAM92B MUTATED FAM92B WILD-TYPE 
               1              248 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-4187       TCGA-BR-4188       TCGA-BR-4191       TCGA-BR-4201 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256       TCGA-BR-4257 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280       TCGA-BR-4292 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-4294       TCGA-BR-4357       TCGA-BR-4361       TCGA-BR-4362 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-4363       TCGA-BR-4366       TCGA-BR-4368       TCGA-BR-4369 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-4370       TCGA-BR-4371       TCGA-BR-6452       TCGA-BR-6453 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6710 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7715 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8080 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8081       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8297 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8360       TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8369       TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8483       TCGA-BR-8484       TCGA-BR-8485       TCGA-BR-8486 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8588       TCGA-BR-8589       TCGA-BR-8590       TCGA-BR-8591 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8679 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8686 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T       TCGA-BR-A44U 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J2       TCGA-BR-A4J4 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-A4PE       TCGA-BR-A4PF       TCGA-BR-A4QI       TCGA-BR-A4QL 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5804 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-8527       TCGA-CD-8528       TCGA-CD-8529       TCGA-CD-8530 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8534       TCGA-CD-8535 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-A48A       TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300       TCGA-CG-4301 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4442       TCGA-CG-4443 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4465 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4474       TCGA-CG-4475 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-4476       TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5723 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6527       TCGA-D7-6528 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8573 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8578       TCGA-D7-A4YT 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-A4Z0       TCGA-EQ-8122       TCGA-EQ-A4SO       TCGA-F1-6177 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7916 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-FP-7998       TCGA-HF-7132       TCGA-HF-7133       TCGA-HF-7136 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-HJ-7597       TCGA-HU-8602       TCGA-HU-8608       TCGA-HU-8610 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-HU-A4GF       TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GU 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H2       TCGA-HU-A4H3 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4HD       TCGA-IN-7806 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663       TCGA-IP-7968 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM92B MUTATED        1      0      1      0      1
  FAM92B WILD-TYPE     61     59     39     37     58
D445V5, multiclass
        clus
vv       FAM92B MUTATED FAM92B WILD-TYPE
  CLUS_1              1               61
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              0               37
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM92B MUTATED        1      0      2
  FAM92B WILD-TYPE    105     54     95
D445V6, multiclass
        clus
vv       FAM92B MUTATED FAM92B WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               54
  CLUS_3              2               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM92B MUTATED        2      0      1
  FAM92B WILD-TYPE    121     95     70
D445V7, multiclass
        clus
vv       FAM92B MUTATED FAM92B WILD-TYPE
  CLUS_1              2              121
  CLUS_2              0               95
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM92B MUTATED        2      0      1
  FAM92B WILD-TYPE    155     63     68
D445V8, multiclass
        clus
vv       FAM92B MUTATED FAM92B WILD-TYPE
  CLUS_1              2              155
  CLUS_2              0               63
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM92B MUTATED        1      0      0      1      0      0
  FAM92B WILD-TYPE     32     19     59     38     16     45
D445V9, multiclass
[1] "Remove cluster labels:" "FAM92B MUTATED"        
clus
  FAM92B MUTATED FAM92B WILD-TYPE 
               2              209 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6453 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-7707       TCGA-BR-7715       TCGA-BR-7717       TCGA-BR-7723 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8077 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8080       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8297 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8360       TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8370 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373       TCGA-BR-8380 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8487       TCGA-BR-8588 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8677       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J6       TCGA-BR-A4J7 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI       TCGA-BR-A4QL 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5804 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-8532       TCGA-CD-8534       TCGA-CD-8535       TCGA-CD-8536 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489       TCGA-CD-A48C 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI       TCGA-CG-4437 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4449       TCGA-CG-5717       TCGA-CG-5718 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-8572       TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8576 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT       TCGA-D7-A4YU 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-A4YV       TCGA-D7-A4YY       TCGA-D7-A4Z0       TCGA-EQ-5647 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-EQ-8122       TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-F1-A448       TCGA-FP-7735       TCGA-FP-7829       TCGA-FP-7998 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-FP-8099       TCGA-FP-8209       TCGA-FP-8210       TCGA-FP-8211 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-FP-8631       TCGA-FP-A4BE       TCGA-HF-7132       TCGA-HF-7136 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-HU-8243       TCGA-HU-8602       TCGA-HU-8604       TCGA-HU-8608 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-HU-A4G3       TCGA-HU-A4G8       TCGA-HU-A4GC       TCGA-HU-A4GD 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GN       TCGA-HU-A4GQ 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-HU-A4GT       TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H2 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6       TCGA-HU-A4H8 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-IP-7968 
"FAM92B WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM92B MUTATED        0      0      0      0      1      1
  FAM92B WILD-TYPE     47     39     35     32     22     34
D445V10, multiclass
[1] "Remove cluster labels:" "FAM92B MUTATED"        
clus
  FAM92B MUTATED FAM92B WILD-TYPE 
               2              209 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6453 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-7707       TCGA-BR-7715       TCGA-BR-7717       TCGA-BR-7723 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8077 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8080       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8297 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8360       TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8370 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373       TCGA-BR-8380 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8487       TCGA-BR-8588 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8677       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J6       TCGA-BR-A4J7 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI       TCGA-BR-A4QL 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5804 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-8532       TCGA-CD-8534       TCGA-CD-8535       TCGA-CD-8536 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489       TCGA-CD-A48C 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI       TCGA-CG-4437 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4449       TCGA-CG-5717       TCGA-CG-5718 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-8572       TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8576 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT       TCGA-D7-A4YU 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-D7-A4YV       TCGA-D7-A4YY       TCGA-D7-A4Z0       TCGA-EQ-5647 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-EQ-8122       TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-F1-A448       TCGA-FP-7735       TCGA-FP-7829       TCGA-FP-7998 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-FP-8099       TCGA-FP-8209       TCGA-FP-8210       TCGA-FP-8211 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-FP-8631       TCGA-FP-A4BE       TCGA-HF-7132       TCGA-HF-7136 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-HU-8243       TCGA-HU-8602       TCGA-HU-8604       TCGA-HU-8608 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-HU-A4G3       TCGA-HU-A4G8       TCGA-HU-A4GC       TCGA-HU-A4GD 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GN       TCGA-HU-A4GQ 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-HU-A4GT       TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H2 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6       TCGA-HU-A4H8 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" "FAM92B WILD-TYPE" 
      TCGA-IP-7968 
"FAM92B WILD-TYPE" 

Clustering(446) Variable = HCRTR2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HCRTR2 MUTATED        1      6      1      0      0
  HCRTR2 WILD-TYPE     78    120     26     43     12
D446V1, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              6              120
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCRTR2 MUTATED        1      2      3      1
  HCRTR2 WILD-TYPE     70     74     31     62
D446V2, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              2               74
  CLUS_3              3               31
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HCRTR2 MUTATED        1      0      2      1      3
  HCRTR2 WILD-TYPE     15     62     49     64     52
D446V3, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              0               62
  CLUS_3              2               49
  CLUS_4              1               64
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCRTR2 MUTATED        2      3      0      2
  HCRTR2 WILD-TYPE     96     41     50     55
D446V4, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              3               41
  CLUS_3              0               50
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HCRTR2 MUTATED        5      1      1      1      1
  HCRTR2 WILD-TYPE     57     58     39     36     58
D446V5, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              5               57
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              1               36
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HCRTR2 MUTATED        4      1      4
  HCRTR2 WILD-TYPE    102     53     93
D446V6, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              4              102
  CLUS_2              1               53
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HCRTR2 MUTATED        6      2      1
  HCRTR2 WILD-TYPE    117     93     70
D446V7, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              6              117
  CLUS_2              2               93
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HCRTR2 MUTATED        7      1      1
  HCRTR2 WILD-TYPE    150     62     68
D446V8, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              7              150
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HCRTR2 MUTATED        1      2      2      1      0      0
  HCRTR2 WILD-TYPE     32     17     57     38     16     45
D446V9, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               17
  CLUS_3              2               57
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HCRTR2 MUTATED        3      0      1      0      2      0
  HCRTR2 WILD-TYPE     44     39     34     32     21     35
D446V10, multiclass
        clus
vv       HCRTR2 MUTATED HCRTR2 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              0               32
  CLUS_5              2               21
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(447) Variable = TAS2R10 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAS2R10 MUTATED        0      2      0      1      0
  TAS2R10 WILD-TYPE     79    124     27     42     12
D447V1, multiclass
        clus
vv       TAS2R10 MUTATED TAS2R10 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               2               124
  CLUS_3               0                27
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAS2R10 MUTATED        0      3      0      0
  TAS2R10 WILD-TYPE     71     73     34     63
D447V2, multiclass
        clus
vv       TAS2R10 MUTATED TAS2R10 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               3                73
  CLUS_3               0                34
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAS2R10 MUTATED        0      0      2      0      0
  TAS2R10 WILD-TYPE     16     62     49     65     55
D447V3, multiclass
[1] "Remove cluster labels:" "TAS2R10 MUTATED"       
clus
  TAS2R10 MUTATED TAS2R10 WILD-TYPE 
                2               247 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-4183        TCGA-BR-4184 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-4187        TCGA-BR-4188        TCGA-BR-4191        TCGA-BR-4201 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-4253        TCGA-BR-4255        TCGA-BR-4256        TCGA-BR-4257 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-4267        TCGA-BR-4279        TCGA-BR-4280        TCGA-BR-4292 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-4294        TCGA-BR-4357        TCGA-BR-4361        TCGA-BR-4362 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-4363        TCGA-BR-4366        TCGA-BR-4368        TCGA-BR-4369 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-4370        TCGA-BR-4371        TCGA-BR-6452        TCGA-BR-6453 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565        TCGA-BR-6566 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707        TCGA-BR-6710 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803        TCGA-BR-6852 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703        TCGA-BR-7715 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-7716        TCGA-BR-7717        TCGA-BR-7722        TCGA-BR-7723 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7958 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8080 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8081        TCGA-BR-8284        TCGA-BR-8286        TCGA-BR-8289 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8296        TCGA-BR-8297 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8360        TCGA-BR-8361        TCGA-BR-8363        TCGA-BR-8364 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8365        TCGA-BR-8366        TCGA-BR-8367        TCGA-BR-8368 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8369        TCGA-BR-8370        TCGA-BR-8371        TCGA-BR-8372 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8380        TCGA-BR-8381        TCGA-BR-8382        TCGA-BR-8384 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8483        TCGA-BR-8484        TCGA-BR-8485        TCGA-BR-8486 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8588        TCGA-BR-8589        TCGA-BR-8590        TCGA-BR-8591 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8592        TCGA-BR-8676        TCGA-BR-8677        TCGA-BR-8678 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8679        TCGA-BR-8680        TCGA-BR-8682        TCGA-BR-8683 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8686        TCGA-BR-8687        TCGA-BR-8690        TCGA-BR-A44T 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-A44U        TCGA-BR-A452        TCGA-BR-A453        TCGA-BR-A4CQ 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU        TCGA-BR-A4IV 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1        TCGA-BR-A4J2 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-A4J4        TCGA-BR-A4J6        TCGA-BR-A4J7        TCGA-BR-A4J8 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-A4PD        TCGA-BR-A4PE        TCGA-BR-A4PF        TCGA-BR-A4QI 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-A4QL        TCGA-BR-A4QM        TCGA-CD-5798        TCGA-CD-5799 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8525 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8528        TCGA-CD-8529 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-8530        TCGA-CD-8531        TCGA-CD-8532        TCGA-CD-8534 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-8535        TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-A489        TCGA-CD-A48A        TCGA-CD-A48C        TCGA-CD-A4MG 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-A4MH        TCGA-CD-A4MI        TCGA-CD-A4MJ        TCGA-CG-4300 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-4301        TCGA-CG-4304        TCGA-CG-4305        TCGA-CG-4306 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-4436        TCGA-CG-4437        TCGA-CG-4438        TCGA-CG-4442 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-4443        TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469        TCGA-CG-4474 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-4475        TCGA-CG-4476        TCGA-CG-4477        TCGA-CG-5717 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5726        TCGA-CG-5727 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-5728        TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-5734        TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6527 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-D7-8570        TCGA-D7-8572 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-8573        TCGA-D7-8574        TCGA-D7-8575        TCGA-D7-8578 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-A4YT        TCGA-D7-A4YU        TCGA-D7-A4YV        TCGA-D7-A4YX 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-A4YY        TCGA-D7-A4Z0        TCGA-EQ-8122        TCGA-EQ-A4SO 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-F1-6874        TCGA-F1-6875        TCGA-F1-A448        TCGA-FP-7916 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-FP-7998        TCGA-HF-7132        TCGA-HF-7133        TCGA-HF-7136 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-HJ-7597        TCGA-HU-8602        TCGA-HU-8608        TCGA-HU-8610 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-HU-A4GF        TCGA-HU-A4GQ        TCGA-HU-A4GT        TCGA-HU-A4GX 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-HU-A4GY        TCGA-HU-A4H2        TCGA-HU-A4H3        TCGA-HU-A4H4 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-HU-A4H5        TCGA-HU-A4HD        TCGA-IN-7806        TCGA-IN-7808 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-IN-8462        TCGA-IN-8663        TCGA-IP-7968 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAS2R10 MUTATED        0      2      0      0
  TAS2R10 WILD-TYPE     98     42     50     57
D447V4, multiclass
[1] "Remove cluster labels:" "TAS2R10 MUTATED"       
clus
  TAS2R10 MUTATED TAS2R10 WILD-TYPE 
                2               247 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-4183        TCGA-BR-4184 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-4187        TCGA-BR-4188        TCGA-BR-4191        TCGA-BR-4201 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-4253        TCGA-BR-4255        TCGA-BR-4256        TCGA-BR-4257 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-4267        TCGA-BR-4279        TCGA-BR-4280        TCGA-BR-4292 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-4294        TCGA-BR-4357        TCGA-BR-4361        TCGA-BR-4362 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-4363        TCGA-BR-4366        TCGA-BR-4368        TCGA-BR-4369 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-4370        TCGA-BR-4371        TCGA-BR-6452        TCGA-BR-6453 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6564        TCGA-BR-6565        TCGA-BR-6566 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707        TCGA-BR-6710 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803        TCGA-BR-6852 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703        TCGA-BR-7715 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-7716        TCGA-BR-7717        TCGA-BR-7722        TCGA-BR-7723 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7958 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8080 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8081        TCGA-BR-8284        TCGA-BR-8286        TCGA-BR-8289 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8296        TCGA-BR-8297 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8360        TCGA-BR-8361        TCGA-BR-8363        TCGA-BR-8364 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8365        TCGA-BR-8366        TCGA-BR-8367        TCGA-BR-8368 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8369        TCGA-BR-8370        TCGA-BR-8371        TCGA-BR-8372 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8380        TCGA-BR-8381        TCGA-BR-8382        TCGA-BR-8384 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8483        TCGA-BR-8484        TCGA-BR-8485        TCGA-BR-8486 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8588        TCGA-BR-8589        TCGA-BR-8590        TCGA-BR-8591 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8592        TCGA-BR-8676        TCGA-BR-8677        TCGA-BR-8678 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8679        TCGA-BR-8680        TCGA-BR-8682        TCGA-BR-8683 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8686        TCGA-BR-8687        TCGA-BR-8690        TCGA-BR-A44T 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-A44U        TCGA-BR-A452        TCGA-BR-A453        TCGA-BR-A4CQ 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU        TCGA-BR-A4IV 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1        TCGA-BR-A4J2 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-A4J4        TCGA-BR-A4J6        TCGA-BR-A4J7        TCGA-BR-A4J8 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-A4PD        TCGA-BR-A4PE        TCGA-BR-A4PF        TCGA-BR-A4QI 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-A4QL        TCGA-BR-A4QM        TCGA-CD-5798        TCGA-CD-5799 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8525 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8528        TCGA-CD-8529 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-8530        TCGA-CD-8531        TCGA-CD-8532        TCGA-CD-8534 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-8535        TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-A489        TCGA-CD-A48A        TCGA-CD-A48C        TCGA-CD-A4MG 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-A4MH        TCGA-CD-A4MI        TCGA-CD-A4MJ        TCGA-CG-4300 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-4301        TCGA-CG-4304        TCGA-CG-4305        TCGA-CG-4306 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-4436        TCGA-CG-4437        TCGA-CG-4438        TCGA-CG-4442 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-4443        TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469        TCGA-CG-4474 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-4475        TCGA-CG-4476        TCGA-CG-4477        TCGA-CG-5717 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5726        TCGA-CG-5727 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-5728        TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-5734        TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6527 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-D7-8570        TCGA-D7-8572 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-8573        TCGA-D7-8574        TCGA-D7-8575        TCGA-D7-8578 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-A4YT        TCGA-D7-A4YU        TCGA-D7-A4YV        TCGA-D7-A4YX 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-A4YY        TCGA-D7-A4Z0        TCGA-EQ-8122        TCGA-EQ-A4SO 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-F1-6874        TCGA-F1-6875        TCGA-F1-A448        TCGA-FP-7916 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-FP-7998        TCGA-HF-7132        TCGA-HF-7133        TCGA-HF-7136 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-HJ-7597        TCGA-HU-8602        TCGA-HU-8608        TCGA-HU-8610 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-HU-A4GF        TCGA-HU-A4GQ        TCGA-HU-A4GT        TCGA-HU-A4GX 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-HU-A4GY        TCGA-HU-A4H2        TCGA-HU-A4H3        TCGA-HU-A4H4 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-HU-A4H5        TCGA-HU-A4HD        TCGA-IN-7806        TCGA-IN-7808 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-IN-8462        TCGA-IN-8663        TCGA-IP-7968 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAS2R10 MUTATED        1      0      0      2      0
  TAS2R10 WILD-TYPE     61     59     40     35     59
D447V5, multiclass
        clus
vv       TAS2R10 MUTATED TAS2R10 WILD-TYPE
  CLUS_1               1                61
  CLUS_2               0                59
  CLUS_3               0                40
  CLUS_4               2                35
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TAS2R10 MUTATED        0      0      3
  TAS2R10 WILD-TYPE    106     54     94
D447V6, multiclass
        clus
vv       TAS2R10 MUTATED TAS2R10 WILD-TYPE
  CLUS_1               0               106
  CLUS_2               0                54
  CLUS_3               3                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TAS2R10 MUTATED        3      0      0
  TAS2R10 WILD-TYPE    120     95     71
D447V7, multiclass
        clus
vv       TAS2R10 MUTATED TAS2R10 WILD-TYPE
  CLUS_1               3               120
  CLUS_2               0                95
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TAS2R10 MUTATED        3      0      0
  TAS2R10 WILD-TYPE    154     63     69
D447V8, multiclass
        clus
vv       TAS2R10 MUTATED TAS2R10 WILD-TYPE
  CLUS_1               3               154
  CLUS_2               0                63
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAS2R10 MUTATED        0      1      1      0      0      0
  TAS2R10 WILD-TYPE     33     18     58     39     16     45
D447V9, multiclass
[1] "Remove cluster labels:" "TAS2R10 MUTATED"       
clus
  TAS2R10 MUTATED TAS2R10 WILD-TYPE 
                2               209 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6453 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-7707        TCGA-BR-7715        TCGA-BR-7717        TCGA-BR-7723 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7958 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8077 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8078        TCGA-BR-8080        TCGA-BR-8284        TCGA-BR-8286 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8289        TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8296 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8297        TCGA-BR-8360        TCGA-BR-8361        TCGA-BR-8363 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8364        TCGA-BR-8365        TCGA-BR-8368        TCGA-BR-8369 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8370        TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8373 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8380        TCGA-BR-8381        TCGA-BR-8382        TCGA-BR-8384 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8483        TCGA-BR-8485        TCGA-BR-8486        TCGA-BR-8487 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8588        TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8676        TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8680        TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8687 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8690        TCGA-BR-A44T        TCGA-BR-A452        TCGA-BR-A453 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-A4J6        TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-A4QI        TCGA-BR-A4QL        TCGA-BR-A4QM        TCGA-CD-5798 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-5799        TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-5803        TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-8525        TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8529 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-8530        TCGA-CD-8531        TCGA-CD-8532        TCGA-CD-8534 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-8535        TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-A489        TCGA-CD-A48C        TCGA-CD-A4MG        TCGA-CD-A4MH 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-A4MI        TCGA-CG-4437        TCGA-CG-4441        TCGA-CG-4449 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728        TCGA-CG-5730 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734        TCGA-D7-5577 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518        TCGA-D7-6519 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522        TCGA-D7-6524 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527        TCGA-D7-6528 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-6822        TCGA-D7-8570        TCGA-D7-8572        TCGA-D7-8574 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-8575        TCGA-D7-8576        TCGA-D7-8578        TCGA-D7-8579 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-A4YT        TCGA-D7-A4YU        TCGA-D7-A4YV        TCGA-D7-A4YY 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-A4Z0        TCGA-EQ-5647        TCGA-EQ-8122        TCGA-F1-6874 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-F1-6875        TCGA-F1-A448        TCGA-FP-7735        TCGA-FP-7829 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-FP-7998        TCGA-FP-8099        TCGA-FP-8209        TCGA-FP-8210 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-FP-8211        TCGA-FP-8631        TCGA-FP-A4BE        TCGA-HF-7132 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-HF-7136        TCGA-HU-8243        TCGA-HU-8602        TCGA-HU-8604 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-HU-8608        TCGA-HU-A4G3        TCGA-HU-A4GC        TCGA-HU-A4GD 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GN        TCGA-HU-A4GQ 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-HU-A4GT        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H2 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4H6        TCGA-HU-A4H8 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-IP-7968 
"TAS2R10 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAS2R10 MUTATED        2      0      0      0      0      0
  TAS2R10 WILD-TYPE     45     39     35     32     23     35
D447V10, multiclass
[1] "Remove cluster labels:" "TAS2R10 MUTATED"       
clus
  TAS2R10 MUTATED TAS2R10 WILD-TYPE 
                2               209 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6453 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-7707        TCGA-BR-7715        TCGA-BR-7717        TCGA-BR-7723 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7958 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8077 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8078        TCGA-BR-8080        TCGA-BR-8284        TCGA-BR-8286 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8289        TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8296 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8297        TCGA-BR-8360        TCGA-BR-8361        TCGA-BR-8363 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8364        TCGA-BR-8365        TCGA-BR-8368        TCGA-BR-8369 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8370        TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8373 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8380        TCGA-BR-8381        TCGA-BR-8382        TCGA-BR-8384 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8483        TCGA-BR-8485        TCGA-BR-8486        TCGA-BR-8487 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8588        TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8676        TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8680        TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8687 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-8690        TCGA-BR-A44T        TCGA-BR-A452        TCGA-BR-A453 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-A4J6        TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-BR-A4QI        TCGA-BR-A4QL        TCGA-BR-A4QM        TCGA-CD-5798 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-5799        TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-5803        TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-8525        TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8529 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-8530        TCGA-CD-8531        TCGA-CD-8532        TCGA-CD-8534 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-8535        TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-A489        TCGA-CD-A48C        TCGA-CD-A4MG        TCGA-CD-A4MH 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CD-A4MI        TCGA-CG-4437        TCGA-CG-4441        TCGA-CG-4449 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728        TCGA-CG-5730 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734        TCGA-D7-5577 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518        TCGA-D7-6519 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522        TCGA-D7-6524 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527        TCGA-D7-6528 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-6822        TCGA-D7-8570        TCGA-D7-8572        TCGA-D7-8574 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-8575        TCGA-D7-8576        TCGA-D7-8578        TCGA-D7-8579 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-A4YT        TCGA-D7-A4YU        TCGA-D7-A4YV        TCGA-D7-A4YY 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-D7-A4Z0        TCGA-EQ-5647        TCGA-EQ-8122        TCGA-F1-6874 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-F1-6875        TCGA-F1-A448        TCGA-FP-7735        TCGA-FP-7829 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-FP-7998        TCGA-FP-8099        TCGA-FP-8209        TCGA-FP-8210 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-FP-8211        TCGA-FP-8631        TCGA-FP-A4BE        TCGA-HF-7132 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-HF-7136        TCGA-HU-8243        TCGA-HU-8602        TCGA-HU-8604 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-HU-8608        TCGA-HU-A4G3        TCGA-HU-A4GC        TCGA-HU-A4GD 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GN        TCGA-HU-A4GQ 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-HU-A4GT        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H2 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4H6        TCGA-HU-A4H8 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" "TAS2R10 WILD-TYPE" 
       TCGA-IP-7968 
"TAS2R10 WILD-TYPE" 

Clustering(448) Variable = PTPDC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPDC1 MUTATED        2      5      0      1      0
  PTPDC1 WILD-TYPE     77    121     27     42     12
D448V1, multiclass
        clus
vv       PTPDC1 MUTATED PTPDC1 WILD-TYPE
  CLUS_1              2               77
  CLUS_2              5              121
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPDC1 MUTATED        2      2      1      2
  PTPDC1 WILD-TYPE     69     74     33     61
D448V2, multiclass
        clus
vv       PTPDC1 MUTATED PTPDC1 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              2               74
  CLUS_3              1               33
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPDC1 MUTATED        0      2      4      0      1
  PTPDC1 WILD-TYPE     16     60     47     65     54
D448V3, multiclass
        clus
vv       PTPDC1 MUTATED PTPDC1 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              2               60
  CLUS_3              4               47
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPDC1 MUTATED        3      3      1      0
  PTPDC1 WILD-TYPE     95     41     49     57
D448V4, multiclass
        clus
vv       PTPDC1 MUTATED PTPDC1 WILD-TYPE
  CLUS_1              3               95
  CLUS_2              3               41
  CLUS_3              1               49
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPDC1 MUTATED        2      1      0      2      3
  PTPDC1 WILD-TYPE     60     58     40     35     56
D448V5, multiclass
        clus
vv       PTPDC1 MUTATED PTPDC1 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              2               35
  CLUS_5              3               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPDC1 MUTATED        2      0      6
  PTPDC1 WILD-TYPE    104     54     91
D448V6, multiclass
        clus
vv       PTPDC1 MUTATED PTPDC1 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              0               54
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPDC1 MUTATED        5      1      2
  PTPDC1 WILD-TYPE    118     94     69
D448V7, multiclass
        clus
vv       PTPDC1 MUTATED PTPDC1 WILD-TYPE
  CLUS_1              5              118
  CLUS_2              1               94
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPDC1 MUTATED        6      1      1
  PTPDC1 WILD-TYPE    151     62     68
D448V8, multiclass
        clus
vv       PTPDC1 MUTATED PTPDC1 WILD-TYPE
  CLUS_1              6              151
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTPDC1 MUTATED        1      0      4      1      0      0
  PTPDC1 WILD-TYPE     32     19     55     38     16     45
D448V9, multiclass
        clus
vv       PTPDC1 MUTATED PTPDC1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               19
  CLUS_3              4               55
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTPDC1 MUTATED        2      0      3      1      0      0
  PTPDC1 WILD-TYPE     45     39     32     31     23     35
D448V10, multiclass
        clus
vv       PTPDC1 MUTATED PTPDC1 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(449) Variable = THEMIS MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THEMIS MUTATED        0      8      0      0      0
  THEMIS WILD-TYPE     79    118     27     43     12
D449V1, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              0               79
  CLUS_2              8              118
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THEMIS MUTATED        0      4      0      1
  THEMIS WILD-TYPE     71     72     34     62
D449V2, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              0               71
  CLUS_2              4               72
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THEMIS MUTATED        0      3      2      1      2
  THEMIS WILD-TYPE     16     59     49     64     53
D449V3, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              0               16
  CLUS_2              3               59
  CLUS_3              2               49
  CLUS_4              1               64
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THEMIS MUTATED        0      5      2      1
  THEMIS WILD-TYPE     98     39     48     56
D449V4, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              0               98
  CLUS_2              5               39
  CLUS_3              2               48
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THEMIS MUTATED        4      0      0      1      0
  THEMIS WILD-TYPE     58     59     40     36     59
D449V5, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              4               58
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  THEMIS MUTATED        2      0      3
  THEMIS WILD-TYPE    104     54     94
D449V6, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              2              104
  CLUS_2              0               54
  CLUS_3              3               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  THEMIS MUTATED        7      1      0
  THEMIS WILD-TYPE    116     94     71
D449V7, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              7              116
  CLUS_2              1               94
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  THEMIS MUTATED        6      2      0
  THEMIS WILD-TYPE    151     61     69
D449V8, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              6              151
  CLUS_2              2               61
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  THEMIS MUTATED        2      0      3      0      0      0
  THEMIS WILD-TYPE     31     19     56     39     16     45
D449V9, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               19
  CLUS_3              3               56
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  THEMIS MUTATED        2      0      2      1      0      0
  THEMIS WILD-TYPE     45     39     33     31     23     35
D449V10, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(450) Variable = BRCA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRCA1 MUTATED        3      9      1      1      1
  BRCA1 WILD-TYPE     76    117     26     42     11
D450V1, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             3              76
  CLUS_2             9             117
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRCA1 MUTATED        1      8      1      0
  BRCA1 WILD-TYPE     70     68     33     63
D450V2, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             8              68
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRCA1 MUTATED        0      7      2      0      4
  BRCA1 WILD-TYPE     16     55     49     65     51
D450V3, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             7              55
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRCA1 MUTATED        3      6      4      0
  BRCA1 WILD-TYPE     95     38     46     57
D450V4, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             6              38
  CLUS_3             4              46
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRCA1 MUTATED        7      0      1      2      2
  BRCA1 WILD-TYPE     55     59     39     35     57
D450V5, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             7              55
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             2              35
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRCA1 MUTATED        3      1      8
  BRCA1 WILD-TYPE    103     53     89
D450V6, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             1              53
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRCA1 MUTATED        9      3      3
  BRCA1 WILD-TYPE    114     92     68
D450V7, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             9             114
  CLUS_2             3              92
  CLUS_3             3              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRCA1 MUTATED       11      1      3
  BRCA1 WILD-TYPE    146     62     66
D450V8, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1            11             146
  CLUS_2             1              62
  CLUS_3             3              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BRCA1 MUTATED        2      2      3      2      0      0
  BRCA1 WILD-TYPE     31     17     56     37     16     45
D450V9, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             2              17
  CLUS_3             3              56
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BRCA1 MUTATED        4      0      1      1      2      1
  BRCA1 WILD-TYPE     43     39     34     31     21     34
D450V10, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             1              31
  CLUS_5             2              21
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(451) Variable = KCNJ10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNJ10 MUTATED        0     10      1      0      0
  KCNJ10 WILD-TYPE     79    116     26     43     12
D451V1, multiclass
        clus
vv       KCNJ10 MUTATED KCNJ10 WILD-TYPE
  CLUS_1              0               79
  CLUS_2             10              116
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNJ10 MUTATED        0      7      1      0
  KCNJ10 WILD-TYPE     71     69     33     63
D451V2, multiclass
        clus
vv       KCNJ10 MUTATED KCNJ10 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              7               69
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNJ10 MUTATED        0      4      2      0      4
  KCNJ10 WILD-TYPE     16     58     49     65     51
D451V3, multiclass
        clus
vv       KCNJ10 MUTATED KCNJ10 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              4               58
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              4               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNJ10 MUTATED        0      9      1      0
  KCNJ10 WILD-TYPE     98     35     49     57
D451V4, multiclass
        clus
vv       KCNJ10 MUTATED KCNJ10 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              9               35
  CLUS_3              1               49
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNJ10 MUTATED        5      0      0      4      0
  KCNJ10 WILD-TYPE     57     59     40     33     59
D451V5, multiclass
        clus
vv       KCNJ10 MUTATED KCNJ10 WILD-TYPE
  CLUS_1              5               57
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              4               33
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KCNJ10 MUTATED        1      0      8
  KCNJ10 WILD-TYPE    105     54     89
D451V6, multiclass
        clus
vv       KCNJ10 MUTATED KCNJ10 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               54
  CLUS_3              8               89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KCNJ10 MUTATED       10      0      1
  KCNJ10 WILD-TYPE    113     95     70
D451V7, multiclass
        clus
vv       KCNJ10 MUTATED KCNJ10 WILD-TYPE
  CLUS_1             10              113
  CLUS_2              0               95
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KCNJ10 MUTATED       11      0      0
  KCNJ10 WILD-TYPE    146     63     69
D451V8, multiclass
        clus
vv       KCNJ10 MUTATED KCNJ10 WILD-TYPE
  CLUS_1             11              146
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNJ10 MUTATED        1      1      4      2      0      0
  KCNJ10 WILD-TYPE     32     18     55     37     16     45
D451V9, multiclass
        clus
vv       KCNJ10 MUTATED KCNJ10 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              4               55
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNJ10 MUTATED        5      0      3      0      0      0
  KCNJ10 WILD-TYPE     42     39     32     32     23     35
D451V10, multiclass
        clus
vv       KCNJ10 MUTATED KCNJ10 WILD-TYPE
  CLUS_1              5               42
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(452) Variable = TNK2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNK2 MUTATED        2      9      0      0      0
  TNK2 WILD-TYPE     77    117     27     43     12
D452V1, multiclass
        clus
vv       TNK2 MUTATED TNK2 WILD-TYPE
  CLUS_1            2             77
  CLUS_2            9            117
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNK2 MUTATED        1      6      2      1
  TNK2 WILD-TYPE     70     70     32     62
D452V2, multiclass
        clus
vv       TNK2 MUTATED TNK2 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            6             70
  CLUS_3            2             32
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNK2 MUTATED        2      1      3      0      3
  TNK2 WILD-TYPE     14     61     48     65     52
D452V3, multiclass
        clus
vv       TNK2 MUTATED TNK2 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            1             61
  CLUS_3            3             48
  CLUS_4            0             65
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNK2 MUTATED        3      4      1      1
  TNK2 WILD-TYPE     95     40     49     56
D452V4, multiclass
        clus
vv       TNK2 MUTATED TNK2 WILD-TYPE
  CLUS_1            3             95
  CLUS_2            4             40
  CLUS_3            1             49
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNK2 MUTATED        7      1      1      0      1
  TNK2 WILD-TYPE     55     58     39     37     58
D452V5, multiclass
        clus
vv       TNK2 MUTATED TNK2 WILD-TYPE
  CLUS_1            7             55
  CLUS_2            1             58
  CLUS_3            1             39
  CLUS_4            0             37
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TNK2 MUTATED        1      1      8
  TNK2 WILD-TYPE    105     53     89
D452V6, multiclass
        clus
vv       TNK2 MUTATED TNK2 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            1             53
  CLUS_3            8             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TNK2 MUTATED        7      0      4
  TNK2 WILD-TYPE    116     95     67
D452V7, multiclass
        clus
vv       TNK2 MUTATED TNK2 WILD-TYPE
  CLUS_1            7            116
  CLUS_2            0             95
  CLUS_3            4             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TNK2 MUTATED       10      0      1
  TNK2 WILD-TYPE    147     63     68
D452V8, multiclass
        clus
vv       TNK2 MUTATED TNK2 WILD-TYPE
  CLUS_1           10            147
  CLUS_2            0             63
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNK2 MUTATED        2      2      0      4      0      0
  TNK2 WILD-TYPE     31     17     59     35     16     45
D452V9, multiclass
        clus
vv       TNK2 MUTATED TNK2 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            2             17
  CLUS_3            0             59
  CLUS_4            4             35
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNK2 MUTATED        3      0      0      2      3      0
  TNK2 WILD-TYPE     44     39     35     30     20     35
D452V10, multiclass
        clus
vv       TNK2 MUTATED TNK2 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            0             39
  CLUS_3            0             35
  CLUS_4            2             30
  CLUS_5            3             20
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(453) Variable = TMEM92 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM92 MUTATED        1      2      0      0      0
  TMEM92 WILD-TYPE     78    124     27     43     12
D453V1, multiclass
        clus
vv       TMEM92 MUTATED TMEM92 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              2              124
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM92 MUTATED        1      0      0      0
  TMEM92 WILD-TYPE     70     76     34     63
D453V2, multiclass
[1] "Remove cluster labels:" "TMEM92 MUTATED"        
clus
  TMEM92 MUTATED TMEM92 WILD-TYPE 
               1              243 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6453 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-7707       TCGA-BR-7715       TCGA-BR-7716       TCGA-BR-7717 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-7722       TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8059       TCGA-BR-8077       TCGA-BR-8078       TCGA-BR-8080 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8081       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8297 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8360       TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8369       TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8373       TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8384       TCGA-BR-8483       TCGA-BR-8484       TCGA-BR-8485 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8486       TCGA-BR-8487       TCGA-BR-8588       TCGA-BR-8589 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8686       TCGA-BR-8687 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8690       TCGA-BR-A44T       TCGA-BR-A44U       TCGA-BR-A452 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR       TCGA-BR-A4CS 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY       TCGA-BR-A4IZ 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4J1       TCGA-BR-A4J2       TCGA-BR-A4J4       TCGA-BR-A4J6 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4PE 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4PF       TCGA-BR-A4QI       TCGA-BR-A4QL       TCGA-BR-A4QM 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800       TCGA-CD-5801 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5804       TCGA-CD-5813 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8527 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-8528       TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-8532       TCGA-CD-8534       TCGA-CD-8535       TCGA-CD-8536 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489       TCGA-CD-A48A 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-A4MJ       TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-5717 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5726 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8573       TCGA-D7-8574 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-8575       TCGA-D7-8576       TCGA-D7-8578       TCGA-D7-8579 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-A4YT       TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YX 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-A4YY       TCGA-D7-A4Z0       TCGA-EQ-5647       TCGA-EQ-8122 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-EQ-A4SO       TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F1-A448       TCGA-FP-7735       TCGA-FP-7829       TCGA-FP-7916 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-FP-7998       TCGA-FP-8099       TCGA-FP-8209       TCGA-FP-8210 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-FP-8211       TCGA-FP-8631       TCGA-FP-A4BE       TCGA-FP-A4BF 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HF-7132       TCGA-HF-7133       TCGA-HF-7136       TCGA-HJ-7597 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-8243       TCGA-HU-8245       TCGA-HU-8249       TCGA-HU-8602 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8608       TCGA-HU-8610       TCGA-HU-A4G2 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4G3       TCGA-HU-A4G6       TCGA-HU-A4G8       TCGA-HU-A4G9 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4GC       TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GN 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4GP       TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GU 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H0       TCGA-HU-A4H2 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4H8       TCGA-HU-A4HD       TCGA-IN-7806       TCGA-IN-7808 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-IN-8462       TCGA-IN-8663       TCGA-IP-7968 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM92 MUTATED        0      2      0      0      0
  TMEM92 WILD-TYPE     16     60     51     65     55
D453V3, multiclass
[1] "Remove cluster labels:" "TMEM92 MUTATED"        
clus
  TMEM92 MUTATED TMEM92 WILD-TYPE 
               2              247 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-4187       TCGA-BR-4188       TCGA-BR-4191       TCGA-BR-4201 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256       TCGA-BR-4257 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4292       TCGA-BR-4294 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-4357       TCGA-BR-4361       TCGA-BR-4362       TCGA-BR-4363 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-4366       TCGA-BR-4368       TCGA-BR-4369       TCGA-BR-4370 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-4371       TCGA-BR-6452       TCGA-BR-6453       TCGA-BR-6454 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457       TCGA-BR-6458 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566       TCGA-BR-6705 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6710       TCGA-BR-6801 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7715       TCGA-BR-7716 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723       TCGA-BR-7851 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8080       TCGA-BR-8081 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289       TCGA-BR-8291 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8297       TCGA-BR-8360 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368       TCGA-BR-8369 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8380 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8484       TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8589       TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8686 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T       TCGA-BR-A44U 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J2       TCGA-BR-A4J4 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4PE       TCGA-BR-A4PF       TCGA-BR-A4QI       TCGA-BR-A4QL 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5804 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-8527       TCGA-CD-8528       TCGA-CD-8529       TCGA-CD-8530 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8534       TCGA-CD-8535 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-A48A       TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300       TCGA-CG-4301 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4443       TCGA-CG-4444 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4465       TCGA-CG-4466 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-4469       TCGA-CG-4474       TCGA-CG-4475       TCGA-CG-4476 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5723       TCGA-CG-5724 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6525       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8573       TCGA-D7-8574 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-8575       TCGA-D7-8578       TCGA-D7-A4YT       TCGA-D7-A4YU 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY       TCGA-D7-A4Z0 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-EQ-8122       TCGA-EQ-A4SO       TCGA-F1-6177       TCGA-F1-6874 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7916       TCGA-FP-7998 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HF-7132       TCGA-HF-7133       TCGA-HF-7136       TCGA-HJ-7597 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-8602       TCGA-HU-8608       TCGA-HU-8610       TCGA-HU-A4GF 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GU       TCGA-HU-A4GX 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4GY       TCGA-HU-A4H2       TCGA-HU-A4H3       TCGA-HU-A4H4 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4H5       TCGA-HU-A4HD       TCGA-IN-7806       TCGA-IN-7808 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-IN-8462       TCGA-IN-8663       TCGA-IP-7968 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM92 MUTATED        0      2      0      0
  TMEM92 WILD-TYPE     98     42     50     57
D453V4, multiclass
[1] "Remove cluster labels:" "TMEM92 MUTATED"        
clus
  TMEM92 MUTATED TMEM92 WILD-TYPE 
               2              247 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-4187       TCGA-BR-4188       TCGA-BR-4191       TCGA-BR-4201 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256       TCGA-BR-4257 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4292       TCGA-BR-4294 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-4357       TCGA-BR-4361       TCGA-BR-4362       TCGA-BR-4363 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-4366       TCGA-BR-4368       TCGA-BR-4369       TCGA-BR-4370 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-4371       TCGA-BR-6452       TCGA-BR-6453       TCGA-BR-6454 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457       TCGA-BR-6458 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566       TCGA-BR-6705 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6710       TCGA-BR-6801 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7715       TCGA-BR-7716 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723       TCGA-BR-7851 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8080       TCGA-BR-8081 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289       TCGA-BR-8291 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8297       TCGA-BR-8360 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368       TCGA-BR-8369 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8380 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8484       TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8589       TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8686 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T       TCGA-BR-A44U 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J2       TCGA-BR-A4J4 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4PE       TCGA-BR-A4PF       TCGA-BR-A4QI       TCGA-BR-A4QL 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5804 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-8527       TCGA-CD-8528       TCGA-CD-8529       TCGA-CD-8530 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8534       TCGA-CD-8535 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-A48A       TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300       TCGA-CG-4301 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4443       TCGA-CG-4444 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4465       TCGA-CG-4466 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-4469       TCGA-CG-4474       TCGA-CG-4475       TCGA-CG-4476 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5723       TCGA-CG-5724 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6525       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8573       TCGA-D7-8574 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-8575       TCGA-D7-8578       TCGA-D7-A4YT       TCGA-D7-A4YU 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY       TCGA-D7-A4Z0 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-EQ-8122       TCGA-EQ-A4SO       TCGA-F1-6177       TCGA-F1-6874 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7916       TCGA-FP-7998 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HF-7132       TCGA-HF-7133       TCGA-HF-7136       TCGA-HJ-7597 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-8602       TCGA-HU-8608       TCGA-HU-8610       TCGA-HU-A4GF 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GU       TCGA-HU-A4GX 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4GY       TCGA-HU-A4H2       TCGA-HU-A4H3       TCGA-HU-A4H4 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4H5       TCGA-HU-A4HD       TCGA-IN-7806       TCGA-IN-7808 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-IN-8462       TCGA-IN-8663       TCGA-IP-7968 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM92 MUTATED        1      0      0      1      0
  TMEM92 WILD-TYPE     61     59     40     36     59
D453V5, multiclass
[1] "Remove cluster labels:" "TMEM92 MUTATED"        
clus
  TMEM92 MUTATED TMEM92 WILD-TYPE 
               2              255 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4187       TCGA-BR-4191 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-4201       TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-4257       TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4292 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-4294       TCGA-BR-4357       TCGA-BR-4361       TCGA-BR-4362 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-4363       TCGA-BR-4366       TCGA-BR-4368       TCGA-BR-4369 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-4370       TCGA-BR-4371       TCGA-BR-6452       TCGA-BR-6453 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-7707       TCGA-BR-7715       TCGA-BR-7716       TCGA-BR-7717 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-7722       TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8059       TCGA-BR-8077       TCGA-BR-8078       TCGA-BR-8080 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8081       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8297       TCGA-BR-8361       TCGA-BR-8363 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8364       TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8371       TCGA-BR-8372 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8373       TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8384       TCGA-BR-8483       TCGA-BR-8484       TCGA-BR-8485 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8486       TCGA-BR-8487       TCGA-BR-8588       TCGA-BR-8589 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8677 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8686       TCGA-BR-8687       TCGA-BR-A44T 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CR       TCGA-BR-A4CS 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY       TCGA-BR-A4IZ 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4J1       TCGA-BR-A4J2       TCGA-BR-A4J4       TCGA-BR-A4J6 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4PE 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4PF       TCGA-BR-A4QI       TCGA-CD-5798       TCGA-CD-5799 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5803       TCGA-CD-5804 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8526       TCGA-CD-8528 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-8534       TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-A487       TCGA-CD-A489       TCGA-CD-A48C       TCGA-CD-A4MG 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-A4MH       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4301 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4462 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4474 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-4475       TCGA-CG-4476       TCGA-CG-4477       TCGA-CG-5717 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5726 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5732       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-8572       TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8575 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-8576       TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-A4Z0       TCGA-EQ-8122       TCGA-EQ-A4SO       TCGA-F1-6177 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7735 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998       TCGA-FP-8099 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-FP-8209       TCGA-FP-8210       TCGA-FP-8211       TCGA-FP-8631 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-FP-A4BE       TCGA-HF-7132       TCGA-HF-7133       TCGA-HF-7136 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-8602       TCGA-HU-8604       TCGA-HU-8608       TCGA-HU-8610 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4G2       TCGA-HU-A4G3       TCGA-HU-A4G6       TCGA-HU-A4G8 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4G9       TCGA-HU-A4GC       TCGA-HU-A4GF       TCGA-HU-A4GH 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4GN       TCGA-HU-A4GP       TCGA-HU-A4GT       TCGA-HU-A4GU 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H0       TCGA-HU-A4H2 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4H8       TCGA-HU-A4HD       TCGA-IN-7806       TCGA-IN-7808 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-IN-8462       TCGA-IN-8663       TCGA-IP-7968 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM92 MUTATED        0      0      2
  TMEM92 WILD-TYPE    106     54     95
D453V6, multiclass
[1] "Remove cluster labels:" "TMEM92 MUTATED"        
clus
  TMEM92 MUTATED TMEM92 WILD-TYPE 
               2              255 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4187       TCGA-BR-4191 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-4201       TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-4257       TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4292 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-4294       TCGA-BR-4357       TCGA-BR-4361       TCGA-BR-4362 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-4363       TCGA-BR-4366       TCGA-BR-4368       TCGA-BR-4369 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-4370       TCGA-BR-4371       TCGA-BR-6452       TCGA-BR-6453 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-7707       TCGA-BR-7715       TCGA-BR-7716       TCGA-BR-7717 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-7722       TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8059       TCGA-BR-8077       TCGA-BR-8078       TCGA-BR-8080 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8081       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8297       TCGA-BR-8361       TCGA-BR-8363 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8364       TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8371       TCGA-BR-8372 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8373       TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8384       TCGA-BR-8483       TCGA-BR-8484       TCGA-BR-8485 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8486       TCGA-BR-8487       TCGA-BR-8588       TCGA-BR-8589 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8677 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8686       TCGA-BR-8687       TCGA-BR-A44T 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CR       TCGA-BR-A4CS 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY       TCGA-BR-A4IZ 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4J1       TCGA-BR-A4J2       TCGA-BR-A4J4       TCGA-BR-A4J6 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4PE 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4PF       TCGA-BR-A4QI       TCGA-CD-5798       TCGA-CD-5799 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5803       TCGA-CD-5804 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8526       TCGA-CD-8528 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-8534       TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-A487       TCGA-CD-A489       TCGA-CD-A48C       TCGA-CD-A4MG 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-A4MH       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4301 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4462 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4474 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-4475       TCGA-CG-4476       TCGA-CG-4477       TCGA-CG-5717 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5726 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5732       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-8572       TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8575 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-8576       TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-A4Z0       TCGA-EQ-8122       TCGA-EQ-A4SO       TCGA-F1-6177 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7735 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998       TCGA-FP-8099 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-FP-8209       TCGA-FP-8210       TCGA-FP-8211       TCGA-FP-8631 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-FP-A4BE       TCGA-HF-7132       TCGA-HF-7133       TCGA-HF-7136 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-8602       TCGA-HU-8604       TCGA-HU-8608       TCGA-HU-8610 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4G2       TCGA-HU-A4G3       TCGA-HU-A4G6       TCGA-HU-A4G8 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4G9       TCGA-HU-A4GC       TCGA-HU-A4GF       TCGA-HU-A4GH 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4GN       TCGA-HU-A4GP       TCGA-HU-A4GT       TCGA-HU-A4GU 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H0       TCGA-HU-A4H2 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4H8       TCGA-HU-A4HD       TCGA-IN-7806       TCGA-IN-7808 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-IN-8462       TCGA-IN-8663       TCGA-IP-7968 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM92 MUTATED        2      0      1
  TMEM92 WILD-TYPE    121     95     70
D453V7, multiclass
        clus
vv       TMEM92 MUTATED TMEM92 WILD-TYPE
  CLUS_1              2              121
  CLUS_2              0               95
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM92 MUTATED        2      0      1
  TMEM92 WILD-TYPE    155     63     68
D453V8, multiclass
        clus
vv       TMEM92 MUTATED TMEM92 WILD-TYPE
  CLUS_1              2              155
  CLUS_2              0               63
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM92 MUTATED        1      0      0      0      0      0
  TMEM92 WILD-TYPE     32     19     59     39     16     45
D453V9, multiclass
[1] "Remove cluster labels:" "TMEM92 MUTATED"        
clus
  TMEM92 MUTATED TMEM92 WILD-TYPE 
               1              210 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6453 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-7707       TCGA-BR-7715       TCGA-BR-7717       TCGA-BR-7723 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8077 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8078       TCGA-BR-8080       TCGA-BR-8284       TCGA-BR-8286 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8289       TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8296 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8297       TCGA-BR-8360       TCGA-BR-8361       TCGA-BR-8363 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8364       TCGA-BR-8365       TCGA-BR-8368       TCGA-BR-8369 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8483       TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8487 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8588       TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8687 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8690       TCGA-BR-A44T       TCGA-BR-A452       TCGA-BR-A453 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4CQ       TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4IV       TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4QI       TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-5799       TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-5803       TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8529 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8534 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-A489       TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-A4MI       TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-4449 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8574 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-8575       TCGA-D7-8576       TCGA-D7-8578       TCGA-D7-8579 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-A4YT       TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YY 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-A4Z0       TCGA-EQ-5647       TCGA-EQ-8122       TCGA-F1-6177 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7735 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7998       TCGA-FP-8099       TCGA-FP-8209 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-FP-8210       TCGA-FP-8211       TCGA-FP-8631       TCGA-FP-A4BE 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HF-7132       TCGA-HF-7136       TCGA-HU-8243       TCGA-HU-8602 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8608       TCGA-HU-A4G3       TCGA-HU-A4G8 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4GC       TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GN 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GX       TCGA-HU-A4GY 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4H2       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4H8       TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-IN-8663       TCGA-IP-7968 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM92 MUTATED        0      0      0      0      0      1
  TMEM92 WILD-TYPE     47     39     35     32     23     34
D453V10, multiclass
[1] "Remove cluster labels:" "TMEM92 MUTATED"        
clus
  TMEM92 MUTATED TMEM92 WILD-TYPE 
               1              210 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6453 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-7707       TCGA-BR-7715       TCGA-BR-7717       TCGA-BR-7723 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8077 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8078       TCGA-BR-8080       TCGA-BR-8284       TCGA-BR-8286 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8289       TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8296 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8297       TCGA-BR-8360       TCGA-BR-8361       TCGA-BR-8363 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8364       TCGA-BR-8365       TCGA-BR-8368       TCGA-BR-8369 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8483       TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8487 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8588       TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8687 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-8690       TCGA-BR-A44T       TCGA-BR-A452       TCGA-BR-A453 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4CQ       TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4IV       TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-BR-A4QI       TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-5799       TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-5803       TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8529 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8534 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-A489       TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CD-A4MI       TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-4449 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8574 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-8575       TCGA-D7-8576       TCGA-D7-8578       TCGA-D7-8579 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-A4YT       TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YY 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-D7-A4Z0       TCGA-EQ-5647       TCGA-EQ-8122       TCGA-F1-6177 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7735 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7998       TCGA-FP-8099       TCGA-FP-8209 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-FP-8210       TCGA-FP-8211       TCGA-FP-8631       TCGA-FP-A4BE 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HF-7132       TCGA-HF-7136       TCGA-HU-8243       TCGA-HU-8602 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8608       TCGA-HU-A4G3       TCGA-HU-A4G8 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4GC       TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GN 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GX       TCGA-HU-A4GY 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4H2       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-HU-A4H8       TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 
      TCGA-IN-8663       TCGA-IP-7968 
"TMEM92 WILD-TYPE" "TMEM92 WILD-TYPE" 

Clustering(454) Variable = KCNH3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH3 MUTATED        0     14      1      1      0
  KCNH3 WILD-TYPE     79    112     26     42     12
D454V1, multiclass
        clus
vv       KCNH3 MUTATED KCNH3 WILD-TYPE
  CLUS_1             0              79
  CLUS_2            14             112
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH3 MUTATED        1     13      0      1
  KCNH3 WILD-TYPE     70     63     34     62
D454V2, multiclass
        clus
vv       KCNH3 MUTATED KCNH3 WILD-TYPE
  CLUS_1             1              70
  CLUS_2            13              63
  CLUS_3             0              34
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH3 MUTATED        0      6      3      1      4
  KCNH3 WILD-TYPE     16     56     48     64     51
D454V3, multiclass
        clus
vv       KCNH3 MUTATED KCNH3 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             6              56
  CLUS_3             3              48
  CLUS_4             1              64
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH3 MUTATED        1      7      5      1
  KCNH3 WILD-TYPE     97     37     45     56
D454V4, multiclass
        clus
vv       KCNH3 MUTATED KCNH3 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             7              37
  CLUS_3             5              45
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH3 MUTATED        7      1      1      3      0
  KCNH3 WILD-TYPE     55     58     39     34     59
D454V5, multiclass
        clus
vv       KCNH3 MUTATED KCNH3 WILD-TYPE
  CLUS_1             7              55
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNH3 MUTATED        1      1     10
  KCNH3 WILD-TYPE    105     53     87
D454V6, multiclass
        clus
vv       KCNH3 MUTATED KCNH3 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             1              53
  CLUS_3            10              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNH3 MUTATED       11      3      2
  KCNH3 WILD-TYPE    112     92     69
D454V7, multiclass
        clus
vv       KCNH3 MUTATED KCNH3 WILD-TYPE
  CLUS_1            11             112
  CLUS_2             3              92
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNH3 MUTATED       12      3      1
  KCNH3 WILD-TYPE    145     60     68
D454V8, multiclass
        clus
vv       KCNH3 MUTATED KCNH3 WILD-TYPE
  CLUS_1            12             145
  CLUS_2             3              60
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNH3 MUTATED        1      1      7      5      0      0
  KCNH3 WILD-TYPE     32     18     52     34     16     45
D454V9, multiclass
        clus
vv       KCNH3 MUTATED KCNH3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             7              52
  CLUS_4             5              34
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNH3 MUTATED        6      0      5      1      1      1
  KCNH3 WILD-TYPE     41     39     30     31     22     34
D454V10, multiclass
        clus
vv       KCNH3 MUTATED KCNH3 WILD-TYPE
  CLUS_1             6              41
  CLUS_2             0              39
  CLUS_3             5              30
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(455) Variable = LMTK3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LMTK3 MUTATED        1      6      0      0      0
  LMTK3 WILD-TYPE     78    120     27     43     12
D455V1, multiclass
        clus
vv       LMTK3 MUTATED LMTK3 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMTK3 MUTATED        1      4      0      2
  LMTK3 WILD-TYPE     70     72     34     61
D455V2, multiclass
        clus
vv       LMTK3 MUTATED LMTK3 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             4              72
  CLUS_3             0              34
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LMTK3 MUTATED        1      2      2      1      1
  LMTK3 WILD-TYPE     15     60     49     64     54
D455V3, multiclass
        clus
vv       LMTK3 MUTATED LMTK3 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              60
  CLUS_3             2              49
  CLUS_4             1              64
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMTK3 MUTATED        3      1      3      0
  LMTK3 WILD-TYPE     95     43     47     57
D455V4, multiclass
        clus
vv       LMTK3 MUTATED LMTK3 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             1              43
  CLUS_3             3              47
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LMTK3 MUTATED        5      0      0      2      1
  LMTK3 WILD-TYPE     57     59     40     35     58
D455V5, multiclass
        clus
vv       LMTK3 MUTATED LMTK3 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             2              35
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMTK3 MUTATED        2      1      5
  LMTK3 WILD-TYPE    104     53     92
D455V6, multiclass
        clus
vv       LMTK3 MUTATED LMTK3 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              53
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMTK3 MUTATED        5      1      2
  LMTK3 WILD-TYPE    118     94     69
D455V7, multiclass
        clus
vv       LMTK3 MUTATED LMTK3 WILD-TYPE
  CLUS_1             5             118
  CLUS_2             1              94
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMTK3 MUTATED        7      0      1
  LMTK3 WILD-TYPE    150     63     68
D455V8, multiclass
        clus
vv       LMTK3 MUTATED LMTK3 WILD-TYPE
  CLUS_1             7             150
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LMTK3 MUTATED        3      0      2      2      0      0
  LMTK3 WILD-TYPE     30     19     57     37     16     45
D455V9, multiclass
        clus
vv       LMTK3 MUTATED LMTK3 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              19
  CLUS_3             2              57
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LMTK3 MUTATED        3      0      2      0      1      1
  LMTK3 WILD-TYPE     44     39     33     32     22     34
D455V10, multiclass
        clus
vv       LMTK3 MUTATED LMTK3 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(456) Variable = MRPL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MRPL2 MUTATED        0      4      0      0      1
  MRPL2 WILD-TYPE     79    122     27     43     11
D456V1, multiclass
        clus
vv       MRPL2 MUTATED MRPL2 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             4             122
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL2 MUTATED        0      3      0      1
  MRPL2 WILD-TYPE     71     73     34     62
D456V2, multiclass
        clus
vv       MRPL2 MUTATED MRPL2 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             3              73
  CLUS_3             0              34
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MRPL2 MUTATED        1      3      1      0      0
  MRPL2 WILD-TYPE     15     59     50     65     55
D456V3, multiclass
        clus
vv       MRPL2 MUTATED MRPL2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3              59
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             0              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL2 MUTATED        2      3      0      0
  MRPL2 WILD-TYPE     96     41     50     57
D456V4, multiclass
        clus
vv       MRPL2 MUTATED MRPL2 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             3              41
  CLUS_3             0              50
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MRPL2 MUTATED        5      0      0      1      0
  MRPL2 WILD-TYPE     57     59     40     36     59
D456V5, multiclass
        clus
vv       MRPL2 MUTATED MRPL2 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MRPL2 MUTATED        1      0      5
  MRPL2 WILD-TYPE    105     54     92
D456V6, multiclass
        clus
vv       MRPL2 MUTATED MRPL2 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MRPL2 MUTATED        5      0      1
  MRPL2 WILD-TYPE    118     95     70
D456V7, multiclass
        clus
vv       MRPL2 MUTATED MRPL2 WILD-TYPE
  CLUS_1             5             118
  CLUS_2             0              95
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MRPL2 MUTATED        6      0      0
  MRPL2 WILD-TYPE    151     63     69
D456V8, multiclass
        clus
vv       MRPL2 MUTATED MRPL2 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MRPL2 MUTATED        1      0      1      2      0      0
  MRPL2 WILD-TYPE     32     19     58     37     16     45
D456V9, multiclass
        clus
vv       MRPL2 MUTATED MRPL2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             1              58
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MRPL2 MUTATED        2      0      1      0      1      0
  MRPL2 WILD-TYPE     45     39     34     32     22     35
D456V10, multiclass
        clus
vv       MRPL2 MUTATED MRPL2 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(457) Variable = SEZ6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEZ6 MUTATED        0      9      0      1      0
  SEZ6 WILD-TYPE     79    117     27     42     12
D457V1, multiclass
        clus
vv       SEZ6 MUTATED SEZ6 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            9            117
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEZ6 MUTATED        0      7      2      0
  SEZ6 WILD-TYPE     71     69     32     63
D457V2, multiclass
        clus
vv       SEZ6 MUTATED SEZ6 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            7             69
  CLUS_3            2             32
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEZ6 MUTATED        0      5      2      0      1
  SEZ6 WILD-TYPE     16     57     49     65     54
D457V3, multiclass
        clus
vv       SEZ6 MUTATED SEZ6 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            5             57
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEZ6 MUTATED        1      4      3      0
  SEZ6 WILD-TYPE     97     40     47     57
D457V4, multiclass
        clus
vv       SEZ6 MUTATED SEZ6 WILD-TYPE
  CLUS_1            1             97
  CLUS_2            4             40
  CLUS_3            3             47
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEZ6 MUTATED        5      2      0      1      0
  SEZ6 WILD-TYPE     57     57     40     36     59
D457V5, multiclass
        clus
vv       SEZ6 MUTATED SEZ6 WILD-TYPE
  CLUS_1            5             57
  CLUS_2            2             57
  CLUS_3            0             40
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SEZ6 MUTATED        1      1      6
  SEZ6 WILD-TYPE    105     53     91
D457V6, multiclass
        clus
vv       SEZ6 MUTATED SEZ6 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            1             53
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SEZ6 MUTATED        8      2      0
  SEZ6 WILD-TYPE    115     93     71
D457V7, multiclass
        clus
vv       SEZ6 MUTATED SEZ6 WILD-TYPE
  CLUS_1            8            115
  CLUS_2            2             93
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SEZ6 MUTATED        8      2      0
  SEZ6 WILD-TYPE    149     61     69
D457V8, multiclass
        clus
vv       SEZ6 MUTATED SEZ6 WILD-TYPE
  CLUS_1            8            149
  CLUS_2            2             61
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SEZ6 MUTATED        1      2      2      1      0      2
  SEZ6 WILD-TYPE     32     17     57     38     16     43
D457V9, multiclass
        clus
vv       SEZ6 MUTATED SEZ6 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            2             17
  CLUS_3            2             57
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            2             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SEZ6 MUTATED        5      1      0      0      2      0
  SEZ6 WILD-TYPE     42     38     35     32     21     35
D457V10, multiclass
        clus
vv       SEZ6 MUTATED SEZ6 WILD-TYPE
  CLUS_1            5             42
  CLUS_2            1             38
  CLUS_3            0             35
  CLUS_4            0             32
  CLUS_5            2             21
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(458) Variable = XK MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XK MUTATED        1      3      1      0      0
  XK WILD-TYPE     78    123     26     43     12
D458V1, multiclass
        clus
vv       XK MUTATED XK WILD-TYPE
  CLUS_1          1           78
  CLUS_2          3          123
  CLUS_3          1           26
  CLUS_4          0           43
  CLUS_5          0           12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XK MUTATED        1      1      0      1
  XK WILD-TYPE     70     75     34     62
D458V2, multiclass
        clus
vv       XK MUTATED XK WILD-TYPE
  CLUS_1          1           70
  CLUS_2          1           75
  CLUS_3          0           34
  CLUS_4          1           62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XK MUTATED        0      3      0      0      1
  XK WILD-TYPE     16     59     51     65     54
D458V3, multiclass
        clus
vv       XK MUTATED XK WILD-TYPE
  CLUS_1          0           16
  CLUS_2          3           59
  CLUS_3          0           51
  CLUS_4          0           65
  CLUS_5          1           54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XK MUTATED        0      3      1      0
  XK WILD-TYPE     98     41     49     57
D458V4, multiclass
        clus
vv       XK MUTATED XK WILD-TYPE
  CLUS_1          0           98
  CLUS_2          3           41
  CLUS_3          1           49
  CLUS_4          0           57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XK MUTATED        2      1      0      1      1
  XK WILD-TYPE     60     58     40     36     58
D458V5, multiclass
        clus
vv       XK MUTATED XK WILD-TYPE
  CLUS_1          2           60
  CLUS_2          1           58
  CLUS_3          0           40
  CLUS_4          1           36
  CLUS_5          1           58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  XK MUTATED        1      1      3
  XK WILD-TYPE    105     53     94
D458V6, multiclass
        clus
vv       XK MUTATED XK WILD-TYPE
  CLUS_1          1          105
  CLUS_2          1           53
  CLUS_3          3           94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  XK MUTATED        3      1      1
  XK WILD-TYPE    120     94     70
D458V7, multiclass
        clus
vv       XK MUTATED XK WILD-TYPE
  CLUS_1          3          120
  CLUS_2          1           94
  CLUS_3          1           70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  XK MUTATED        2      2      1
  XK WILD-TYPE    155     61     68
D458V8, multiclass
        clus
vv       XK MUTATED XK WILD-TYPE
  CLUS_1          2          155
  CLUS_2          2           61
  CLUS_3          1           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XK MUTATED        1      0      1      0      0      1
  XK WILD-TYPE     32     19     58     39     16     44
D458V9, multiclass
        clus
vv       XK MUTATED XK WILD-TYPE
  CLUS_1          1           32
  CLUS_2          0           19
  CLUS_3          1           58
  CLUS_4          0           39
  CLUS_5          0           16
  CLUS_6          1           44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XK MUTATED        1      1      1      0      0      0
  XK WILD-TYPE     46     38     34     32     23     35
D458V10, multiclass
        clus
vv       XK MUTATED XK WILD-TYPE
  CLUS_1          1           46
  CLUS_2          1           38
  CLUS_3          1           34
  CLUS_4          0           32
  CLUS_5          0           23
  CLUS_6          0           35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(459) Variable = CNOT6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNOT6 MUTATED        0      6      1      0      0
  CNOT6 WILD-TYPE     79    120     26     43     12
D459V1, multiclass
        clus
vv       CNOT6 MUTATED CNOT6 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT6 MUTATED        0      1      2      2
  CNOT6 WILD-TYPE     71     75     32     61
D459V2, multiclass
        clus
vv       CNOT6 MUTATED CNOT6 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             1              75
  CLUS_3             2              32
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNOT6 MUTATED        1      3      2      0      1
  CNOT6 WILD-TYPE     15     59     49     65     54
D459V3, multiclass
        clus
vv       CNOT6 MUTATED CNOT6 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3              59
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT6 MUTATED        2      4      1      0
  CNOT6 WILD-TYPE     96     40     49     57
D459V4, multiclass
        clus
vv       CNOT6 MUTATED CNOT6 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             4              40
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNOT6 MUTATED        3      0      1      0      0
  CNOT6 WILD-TYPE     59     59     39     37     59
D459V5, multiclass
        clus
vv       CNOT6 MUTATED CNOT6 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNOT6 MUTATED        2      0      2
  CNOT6 WILD-TYPE    104     54     95
D459V6, multiclass
        clus
vv       CNOT6 MUTATED CNOT6 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             2              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNOT6 MUTATED        5      2      0
  CNOT6 WILD-TYPE    118     93     71
D459V7, multiclass
        clus
vv       CNOT6 MUTATED CNOT6 WILD-TYPE
  CLUS_1             5             118
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNOT6 MUTATED        5      2      0
  CNOT6 WILD-TYPE    152     61     69
D459V8, multiclass
        clus
vv       CNOT6 MUTATED CNOT6 WILD-TYPE
  CLUS_1             5             152
  CLUS_2             2              61
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNOT6 MUTATED        0      0      3      0      0      1
  CNOT6 WILD-TYPE     33     19     56     39     16     44
D459V9, multiclass
        clus
vv       CNOT6 MUTATED CNOT6 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              19
  CLUS_3             3              56
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNOT6 MUTATED        0      1      3      0      0      0
  CNOT6 WILD-TYPE     47     38     32     32     23     35
D459V10, multiclass
        clus
vv       CNOT6 MUTATED CNOT6 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(460) Variable = KCNH2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH2 MUTATED        1      8      1      1      2
  KCNH2 WILD-TYPE     78    118     26     42     10
D460V1, multiclass
        clus
vv       KCNH2 MUTATED KCNH2 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             8             118
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH2 MUTATED        2      5      1      1
  KCNH2 WILD-TYPE     69     71     33     62
D460V2, multiclass
        clus
vv       KCNH2 MUTATED KCNH2 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             5              71
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH2 MUTATED        1      6      1      0      2
  KCNH2 WILD-TYPE     15     56     50     65     53
D460V3, multiclass
        clus
vv       KCNH2 MUTATED KCNH2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             6              56
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH2 MUTATED        3      5      2      0
  KCNH2 WILD-TYPE     95     39     48     57
D460V4, multiclass
        clus
vv       KCNH2 MUTATED KCNH2 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             5              39
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH2 MUTATED        8      0      2      2      1
  KCNH2 WILD-TYPE     54     59     38     35     58
D460V5, multiclass
        clus
vv       KCNH2 MUTATED KCNH2 WILD-TYPE
  CLUS_1             8              54
  CLUS_2             0              59
  CLUS_3             2              38
  CLUS_4             2              35
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNH2 MUTATED        3      1      9
  KCNH2 WILD-TYPE    103     53     88
D460V6, multiclass
        clus
vv       KCNH2 MUTATED KCNH2 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             1              53
  CLUS_3             9              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNH2 MUTATED        9      1      3
  KCNH2 WILD-TYPE    114     94     68
D460V7, multiclass
        clus
vv       KCNH2 MUTATED KCNH2 WILD-TYPE
  CLUS_1             9             114
  CLUS_2             1              94
  CLUS_3             3              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNH2 MUTATED       11      1      1
  KCNH2 WILD-TYPE    146     62     68
D460V8, multiclass
        clus
vv       KCNH2 MUTATED KCNH2 WILD-TYPE
  CLUS_1            11             146
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNH2 MUTATED        1      2      2      4      0      0
  KCNH2 WILD-TYPE     32     17     57     35     16     45
D460V9, multiclass
        clus
vv       KCNH2 MUTATED KCNH2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              17
  CLUS_3             2              57
  CLUS_4             4              35
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNH2 MUTATED        5      0      2      0      1      1
  KCNH2 WILD-TYPE     42     39     33     32     22     34
D460V10, multiclass
        clus
vv       KCNH2 MUTATED KCNH2 WILD-TYPE
  CLUS_1             5              42
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(461) Variable = NLRC5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NLRC5 MUTATED        0     17      1      0      1
  NLRC5 WILD-TYPE     79    109     26     43     11
D461V1, multiclass
        clus
vv       NLRC5 MUTATED NLRC5 WILD-TYPE
  CLUS_1             0              79
  CLUS_2            17             109
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRC5 MUTATED        0     10      1      2
  NLRC5 WILD-TYPE     71     66     33     61
D461V2, multiclass
        clus
vv       NLRC5 MUTATED NLRC5 WILD-TYPE
  CLUS_1             0              71
  CLUS_2            10              66
  CLUS_3             1              33
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NLRC5 MUTATED        1     10      4      0      3
  NLRC5 WILD-TYPE     15     52     47     65     52
D461V3, multiclass
        clus
vv       NLRC5 MUTATED NLRC5 WILD-TYPE
  CLUS_1             1              15
  CLUS_2            10              52
  CLUS_3             4              47
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRC5 MUTATED        3      8      6      1
  NLRC5 WILD-TYPE     95     36     44     56
D461V4, multiclass
        clus
vv       NLRC5 MUTATED NLRC5 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             8              36
  CLUS_3             6              44
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NLRC5 MUTATED       10      1      1      5      0
  NLRC5 WILD-TYPE     52     58     39     32     59
D461V5, multiclass
        clus
vv       NLRC5 MUTATED NLRC5 WILD-TYPE
  CLUS_1            10              52
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             5              32
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRC5 MUTATED        4      1     12
  NLRC5 WILD-TYPE    102     53     85
D461V6, multiclass
        clus
vv       NLRC5 MUTATED NLRC5 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             1              53
  CLUS_3            12              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRC5 MUTATED       14      3      2
  NLRC5 WILD-TYPE    109     92     69
D461V7, multiclass
        clus
vv       NLRC5 MUTATED NLRC5 WILD-TYPE
  CLUS_1            14             109
  CLUS_2             3              92
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRC5 MUTATED       17      2      0
  NLRC5 WILD-TYPE    140     61     69
D461V8, multiclass
        clus
vv       NLRC5 MUTATED NLRC5 WILD-TYPE
  CLUS_1            17             140
  CLUS_2             2              61
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NLRC5 MUTATED        0      3      5      5      0      0
  NLRC5 WILD-TYPE     33     16     54     34     16     45
D461V9, multiclass
        clus
vv       NLRC5 MUTATED NLRC5 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             3              16
  CLUS_3             5              54
  CLUS_4             5              34
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NLRC5 MUTATED        4      0      3      3      3      0
  NLRC5 WILD-TYPE     43     39     32     29     20     35
D461V10, multiclass
        clus
vv       NLRC5 MUTATED NLRC5 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             0              39
  CLUS_3             3              32
  CLUS_4             3              29
  CLUS_5             3              20
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(462) Variable = EPHA5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA5 MUTATED        6     13      3      1      3
  EPHA5 WILD-TYPE     73    113     24     42      9
D462V1, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1             6              73
  CLUS_2            13             113
  CLUS_3             3              24
  CLUS_4             1              42
  CLUS_5             3               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA5 MUTATED        5     14      1      2
  EPHA5 WILD-TYPE     66     62     33     61
D462V2, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1             5              66
  CLUS_2            14              62
  CLUS_3             1              33
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA5 MUTATED        4      7      4      0      5
  EPHA5 WILD-TYPE     12     55     47     65     50
D462V3, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1             4              12
  CLUS_2             7              55
  CLUS_3             4              47
  CLUS_4             0              65
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA5 MUTATED        7      6      6      1
  EPHA5 WILD-TYPE     91     38     44     56
D462V4, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1             7              91
  CLUS_2             6              38
  CLUS_3             6              44
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA5 MUTATED       11      1      2      4      3
  EPHA5 WILD-TYPE     51     58     38     33     56
D462V5, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1            11              51
  CLUS_2             1              58
  CLUS_3             2              38
  CLUS_4             4              33
  CLUS_5             3              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA5 MUTATED        4      2     15
  EPHA5 WILD-TYPE    102     52     82
D462V6, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             2              52
  CLUS_3            15              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA5 MUTATED       17      3      7
  EPHA5 WILD-TYPE    106     92     64
D462V7, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1            17             106
  CLUS_2             3              92
  CLUS_3             7              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA5 MUTATED       18      1      8
  EPHA5 WILD-TYPE    139     62     61
D462V8, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1            18             139
  CLUS_2             1              62
  CLUS_3             8              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPHA5 MUTATED        3      4      8      4      0      0
  EPHA5 WILD-TYPE     30     15     51     35     16     45
D462V9, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             4              15
  CLUS_3             8              51
  CLUS_4             4              35
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPHA5 MUTATED        7      0      4      5      3      0
  EPHA5 WILD-TYPE     40     39     31     27     20     35
D462V10, multiclass
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  CLUS_1             7              40
  CLUS_2             0              39
  CLUS_3             4              31
  CLUS_4             5              27
  CLUS_5             3              20
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(463) Variable = LRRC43 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRC43 MUTATED        0      9      0      0      0
  LRRC43 WILD-TYPE     79    117     27     43     12
D463V1, multiclass
        clus
vv       LRRC43 MUTATED LRRC43 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              9              117
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC43 MUTATED        0      6      1      1
  LRRC43 WILD-TYPE     71     70     33     62
D463V2, multiclass
        clus
vv       LRRC43 MUTATED LRRC43 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              6               70
  CLUS_3              1               33
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRC43 MUTATED        0      3      2      0      2
  LRRC43 WILD-TYPE     16     59     49     65     53
D463V3, multiclass
        clus
vv       LRRC43 MUTATED LRRC43 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              3               59
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC43 MUTATED        2      4      1      0
  LRRC43 WILD-TYPE     96     40     49     57
D463V4, multiclass
        clus
vv       LRRC43 MUTATED LRRC43 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              4               40
  CLUS_3              1               49
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRC43 MUTATED        6      0      3      1      0
  LRRC43 WILD-TYPE     56     59     37     36     59
D463V5, multiclass
        clus
vv       LRRC43 MUTATED LRRC43 WILD-TYPE
  CLUS_1              6               56
  CLUS_2              0               59
  CLUS_3              3               37
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC43 MUTATED        4      0      6
  LRRC43 WILD-TYPE    102     54     91
D463V6, multiclass
        clus
vv       LRRC43 MUTATED LRRC43 WILD-TYPE
  CLUS_1              4              102
  CLUS_2              0               54
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC43 MUTATED        9      1      0
  LRRC43 WILD-TYPE    114     94     71
D463V7, multiclass
        clus
vv       LRRC43 MUTATED LRRC43 WILD-TYPE
  CLUS_1              9              114
  CLUS_2              1               94
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC43 MUTATED        9      0      1
  LRRC43 WILD-TYPE    148     63     68
D463V8, multiclass
        clus
vv       LRRC43 MUTATED LRRC43 WILD-TYPE
  CLUS_1              9              148
  CLUS_2              0               63
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRRC43 MUTATED        1      0      3      4      0      0
  LRRC43 WILD-TYPE     32     19     56     35     16     45
D463V9, multiclass
        clus
vv       LRRC43 MUTATED LRRC43 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               19
  CLUS_3              3               56
  CLUS_4              4               35
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRRC43 MUTATED        3      0      2      2      0      1
  LRRC43 WILD-TYPE     44     39     33     30     23     34
D463V10, multiclass
        clus
vv       LRRC43 MUTATED LRRC43 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              2               30
  CLUS_5              0               23
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(464) Variable = PTPN4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN4 MUTATED        0      6      0      1      1
  PTPN4 WILD-TYPE     79    120     27     42     11
D464V1, multiclass
        clus
vv       PTPN4 MUTATED PTPN4 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN4 MUTATED        0      4      1      0
  PTPN4 WILD-TYPE     71     72     33     63
D464V2, multiclass
        clus
vv       PTPN4 MUTATED PTPN4 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             4              72
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN4 MUTATED        0      3      0      1      3
  PTPN4 WILD-TYPE     16     59     51     64     52
D464V3, multiclass
        clus
vv       PTPN4 MUTATED PTPN4 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              59
  CLUS_3             0              51
  CLUS_4             1              64
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN4 MUTATED        1      4      1      1
  PTPN4 WILD-TYPE     97     40     49     56
D464V4, multiclass
        clus
vv       PTPN4 MUTATED PTPN4 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             4              40
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN4 MUTATED        4      1      0      2      0
  PTPN4 WILD-TYPE     58     58     40     35     59
D464V5, multiclass
        clus
vv       PTPN4 MUTATED PTPN4 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPN4 MUTATED        1      1      5
  PTPN4 WILD-TYPE    105     53     92
D464V6, multiclass
        clus
vv       PTPN4 MUTATED PTPN4 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             1              53
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPN4 MUTATED        8      1      0
  PTPN4 WILD-TYPE    115     94     71
D464V7, multiclass
        clus
vv       PTPN4 MUTATED PTPN4 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPN4 MUTATED        9      0      0
  PTPN4 WILD-TYPE    148     63     69
D464V8, multiclass
        clus
vv       PTPN4 MUTATED PTPN4 WILD-TYPE
  CLUS_1             9             148
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTPN4 MUTATED        3      0      0      2      0      0
  PTPN4 WILD-TYPE     30     19     59     37     16     45
D464V9, multiclass
        clus
vv       PTPN4 MUTATED PTPN4 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              19
  CLUS_3             0              59
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTPN4 MUTATED        2      0      0      1      2      0
  PTPN4 WILD-TYPE     45     39     35     31     21     35
D464V10, multiclass
        clus
vv       PTPN4 MUTATED PTPN4 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             0              35
  CLUS_4             1              31
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(465) Variable = STK38 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK38 MUTATED        0      5      0      1      0
  STK38 WILD-TYPE     79    121     27     42     12
D465V1, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             5             121
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK38 MUTATED        0      4      0      1
  STK38 WILD-TYPE     71     72     34     62
D465V2, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             4              72
  CLUS_3             0              34
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK38 MUTATED        1      3      2      0      0
  STK38 WILD-TYPE     15     59     49     65     55
D465V3, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3              59
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             0              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK38 MUTATED        1      5      0      0
  STK38 WILD-TYPE     97     39     50     57
D465V4, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             5              39
  CLUS_3             0              50
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK38 MUTATED        4      0      0      2      0
  STK38 WILD-TYPE     58     59     40     35     59
D465V5, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK38 MUTATED        1      0      5
  STK38 WILD-TYPE    105     54     92
D465V6, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK38 MUTATED        6      0      0
  STK38 WILD-TYPE    117     95     71
D465V7, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK38 MUTATED        6      0      0
  STK38 WILD-TYPE    151     63     69
D465V8, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STK38 MUTATED        1      1      2      1      0      0
  STK38 WILD-TYPE     32     18     57     38     16     45
D465V9, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             2              57
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STK38 MUTATED        2      0      2      1      0      0
  STK38 WILD-TYPE     45     39     33     31     23     35
D465V10, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(466) Variable = OR51A7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR51A7 MUTATED        2      3      1      0      0
  OR51A7 WILD-TYPE     77    123     26     43     12
D466V1, multiclass
        clus
vv       OR51A7 MUTATED OR51A7 WILD-TYPE
  CLUS_1              2               77
  CLUS_2              3              123
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR51A7 MUTATED        1      1      1      3
  OR51A7 WILD-TYPE     70     75     33     60
D466V2, multiclass
        clus
vv       OR51A7 MUTATED OR51A7 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              1               75
  CLUS_3              1               33
  CLUS_4              3               60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR51A7 MUTATED        1      0      2      3      0
  OR51A7 WILD-TYPE     15     62     49     62     55
D466V3, multiclass
        clus
vv       OR51A7 MUTATED OR51A7 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              0               62
  CLUS_3              2               49
  CLUS_4              3               62
  CLUS_5              0               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR51A7 MUTATED        4      0      1      1
  OR51A7 WILD-TYPE     94     44     49     56
D466V4, multiclass
        clus
vv       OR51A7 MUTATED OR51A7 WILD-TYPE
  CLUS_1              4               94
  CLUS_2              0               44
  CLUS_3              1               49
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR51A7 MUTATED        1      1      0      2      2
  OR51A7 WILD-TYPE     61     58     40     35     57
D466V5, multiclass
        clus
vv       OR51A7 MUTATED OR51A7 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              2               35
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR51A7 MUTATED        4      1      1
  OR51A7 WILD-TYPE    102     53     96
D466V6, multiclass
        clus
vv       OR51A7 MUTATED OR51A7 WILD-TYPE
  CLUS_1              4              102
  CLUS_2              1               53
  CLUS_3              1               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR51A7 MUTATED        3      2      1
  OR51A7 WILD-TYPE    120     93     70
D466V7, multiclass
        clus
vv       OR51A7 MUTATED OR51A7 WILD-TYPE
  CLUS_1              3              120
  CLUS_2              2               93
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR51A7 MUTATED        3      1      2
  OR51A7 WILD-TYPE    154     62     67
D466V8, multiclass
        clus
vv       OR51A7 MUTATED OR51A7 WILD-TYPE
  CLUS_1              3              154
  CLUS_2              1               62
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR51A7 MUTATED        1      1      2      1      0      1
  OR51A7 WILD-TYPE     32     18     57     38     16     44
D466V9, multiclass
        clus
vv       OR51A7 MUTATED OR51A7 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR51A7 MUTATED        0      2      2      0      1      1
  OR51A7 WILD-TYPE     47     37     33     32     22     34
D466V10, multiclass
        clus
vv       OR51A7 MUTATED OR51A7 WILD-TYPE
  CLUS_1              0               47
  CLUS_2              2               37
  CLUS_3              2               33
  CLUS_4              0               32
  CLUS_5              1               22
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(467) Variable = TUBE1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TUBE1 MUTATED        0      6      0      1      0
  TUBE1 WILD-TYPE     79    120     27     42     12
D467V1, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBE1 MUTATED        1      4      0      0
  TUBE1 WILD-TYPE     70     72     34     63
D467V2, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             4              72
  CLUS_3             0              34
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TUBE1 MUTATED        0      4      0      0      3
  TUBE1 WILD-TYPE     16     58     51     65     52
D467V3, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             4              58
  CLUS_3             0              51
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBE1 MUTATED        0      4      2      1
  TUBE1 WILD-TYPE     98     40     48     56
D467V4, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             4              40
  CLUS_3             2              48
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TUBE1 MUTATED        4      0      0      0      1
  TUBE1 WILD-TYPE     58     59     40     37     58
D467V5, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             0              37
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TUBE1 MUTATED        2      0      3
  TUBE1 WILD-TYPE    104     54     94
D467V6, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TUBE1 MUTATED        5      1      1
  TUBE1 WILD-TYPE    118     94     70
D467V7, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             5             118
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TUBE1 MUTATED        6      0      1
  TUBE1 WILD-TYPE    151     63     68
D467V8, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TUBE1 MUTATED        2      0      0      2      1      0
  TUBE1 WILD-TYPE     31     19     59     37     15     45
D467V9, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              19
  CLUS_3             0              59
  CLUS_4             2              37
  CLUS_5             1              15
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TUBE1 MUTATED        2      0      0      1      1      1
  TUBE1 WILD-TYPE     45     39     35     31     22     34
D467V10, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             0              35
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(468) Variable = RINT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RINT1 MUTATED        0      3      2      0      0
  RINT1 WILD-TYPE     79    123     25     43     12
D468V1, multiclass
        clus
vv       RINT1 MUTATED RINT1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             3             123
  CLUS_3             2              25
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RINT1 MUTATED        0      4      1      0
  RINT1 WILD-TYPE     71     72     33     63
D468V2, multiclass
        clus
vv       RINT1 MUTATED RINT1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             4              72
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RINT1 MUTATED        1      0      1      0      2
  RINT1 WILD-TYPE     15     62     50     65     53
D468V3, multiclass
        clus
vv       RINT1 MUTATED RINT1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             0              62
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RINT1 MUTATED        1      3      0      0
  RINT1 WILD-TYPE     97     41     50     57
D468V4, multiclass
        clus
vv       RINT1 MUTATED RINT1 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             3              41
  CLUS_3             0              50
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RINT1 MUTATED        2      0      1      2      0
  RINT1 WILD-TYPE     60     59     39     35     59
D468V5, multiclass
        clus
vv       RINT1 MUTATED RINT1 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RINT1 MUTATED        0      0      5
  RINT1 WILD-TYPE    106     54     92
D468V6, multiclass
        clus
vv       RINT1 MUTATED RINT1 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              54
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RINT1 MUTATED        5      0      0
  RINT1 WILD-TYPE    118     95     71
D468V7, multiclass
        clus
vv       RINT1 MUTATED RINT1 WILD-TYPE
  CLUS_1             5             118
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RINT1 MUTATED        5      0      0
  RINT1 WILD-TYPE    152     63     69
D468V8, multiclass
        clus
vv       RINT1 MUTATED RINT1 WILD-TYPE
  CLUS_1             5             152
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RINT1 MUTATED        1      1      2      1      0      0
  RINT1 WILD-TYPE     32     18     57     38     16     45
D468V9, multiclass
        clus
vv       RINT1 MUTATED RINT1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             2              57
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RINT1 MUTATED        2      0      1      1      1      0
  RINT1 WILD-TYPE     45     39     34     31     22     35
D468V10, multiclass
        clus
vv       RINT1 MUTATED RINT1 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(469) Variable = UPK2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UPK2 MUTATED        0      3      0      0      0
  UPK2 WILD-TYPE     79    123     27     43     12
D469V1, multiclass
        clus
vv       UPK2 MUTATED UPK2 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            3            123
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPK2 MUTATED        0      1      1      0
  UPK2 WILD-TYPE     71     75     33     63
D469V2, multiclass
[1] "Remove cluster labels:" "UPK2 MUTATED"          
clus
  UPK2 MUTATED UPK2 WILD-TYPE 
             2            242 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6453 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-7707     TCGA-BR-7715     TCGA-BR-7716     TCGA-BR-7717 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-7722     TCGA-BR-7723     TCGA-BR-7851     TCGA-BR-7901 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959     TCGA-BR-8058 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8059     TCGA-BR-8077     TCGA-BR-8078     TCGA-BR-8080 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289     TCGA-BR-8291 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8297     TCGA-BR-8361 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365     TCGA-BR-8366 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8367     TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373     TCGA-BR-8380 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8484     TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8487 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8588     TCGA-BR-8589     TCGA-BR-8590     TCGA-BR-8591 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677     TCGA-BR-8678 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682     TCGA-BR-8683 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8686     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A44U     TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4CR     TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J2 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4J4     TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4PD     TCGA-BR-A4PE     TCGA-BR-A4PF     TCGA-BR-A4QI 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-5804     TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-8526     TCGA-CD-8527     TCGA-CD-8528     TCGA-CD-8529 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8534 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-A489     TCGA-CD-A48A     TCGA-CD-A48C     TCGA-CD-A4MG 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4437 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YX     TCGA-D7-A4YY     TCGA-D7-A4Z0 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-EQ-5647     TCGA-EQ-8122     TCGA-EQ-A4SO     TCGA-F1-6177 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-F1-6874     TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7735 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211     TCGA-FP-8631 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-FP-A4BE     TCGA-FP-A4BF     TCGA-HF-7132     TCGA-HF-7133 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HF-7136     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-8249     TCGA-HU-8602     TCGA-HU-8604     TCGA-HU-8608 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4G3     TCGA-HU-A4G6 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4G8     TCGA-HU-A4G9     TCGA-HU-A4GC     TCGA-HU-A4GD 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GN     TCGA-HU-A4GP 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4GQ     TCGA-HU-A4GT     TCGA-HU-A4GU     TCGA-HU-A4GX 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4GY     TCGA-HU-A4H0     TCGA-HU-A4H2     TCGA-HU-A4H3 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6     TCGA-HU-A4H8 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4HD     TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-IN-8663     TCGA-IP-7968 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UPK2 MUTATED        0      2      1      0      0
  UPK2 WILD-TYPE     16     60     50     65     55
D469V3, multiclass
        clus
vv       UPK2 MUTATED UPK2 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            2             60
  CLUS_3            1             50
  CLUS_4            0             65
  CLUS_5            0             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPK2 MUTATED        1      1      1      0
  UPK2 WILD-TYPE     97     43     49     57
D469V4, multiclass
        clus
vv       UPK2 MUTATED UPK2 WILD-TYPE
  CLUS_1            1             97
  CLUS_2            1             43
  CLUS_3            1             49
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UPK2 MUTATED        1      0      0      1      0
  UPK2 WILD-TYPE     61     59     40     36     59
D469V5, multiclass
[1] "Remove cluster labels:" "UPK2 MUTATED"          
clus
  UPK2 MUTATED UPK2 WILD-TYPE 
             2            255 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4187     TCGA-BR-4191 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-4201     TCGA-BR-4253     TCGA-BR-4255     TCGA-BR-4256 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-4257     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-4292     TCGA-BR-4294     TCGA-BR-4357     TCGA-BR-4361 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-4362     TCGA-BR-4363     TCGA-BR-4366     TCGA-BR-4368 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-4369     TCGA-BR-4370     TCGA-BR-4371     TCGA-BR-6452 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6453     TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6565     TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6707     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715     TCGA-BR-7716 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723     TCGA-BR-7851 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8077     TCGA-BR-8078 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8297     TCGA-BR-8361     TCGA-BR-8363 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8364     TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8371     TCGA-BR-8372 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381     TCGA-BR-8382 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8484     TCGA-BR-8485 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8589 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8677 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8686     TCGA-BR-8687     TCGA-BR-A44T 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CR     TCGA-BR-A4CS 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY     TCGA-BR-A4IZ 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4J1     TCGA-BR-A4J2     TCGA-BR-A4J4     TCGA-BR-A4J6 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4PE 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4PF     TCGA-BR-A4QI     TCGA-CD-5798     TCGA-CD-5799 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5803     TCGA-CD-5804 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8526     TCGA-CD-8528 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-8534     TCGA-CD-8535     TCGA-CD-8536     TCGA-CD-A486 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-A487     TCGA-CD-A489     TCGA-CD-A48C     TCGA-CD-A4MG 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4301 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-4442     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4466     TCGA-CG-4469     TCGA-CG-4474 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-4475     TCGA-CG-4476     TCGA-CG-4477     TCGA-CG-5717 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5726 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-8572     TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8575 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-8576     TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4YX     TCGA-D7-A4YY 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-A4Z0     TCGA-EQ-8122     TCGA-EQ-A4SO     TCGA-F1-6177 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-F1-6874     TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7735 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211     TCGA-FP-8631 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-FP-A4BE     TCGA-HF-7132     TCGA-HF-7133     TCGA-HF-7136 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-8602     TCGA-HU-8604     TCGA-HU-8608     TCGA-HU-8610 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4G2     TCGA-HU-A4G3     TCGA-HU-A4G6     TCGA-HU-A4G8 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4G9     TCGA-HU-A4GC     TCGA-HU-A4GF     TCGA-HU-A4GH 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GT     TCGA-HU-A4GU 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H0     TCGA-HU-A4H2 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4H8     TCGA-HU-A4HD     TCGA-IN-7806     TCGA-IN-7808 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-IN-8462     TCGA-IN-8663     TCGA-IP-7968 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UPK2 MUTATED        0      0      2
  UPK2 WILD-TYPE    106     54     95
D469V6, multiclass
[1] "Remove cluster labels:" "UPK2 MUTATED"          
clus
  UPK2 MUTATED UPK2 WILD-TYPE 
             2            255 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4187     TCGA-BR-4191 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-4201     TCGA-BR-4253     TCGA-BR-4255     TCGA-BR-4256 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-4257     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-4292     TCGA-BR-4294     TCGA-BR-4357     TCGA-BR-4361 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-4362     TCGA-BR-4363     TCGA-BR-4366     TCGA-BR-4368 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-4369     TCGA-BR-4370     TCGA-BR-4371     TCGA-BR-6452 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6453     TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6565     TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6707     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715     TCGA-BR-7716 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723     TCGA-BR-7851 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8077     TCGA-BR-8078 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8297     TCGA-BR-8361     TCGA-BR-8363 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8364     TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8371     TCGA-BR-8372 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381     TCGA-BR-8382 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8484     TCGA-BR-8485 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8589 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8677 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8686     TCGA-BR-8687     TCGA-BR-A44T 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CR     TCGA-BR-A4CS 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY     TCGA-BR-A4IZ 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4J1     TCGA-BR-A4J2     TCGA-BR-A4J4     TCGA-BR-A4J6 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4PE 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4PF     TCGA-BR-A4QI     TCGA-CD-5798     TCGA-CD-5799 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5803     TCGA-CD-5804 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8526     TCGA-CD-8528 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-8534     TCGA-CD-8535     TCGA-CD-8536     TCGA-CD-A486 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-A487     TCGA-CD-A489     TCGA-CD-A48C     TCGA-CD-A4MG 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4301 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-4442     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-4462     TCGA-CG-4466     TCGA-CG-4469     TCGA-CG-4474 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-4475     TCGA-CG-4476     TCGA-CG-4477     TCGA-CG-5717 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5726 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-8572     TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8575 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-8576     TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4YX     TCGA-D7-A4YY 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-A4Z0     TCGA-EQ-8122     TCGA-EQ-A4SO     TCGA-F1-6177 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-F1-6874     TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7735 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211     TCGA-FP-8631 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-FP-A4BE     TCGA-HF-7132     TCGA-HF-7133     TCGA-HF-7136 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-8602     TCGA-HU-8604     TCGA-HU-8608     TCGA-HU-8610 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4G2     TCGA-HU-A4G3     TCGA-HU-A4G6     TCGA-HU-A4G8 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4G9     TCGA-HU-A4GC     TCGA-HU-A4GF     TCGA-HU-A4GH 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GT     TCGA-HU-A4GU 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H0     TCGA-HU-A4H2 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4H8     TCGA-HU-A4HD     TCGA-IN-7806     TCGA-IN-7808 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-IN-8462     TCGA-IN-8663     TCGA-IP-7968 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UPK2 MUTATED        3      0      0
  UPK2 WILD-TYPE    120     95     71
D469V7, multiclass
        clus
vv       UPK2 MUTATED UPK2 WILD-TYPE
  CLUS_1            3            120
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UPK2 MUTATED        3      0      0
  UPK2 WILD-TYPE    154     63     69
D469V8, multiclass
        clus
vv       UPK2 MUTATED UPK2 WILD-TYPE
  CLUS_1            3            154
  CLUS_2            0             63
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UPK2 MUTATED        0      0      1      0      0      0
  UPK2 WILD-TYPE     33     19     58     39     16     45
D469V9, multiclass
[1] "Remove cluster labels:" "UPK2 MUTATED"          
clus
  UPK2 MUTATED UPK2 WILD-TYPE 
             1            210 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6453 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-7707     TCGA-BR-7715     TCGA-BR-7717     TCGA-BR-7723 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-7959     TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8077 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8078     TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8289     TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8296 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8297     TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373     TCGA-BR-8380 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8677     TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8682     TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A44T     TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4CR     TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J6 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-5804     TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-8526     TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8534     TCGA-CD-8535 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-A48C     TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-4437     TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5717 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5726 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-8570     TCGA-D7-8572     TCGA-D7-8574     TCGA-D7-8575 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-8576     TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4YY     TCGA-D7-A4Z0 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-EQ-5647     TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-FP-7998     TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-FP-8211     TCGA-FP-8631     TCGA-FP-A4BE     TCGA-HF-7132 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HF-7136     TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-8608     TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4GD     TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GN 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4GQ     TCGA-HU-A4GT     TCGA-HU-A4GX     TCGA-HU-A4GY 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4H2     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4H8     TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-IN-8663     TCGA-IP-7968 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UPK2 MUTATED        1      0      0      0      0      0
  UPK2 WILD-TYPE     46     39     35     32     23     35
D469V10, multiclass
[1] "Remove cluster labels:" "UPK2 MUTATED"          
clus
  UPK2 MUTATED UPK2 WILD-TYPE 
             1            210 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6453 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-7707     TCGA-BR-7715     TCGA-BR-7717     TCGA-BR-7723 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-7959     TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8077 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8078     TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8289     TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8296 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8297     TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373     TCGA-BR-8380 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8677     TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8682     TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A44T     TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4CR     TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J6 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-5804     TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-8526     TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8534     TCGA-CD-8535 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-A48C     TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-4437     TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5717 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5726 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-8570     TCGA-D7-8572     TCGA-D7-8574     TCGA-D7-8575 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-8576     TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4YY     TCGA-D7-A4Z0 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-EQ-5647     TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-FP-7998     TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-FP-8211     TCGA-FP-8631     TCGA-FP-A4BE     TCGA-HF-7132 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HF-7136     TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-8608     TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4GD     TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GN 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4GQ     TCGA-HU-A4GT     TCGA-HU-A4GX     TCGA-HU-A4GY 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4H2     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4H8     TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-IN-8663     TCGA-IP-7968 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 

Clustering(470) Variable = TIGD7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TIGD7 MUTATED        0      7      1      0      0
  TIGD7 WILD-TYPE     79    119     26     43     12
D470V1, multiclass
        clus
vv       TIGD7 MUTATED TIGD7 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             7             119
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIGD7 MUTATED        0      7      1      0
  TIGD7 WILD-TYPE     71     69     33     63
D470V2, multiclass
        clus
vv       TIGD7 MUTATED TIGD7 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             7              69
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TIGD7 MUTATED        0      2      1      0      3
  TIGD7 WILD-TYPE     16     60     50     65     52
D470V3, multiclass
        clus
vv       TIGD7 MUTATED TIGD7 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIGD7 MUTATED        0      4      2      0
  TIGD7 WILD-TYPE     98     40     48     57
D470V4, multiclass
        clus
vv       TIGD7 MUTATED TIGD7 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             4              40
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TIGD7 MUTATED        5      0      0      3      0
  TIGD7 WILD-TYPE     57     59     40     34     59
D470V5, multiclass
        clus
vv       TIGD7 MUTATED TIGD7 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIGD7 MUTATED        0      1      7
  TIGD7 WILD-TYPE    106     53     90
D470V6, multiclass
        clus
vv       TIGD7 MUTATED TIGD7 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             1              53
  CLUS_3             7              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIGD7 MUTATED        7      1      0
  TIGD7 WILD-TYPE    116     94     71
D470V7, multiclass
        clus
vv       TIGD7 MUTATED TIGD7 WILD-TYPE
  CLUS_1             7             116
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIGD7 MUTATED        8      0      0
  TIGD7 WILD-TYPE    149     63     69
D470V8, multiclass
        clus
vv       TIGD7 MUTATED TIGD7 WILD-TYPE
  CLUS_1             8             149
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TIGD7 MUTATED        1      1      3      3      0      0
  TIGD7 WILD-TYPE     32     18     56     36     16     45
D470V9, multiclass
        clus
vv       TIGD7 MUTATED TIGD7 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             3              56
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TIGD7 MUTATED        2      0      3      2      1      0
  TIGD7 WILD-TYPE     45     39     32     30     22     35
D470V10, multiclass
        clus
vv       TIGD7 MUTATED TIGD7 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             3              32
  CLUS_4             2              30
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(471) Variable = TERF2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TERF2 MUTATED        0      9      2      0      1
  TERF2 WILD-TYPE     79    117     25     43     11
D471V1, multiclass
        clus
vv       TERF2 MUTATED TERF2 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             9             117
  CLUS_3             2              25
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TERF2 MUTATED        0      4      1      4
  TERF2 WILD-TYPE     71     72     33     59
D471V2, multiclass
        clus
vv       TERF2 MUTATED TERF2 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             4              72
  CLUS_3             1              33
  CLUS_4             4              59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TERF2 MUTATED        1      3      2      2      4
  TERF2 WILD-TYPE     15     59     49     63     51
D471V3, multiclass
        clus
vv       TERF2 MUTATED TERF2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3              59
  CLUS_3             2              49
  CLUS_4             2              63
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TERF2 MUTATED        2      7      1      2
  TERF2 WILD-TYPE     96     37     49     55
D471V4, multiclass
        clus
vv       TERF2 MUTATED TERF2 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             7              37
  CLUS_3             1              49
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TERF2 MUTATED        6      1      1      1      0
  TERF2 WILD-TYPE     56     58     39     36     59
D471V5, multiclass
        clus
vv       TERF2 MUTATED TERF2 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TERF2 MUTATED        3      1      5
  TERF2 WILD-TYPE    103     53     92
D471V6, multiclass
        clus
vv       TERF2 MUTATED TERF2 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             1              53
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TERF2 MUTATED        8      2      2
  TERF2 WILD-TYPE    115     93     69
D471V7, multiclass
        clus
vv       TERF2 MUTATED TERF2 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             2              93
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TERF2 MUTATED        9      2      1
  TERF2 WILD-TYPE    148     61     68
D471V8, multiclass
        clus
vv       TERF2 MUTATED TERF2 WILD-TYPE
  CLUS_1             9             148
  CLUS_2             2              61
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TERF2 MUTATED        0      1      3      1      1      1
  TERF2 WILD-TYPE     33     18     56     38     15     44
D471V9, multiclass
        clus
vv       TERF2 MUTATED TERF2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              18
  CLUS_3             3              56
  CLUS_4             1              38
  CLUS_5             1              15
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TERF2 MUTATED        2      1      3      0      0      1
  TERF2 WILD-TYPE     45     38     32     32     23     34
D471V10, multiclass
        clus
vv       TERF2 MUTATED TERF2 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(472) Variable = ARHGEF17 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGEF17 MUTATED        1     15      0      0      0
  ARHGEF17 WILD-TYPE     78    111     27     43     12
D472V1, multiclass
        clus
vv       ARHGEF17 MUTATED ARHGEF17 WILD-TYPE
  CLUS_1                1                 78
  CLUS_2               15                111
  CLUS_3                0                 27
  CLUS_4                0                 43
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF17 MUTATED        1      8      3      3
  ARHGEF17 WILD-TYPE     70     68     31     60
D472V2, multiclass
        clus
vv       ARHGEF17 MUTATED ARHGEF17 WILD-TYPE
  CLUS_1                1                 70
  CLUS_2                8                 68
  CLUS_3                3                 31
  CLUS_4                3                 60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGEF17 MUTATED        1      4      2      1      3
  ARHGEF17 WILD-TYPE     15     58     49     64     52
D472V3, multiclass
        clus
vv       ARHGEF17 MUTATED ARHGEF17 WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                4                 58
  CLUS_3                2                 49
  CLUS_4                1                 64
  CLUS_5                3                 52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF17 MUTATED        5      4      1      1
  ARHGEF17 WILD-TYPE     93     40     49     56
D472V4, multiclass
        clus
vv       ARHGEF17 MUTATED ARHGEF17 WILD-TYPE
  CLUS_1                5                 93
  CLUS_2                4                 40
  CLUS_3                1                 49
  CLUS_4                1                 56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGEF17 MUTATED       10      2      1      0      1
  ARHGEF17 WILD-TYPE     52     57     39     37     58
D472V5, multiclass
        clus
vv       ARHGEF17 MUTATED ARHGEF17 WILD-TYPE
  CLUS_1               10                 52
  CLUS_2                2                 57
  CLUS_3                1                 39
  CLUS_4                0                 37
  CLUS_5                1                 58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGEF17 MUTATED        3      2      9
  ARHGEF17 WILD-TYPE    103     52     88
D472V6, multiclass
        clus
vv       ARHGEF17 MUTATED ARHGEF17 WILD-TYPE
  CLUS_1                3                103
  CLUS_2                2                 52
  CLUS_3                9                 88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGEF17 MUTATED       11      3      3
  ARHGEF17 WILD-TYPE    112     92     68
D472V7, multiclass
        clus
vv       ARHGEF17 MUTATED ARHGEF17 WILD-TYPE
  CLUS_1               11                112
  CLUS_2                3                 92
  CLUS_3                3                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGEF17 MUTATED       13      2      2
  ARHGEF17 WILD-TYPE    144     61     67
D472V8, multiclass
        clus
vv       ARHGEF17 MUTATED ARHGEF17 WILD-TYPE
  CLUS_1               13                144
  CLUS_2                2                 61
  CLUS_3                2                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARHGEF17 MUTATED        3      0      2      6      1      2
  ARHGEF17 WILD-TYPE     30     19     57     33     15     43
D472V9, multiclass
        clus
vv       ARHGEF17 MUTATED ARHGEF17 WILD-TYPE
  CLUS_1                3                 30
  CLUS_2                0                 19
  CLUS_3                2                 57
  CLUS_4                6                 33
  CLUS_5                1                 15
  CLUS_6                2                 43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARHGEF17 MUTATED        5      2      1      3      3      0
  ARHGEF17 WILD-TYPE     42     37     34     29     20     35
D472V10, multiclass
        clus
vv       ARHGEF17 MUTATED ARHGEF17 WILD-TYPE
  CLUS_1                5                 42
  CLUS_2                2                 37
  CLUS_3                1                 34
  CLUS_4                3                 29
  CLUS_5                3                 20
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(473) Variable = FLG MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FLG MUTATED       17     33      5      6      0
  FLG WILD-TYPE     62     93     22     37     12
D473V1, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          17            62
  CLUS_2          33            93
  CLUS_3           5            22
  CLUS_4           6            37
  CLUS_5           0            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLG MUTATED       15     23      4      9
  FLG WILD-TYPE     56     53     30     54
D473V2, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          15            56
  CLUS_2          23            53
  CLUS_3           4            30
  CLUS_4           9            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FLG MUTATED        6     16      8      8     14
  FLG WILD-TYPE     10     46     43     57     41
D473V3, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1           6            10
  CLUS_2          16            46
  CLUS_3           8            43
  CLUS_4           8            57
  CLUS_5          14            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLG MUTATED       16     16     13      7
  FLG WILD-TYPE     82     28     37     50
D473V4, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          16            82
  CLUS_2          16            28
  CLUS_3          13            37
  CLUS_4           7            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FLG MUTATED       18      8      8     11     11
  FLG WILD-TYPE     44     51     32     26     48
D473V5, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          18            44
  CLUS_2           8            51
  CLUS_3           8            32
  CLUS_4          11            26
  CLUS_5          11            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FLG MUTATED       15      7     34
  FLG WILD-TYPE     91     47     63
D473V6, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          15            91
  CLUS_2           7            47
  CLUS_3          34            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FLG MUTATED       38      9     15
  FLG WILD-TYPE     85     86     56
D473V7, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          38            85
  CLUS_2           9            86
  CLUS_3          15            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FLG MUTATED       40      7     15
  FLG WILD-TYPE    117     56     54
D473V8, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          40           117
  CLUS_2           7            56
  CLUS_3          15            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FLG MUTATED        8      5     16      7      2      4
  FLG WILD-TYPE     25     14     43     32     14     41
D473V9, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1           8            25
  CLUS_2           5            14
  CLUS_3          16            43
  CLUS_4           7            32
  CLUS_5           2            14
  CLUS_6           4            41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FLG MUTATED       19      3      9      5      2      4
  FLG WILD-TYPE     28     36     26     27     21     31
D473V10, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          19            28
  CLUS_2           3            36
  CLUS_3           9            26
  CLUS_4           5            27
  CLUS_5           2            21
  CLUS_6           4            31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(474) Variable = SAFB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SAFB MUTATED        0      6      1      2      0
  SAFB WILD-TYPE     79    120     26     41     12
D474V1, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            0             79
  CLUS_2            6            120
  CLUS_3            1             26
  CLUS_4            2             41
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAFB MUTATED        1      4      1      1
  SAFB WILD-TYPE     70     72     33     62
D474V2, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            1             70
  CLUS_2            4             72
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SAFB MUTATED        1      4      2      0      2
  SAFB WILD-TYPE     15     58     49     65     53
D474V3, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            1             15
  CLUS_2            4             58
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAFB MUTATED        1      5      2      1
  SAFB WILD-TYPE     97     39     48     56
D474V4, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            1             97
  CLUS_2            5             39
  CLUS_3            2             48
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SAFB MUTATED        3      4      0      0      0
  SAFB WILD-TYPE     59     55     40     37     59
D474V5, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            3             59
  CLUS_2            4             55
  CLUS_3            0             40
  CLUS_4            0             37
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SAFB MUTATED        3      1      3
  SAFB WILD-TYPE    103     53     94
D474V6, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            3            103
  CLUS_2            1             53
  CLUS_3            3             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SAFB MUTATED        4      4      1
  SAFB WILD-TYPE    119     91     70
D474V7, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            4            119
  CLUS_2            4             91
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SAFB MUTATED        5      3      1
  SAFB WILD-TYPE    152     60     68
D474V8, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            5            152
  CLUS_2            3             60
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SAFB MUTATED        0      0      2      1      0      3
  SAFB WILD-TYPE     33     19     57     38     16     42
D474V9, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             19
  CLUS_3            2             57
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            3             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SAFB MUTATED        2      1      0      1      1      1
  SAFB WILD-TYPE     45     38     35     31     22     34
D474V10, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            2             45
  CLUS_2            1             38
  CLUS_3            0             35
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(475) Variable = CD93 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD93 MUTATED        1      8      0      1      1
  CD93 WILD-TYPE     78    118     27     42     11
D475V1, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            1             78
  CLUS_2            8            118
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD93 MUTATED        1      7      1      0
  CD93 WILD-TYPE     70     69     33     63
D475V2, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            7             69
  CLUS_3            1             33
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD93 MUTATED        0      5      5      0      1
  CD93 WILD-TYPE     16     57     46     65     54
D475V3, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            5             57
  CLUS_3            5             46
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD93 MUTATED        1      7      2      1
  CD93 WILD-TYPE     97     37     48     56
D475V4, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            1             97
  CLUS_2            7             37
  CLUS_3            2             48
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD93 MUTATED        4      1      0      3      1
  CD93 WILD-TYPE     58     58     40     34     58
D475V5, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            1             58
  CLUS_3            0             40
  CLUS_4            3             34
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD93 MUTATED        1      1      7
  CD93 WILD-TYPE    105     53     90
D475V6, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            1             53
  CLUS_3            7             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD93 MUTATED        8      0      3
  CD93 WILD-TYPE    115     95     68
D475V7, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            8            115
  CLUS_2            0             95
  CLUS_3            3             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD93 MUTATED        9      0      2
  CD93 WILD-TYPE    148     63     67
D475V8, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            9            148
  CLUS_2            0             63
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CD93 MUTATED        2      2      2      1      0      0
  CD93 WILD-TYPE     31     17     57     38     16     45
D475V9, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            2             17
  CLUS_3            2             57
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CD93 MUTATED        2      0      1      2      1      1
  CD93 WILD-TYPE     45     39     34     30     22     34
D475V10, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            2             30
  CLUS_5            1             22
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(476) Variable = ERBB4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB4 MUTATED        7     20      5      4      2
  ERBB4 WILD-TYPE     72    106     22     39     10
D476V1, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             7              72
  CLUS_2            20             106
  CLUS_3             5              22
  CLUS_4             4              39
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB4 MUTATED        7     17      4      4
  ERBB4 WILD-TYPE     64     59     30     59
D476V2, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             7              64
  CLUS_2            17              59
  CLUS_3             4              30
  CLUS_4             4              59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB4 MUTATED        1     11      9      9      8
  ERBB4 WILD-TYPE     15     51     42     56     47
D476V3, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             1              15
  CLUS_2            11              51
  CLUS_3             9              42
  CLUS_4             9              56
  CLUS_5             8              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB4 MUTATED       10     13      4     11
  ERBB4 WILD-TYPE     88     31     46     46
D476V4, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            10              88
  CLUS_2            13              31
  CLUS_3             4              46
  CLUS_4            11              46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB4 MUTATED       12      6      3     10      5
  ERBB4 WILD-TYPE     50     53     37     27     54
D476V5, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            12              50
  CLUS_2             6              53
  CLUS_3             3              37
  CLUS_4            10              27
  CLUS_5             5              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB4 MUTATED       11      7     18
  ERBB4 WILD-TYPE     95     47     79
D476V6, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            11              95
  CLUS_2             7              47
  CLUS_3            18              79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB4 MUTATED       21      8     10
  ERBB4 WILD-TYPE    102     87     61
D476V7, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            21             102
  CLUS_2             8              87
  CLUS_3            10              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB4 MUTATED       24      5     10
  ERBB4 WILD-TYPE    133     58     59
D476V8, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            24             133
  CLUS_2             5              58
  CLUS_3            10              59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERBB4 MUTATED        5      5      8      5      3      5
  ERBB4 WILD-TYPE     28     14     51     34     13     40
D476V9, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             5              28
  CLUS_2             5              14
  CLUS_3             8              51
  CLUS_4             5              34
  CLUS_5             3              13
  CLUS_6             5              40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERBB4 MUTATED        8      4      5      5      5      4
  ERBB4 WILD-TYPE     39     35     30     27     18     31
D476V10, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             8              39
  CLUS_2             4              35
  CLUS_3             5              30
  CLUS_4             5              27
  CLUS_5             5              18
  CLUS_6             4              31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(477) Variable = KRTAP10-9 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP10-9 MUTATED        1      7      0      0      1
  KRTAP10-9 WILD-TYPE     78    119     27     43     11
D477V1, multiclass
        clus
vv       KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE
  CLUS_1                 1                  78
  CLUS_2                 7                 119
  CLUS_3                 0                  27
  CLUS_4                 0                  43
  CLUS_5                 1                  11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP10-9 MUTATED        1      5      0      1
  KRTAP10-9 WILD-TYPE     70     71     34     62
D477V2, multiclass
        clus
vv       KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE
  CLUS_1                 1                  70
  CLUS_2                 5                  71
  CLUS_3                 0                  34
  CLUS_4                 1                  62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP10-9 MUTATED        1      3      2      0      2
  KRTAP10-9 WILD-TYPE     15     59     49     65     53
D477V3, multiclass
        clus
vv       KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE
  CLUS_1                 1                  15
  CLUS_2                 3                  59
  CLUS_3                 2                  49
  CLUS_4                 0                  65
  CLUS_5                 2                  53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP10-9 MUTATED        3      3      2      0
  KRTAP10-9 WILD-TYPE     95     41     48     57
D477V4, multiclass
        clus
vv       KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE
  CLUS_1                 3                  95
  CLUS_2                 3                  41
  CLUS_3                 2                  48
  CLUS_4                 0                  57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP10-9 MUTATED        5      1      0      1      0
  KRTAP10-9 WILD-TYPE     57     58     40     36     59
D477V5, multiclass
        clus
vv       KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE
  CLUS_1                 5                  57
  CLUS_2                 1                  58
  CLUS_3                 0                  40
  CLUS_4                 1                  36
  CLUS_5                 0                  59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  KRTAP10-9 MUTATED        1      1      5
  KRTAP10-9 WILD-TYPE    105     53     92
D477V6, multiclass
        clus
vv       KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE
  CLUS_1                 1                 105
  CLUS_2                 1                  53
  CLUS_3                 5                  92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  KRTAP10-9 MUTATED        7      2      0
  KRTAP10-9 WILD-TYPE    116     93     71
D477V7, multiclass
        clus
vv       KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE
  CLUS_1                 7                 116
  CLUS_2                 2                  93
  CLUS_3                 0                  71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  KRTAP10-9 MUTATED        7      2      0
  KRTAP10-9 WILD-TYPE    150     61     69
D477V8, multiclass
        clus
vv       KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE
  CLUS_1                 7                 150
  CLUS_2                 2                  61
  CLUS_3                 0                  69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRTAP10-9 MUTATED        2      0      2      2      0      1
  KRTAP10-9 WILD-TYPE     31     19     57     37     16     44
D477V9, multiclass
        clus
vv       KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE
  CLUS_1                 2                  31
  CLUS_2                 0                  19
  CLUS_3                 2                  57
  CLUS_4                 2                  37
  CLUS_5                 0                  16
  CLUS_6                 1                  44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRTAP10-9 MUTATED        3      1      1      1      1      0
  KRTAP10-9 WILD-TYPE     44     38     34     31     22     35
D477V10, multiclass
        clus
vv       KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE
  CLUS_1                 3                  44
  CLUS_2                 1                  38
  CLUS_3                 1                  34
  CLUS_4                 1                  31
  CLUS_5                 1                  22
  CLUS_6                 0                  35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(478) Variable = LYSMD3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LYSMD3 MUTATED        1      7      1      0      1
  LYSMD3 WILD-TYPE     78    119     26     43     11
D478V1, multiclass
        clus
vv       LYSMD3 MUTATED LYSMD3 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              7              119
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LYSMD3 MUTATED        0      6      1      2
  LYSMD3 WILD-TYPE     71     70     33     61
D478V2, multiclass
        clus
vv       LYSMD3 MUTATED LYSMD3 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              6               70
  CLUS_3              1               33
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LYSMD3 MUTATED        1      1      0      2      4
  LYSMD3 WILD-TYPE     15     61     51     63     51
D478V3, multiclass
        clus
vv       LYSMD3 MUTATED LYSMD3 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              1               61
  CLUS_3              0               51
  CLUS_4              2               63
  CLUS_5              4               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LYSMD3 MUTATED        2      2      1      3
  LYSMD3 WILD-TYPE     96     42     49     54
D478V4, multiclass
        clus
vv       LYSMD3 MUTATED LYSMD3 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              2               42
  CLUS_3              1               49
  CLUS_4              3               54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LYSMD3 MUTATED        5      2      2      1      0
  LYSMD3 WILD-TYPE     57     57     38     36     59
D478V5, multiclass
        clus
vv       LYSMD3 MUTATED LYSMD3 WILD-TYPE
  CLUS_1              5               57
  CLUS_2              2               57
  CLUS_3              2               38
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LYSMD3 MUTATED        2      1      7
  LYSMD3 WILD-TYPE    104     53     90
D478V6, multiclass
        clus
vv       LYSMD3 MUTATED LYSMD3 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              1               53
  CLUS_3              7               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LYSMD3 MUTATED        7      2      1
  LYSMD3 WILD-TYPE    116     93     70
D478V7, multiclass
        clus
vv       LYSMD3 MUTATED LYSMD3 WILD-TYPE
  CLUS_1              7              116
  CLUS_2              2               93
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LYSMD3 MUTATED        8      1      1
  LYSMD3 WILD-TYPE    149     62     68
D478V8, multiclass
        clus
vv       LYSMD3 MUTATED LYSMD3 WILD-TYPE
  CLUS_1              8              149
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LYSMD3 MUTATED        1      1      2      2      1      1
  LYSMD3 WILD-TYPE     32     18     57     37     15     44
D478V9, multiclass
        clus
vv       LYSMD3 MUTATED LYSMD3 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              2               37
  CLUS_5              1               15
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LYSMD3 MUTATED        2      1      1      2      1      1
  LYSMD3 WILD-TYPE     45     38     34     30     22     34
D478V10, multiclass
        clus
vv       LYSMD3 MUTATED LYSMD3 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              1               38
  CLUS_3              1               34
  CLUS_4              2               30
  CLUS_5              1               22
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(479) Variable = KCTD9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCTD9 MUTATED        0      6      1      2      1
  KCTD9 WILD-TYPE     79    120     26     41     11
D479V1, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             1              26
  CLUS_4             2              41
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD9 MUTATED        1      4      0      1
  KCTD9 WILD-TYPE     70     72     34     62
D479V2, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             4              72
  CLUS_3             0              34
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCTD9 MUTATED        1      3      1      2      2
  KCTD9 WILD-TYPE     15     59     50     63     53
D479V3, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3              59
  CLUS_3             1              50
  CLUS_4             2              63
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD9 MUTATED        2      3      2      2
  KCTD9 WILD-TYPE     96     41     48     55
D479V4, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             3              41
  CLUS_3             2              48
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCTD9 MUTATED        4      3      2      0      0
  KCTD9 WILD-TYPE     58     56     38     37     59
D479V5, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             3              56
  CLUS_3             2              38
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCTD9 MUTATED        5      0      4
  KCTD9 WILD-TYPE    101     54     93
D479V6, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             5             101
  CLUS_2             0              54
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCTD9 MUTATED        7      2      1
  KCTD9 WILD-TYPE    116     93     70
D479V7, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             7             116
  CLUS_2             2              93
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCTD9 MUTATED        8      2      0
  KCTD9 WILD-TYPE    149     61     69
D479V8, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             8             149
  CLUS_2             2              61
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCTD9 MUTATED        0      2      1      1      0      2
  KCTD9 WILD-TYPE     33     17     58     38     16     43
D479V9, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              17
  CLUS_3             1              58
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             2              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCTD9 MUTATED        3      0      1      0      2      0
  KCTD9 WILD-TYPE     44     39     34     32     21     35
D479V10, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(480) Variable = CREM MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CREM MUTATED        0      3      0      1      0
  CREM WILD-TYPE     79    123     27     42     12
D480V1, multiclass
        clus
vv       CREM MUTATED CREM WILD-TYPE
  CLUS_1            0             79
  CLUS_2            3            123
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREM MUTATED        0      3      1      0
  CREM WILD-TYPE     71     73     33     63
D480V2, multiclass
        clus
vv       CREM MUTATED CREM WILD-TYPE
  CLUS_1            0             71
  CLUS_2            3             73
  CLUS_3            1             33
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CREM MUTATED        0      2      0      0      1
  CREM WILD-TYPE     16     60     51     65     54
D480V3, multiclass
        clus
vv       CREM MUTATED CREM WILD-TYPE
  CLUS_1            0             16
  CLUS_2            2             60
  CLUS_3            0             51
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREM MUTATED        0      2      1      0
  CREM WILD-TYPE     98     42     49     57
D480V4, multiclass
        clus
vv       CREM MUTATED CREM WILD-TYPE
  CLUS_1            0             98
  CLUS_2            2             42
  CLUS_3            1             49
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CREM MUTATED        3      0      0      1      0
  CREM WILD-TYPE     59     59     40     36     59
D480V5, multiclass
        clus
vv       CREM MUTATED CREM WILD-TYPE
  CLUS_1            3             59
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CREM MUTATED        1      0      3
  CREM WILD-TYPE    105     54     94
D480V6, multiclass
        clus
vv       CREM MUTATED CREM WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            3             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CREM MUTATED        4      0      0
  CREM WILD-TYPE    119     95     71
D480V7, multiclass
        clus
vv       CREM MUTATED CREM WILD-TYPE
  CLUS_1            4            119
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CREM MUTATED        4      0      0
  CREM WILD-TYPE    153     63     69
D480V8, multiclass
        clus
vv       CREM MUTATED CREM WILD-TYPE
  CLUS_1            4            153
  CLUS_2            0             63
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CREM MUTATED        1      2      1      0      0      0
  CREM WILD-TYPE     32     17     58     39     16     45
D480V9, multiclass
        clus
vv       CREM MUTATED CREM WILD-TYPE
  CLUS_1            1             32
  CLUS_2            2             17
  CLUS_3            1             58
  CLUS_4            0             39
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CREM MUTATED        2      0      1      1      0      0
  CREM WILD-TYPE     45     39     34     31     23     35
D480V10, multiclass
        clus
vv       CREM MUTATED CREM WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            1             31
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(481) Variable = MTMR11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTMR11 MUTATED        2      4      1      1      0
  MTMR11 WILD-TYPE     77    122     26     42     12
D481V1, multiclass
        clus
vv       MTMR11 MUTATED MTMR11 WILD-TYPE
  CLUS_1              2               77
  CLUS_2              4              122
  CLUS_3              1               26
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR11 MUTATED        2      4      0      0
  MTMR11 WILD-TYPE     69     72     34     63
D481V2, multiclass
        clus
vv       MTMR11 MUTATED MTMR11 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              4               72
  CLUS_3              0               34
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTMR11 MUTATED        0      2      1      2      0
  MTMR11 WILD-TYPE     16     60     50     63     55
D481V3, multiclass
        clus
vv       MTMR11 MUTATED MTMR11 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              2               60
  CLUS_3              1               50
  CLUS_4              2               63
  CLUS_5              0               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR11 MUTATED        0      1      2      2
  MTMR11 WILD-TYPE     98     43     48     55
D481V4, multiclass
        clus
vv       MTMR11 MUTATED MTMR11 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              1               43
  CLUS_3              2               48
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTMR11 MUTATED        2      1      2      1      2
  MTMR11 WILD-TYPE     60     58     38     36     57
D481V5, multiclass
        clus
vv       MTMR11 MUTATED MTMR11 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              1               58
  CLUS_3              2               38
  CLUS_4              1               36
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MTMR11 MUTATED        2      0      6
  MTMR11 WILD-TYPE    104     54     91
D481V6, multiclass
        clus
vv       MTMR11 MUTATED MTMR11 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              0               54
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MTMR11 MUTATED        5      1      2
  MTMR11 WILD-TYPE    118     94     69
D481V7, multiclass
        clus
vv       MTMR11 MUTATED MTMR11 WILD-TYPE
  CLUS_1              5              118
  CLUS_2              1               94
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MTMR11 MUTATED        5      0      3
  MTMR11 WILD-TYPE    152     63     66
D481V8, multiclass
        clus
vv       MTMR11 MUTATED MTMR11 WILD-TYPE
  CLUS_1              5              152
  CLUS_2              0               63
  CLUS_3              3               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MTMR11 MUTATED        2      1      2      1      0      0
  MTMR11 WILD-TYPE     31     18     57     38     16     45
D481V9, multiclass
        clus
vv       MTMR11 MUTATED MTMR11 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MTMR11 MUTATED        4      0      1      0      0      1
  MTMR11 WILD-TYPE     43     39     34     32     23     34
D481V10, multiclass
        clus
vv       MTMR11 MUTATED MTMR11 WILD-TYPE
  CLUS_1              4               43
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(482) Variable = ANAPC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANAPC1 MUTATED        0     11      0      1      0
  ANAPC1 WILD-TYPE     79    115     27     42     12
D482V1, multiclass
        clus
vv       ANAPC1 MUTATED ANAPC1 WILD-TYPE
  CLUS_1              0               79
  CLUS_2             11              115
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANAPC1 MUTATED        0      7      3      1
  ANAPC1 WILD-TYPE     71     69     31     62
D482V2, multiclass
        clus
vv       ANAPC1 MUTATED ANAPC1 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              7               69
  CLUS_3              3               31
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANAPC1 MUTATED        0      5      2      0      4
  ANAPC1 WILD-TYPE     16     57     49     65     51
D482V3, multiclass
        clus
vv       ANAPC1 MUTATED ANAPC1 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              5               57
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              4               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANAPC1 MUTATED        0      7      3      1
  ANAPC1 WILD-TYPE     98     37     47     56
D482V4, multiclass
        clus
vv       ANAPC1 MUTATED ANAPC1 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              7               37
  CLUS_3              3               47
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANAPC1 MUTATED        8      0      0      3      0
  ANAPC1 WILD-TYPE     54     59     40     34     59
D482V5, multiclass
        clus
vv       ANAPC1 MUTATED ANAPC1 WILD-TYPE
  CLUS_1              8               54
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              3               34
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANAPC1 MUTATED        3      0      8
  ANAPC1 WILD-TYPE    103     54     89
D482V6, multiclass
        clus
vv       ANAPC1 MUTATED ANAPC1 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              0               54
  CLUS_3              8               89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANAPC1 MUTATED       10      2      1
  ANAPC1 WILD-TYPE    113     93     70
D482V7, multiclass
        clus
vv       ANAPC1 MUTATED ANAPC1 WILD-TYPE
  CLUS_1             10              113
  CLUS_2              2               93
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANAPC1 MUTATED       10      2      1
  ANAPC1 WILD-TYPE    147     61     68
D482V8, multiclass
        clus
vv       ANAPC1 MUTATED ANAPC1 WILD-TYPE
  CLUS_1             10              147
  CLUS_2              2               61
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ANAPC1 MUTATED        2      0      5      3      0      0
  ANAPC1 WILD-TYPE     31     19     54     36     16     45
D482V9, multiclass
        clus
vv       ANAPC1 MUTATED ANAPC1 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               19
  CLUS_3              5               54
  CLUS_4              3               36
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ANAPC1 MUTATED        3      0      2      1      4      0
  ANAPC1 WILD-TYPE     44     39     33     31     19     35
D482V10, multiclass
        clus
vv       ANAPC1 MUTATED ANAPC1 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              1               31
  CLUS_5              4               19
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(483) Variable = EYA4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EYA4 MUTATED        4      9      1      0      1
  EYA4 WILD-TYPE     75    117     26     43     11
D483V1, multiclass
        clus
vv       EYA4 MUTATED EYA4 WILD-TYPE
  CLUS_1            4             75
  CLUS_2            9            117
  CLUS_3            1             26
  CLUS_4            0             43
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EYA4 MUTATED        4      5      1      2
  EYA4 WILD-TYPE     67     71     33     61
D483V2, multiclass
        clus
vv       EYA4 MUTATED EYA4 WILD-TYPE
  CLUS_1            4             67
  CLUS_2            5             71
  CLUS_3            1             33
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EYA4 MUTATED        2      2      4      0      4
  EYA4 WILD-TYPE     14     60     47     65     51
D483V3, multiclass
        clus
vv       EYA4 MUTATED EYA4 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            2             60
  CLUS_3            4             47
  CLUS_4            0             65
  CLUS_5            4             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EYA4 MUTATED        6      4      1      1
  EYA4 WILD-TYPE     92     40     49     56
D483V4, multiclass
        clus
vv       EYA4 MUTATED EYA4 WILD-TYPE
  CLUS_1            6             92
  CLUS_2            4             40
  CLUS_3            1             49
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EYA4 MUTATED        6      1      2      1      3
  EYA4 WILD-TYPE     56     58     38     36     56
D483V5, multiclass
        clus
vv       EYA4 MUTATED EYA4 WILD-TYPE
  CLUS_1            6             56
  CLUS_2            1             58
  CLUS_3            2             38
  CLUS_4            1             36
  CLUS_5            3             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EYA4 MUTATED        5      1      7
  EYA4 WILD-TYPE    101     53     90
D483V6, multiclass
        clus
vv       EYA4 MUTATED EYA4 WILD-TYPE
  CLUS_1            5            101
  CLUS_2            1             53
  CLUS_3            7             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EYA4 MUTATED       10      3      2
  EYA4 WILD-TYPE    113     92     69
D483V7, multiclass
        clus
vv       EYA4 MUTATED EYA4 WILD-TYPE
  CLUS_1           10            113
  CLUS_2            3             92
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EYA4 MUTATED       11      1      3
  EYA4 WILD-TYPE    146     62     66
D483V8, multiclass
        clus
vv       EYA4 MUTATED EYA4 WILD-TYPE
  CLUS_1           11            146
  CLUS_2            1             62
  CLUS_3            3             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EYA4 MUTATED        1      1      3      1      0      2
  EYA4 WILD-TYPE     32     18     56     38     16     43
D483V9, multiclass
        clus
vv       EYA4 MUTATED EYA4 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            3             56
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            2             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EYA4 MUTATED        3      1      2      1      0      1
  EYA4 WILD-TYPE     44     38     33     31     23     34
D483V10, multiclass
        clus
vv       EYA4 MUTATED EYA4 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            1             38
  CLUS_3            2             33
  CLUS_4            1             31
  CLUS_5            0             23
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(484) Variable = H2AFY2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  H2AFY2 MUTATED        1      5      0      1      0
  H2AFY2 WILD-TYPE     78    121     27     42     12
D484V1, multiclass
        clus
vv       H2AFY2 MUTATED H2AFY2 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              5              121
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  H2AFY2 MUTATED        1      4      0      0
  H2AFY2 WILD-TYPE     70     72     34     63
D484V2, multiclass
        clus
vv       H2AFY2 MUTATED H2AFY2 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              4               72
  CLUS_3              0               34
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  H2AFY2 MUTATED        0      2      2      1      2
  H2AFY2 WILD-TYPE     16     60     49     64     53
D484V3, multiclass
        clus
vv       H2AFY2 MUTATED H2AFY2 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              2               60
  CLUS_3              2               49
  CLUS_4              1               64
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  H2AFY2 MUTATED        1      2      2      2
  H2AFY2 WILD-TYPE     97     42     48     55
D484V4, multiclass
        clus
vv       H2AFY2 MUTATED H2AFY2 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              2               42
  CLUS_3              2               48
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  H2AFY2 MUTATED        1      2      2      0      1
  H2AFY2 WILD-TYPE     61     57     38     37     58
D484V5, multiclass
        clus
vv       H2AFY2 MUTATED H2AFY2 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              2               57
  CLUS_3              2               38
  CLUS_4              0               37
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  H2AFY2 MUTATED        2      1      3
  H2AFY2 WILD-TYPE    104     53     94
D484V6, multiclass
        clus
vv       H2AFY2 MUTATED H2AFY2 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              1               53
  CLUS_3              3               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  H2AFY2 MUTATED        4      1      2
  H2AFY2 WILD-TYPE    119     94     69
D484V7, multiclass
        clus
vv       H2AFY2 MUTATED H2AFY2 WILD-TYPE
  CLUS_1              4              119
  CLUS_2              1               94
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  H2AFY2 MUTATED        4      0      3
  H2AFY2 WILD-TYPE    153     63     66
D484V8, multiclass
        clus
vv       H2AFY2 MUTATED H2AFY2 WILD-TYPE
  CLUS_1              4              153
  CLUS_2              0               63
  CLUS_3              3               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  H2AFY2 MUTATED        2      2      0      1      0      0
  H2AFY2 WILD-TYPE     31     17     59     38     16     45
D484V9, multiclass
        clus
vv       H2AFY2 MUTATED H2AFY2 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              2               17
  CLUS_3              0               59
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  H2AFY2 MUTATED        2      0      0      1      1      1
  H2AFY2 WILD-TYPE     45     39     35     31     22     34
D484V10, multiclass
        clus
vv       H2AFY2 MUTATED H2AFY2 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              0               35
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(485) Variable = RDX MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RDX MUTATED        2      5      0      0      0
  RDX WILD-TYPE     77    121     27     43     12
D485V1, multiclass
        clus
vv       RDX MUTATED RDX WILD-TYPE
  CLUS_1           2            77
  CLUS_2           5           121
  CLUS_3           0            27
  CLUS_4           0            43
  CLUS_5           0            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RDX MUTATED        2      1      2      0
  RDX WILD-TYPE     69     75     32     63
D485V2, multiclass
        clus
vv       RDX MUTATED RDX WILD-TYPE
  CLUS_1           2            69
  CLUS_2           1            75
  CLUS_3           2            32
  CLUS_4           0            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RDX MUTATED        0      4      1      0      1
  RDX WILD-TYPE     16     58     50     65     54
D485V3, multiclass
        clus
vv       RDX MUTATED RDX WILD-TYPE
  CLUS_1           0            16
  CLUS_2           4            58
  CLUS_3           1            50
  CLUS_4           0            65
  CLUS_5           1            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RDX MUTATED        0      4      2      0
  RDX WILD-TYPE     98     40     48     57
D485V4, multiclass
        clus
vv       RDX MUTATED RDX WILD-TYPE
  CLUS_1           0            98
  CLUS_2           4            40
  CLUS_3           2            48
  CLUS_4           0            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RDX MUTATED        3      0      1      0      1
  RDX WILD-TYPE     59     59     39     37     58
D485V5, multiclass
        clus
vv       RDX MUTATED RDX WILD-TYPE
  CLUS_1           3            59
  CLUS_2           0            59
  CLUS_3           1            39
  CLUS_4           0            37
  CLUS_5           1            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RDX MUTATED        2      0      3
  RDX WILD-TYPE    104     54     94
D485V6, multiclass
        clus
vv       RDX MUTATED RDX WILD-TYPE
  CLUS_1           2           104
  CLUS_2           0            54
  CLUS_3           3            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RDX MUTATED        4      1      2
  RDX WILD-TYPE    119     94     69
D485V7, multiclass
        clus
vv       RDX MUTATED RDX WILD-TYPE
  CLUS_1           4           119
  CLUS_2           1            94
  CLUS_3           2            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RDX MUTATED        5      0      2
  RDX WILD-TYPE    152     63     67
D485V8, multiclass
        clus
vv       RDX MUTATED RDX WILD-TYPE
  CLUS_1           5           152
  CLUS_2           0            63
  CLUS_3           2            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RDX MUTATED        2      0      1      2      0      0
  RDX WILD-TYPE     31     19     58     37     16     45
D485V9, multiclass
        clus
vv       RDX MUTATED RDX WILD-TYPE
  CLUS_1           2            31
  CLUS_2           0            19
  CLUS_3           1            58
  CLUS_4           2            37
  CLUS_5           0            16
  CLUS_6           0            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RDX MUTATED        0      0      1      0      2      2
  RDX WILD-TYPE     47     39     34     32     21     33
D485V10, multiclass
        clus
vv       RDX MUTATED RDX WILD-TYPE
  CLUS_1           0            47
  CLUS_2           0            39
  CLUS_3           1            34
  CLUS_4           0            32
  CLUS_5           2            21
  CLUS_6           2            33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(486) Variable = TAF7L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF7L MUTATED        0      6      0      2      0
  TAF7L WILD-TYPE     79    120     27     41     12
D486V1, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             2              41
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF7L MUTATED        0      2      4      2
  TAF7L WILD-TYPE     71     74     30     61
D486V2, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             0              71
  CLUS_2             2              74
  CLUS_3             4              30
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF7L MUTATED        1      4      1      1      1
  TAF7L WILD-TYPE     15     58     50     64     54
D486V3, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             1              15
  CLUS_2             4              58
  CLUS_3             1              50
  CLUS_4             1              64
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF7L MUTATED        1      2      3      2
  TAF7L WILD-TYPE     97     42     47     55
D486V4, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             1              97
  CLUS_2             2              42
  CLUS_3             3              47
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF7L MUTATED        8      0      0      0      0
  TAF7L WILD-TYPE     54     59     40     37     59
D486V5, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             8              54
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF7L MUTATED        3      1      4
  TAF7L WILD-TYPE    103     53     93
D486V6, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             3             103
  CLUS_2             1              53
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF7L MUTATED        8      0      0
  TAF7L WILD-TYPE    115     95     71
D486V7, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             8             115
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF7L MUTATED        7      1      0
  TAF7L WILD-TYPE    150     62     69
D486V8, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             7             150
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAF7L MUTATED        0      1      4      1      0      0
  TAF7L WILD-TYPE     33     18     55     38     16     45
D486V9, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              18
  CLUS_3             4              55
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAF7L MUTATED        1      0      3      0      2      0
  TAF7L WILD-TYPE     46     39     32     32     21     35
D486V10, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              39
  CLUS_3             3              32
  CLUS_4             0              32
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(487) Variable = OPLAH MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OPLAH MUTATED        0     10      2      2      0
  OPLAH WILD-TYPE     79    116     25     41     12
D487V1, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             0              79
  CLUS_2            10             116
  CLUS_3             2              25
  CLUS_4             2              41
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OPLAH MUTATED        1      7      2      1
  OPLAH WILD-TYPE     70     69     32     62
D487V2, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             1              70
  CLUS_2             7              69
  CLUS_3             2              32
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OPLAH MUTATED        1      1      6      0      5
  OPLAH WILD-TYPE     15     61     45     65     50
D487V3, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             1              15
  CLUS_2             1              61
  CLUS_3             6              45
  CLUS_4             0              65
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OPLAH MUTATED        3      9      0      1
  OPLAH WILD-TYPE     95     35     50     56
D487V4, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             3              95
  CLUS_2             9              35
  CLUS_3             0              50
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OPLAH MUTATED        6      1      0      4      1
  OPLAH WILD-TYPE     56     58     40     33     58
D487V5, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             6              56
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             4              33
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OPLAH MUTATED        3      0      9
  OPLAH WILD-TYPE    103     54     88
D487V6, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             9              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OPLAH MUTATED       11      2      1
  OPLAH WILD-TYPE    112     93     70
D487V7, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1            11             112
  CLUS_2             2              93
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OPLAH MUTATED       11      2      1
  OPLAH WILD-TYPE    146     61     68
D487V8, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1            11             146
  CLUS_2             2              61
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OPLAH MUTATED        3      2      2      2      0      2
  OPLAH WILD-TYPE     30     17     57     37     16     43
D487V9, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             3              30
  CLUS_2             2              17
  CLUS_3             2              57
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             2              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OPLAH MUTATED        4      2      1      1      2      1
  OPLAH WILD-TYPE     43     37     34     31     21     34
D487V10, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             4              43
  CLUS_2             2              37
  CLUS_3             1              34
  CLUS_4             1              31
  CLUS_5             2              21
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(488) Variable = ACACB MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACACB MUTATED        1     20      4      2      1
  ACACB WILD-TYPE     78    106     23     41     11
D488V1, multiclass
        clus
vv       ACACB MUTATED ACACB WILD-TYPE
  CLUS_1             1              78
  CLUS_2            20             106
  CLUS_3             4              23
  CLUS_4             2              41
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACACB MUTATED        1     12      7      2
  ACACB WILD-TYPE     70     64     27     61
D488V2, multiclass
        clus
vv       ACACB MUTATED ACACB WILD-TYPE
  CLUS_1             1              70
  CLUS_2            12              64
  CLUS_3             7              27
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACACB MUTATED        1      5      6      4     11
  ACACB WILD-TYPE     15     57     45     61     44
D488V3, multiclass
        clus
vv       ACACB MUTATED ACACB WILD-TYPE
  CLUS_1             1              15
  CLUS_2             5              57
  CLUS_3             6              45
  CLUS_4             4              61
  CLUS_5            11              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACACB MUTATED        3     13      5      6
  ACACB WILD-TYPE     95     31     45     51
D488V4, multiclass
        clus
vv       ACACB MUTATED ACACB WILD-TYPE
  CLUS_1             3              95
  CLUS_2            13              31
  CLUS_3             5              45
  CLUS_4             6              51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACACB MUTATED       12      4      1      7      1
  ACACB WILD-TYPE     50     55     39     30     58
D488V5, multiclass
        clus
vv       ACACB MUTATED ACACB WILD-TYPE
  CLUS_1            12              50
  CLUS_2             4              55
  CLUS_3             1              39
  CLUS_4             7              30
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACACB MUTATED        8      3     14
  ACACB WILD-TYPE     98     51     83
D488V6, multiclass
        clus
vv       ACACB MUTATED ACACB WILD-TYPE
  CLUS_1             8              98
  CLUS_2             3              51
  CLUS_3            14              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACACB MUTATED       18      6      4
  ACACB WILD-TYPE    105     89     67
D488V7, multiclass
        clus
vv       ACACB MUTATED ACACB WILD-TYPE
  CLUS_1            18             105
  CLUS_2             6              89
  CLUS_3             4              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACACB MUTATED       21      6      1
  ACACB WILD-TYPE    136     57     68
D488V8, multiclass
        clus
vv       ACACB MUTATED ACACB WILD-TYPE
  CLUS_1            21             136
  CLUS_2             6              57
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACACB MUTATED        2      4      6      1      1      4
  ACACB WILD-TYPE     31     15     53     38     15     41
D488V9, multiclass
        clus
vv       ACACB MUTATED ACACB WILD-TYPE
  CLUS_1             2              31
  CLUS_2             4              15
  CLUS_3             6              53
  CLUS_4             1              38
  CLUS_5             1              15
  CLUS_6             4              41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACACB MUTATED        5      2      6      3      2      0
  ACACB WILD-TYPE     42     37     29     29     21     35
D488V10, multiclass
        clus
vv       ACACB MUTATED ACACB WILD-TYPE
  CLUS_1             5              42
  CLUS_2             2              37
  CLUS_3             6              29
  CLUS_4             3              29
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(489) Variable = TNS4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNS4 MUTATED        2     10      0      0      0
  TNS4 WILD-TYPE     77    116     27     43     12
D489V1, multiclass
        clus
vv       TNS4 MUTATED TNS4 WILD-TYPE
  CLUS_1            2             77
  CLUS_2           10            116
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNS4 MUTATED        2      5      1      1
  TNS4 WILD-TYPE     69     71     33     62
D489V2, multiclass
        clus
vv       TNS4 MUTATED TNS4 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            5             71
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNS4 MUTATED        0      5      4      0      3
  TNS4 WILD-TYPE     16     57     47     65     52
D489V3, multiclass
        clus
vv       TNS4 MUTATED TNS4 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            5             57
  CLUS_3            4             47
  CLUS_4            0             65
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNS4 MUTATED        3      4      4      1
  TNS4 WILD-TYPE     95     40     46     56
D489V4, multiclass
        clus
vv       TNS4 MUTATED TNS4 WILD-TYPE
  CLUS_1            3             95
  CLUS_2            4             40
  CLUS_3            4             46
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNS4 MUTATED        5      1      0      4      2
  TNS4 WILD-TYPE     57     58     40     33     57
D489V5, multiclass
        clus
vv       TNS4 MUTATED TNS4 WILD-TYPE
  CLUS_1            5             57
  CLUS_2            1             58
  CLUS_3            0             40
  CLUS_4            4             33
  CLUS_5            2             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TNS4 MUTATED        4      2      6
  TNS4 WILD-TYPE    102     52     91
D489V6, multiclass
        clus
vv       TNS4 MUTATED TNS4 WILD-TYPE
  CLUS_1            4            102
  CLUS_2            2             52
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TNS4 MUTATED        8      2      2
  TNS4 WILD-TYPE    115     93     69
D489V7, multiclass
        clus
vv       TNS4 MUTATED TNS4 WILD-TYPE
  CLUS_1            8            115
  CLUS_2            2             93
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TNS4 MUTATED        8      2      2
  TNS4 WILD-TYPE    149     61     67
D489V8, multiclass
        clus
vv       TNS4 MUTATED TNS4 WILD-TYPE
  CLUS_1            8            149
  CLUS_2            2             61
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNS4 MUTATED        2      0      4      2      0      1
  TNS4 WILD-TYPE     31     19     55     37     16     44
D489V9, multiclass
        clus
vv       TNS4 MUTATED TNS4 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             19
  CLUS_3            4             55
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNS4 MUTATED        2      1      2      0      3      1
  TNS4 WILD-TYPE     45     38     33     32     20     34
D489V10, multiclass
        clus
vv       TNS4 MUTATED TNS4 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            1             38
  CLUS_3            2             33
  CLUS_4            0             32
  CLUS_5            3             20
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(490) Variable = CHRNB3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHRNB3 MUTATED        1      5      1      2      2
  CHRNB3 WILD-TYPE     78    121     26     41     10
D490V1, multiclass
        clus
vv       CHRNB3 MUTATED CHRNB3 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              5              121
  CLUS_3              1               26
  CLUS_4              2               41
  CLUS_5              2               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRNB3 MUTATED        0      3      1      2
  CHRNB3 WILD-TYPE     71     73     33     61
D490V2, multiclass
        clus
vv       CHRNB3 MUTATED CHRNB3 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              3               73
  CLUS_3              1               33
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHRNB3 MUTATED        1      3      2      2      3
  CHRNB3 WILD-TYPE     15     59     49     63     52
D490V3, multiclass
        clus
vv       CHRNB3 MUTATED CHRNB3 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              3               59
  CLUS_3              2               49
  CLUS_4              2               63
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHRNB3 MUTATED        5      2      1      3
  CHRNB3 WILD-TYPE     93     42     49     54
D490V4, multiclass
        clus
vv       CHRNB3 MUTATED CHRNB3 WILD-TYPE
  CLUS_1              5               93
  CLUS_2              2               42
  CLUS_3              1               49
  CLUS_4              3               54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHRNB3 MUTATED        5      2      1      1      1
  CHRNB3 WILD-TYPE     57     57     39     36     58
D490V5, multiclass
        clus
vv       CHRNB3 MUTATED CHRNB3 WILD-TYPE
  CLUS_1              5               57
  CLUS_2              2               57
  CLUS_3              1               39
  CLUS_4              1               36
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHRNB3 MUTATED        2      1      7
  CHRNB3 WILD-TYPE    104     53     90
D490V6, multiclass
        clus
vv       CHRNB3 MUTATED CHRNB3 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              1               53
  CLUS_3              7               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHRNB3 MUTATED        9      2      0
  CHRNB3 WILD-TYPE    114     93     71
D490V7, multiclass
        clus
vv       CHRNB3 MUTATED CHRNB3 WILD-TYPE
  CLUS_1              9              114
  CLUS_2              2               93
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CHRNB3 MUTATED        9      1      1
  CHRNB3 WILD-TYPE    148     62     68
D490V8, multiclass
        clus
vv       CHRNB3 MUTATED CHRNB3 WILD-TYPE
  CLUS_1              9              148
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CHRNB3 MUTATED        2      0      1      1      1      1
  CHRNB3 WILD-TYPE     31     19     58     38     15     44
D490V9, multiclass
        clus
vv       CHRNB3 MUTATED CHRNB3 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               19
  CLUS_3              1               58
  CLUS_4              1               38
  CLUS_5              1               15
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CHRNB3 MUTATED        1      1      1      1      1      1
  CHRNB3 WILD-TYPE     46     38     34     31     22     34
D490V10, multiclass
        clus
vv       CHRNB3 MUTATED CHRNB3 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              1               38
  CLUS_3              1               34
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(491) Variable = CLGN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLGN MUTATED        0      7      0      1      0
  CLGN WILD-TYPE     79    119     27     42     12
D491V1, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            0             79
  CLUS_2            7            119
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLGN MUTATED        0      4      0      1
  CLGN WILD-TYPE     71     72     34     62
D491V2, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            0             71
  CLUS_2            4             72
  CLUS_3            0             34
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLGN MUTATED        1      4      2      0      1
  CLGN WILD-TYPE     15     58     49     65     54
D491V3, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            1             15
  CLUS_2            4             58
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLGN MUTATED        2      5      1      0
  CLGN WILD-TYPE     96     39     49     57
D491V4, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            2             96
  CLUS_2            5             39
  CLUS_3            1             49
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLGN MUTATED        3      2      0      2      0
  CLGN WILD-TYPE     59     57     40     35     59
D491V5, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            3             59
  CLUS_2            2             57
  CLUS_3            0             40
  CLUS_4            2             35
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CLGN MUTATED        2      1      4
  CLGN WILD-TYPE    104     53     93
D491V6, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            2            104
  CLUS_2            1             53
  CLUS_3            4             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CLGN MUTATED        7      1      0
  CLGN WILD-TYPE    116     94     71
D491V7, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            7            116
  CLUS_2            1             94
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CLGN MUTATED        7      1      0
  CLGN WILD-TYPE    150     62     69
D491V8, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            7            150
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CLGN MUTATED        0      0      3      1      0      1
  CLGN WILD-TYPE     33     19     56     38     16     44
D491V9, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             19
  CLUS_3            3             56
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CLGN MUTATED        2      1      2      0      0      0
  CLGN WILD-TYPE     45     38     33     32     23     35
D491V10, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            2             45
  CLUS_2            1             38
  CLUS_3            2             33
  CLUS_4            0             32
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(492) Variable = MYCT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYCT1 MUTATED        1      2      1      2      0
  MYCT1 WILD-TYPE     78    124     26     41     12
D492V1, multiclass
        clus
vv       MYCT1 MUTATED MYCT1 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             2             124
  CLUS_3             1              26
  CLUS_4             2              41
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYCT1 MUTATED        3      1      0      0
  MYCT1 WILD-TYPE     68     75     34     63
D492V2, multiclass
        clus
vv       MYCT1 MUTATED MYCT1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             1              75
  CLUS_3             0              34
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYCT1 MUTATED        0      1      3      0      1
  MYCT1 WILD-TYPE     16     61     48     65     54
D492V3, multiclass
        clus
vv       MYCT1 MUTATED MYCT1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              61
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYCT1 MUTATED        2      3      0      0
  MYCT1 WILD-TYPE     96     41     50     57
D492V4, multiclass
        clus
vv       MYCT1 MUTATED MYCT1 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             3              41
  CLUS_3             0              50
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYCT1 MUTATED        3      0      0      1      1
  MYCT1 WILD-TYPE     59     59     40     36     58
D492V5, multiclass
        clus
vv       MYCT1 MUTATED MYCT1 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYCT1 MUTATED        2      0      3
  MYCT1 WILD-TYPE    104     54     94
D492V6, multiclass
        clus
vv       MYCT1 MUTATED MYCT1 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYCT1 MUTATED        4      0      2
  MYCT1 WILD-TYPE    119     95     69
D492V7, multiclass
        clus
vv       MYCT1 MUTATED MYCT1 WILD-TYPE
  CLUS_1             4             119
  CLUS_2             0              95
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYCT1 MUTATED        3      0      3
  MYCT1 WILD-TYPE    154     63     66
D492V8, multiclass
        clus
vv       MYCT1 MUTATED MYCT1 WILD-TYPE
  CLUS_1             3             154
  CLUS_2             0              63
  CLUS_3             3              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MYCT1 MUTATED        1      0      1      2      0      0
  MYCT1 WILD-TYPE     32     19     58     37     16     45
D492V9, multiclass
        clus
vv       MYCT1 MUTATED MYCT1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             1              58
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MYCT1 MUTATED        0      0      1      0      0      3
  MYCT1 WILD-TYPE     47     39     34     32     23     32
D492V10, multiclass
        clus
vv       MYCT1 MUTATED MYCT1 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             3              32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(493) Variable = FOLH1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOLH1 MUTATED        1      7      2      1      0
  FOLH1 WILD-TYPE     78    119     25     42     12
D493V1, multiclass
        clus
vv       FOLH1 MUTATED FOLH1 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             7             119
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOLH1 MUTATED        2      5      1      1
  FOLH1 WILD-TYPE     69     71     33     62
D493V2, multiclass
        clus
vv       FOLH1 MUTATED FOLH1 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             5              71
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOLH1 MUTATED        1      5      3      1      1
  FOLH1 WILD-TYPE     15     57     48     64     54
D493V3, multiclass
        clus
vv       FOLH1 MUTATED FOLH1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             5              57
  CLUS_3             3              48
  CLUS_4             1              64
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOLH1 MUTATED        3      4      3      1
  FOLH1 WILD-TYPE     95     40     47     56
D493V4, multiclass
        clus
vv       FOLH1 MUTATED FOLH1 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             4              40
  CLUS_3             3              47
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOLH1 MUTATED        3      1      1      1      1
  FOLH1 WILD-TYPE     59     58     39     36     58
D493V5, multiclass
        clus
vv       FOLH1 MUTATED FOLH1 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOLH1 MUTATED        2      1      4
  FOLH1 WILD-TYPE    104     53     93
D493V6, multiclass
        clus
vv       FOLH1 MUTATED FOLH1 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              53
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOLH1 MUTATED        5      4      2
  FOLH1 WILD-TYPE    118     91     69
D493V7, multiclass
        clus
vv       FOLH1 MUTATED FOLH1 WILD-TYPE
  CLUS_1             5             118
  CLUS_2             4              91
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOLH1 MUTATED        6      3      2
  FOLH1 WILD-TYPE    151     60     67
D493V8, multiclass
        clus
vv       FOLH1 MUTATED FOLH1 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             3              60
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FOLH1 MUTATED        2      0      5      0      0      2
  FOLH1 WILD-TYPE     31     19     54     39     16     43
D493V9, multiclass
        clus
vv       FOLH1 MUTATED FOLH1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              19
  CLUS_3             5              54
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             2              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FOLH1 MUTATED        2      1      3      0      2      1
  FOLH1 WILD-TYPE     45     38     32     32     21     34
D493V10, multiclass
        clus
vv       FOLH1 MUTATED FOLH1 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             0              32
  CLUS_5             2              21
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(494) Variable = PIGT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGT MUTATED        0      6      2      0      0
  PIGT WILD-TYPE     79    120     25     43     12
D494V1, multiclass
        clus
vv       PIGT MUTATED PIGT WILD-TYPE
  CLUS_1            0             79
  CLUS_2            6            120
  CLUS_3            2             25
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGT MUTATED        0      6      0      2
  PIGT WILD-TYPE     71     70     34     61
D494V2, multiclass
        clus
vv       PIGT MUTATED PIGT WILD-TYPE
  CLUS_1            0             71
  CLUS_2            6             70
  CLUS_3            0             34
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGT MUTATED        1      3      0      1      1
  PIGT WILD-TYPE     15     59     51     64     54
D494V3, multiclass
        clus
vv       PIGT MUTATED PIGT WILD-TYPE
  CLUS_1            1             15
  CLUS_2            3             59
  CLUS_3            0             51
  CLUS_4            1             64
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGT MUTATED        1      1      3      1
  PIGT WILD-TYPE     97     43     47     56
D494V4, multiclass
        clus
vv       PIGT MUTATED PIGT WILD-TYPE
  CLUS_1            1             97
  CLUS_2            1             43
  CLUS_3            3             47
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGT MUTATED        3      1      1      2      0
  PIGT WILD-TYPE     59     58     39     35     59
D494V5, multiclass
        clus
vv       PIGT MUTATED PIGT WILD-TYPE
  CLUS_1            3             59
  CLUS_2            1             58
  CLUS_3            1             39
  CLUS_4            2             35
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGT MUTATED        2      0      5
  PIGT WILD-TYPE    104     54     92
D494V6, multiclass
        clus
vv       PIGT MUTATED PIGT WILD-TYPE
  CLUS_1            2            104
  CLUS_2            0             54
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGT MUTATED        6      2      0
  PIGT WILD-TYPE    117     93     71
D494V7, multiclass
        clus
vv       PIGT MUTATED PIGT WILD-TYPE
  CLUS_1            6            117
  CLUS_2            2             93
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGT MUTATED        5      2      1
  PIGT WILD-TYPE    152     61     68
D494V8, multiclass
        clus
vv       PIGT MUTATED PIGT WILD-TYPE
  CLUS_1            5            152
  CLUS_2            2             61
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIGT MUTATED        0      2      4      1      1      0
  PIGT WILD-TYPE     33     17     55     38     15     45
D494V9, multiclass
        clus
vv       PIGT MUTATED PIGT WILD-TYPE
  CLUS_1            0             33
  CLUS_2            2             17
  CLUS_3            4             55
  CLUS_4            1             38
  CLUS_5            1             15
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIGT MUTATED        4      0      3      0      0      1
  PIGT WILD-TYPE     43     39     32     32     23     34
D494V10, multiclass
        clus
vv       PIGT MUTATED PIGT WILD-TYPE
  CLUS_1            4             43
  CLUS_2            0             39
  CLUS_3            3             32
  CLUS_4            0             32
  CLUS_5            0             23
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(495) Variable = SBF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SBF1 MUTATED        3     20      1      1      3
  SBF1 WILD-TYPE     76    106     26     42      9
D495V1, multiclass
        clus
vv       SBF1 MUTATED SBF1 WILD-TYPE
  CLUS_1            3             76
  CLUS_2           20            106
  CLUS_3            1             26
  CLUS_4            1             42
  CLUS_5            3              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBF1 MUTATED        2     13      3      3
  SBF1 WILD-TYPE     69     63     31     60
D495V2, multiclass
        clus
vv       SBF1 MUTATED SBF1 WILD-TYPE
  CLUS_1            2             69
  CLUS_2           13             63
  CLUS_3            3             31
  CLUS_4            3             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SBF1 MUTATED        2      9      4      2      6
  SBF1 WILD-TYPE     14     53     47     63     49
D495V3, multiclass
        clus
vv       SBF1 MUTATED SBF1 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            9             53
  CLUS_3            4             47
  CLUS_4            2             63
  CLUS_5            6             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SBF1 MUTATED        7      6      7      3
  SBF1 WILD-TYPE     91     38     43     54
D495V4, multiclass
        clus
vv       SBF1 MUTATED SBF1 WILD-TYPE
  CLUS_1            7             91
  CLUS_2            6             38
  CLUS_3            7             43
  CLUS_4            3             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SBF1 MUTATED       12      2      4      5      3
  SBF1 WILD-TYPE     50     57     36     32     56
D495V5, multiclass
        clus
vv       SBF1 MUTATED SBF1 WILD-TYPE
  CLUS_1           12             50
  CLUS_2            2             57
  CLUS_3            4             36
  CLUS_4            5             32
  CLUS_5            3             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SBF1 MUTATED        8      1     17
  SBF1 WILD-TYPE     98     53     80
D495V6, multiclass
        clus
vv       SBF1 MUTATED SBF1 WILD-TYPE
  CLUS_1            8             98
  CLUS_2            1             53
  CLUS_3           17             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SBF1 MUTATED       19      5      4
  SBF1 WILD-TYPE    104     90     67
D495V7, multiclass
        clus
vv       SBF1 MUTATED SBF1 WILD-TYPE
  CLUS_1           19            104
  CLUS_2            5             90
  CLUS_3            4             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SBF1 MUTATED       22      2      4
  SBF1 WILD-TYPE    135     61     65
D495V8, multiclass
        clus
vv       SBF1 MUTATED SBF1 WILD-TYPE
  CLUS_1           22            135
  CLUS_2            2             61
  CLUS_3            4             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SBF1 MUTATED        4      3      4      6      0      1
  SBF1 WILD-TYPE     29     16     55     33     16     44
D495V9, multiclass
        clus
vv       SBF1 MUTATED SBF1 WILD-TYPE
  CLUS_1            4             29
  CLUS_2            3             16
  CLUS_3            4             55
  CLUS_4            6             33
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SBF1 MUTATED        6      1      3      2      5      1
  SBF1 WILD-TYPE     41     38     32     30     18     34
D495V10, multiclass
        clus
vv       SBF1 MUTATED SBF1 WILD-TYPE
  CLUS_1            6             41
  CLUS_2            1             38
  CLUS_3            3             32
  CLUS_4            2             30
  CLUS_5            5             18
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(496) Variable = SIK1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIK1 MUTATED        0      5      0      0      0
  SIK1 WILD-TYPE     79    121     27     43     12
D496V1, multiclass
        clus
vv       SIK1 MUTATED SIK1 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            5            121
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIK1 MUTATED        0      3      1      1
  SIK1 WILD-TYPE     71     73     33     62
D496V2, multiclass
        clus
vv       SIK1 MUTATED SIK1 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            3             73
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIK1 MUTATED        0      0      0      1      3
  SIK1 WILD-TYPE     16     62     51     64     52
D496V3, multiclass
        clus
vv       SIK1 MUTATED SIK1 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            0             62
  CLUS_3            0             51
  CLUS_4            1             64
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIK1 MUTATED        1      1      0      2
  SIK1 WILD-TYPE     97     43     50     55
D496V4, multiclass
        clus
vv       SIK1 MUTATED SIK1 WILD-TYPE
  CLUS_1            1             97
  CLUS_2            1             43
  CLUS_3            0             50
  CLUS_4            2             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIK1 MUTATED        2      1      1      1      0
  SIK1 WILD-TYPE     60     58     39     36     59
D496V5, multiclass
        clus
vv       SIK1 MUTATED SIK1 WILD-TYPE
  CLUS_1            2             60
  CLUS_2            1             58
  CLUS_3            1             39
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SIK1 MUTATED        1      1      3
  SIK1 WILD-TYPE    105     53     94
D496V6, multiclass
        clus
vv       SIK1 MUTATED SIK1 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            1             53
  CLUS_3            3             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SIK1 MUTATED        4      1      0
  SIK1 WILD-TYPE    119     94     71
D496V7, multiclass
        clus
vv       SIK1 MUTATED SIK1 WILD-TYPE
  CLUS_1            4            119
  CLUS_2            1             94
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SIK1 MUTATED        4      1      0
  SIK1 WILD-TYPE    153     62     69
D496V8, multiclass
        clus
vv       SIK1 MUTATED SIK1 WILD-TYPE
  CLUS_1            4            153
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SIK1 MUTATED        0      1      2      1      0      1
  SIK1 WILD-TYPE     33     18     57     38     16     44
D496V9, multiclass
        clus
vv       SIK1 MUTATED SIK1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             18
  CLUS_3            2             57
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SIK1 MUTATED        1      1      1      1      1      0
  SIK1 WILD-TYPE     46     38     34     31     22     35
D496V10, multiclass
        clus
vv       SIK1 MUTATED SIK1 WILD-TYPE
  CLUS_1            1             46
  CLUS_2            1             38
  CLUS_3            1             34
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(497) Variable = AGBL5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AGBL5 MUTATED        1      7      1      2      0
  AGBL5 WILD-TYPE     78    119     26     41     12
D497V1, multiclass
        clus
vv       AGBL5 MUTATED AGBL5 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             7             119
  CLUS_3             1              26
  CLUS_4             2              41
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL5 MUTATED        0      6      1      4
  AGBL5 WILD-TYPE     71     70     33     59
D497V2, multiclass
        clus
vv       AGBL5 MUTATED AGBL5 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             6              70
  CLUS_3             1              33
  CLUS_4             4              59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AGBL5 MUTATED        0      3      3      2      3
  AGBL5 WILD-TYPE     16     59     48     63     52
D497V3, multiclass
        clus
vv       AGBL5 MUTATED AGBL5 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              59
  CLUS_3             3              48
  CLUS_4             2              63
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGBL5 MUTATED        3      5      3      0
  AGBL5 WILD-TYPE     95     39     47     57
D497V4, multiclass
        clus
vv       AGBL5 MUTATED AGBL5 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             5              39
  CLUS_3             3              47
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AGBL5 MUTATED        4      1      0      3      0
  AGBL5 WILD-TYPE     58     58     40     34     59
D497V5, multiclass
        clus
vv       AGBL5 MUTATED AGBL5 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL5 MUTATED        1      1      6
  AGBL5 WILD-TYPE    105     53     91
D497V6, multiclass
        clus
vv       AGBL5 MUTATED AGBL5 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             1              53
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL5 MUTATED        9      3      0
  AGBL5 WILD-TYPE    114     92     71
D497V7, multiclass
        clus
vv       AGBL5 MUTATED AGBL5 WILD-TYPE
  CLUS_1             9             114
  CLUS_2             3              92
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGBL5 MUTATED        8      4      0
  AGBL5 WILD-TYPE    149     59     69
D497V8, multiclass
        clus
vv       AGBL5 MUTATED AGBL5 WILD-TYPE
  CLUS_1             8             149
  CLUS_2             4              59
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AGBL5 MUTATED        1      0      5      2      0      1
  AGBL5 WILD-TYPE     32     19     54     37     16     44
D497V9, multiclass
        clus
vv       AGBL5 MUTATED AGBL5 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             5              54
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AGBL5 MUTATED        2      1      4      2      0      0
  AGBL5 WILD-TYPE     45     38     31     30     23     35
D497V10, multiclass
        clus
vv       AGBL5 MUTATED AGBL5 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              38
  CLUS_3             4              31
  CLUS_4             2              30
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(498) Variable = NDST2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NDST2 MUTATED        1      6      0      0      1
  NDST2 WILD-TYPE     78    120     27     43     11
D498V1, multiclass
        clus
vv       NDST2 MUTATED NDST2 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDST2 MUTATED        0      3      1      1
  NDST2 WILD-TYPE     71     73     33     62
D498V2, multiclass
        clus
vv       NDST2 MUTATED NDST2 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             3              73
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NDST2 MUTATED        1      2      2      0      2
  NDST2 WILD-TYPE     15     60     49     65     53
D498V3, multiclass
        clus
vv       NDST2 MUTATED NDST2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              60
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDST2 MUTATED        3      4      0      0
  NDST2 WILD-TYPE     95     40     50     57
D498V4, multiclass
        clus
vv       NDST2 MUTATED NDST2 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             4              40
  CLUS_3             0              50
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NDST2 MUTATED        7      0      0      0      1
  NDST2 WILD-TYPE     55     59     40     37     58
D498V5, multiclass
        clus
vv       NDST2 MUTATED NDST2 WILD-TYPE
  CLUS_1             7              55
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             0              37
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NDST2 MUTATED        3      0      5
  NDST2 WILD-TYPE    103     54     92
D498V6, multiclass
        clus
vv       NDST2 MUTATED NDST2 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NDST2 MUTATED        6      0      2
  NDST2 WILD-TYPE    117     95     69
D498V7, multiclass
        clus
vv       NDST2 MUTATED NDST2 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             0              95
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NDST2 MUTATED        7      0      1
  NDST2 WILD-TYPE    150     63     68
D498V8, multiclass
        clus
vv       NDST2 MUTATED NDST2 WILD-TYPE
  CLUS_1             7             150
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NDST2 MUTATED        0      1      3      2      0      0
  NDST2 WILD-TYPE     33     18     56     37     16     45
D498V9, multiclass
        clus
vv       NDST2 MUTATED NDST2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              18
  CLUS_3             3              56
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NDST2 MUTATED        2      0      2      0      1      1
  NDST2 WILD-TYPE     45     39     33     32     22     34
D498V10, multiclass
        clus
vv       NDST2 MUTATED NDST2 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(499) Variable = ZDHHC5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZDHHC5 MUTATED        2      6      2      0      0
  ZDHHC5 WILD-TYPE     77    120     25     43     12
D499V1, multiclass
        clus
vv       ZDHHC5 MUTATED ZDHHC5 WILD-TYPE
  CLUS_1              2               77
  CLUS_2              6              120
  CLUS_3              2               25
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZDHHC5 MUTATED        2      4      1      2
  ZDHHC5 WILD-TYPE     69     72     33     61
D499V2, multiclass
        clus
vv       ZDHHC5 MUTATED ZDHHC5 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              4               72
  CLUS_3              1               33
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZDHHC5 MUTATED        1      2      2      0      4
  ZDHHC5 WILD-TYPE     15     60     49     65     51
D499V3, multiclass
        clus
vv       ZDHHC5 MUTATED ZDHHC5 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              2               60
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              4               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZDHHC5 MUTATED        3      4      2      0
  ZDHHC5 WILD-TYPE     95     40     48     57
D499V4, multiclass
        clus
vv       ZDHHC5 MUTATED ZDHHC5 WILD-TYPE
  CLUS_1              3               95
  CLUS_2              4               40
  CLUS_3              2               48
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZDHHC5 MUTATED        4      0      2      1      2
  ZDHHC5 WILD-TYPE     58     59     38     36     57
D499V5, multiclass
        clus
vv       ZDHHC5 MUTATED ZDHHC5 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              0               59
  CLUS_3              2               38
  CLUS_4              1               36
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZDHHC5 MUTATED        3      0      6
  ZDHHC5 WILD-TYPE    103     54     91
D499V6, multiclass
        clus
vv       ZDHHC5 MUTATED ZDHHC5 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              0               54
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZDHHC5 MUTATED        7      1      2
  ZDHHC5 WILD-TYPE    116     94     69
D499V7, multiclass
        clus
vv       ZDHHC5 MUTATED ZDHHC5 WILD-TYPE
  CLUS_1              7              116
  CLUS_2              1               94
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZDHHC5 MUTATED        5      2      3
  ZDHHC5 WILD-TYPE    152     61     66
D499V8, multiclass
        clus
vv       ZDHHC5 MUTATED ZDHHC5 WILD-TYPE
  CLUS_1              5              152
  CLUS_2              2               61
  CLUS_3              3               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZDHHC5 MUTATED        3      1      3      1      0      1
  ZDHHC5 WILD-TYPE     30     18     56     38     16     44
D499V9, multiclass
        clus
vv       ZDHHC5 MUTATED ZDHHC5 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              1               18
  CLUS_3              3               56
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZDHHC5 MUTATED        3      1      3      2      0      0
  ZDHHC5 WILD-TYPE     44     38     32     30     23     35
D499V10, multiclass
        clus
vv       ZDHHC5 MUTATED ZDHHC5 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              1               38
  CLUS_3              3               32
  CLUS_4              2               30
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(500) Variable = GFOD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GFOD1 MUTATED        1      9      2      1      0
  GFOD1 WILD-TYPE     78    117     25     42     12
D500V1, multiclass
        clus
vv       GFOD1 MUTATED GFOD1 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             9             117
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GFOD1 MUTATED        1      4      1      3
  GFOD1 WILD-TYPE     70     72     33     60
D500V2, multiclass
        clus
vv       GFOD1 MUTATED GFOD1 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             4              72
  CLUS_3             1              33
  CLUS_4             3              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GFOD1 MUTATED        2      6      0      1      3
  GFOD1 WILD-TYPE     14     56     51     64     52
D500V3, multiclass
        clus
vv       GFOD1 MUTATED GFOD1 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             6              56
  CLUS_3             0              51
  CLUS_4             1              64
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GFOD1 MUTATED        2      5      5      0
  GFOD1 WILD-TYPE     96     39     45     57
D500V4, multiclass
        clus
vv       GFOD1 MUTATED GFOD1 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             5              39
  CLUS_3             5              45
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GFOD1 MUTATED        7      2      1      2      1
  GFOD1 WILD-TYPE     55     57     39     35     58
D500V5, multiclass
        clus
vv       GFOD1 MUTATED GFOD1 WILD-TYPE
  CLUS_1             7              55
  CLUS_2             2              57
  CLUS_3             1              39
  CLUS_4             2              35
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GFOD1 MUTATED        4      1      8
  GFOD1 WILD-TYPE    102     53     89
D500V6, multiclass
        clus
vv       GFOD1 MUTATED GFOD1 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             1              53
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GFOD1 MUTATED       10      1      2
  GFOD1 WILD-TYPE    113     94     69
D500V7, multiclass
        clus
vv       GFOD1 MUTATED GFOD1 WILD-TYPE
  CLUS_1            10             113
  CLUS_2             1              94
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GFOD1 MUTATED       11      1      1
  GFOD1 WILD-TYPE    146     62     68
D500V8, multiclass
        clus
vv       GFOD1 MUTATED GFOD1 WILD-TYPE
  CLUS_1            11             146
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GFOD1 MUTATED        0      1      5      2      0      1
  GFOD1 WILD-TYPE     33     18     54     37     16     44
D500V9, multiclass
        clus
vv       GFOD1 MUTATED GFOD1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              18
  CLUS_3             5              54
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GFOD1 MUTATED        2      1      5      1      0      0
  GFOD1 WILD-TYPE     45     38     30     31     23     35
D500V10, multiclass
        clus
vv       GFOD1 MUTATED GFOD1 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              38
  CLUS_3             5              30
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(501) Variable = KIAA1462 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1462 MUTATED        4     13      0      4      1
  KIAA1462 WILD-TYPE     75    113     27     39     11
D501V1, multiclass
        clus
vv       KIAA1462 MUTATED KIAA1462 WILD-TYPE
  CLUS_1                4                 75
  CLUS_2               13                113
  CLUS_3                0                 27
  CLUS_4                4                 39
  CLUS_5                1                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1462 MUTATED        4     10      0      3
  KIAA1462 WILD-TYPE     67     66     34     60
D501V2, multiclass
        clus
vv       KIAA1462 MUTATED KIAA1462 WILD-TYPE
  CLUS_1                4                 67
  CLUS_2               10                 66
  CLUS_3                0                 34
  CLUS_4                3                 60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1462 MUTATED        1      6      4      2      7
  KIAA1462 WILD-TYPE     15     56     47     63     48
D501V3, multiclass
        clus
vv       KIAA1462 MUTATED KIAA1462 WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                6                 56
  CLUS_3                4                 47
  CLUS_4                2                 63
  CLUS_5                7                 48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1462 MUTATED        7      7      4      2
  KIAA1462 WILD-TYPE     91     37     46     55
D501V4, multiclass
        clus
vv       KIAA1462 MUTATED KIAA1462 WILD-TYPE
  CLUS_1                7                 91
  CLUS_2                7                 37
  CLUS_3                4                 46
  CLUS_4                2                 55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1462 MUTATED        8      2      1      3      3
  KIAA1462 WILD-TYPE     54     57     39     34     56
D501V5, multiclass
        clus
vv       KIAA1462 MUTATED KIAA1462 WILD-TYPE
  CLUS_1                8                 54
  CLUS_2                2                 57
  CLUS_3                1                 39
  CLUS_4                3                 34
  CLUS_5                3                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1462 MUTATED        4      2     11
  KIAA1462 WILD-TYPE    102     52     86
D501V6, multiclass
        clus
vv       KIAA1462 MUTATED KIAA1462 WILD-TYPE
  CLUS_1                4                102
  CLUS_2                2                 52
  CLUS_3               11                 86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1462 MUTATED       15      2      5
  KIAA1462 WILD-TYPE    108     93     66
D501V7, multiclass
        clus
vv       KIAA1462 MUTATED KIAA1462 WILD-TYPE
  CLUS_1               15                108
  CLUS_2                2                 93
  CLUS_3                5                 66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1462 MUTATED       16      2      4
  KIAA1462 WILD-TYPE    141     61     65
D501V8, multiclass
        clus
vv       KIAA1462 MUTATED KIAA1462 WILD-TYPE
  CLUS_1               16                141
  CLUS_2                2                 61
  CLUS_3                4                 65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1462 MUTATED        3      2      4      5      1      1
  KIAA1462 WILD-TYPE     30     17     55     34     15     44
D501V9, multiclass
        clus
vv       KIAA1462 MUTATED KIAA1462 WILD-TYPE
  CLUS_1                3                 30
  CLUS_2                2                 17
  CLUS_3                4                 55
  CLUS_4                5                 34
  CLUS_5                1                 15
  CLUS_6                1                 44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1462 MUTATED        7      1      3      2      0      3
  KIAA1462 WILD-TYPE     40     38     32     30     23     32
D501V10, multiclass
        clus
vv       KIAA1462 MUTATED KIAA1462 WILD-TYPE
  CLUS_1                7                 40
  CLUS_2                1                 38
  CLUS_3                3                 32
  CLUS_4                2                 30
  CLUS_5                0                 23
  CLUS_6                3                 32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(502) Variable = OGFRL1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OGFRL1 MUTATED        1      7      1      0      1
  OGFRL1 WILD-TYPE     78    119     26     43     11
D502V1, multiclass
        clus
vv       OGFRL1 MUTATED OGFRL1 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              7              119
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OGFRL1 MUTATED        1      4      1      0
  OGFRL1 WILD-TYPE     70     72     33     63
D502V2, multiclass
        clus
vv       OGFRL1 MUTATED OGFRL1 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              4               72
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OGFRL1 MUTATED        0      7      2      0      0
  OGFRL1 WILD-TYPE     16     55     49     65     55
D502V3, multiclass
        clus
vv       OGFRL1 MUTATED OGFRL1 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              7               55
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              0               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OGFRL1 MUTATED        1      4      4      0
  OGFRL1 WILD-TYPE     97     40     46     57
D502V4, multiclass
        clus
vv       OGFRL1 MUTATED OGFRL1 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              4               40
  CLUS_3              4               46
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OGFRL1 MUTATED        6      0      1      2      1
  OGFRL1 WILD-TYPE     56     59     39     35     58
D502V5, multiclass
        clus
vv       OGFRL1 MUTATED OGFRL1 WILD-TYPE
  CLUS_1              6               56
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              2               35
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OGFRL1 MUTATED        2      0      8
  OGFRL1 WILD-TYPE    104     54     89
D502V6, multiclass
        clus
vv       OGFRL1 MUTATED OGFRL1 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              0               54
  CLUS_3              8               89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OGFRL1 MUTATED        9      0      1
  OGFRL1 WILD-TYPE    114     95     70
D502V7, multiclass
        clus
vv       OGFRL1 MUTATED OGFRL1 WILD-TYPE
  CLUS_1              9              114
  CLUS_2              0               95
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OGFRL1 MUTATED        9      0      1
  OGFRL1 WILD-TYPE    148     63     68
D502V8, multiclass
        clus
vv       OGFRL1 MUTATED OGFRL1 WILD-TYPE
  CLUS_1              9              148
  CLUS_2              0               63
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OGFRL1 MUTATED        1      1      2      2      0      0
  OGFRL1 WILD-TYPE     32     18     57     37     16     45
D502V9, multiclass
        clus
vv       OGFRL1 MUTATED OGFRL1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OGFRL1 MUTATED        2      0      1      1      1      1
  OGFRL1 WILD-TYPE     45     39     34     31     22     34
D502V10, multiclass
        clus
vv       OGFRL1 MUTATED OGFRL1 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(503) Variable = ZNF367 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF367 MUTATED        0      3      1      0      0
  ZNF367 WILD-TYPE     79    123     26     43     12
D503V1, multiclass
        clus
vv       ZNF367 MUTATED ZNF367 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              3              123
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF367 MUTATED        0      3      0      0
  ZNF367 WILD-TYPE     71     73     34     63
D503V2, multiclass
        clus
vv       ZNF367 MUTATED ZNF367 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              3               73
  CLUS_3              0               34
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF367 MUTATED        0      1      2      0      1
  ZNF367 WILD-TYPE     16     61     49     65     54
D503V3, multiclass
        clus
vv       ZNF367 MUTATED ZNF367 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              1               61
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF367 MUTATED        1      3      0      0
  ZNF367 WILD-TYPE     97     41     50     57
D503V4, multiclass
        clus
vv       ZNF367 MUTATED ZNF367 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              3               41
  CLUS_3              0               50
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF367 MUTATED        2      1      0      1      0
  ZNF367 WILD-TYPE     60     58     40     36     59
D503V5, multiclass
        clus
vv       ZNF367 MUTATED ZNF367 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF367 MUTATED        0      1      3
  ZNF367 WILD-TYPE    106     53     94
D503V6, multiclass
        clus
vv       ZNF367 MUTATED ZNF367 WILD-TYPE
  CLUS_1              0              106
  CLUS_2              1               53
  CLUS_3              3               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF367 MUTATED        3      1      0
  ZNF367 WILD-TYPE    120     94     71
D503V7, multiclass
        clus
vv       ZNF367 MUTATED ZNF367 WILD-TYPE
  CLUS_1              3              120
  CLUS_2              1               94
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF367 MUTATED        3      1      0
  ZNF367 WILD-TYPE    154     62     69
D503V8, multiclass
        clus
vv       ZNF367 MUTATED ZNF367 WILD-TYPE
  CLUS_1              3              154
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF367 MUTATED        0      1      0      1      0      1
  ZNF367 WILD-TYPE     33     18     59     38     16     44
D503V9, multiclass
        clus
vv       ZNF367 MUTATED ZNF367 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               18
  CLUS_3              0               59
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF367 MUTATED        1      1      0      0      1      0
  ZNF367 WILD-TYPE     46     38     35     32     22     35
D503V10, multiclass
        clus
vv       ZNF367 MUTATED ZNF367 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              1               38
  CLUS_3              0               35
  CLUS_4              0               32
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(504) Variable = PHF20 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF20 MUTATED        2      7      1      1      0
  PHF20 WILD-TYPE     77    119     26     42     12
D504V1, multiclass
        clus
vv       PHF20 MUTATED PHF20 WILD-TYPE
  CLUS_1             2              77
  CLUS_2             7             119
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF20 MUTATED        1      3      1      3
  PHF20 WILD-TYPE     70     73     33     60
D504V2, multiclass
        clus
vv       PHF20 MUTATED PHF20 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             3              73
  CLUS_3             1              33
  CLUS_4             3              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF20 MUTATED        1      2      2      1      3
  PHF20 WILD-TYPE     15     60     49     64     52
D504V3, multiclass
        clus
vv       PHF20 MUTATED PHF20 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              60
  CLUS_3             2              49
  CLUS_4             1              64
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF20 MUTATED        2      5      1      1
  PHF20 WILD-TYPE     96     39     49     56
D504V4, multiclass
        clus
vv       PHF20 MUTATED PHF20 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             5              39
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF20 MUTATED        3      0      0      4      3
  PHF20 WILD-TYPE     59     59     40     33     56
D504V5, multiclass
        clus
vv       PHF20 MUTATED PHF20 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             4              33
  CLUS_5             3              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF20 MUTATED        4      0      6
  PHF20 WILD-TYPE    102     54     91
D504V6, multiclass
        clus
vv       PHF20 MUTATED PHF20 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             0              54
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF20 MUTATED        8      1      2
  PHF20 WILD-TYPE    115     94     69
D504V7, multiclass
        clus
vv       PHF20 MUTATED PHF20 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             1              94
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF20 MUTATED        9      0      2
  PHF20 WILD-TYPE    148     63     67
D504V8, multiclass
        clus
vv       PHF20 MUTATED PHF20 WILD-TYPE
  CLUS_1             9             148
  CLUS_2             0              63
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHF20 MUTATED        2      1      4      1      0      0
  PHF20 WILD-TYPE     31     18     55     38     16     45
D504V9, multiclass
        clus
vv       PHF20 MUTATED PHF20 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              18
  CLUS_3             4              55
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHF20 MUTATED        5      0      2      0      1      0
  PHF20 WILD-TYPE     42     39     33     32     22     35
D504V10, multiclass
        clus
vv       PHF20 MUTATED PHF20 WILD-TYPE
  CLUS_1             5              42
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(505) Variable = FAM186B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM186B MUTATED        0      9      1      0      0
  FAM186B WILD-TYPE     79    117     26     43     12
D505V1, multiclass
        clus
vv       FAM186B MUTATED FAM186B WILD-TYPE
  CLUS_1               0                79
  CLUS_2               9               117
  CLUS_3               1                26
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM186B MUTATED        0      5      1      0
  FAM186B WILD-TYPE     71     71     33     63
D505V2, multiclass
        clus
vv       FAM186B MUTATED FAM186B WILD-TYPE
  CLUS_1               0                71
  CLUS_2               5                71
  CLUS_3               1                33
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM186B MUTATED        0      5      0      0      3
  FAM186B WILD-TYPE     16     57     51     65     52
D505V3, multiclass
        clus
vv       FAM186B MUTATED FAM186B WILD-TYPE
  CLUS_1               0                16
  CLUS_2               5                57
  CLUS_3               0                51
  CLUS_4               0                65
  CLUS_5               3                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM186B MUTATED        0      5      3      0
  FAM186B WILD-TYPE     98     39     47     57
D505V4, multiclass
        clus
vv       FAM186B MUTATED FAM186B WILD-TYPE
  CLUS_1               0                98
  CLUS_2               5                39
  CLUS_3               3                47
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM186B MUTATED        4      0      2      3      0
  FAM186B WILD-TYPE     58     59     38     34     59
D505V5, multiclass
        clus
vv       FAM186B MUTATED FAM186B WILD-TYPE
  CLUS_1               4                58
  CLUS_2               0                59
  CLUS_3               2                38
  CLUS_4               3                34
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM186B MUTATED        2      1      6
  FAM186B WILD-TYPE    104     53     91
D505V6, multiclass
        clus
vv       FAM186B MUTATED FAM186B WILD-TYPE
  CLUS_1               2               104
  CLUS_2               1                53
  CLUS_3               6                91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM186B MUTATED        9      0      1
  FAM186B WILD-TYPE    114     95     70
D505V7, multiclass
        clus
vv       FAM186B MUTATED FAM186B WILD-TYPE
  CLUS_1               9               114
  CLUS_2               0                95
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM186B MUTATED       10      0      0
  FAM186B WILD-TYPE    147     63     69
D505V8, multiclass
        clus
vv       FAM186B MUTATED FAM186B WILD-TYPE
  CLUS_1              10               147
  CLUS_2               0                63
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM186B MUTATED        1      1      2      2      0      0
  FAM186B WILD-TYPE     32     18     57     37     16     45
D505V9, multiclass
        clus
vv       FAM186B MUTATED FAM186B WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                18
  CLUS_3               2                57
  CLUS_4               2                37
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM186B MUTATED        5      0      1      0      0      0
  FAM186B WILD-TYPE     42     39     34     32     23     35
D505V10, multiclass
        clus
vv       FAM186B MUTATED FAM186B WILD-TYPE
  CLUS_1               5                42
  CLUS_2               0                39
  CLUS_3               1                34
  CLUS_4               0                32
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(506) Variable = EPB49 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB49 MUTATED        0      6      0      2      0
  EPB49 WILD-TYPE     79    120     27     41     12
D506V1, multiclass
        clus
vv       EPB49 MUTATED EPB49 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             2              41
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPB49 MUTATED        0      3      1      1
  EPB49 WILD-TYPE     71     73     33     62
D506V2, multiclass
        clus
vv       EPB49 MUTATED EPB49 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             3              73
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB49 MUTATED        0      3      1      0      3
  EPB49 WILD-TYPE     16     59     50     65     52
D506V3, multiclass
        clus
vv       EPB49 MUTATED EPB49 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              59
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPB49 MUTATED        2      2      3      0
  EPB49 WILD-TYPE     96     42     47     57
D506V4, multiclass
        clus
vv       EPB49 MUTATED EPB49 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             2              42
  CLUS_3             3              47
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB49 MUTATED        6      1      0      1      0
  EPB49 WILD-TYPE     56     58     40     36     59
D506V5, multiclass
        clus
vv       EPB49 MUTATED EPB49 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPB49 MUTATED        2      1      5
  EPB49 WILD-TYPE    104     53     92
D506V6, multiclass
        clus
vv       EPB49 MUTATED EPB49 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              53
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPB49 MUTATED        7      1      0
  EPB49 WILD-TYPE    116     94     71
D506V7, multiclass
        clus
vv       EPB49 MUTATED EPB49 WILD-TYPE
  CLUS_1             7             116
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPB49 MUTATED        6      2      0
  EPB49 WILD-TYPE    151     61     69
D506V8, multiclass
        clus
vv       EPB49 MUTATED EPB49 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             2              61
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPB49 MUTATED        1      1      1      1      0      0
  EPB49 WILD-TYPE     32     18     58     38     16     45
D506V9, multiclass
        clus
vv       EPB49 MUTATED EPB49 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             1              58
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPB49 MUTATED        3      0      1      0      0      0
  EPB49 WILD-TYPE     44     39     34     32     23     35
D506V10, multiclass
        clus
vv       EPB49 MUTATED EPB49 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(507) Variable = MDM2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MDM2 MUTATED        0      4      0      1      0
  MDM2 WILD-TYPE     79    122     27     42     12
D507V1, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            4            122
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDM2 MUTATED        0      2      0      2
  MDM2 WILD-TYPE     71     74     34     61
D507V2, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            2             74
  CLUS_3            0             34
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MDM2 MUTATED        0      1      2      1      1
  MDM2 WILD-TYPE     16     61     49     64     54
D507V3, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            1             61
  CLUS_3            2             49
  CLUS_4            1             64
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDM2 MUTATED        1      3      0      1
  MDM2 WILD-TYPE     97     41     50     56
D507V4, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            1             97
  CLUS_2            3             41
  CLUS_3            0             50
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MDM2 MUTATED        1      1      0      1      0
  MDM2 WILD-TYPE     61     58     40     36     59
D507V5, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            1             61
  CLUS_2            1             58
  CLUS_3            0             40
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MDM2 MUTATED        0      1      2
  MDM2 WILD-TYPE    106     53     95
D507V6, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            0            106
  CLUS_2            1             53
  CLUS_3            2             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MDM2 MUTATED        4      1      0
  MDM2 WILD-TYPE    119     94     71
D507V7, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            4            119
  CLUS_2            1             94
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MDM2 MUTATED        4      1      0
  MDM2 WILD-TYPE    153     62     69
D507V8, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            4            153
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MDM2 MUTATED        0      0      1      0      0      1
  MDM2 WILD-TYPE     33     19     58     39     16     44
D507V9, multiclass
[1] "Remove cluster labels:" "MDM2 MUTATED"          
clus
  MDM2 MUTATED MDM2 WILD-TYPE 
             2            209 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6453     TCGA-BR-6454 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457     TCGA-BR-6458 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6710 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-7715     TCGA-BR-7717     TCGA-BR-7723     TCGA-BR-7851 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8077     TCGA-BR-8078 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8297 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-8360     TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370     TCGA-BR-8371 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-8372     TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8485 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8590 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J6     TCGA-BR-A4J7 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI     TCGA-BR-A4QL 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CD-8532     TCGA-CD-8534     TCGA-CD-8535     TCGA-CD-8536 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489     TCGA-CD-A48C 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CG-4437 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5717     TCGA-CG-5718 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-D7-8572     TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YY     TCGA-D7-A4Z0     TCGA-EQ-5647 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829     TCGA-FP-7998 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-FP-8631     TCGA-FP-A4BE     TCGA-HF-7132     TCGA-HF-7136 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604     TCGA-HU-8608 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC     TCGA-HU-A4GD 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GN     TCGA-HU-A4GQ 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-HU-A4GT     TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H2 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6     TCGA-HU-A4H8 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-IP-7968 
"MDM2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MDM2 MUTATED        0      1      1      0      0      0
  MDM2 WILD-TYPE     47     38     34     32     23     35
D507V10, multiclass
[1] "Remove cluster labels:" "MDM2 MUTATED"          
clus
  MDM2 MUTATED MDM2 WILD-TYPE 
             2            209 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6453     TCGA-BR-6454 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457     TCGA-BR-6458 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6710 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-7715     TCGA-BR-7717     TCGA-BR-7723     TCGA-BR-7851 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8077     TCGA-BR-8078 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8297 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-8360     TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370     TCGA-BR-8371 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-8372     TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8485 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8590 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J6     TCGA-BR-A4J7 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI     TCGA-BR-A4QL 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CD-8532     TCGA-CD-8534     TCGA-CD-8535     TCGA-CD-8536 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489     TCGA-CD-A48C 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CG-4437 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5717     TCGA-CG-5718 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-D7-8572     TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YY     TCGA-D7-A4Z0     TCGA-EQ-5647 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829     TCGA-FP-7998 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-FP-8631     TCGA-FP-A4BE     TCGA-HF-7132     TCGA-HF-7136 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604     TCGA-HU-8608 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC     TCGA-HU-A4GD 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GN     TCGA-HU-A4GQ 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-HU-A4GT     TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H2 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6     TCGA-HU-A4H8 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" "MDM2 WILD-TYPE" 
    TCGA-IP-7968 
"MDM2 WILD-TYPE" 

Clustering(508) Variable = SCN10A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCN10A MUTATED        4     16      4      4      0
  SCN10A WILD-TYPE     75    110     23     39     12
D508V1, multiclass
        clus
vv       SCN10A MUTATED SCN10A WILD-TYPE
  CLUS_1              4               75
  CLUS_2             16              110
  CLUS_3              4               23
  CLUS_4              4               39
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN10A MUTATED        6      9      5      4
  SCN10A WILD-TYPE     65     67     29     59
D508V2, multiclass
        clus
vv       SCN10A MUTATED SCN10A WILD-TYPE
  CLUS_1              6               65
  CLUS_2              9               67
  CLUS_3              5               29
  CLUS_4              4               59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCN10A MUTATED        1      6      8      4      5
  SCN10A WILD-TYPE     15     56     43     61     50
D508V3, multiclass
        clus
vv       SCN10A MUTATED SCN10A WILD-TYPE
  CLUS_1              1               15
  CLUS_2              6               56
  CLUS_3              8               43
  CLUS_4              4               61
  CLUS_5              5               50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN10A MUTATED        7      6      5      6
  SCN10A WILD-TYPE     91     38     45     51
D508V4, multiclass
        clus
vv       SCN10A MUTATED SCN10A WILD-TYPE
  CLUS_1              7               91
  CLUS_2              6               38
  CLUS_3              5               45
  CLUS_4              6               51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCN10A MUTATED       11      4      2      3      5
  SCN10A WILD-TYPE     51     55     38     34     54
D508V5, multiclass
        clus
vv       SCN10A MUTATED SCN10A WILD-TYPE
  CLUS_1             11               51
  CLUS_2              4               55
  CLUS_3              2               38
  CLUS_4              3               34
  CLUS_5              5               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCN10A MUTATED       10      3     12
  SCN10A WILD-TYPE     96     51     85
D508V6, multiclass
        clus
vv       SCN10A MUTATED SCN10A WILD-TYPE
  CLUS_1             10               96
  CLUS_2              3               51
  CLUS_3             12               85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCN10A MUTATED       17      8      3
  SCN10A WILD-TYPE    106     87     68
D508V7, multiclass
        clus
vv       SCN10A MUTATED SCN10A WILD-TYPE
  CLUS_1             17              106
  CLUS_2              8               87
  CLUS_3              3               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCN10A MUTATED       16      6      6
  SCN10A WILD-TYPE    141     57     63
D508V8, multiclass
        clus
vv       SCN10A MUTATED SCN10A WILD-TYPE
  CLUS_1             16              141
  CLUS_2              6               57
  CLUS_3              6               63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SCN10A MUTATED        4      4      7      3      1      2
  SCN10A WILD-TYPE     29     15     52     36     15     43
D508V9, multiclass
        clus
vv       SCN10A MUTATED SCN10A WILD-TYPE
  CLUS_1              4               29
  CLUS_2              4               15
  CLUS_3              7               52
  CLUS_4              3               36
  CLUS_5              1               15
  CLUS_6              2               43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SCN10A MUTATED        5      2      6      2      3      3
  SCN10A WILD-TYPE     42     37     29     30     20     32
D508V10, multiclass
        clus
vv       SCN10A MUTATED SCN10A WILD-TYPE
  CLUS_1              5               42
  CLUS_2              2               37
  CLUS_3              6               29
  CLUS_4              2               30
  CLUS_5              3               20
  CLUS_6              3               32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(509) Variable = SERPINA1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINA1 MUTATED        0      6      1      0      0
  SERPINA1 WILD-TYPE     79    120     26     43     12
D509V1, multiclass
        clus
vv       SERPINA1 MUTATED SERPINA1 WILD-TYPE
  CLUS_1                0                 79
  CLUS_2                6                120
  CLUS_3                1                 26
  CLUS_4                0                 43
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINA1 MUTATED        1      1      0      1
  SERPINA1 WILD-TYPE     70     75     34     62
D509V2, multiclass
        clus
vv       SERPINA1 MUTATED SERPINA1 WILD-TYPE
  CLUS_1                1                 70
  CLUS_2                1                 75
  CLUS_3                0                 34
  CLUS_4                1                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINA1 MUTATED        1      2      1      1      2
  SERPINA1 WILD-TYPE     15     60     50     64     53
D509V3, multiclass
        clus
vv       SERPINA1 MUTATED SERPINA1 WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                2                 60
  CLUS_3                1                 50
  CLUS_4                1                 64
  CLUS_5                2                 53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINA1 MUTATED        2      3      0      2
  SERPINA1 WILD-TYPE     96     41     50     55
D509V4, multiclass
        clus
vv       SERPINA1 MUTATED SERPINA1 WILD-TYPE
  CLUS_1                2                 96
  CLUS_2                3                 41
  CLUS_3                0                 50
  CLUS_4                2                 55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINA1 MUTATED        2      1      0      3      0
  SERPINA1 WILD-TYPE     60     58     40     34     59
D509V5, multiclass
        clus
vv       SERPINA1 MUTATED SERPINA1 WILD-TYPE
  CLUS_1                2                 60
  CLUS_2                1                 58
  CLUS_3                0                 40
  CLUS_4                3                 34
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINA1 MUTATED        1      2      3
  SERPINA1 WILD-TYPE    105     52     94
D509V6, multiclass
        clus
vv       SERPINA1 MUTATED SERPINA1 WILD-TYPE
  CLUS_1                1                105
  CLUS_2                2                 52
  CLUS_3                3                 94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINA1 MUTATED        4      2      1
  SERPINA1 WILD-TYPE    119     93     70
D509V7, multiclass
        clus
vv       SERPINA1 MUTATED SERPINA1 WILD-TYPE
  CLUS_1                4                119
  CLUS_2                2                 93
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINA1 MUTATED        5      2      0
  SERPINA1 WILD-TYPE    152     61     69
D509V8, multiclass
        clus
vv       SERPINA1 MUTATED SERPINA1 WILD-TYPE
  CLUS_1                5                152
  CLUS_2                2                 61
  CLUS_3                0                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SERPINA1 MUTATED        0      0      1      1      0      1
  SERPINA1 WILD-TYPE     33     19     58     38     16     44
D509V9, multiclass
        clus
vv       SERPINA1 MUTATED SERPINA1 WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                0                 19
  CLUS_3                1                 58
  CLUS_4                1                 38
  CLUS_5                0                 16
  CLUS_6                1                 44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SERPINA1 MUTATED        1      0      1      0      1      0
  SERPINA1 WILD-TYPE     46     39     34     32     22     35
D509V10, multiclass
        clus
vv       SERPINA1 MUTATED SERPINA1 WILD-TYPE
  CLUS_1                1                 46
  CLUS_2                0                 39
  CLUS_3                1                 34
  CLUS_4                0                 32
  CLUS_5                1                 22
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(510) Variable = LARP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP1 MUTATED        1      7      1      0      0
  LARP1 WILD-TYPE     78    119     26     43     12
D510V1, multiclass
        clus
vv       LARP1 MUTATED LARP1 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             7             119
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP1 MUTATED        0      4      2      0
  LARP1 WILD-TYPE     71     72     32     63
D510V2, multiclass
        clus
vv       LARP1 MUTATED LARP1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             4              72
  CLUS_3             2              32
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP1 MUTATED        2      1      1      0      4
  LARP1 WILD-TYPE     14     61     50     65     51
D510V3, multiclass
        clus
vv       LARP1 MUTATED LARP1 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             1              61
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP1 MUTATED        4      3      1      0
  LARP1 WILD-TYPE     94     41     49     57
D510V4, multiclass
        clus
vv       LARP1 MUTATED LARP1 WILD-TYPE
  CLUS_1             4              94
  CLUS_2             3              41
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP1 MUTATED        4      1      3      0      1
  LARP1 WILD-TYPE     58     58     37     37     58
D510V5, multiclass
        clus
vv       LARP1 MUTATED LARP1 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             1              58
  CLUS_3             3              37
  CLUS_4             0              37
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LARP1 MUTATED        3      0      6
  LARP1 WILD-TYPE    103     54     91
D510V6, multiclass
        clus
vv       LARP1 MUTATED LARP1 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LARP1 MUTATED        9      0      0
  LARP1 WILD-TYPE    114     95     71
D510V7, multiclass
        clus
vv       LARP1 MUTATED LARP1 WILD-TYPE
  CLUS_1             9             114
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LARP1 MUTATED        8      0      1
  LARP1 WILD-TYPE    149     63     68
D510V8, multiclass
        clus
vv       LARP1 MUTATED LARP1 WILD-TYPE
  CLUS_1             8             149
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LARP1 MUTATED        1      0      3      2      0      0
  LARP1 WILD-TYPE     32     19     56     37     16     45
D510V9, multiclass
        clus
vv       LARP1 MUTATED LARP1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             3              56
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LARP1 MUTATED        0      0      3      2      1      0
  LARP1 WILD-TYPE     47     39     32     30     22     35
D510V10, multiclass
        clus
vv       LARP1 MUTATED LARP1 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             0              39
  CLUS_3             3              32
  CLUS_4             2              30
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(511) Variable = MLH1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLH1 MUTATED        0      5      0      0      0
  MLH1 WILD-TYPE     79    121     27     43     12
D511V1, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            5            121
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLH1 MUTATED        0      2      0      2
  MLH1 WILD-TYPE     71     74     34     61
D511V2, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            2             74
  CLUS_3            0             34
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLH1 MUTATED        0      5      0      0      0
  MLH1 WILD-TYPE     16     57     51     65     55
D511V3, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            5             57
  CLUS_3            0             51
  CLUS_4            0             65
  CLUS_5            0             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLH1 MUTATED        0      0      5      0
  MLH1 WILD-TYPE     98     44     45     57
D511V4, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            0             98
  CLUS_2            0             44
  CLUS_3            5             45
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLH1 MUTATED        4      1      0      1      0
  MLH1 WILD-TYPE     58     58     40     36     59
D511V5, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            1             58
  CLUS_3            0             40
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLH1 MUTATED        3      0      3
  MLH1 WILD-TYPE    103     54     94
D511V6, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            3            103
  CLUS_2            0             54
  CLUS_3            3             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLH1 MUTATED        6      0      0
  MLH1 WILD-TYPE    117     95     71
D511V7, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            6            117
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLH1 MUTATED        5      1      0
  MLH1 WILD-TYPE    152     62     69
D511V8, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            5            152
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLH1 MUTATED        1      0      3      0      0      0
  MLH1 WILD-TYPE     32     19     56     39     16     45
D511V9, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             19
  CLUS_3            3             56
  CLUS_4            0             39
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLH1 MUTATED        2      0      2      0      0      0
  MLH1 WILD-TYPE     45     39     33     32     23     35
D511V10, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            2             33
  CLUS_4            0             32
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(512) Variable = MAN2B1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAN2B1 MUTATED        0     11      1      2      2
  MAN2B1 WILD-TYPE     79    115     26     41     10
D512V1, multiclass
        clus
vv       MAN2B1 MUTATED MAN2B1 WILD-TYPE
  CLUS_1              0               79
  CLUS_2             11              115
  CLUS_3              1               26
  CLUS_4              2               41
  CLUS_5              2               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAN2B1 MUTATED        0      9      2      1
  MAN2B1 WILD-TYPE     71     67     32     62
D512V2, multiclass
        clus
vv       MAN2B1 MUTATED MAN2B1 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              9               67
  CLUS_3              2               32
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAN2B1 MUTATED        2      4      3      0      4
  MAN2B1 WILD-TYPE     14     58     48     65     51
D512V3, multiclass
        clus
vv       MAN2B1 MUTATED MAN2B1 WILD-TYPE
  CLUS_1              2               14
  CLUS_2              4               58
  CLUS_3              3               48
  CLUS_4              0               65
  CLUS_5              4               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAN2B1 MUTATED        5      6      1      1
  MAN2B1 WILD-TYPE     93     38     49     56
D512V4, multiclass
        clus
vv       MAN2B1 MUTATED MAN2B1 WILD-TYPE
  CLUS_1              5               93
  CLUS_2              6               38
  CLUS_3              1               49
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAN2B1 MUTATED       10      1      1      2      0
  MAN2B1 WILD-TYPE     52     58     39     35     59
D512V5, multiclass
        clus
vv       MAN2B1 MUTATED MAN2B1 WILD-TYPE
  CLUS_1             10               52
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              2               35
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAN2B1 MUTATED        3      0     11
  MAN2B1 WILD-TYPE    103     54     86
D512V6, multiclass
        clus
vv       MAN2B1 MUTATED MAN2B1 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              0               54
  CLUS_3             11               86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAN2B1 MUTATED       14      1      1
  MAN2B1 WILD-TYPE    109     94     70
D512V7, multiclass
        clus
vv       MAN2B1 MUTATED MAN2B1 WILD-TYPE
  CLUS_1             14              109
  CLUS_2              1               94
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAN2B1 MUTATED       15      1      0
  MAN2B1 WILD-TYPE    142     62     69
D512V8, multiclass
        clus
vv       MAN2B1 MUTATED MAN2B1 WILD-TYPE
  CLUS_1             15              142
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAN2B1 MUTATED        1      0      5      4      0      1
  MAN2B1 WILD-TYPE     32     19     54     35     16     44
D512V9, multiclass
        clus
vv       MAN2B1 MUTATED MAN2B1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               19
  CLUS_3              5               54
  CLUS_4              4               35
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAN2B1 MUTATED        5      1      3      2      0      0
  MAN2B1 WILD-TYPE     42     38     32     30     23     35
D512V10, multiclass
        clus
vv       MAN2B1 MUTATED MAN2B1 WILD-TYPE
  CLUS_1              5               42
  CLUS_2              1               38
  CLUS_3              3               32
  CLUS_4              2               30
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(513) Variable = SLC7A10 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC7A10 MUTATED        0      4      0      0      0
  SLC7A10 WILD-TYPE     79    122     27     43     12
D513V1, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               4               122
  CLUS_3               0                27
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC7A10 MUTATED        0      4      0      1
  SLC7A10 WILD-TYPE     71     72     34     62
D513V2, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               4                72
  CLUS_3               0                34
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC7A10 MUTATED        1      2      0      0      1
  SLC7A10 WILD-TYPE     15     60     51     65     54
D513V3, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               2                60
  CLUS_3               0                51
  CLUS_4               0                65
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC7A10 MUTATED        2      1      1      0
  SLC7A10 WILD-TYPE     96     43     49     57
D513V4, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               2                96
  CLUS_2               1                43
  CLUS_3               1                49
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC7A10 MUTATED        3      0      1      1      0
  SLC7A10 WILD-TYPE     59     59     39     36     59
D513V5, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               3                59
  CLUS_2               0                59
  CLUS_3               1                39
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC7A10 MUTATED        1      1      3
  SLC7A10 WILD-TYPE    105     53     94
D513V6, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               1                53
  CLUS_3               3                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC7A10 MUTATED        3      1      1
  SLC7A10 WILD-TYPE    120     94     70
D513V7, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               3               120
  CLUS_2               1                94
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC7A10 MUTATED        5      0      0
  SLC7A10 WILD-TYPE    152     63     69
D513V8, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               5               152
  CLUS_2               0                63
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC7A10 MUTATED        1      0      1      3      0      0
  SLC7A10 WILD-TYPE     32     19     58     36     16     45
D513V9, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                19
  CLUS_3               1                58
  CLUS_4               3                36
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC7A10 MUTATED        2      0      1      1      1      0
  SLC7A10 WILD-TYPE     45     39     34     31     22     35
D513V10, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               2                45
  CLUS_2               0                39
  CLUS_3               1                34
  CLUS_4               1                31
  CLUS_5               1                22
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(514) Variable = RGS2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS2 MUTATED        0      2      0      1      0
  RGS2 WILD-TYPE     79    124     27     42     12
D514V1, multiclass
        clus
vv       RGS2 MUTATED RGS2 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            2            124
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS2 MUTATED        1      0      0      0
  RGS2 WILD-TYPE     70     76     34     63
D514V2, multiclass
[1] "Remove cluster labels:" "RGS2 MUTATED"          
clus
  RGS2 MUTATED RGS2 WILD-TYPE 
             1            243 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6453 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-7707     TCGA-BR-7715     TCGA-BR-7716     TCGA-BR-7717 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-7722     TCGA-BR-7723     TCGA-BR-7851     TCGA-BR-7901 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959     TCGA-BR-8058 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8059     TCGA-BR-8077     TCGA-BR-8078     TCGA-BR-8080 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8081     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8297 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8360     TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8369     TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381     TCGA-BR-8382 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8484     TCGA-BR-8485 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8589 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8677     TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8682     TCGA-BR-8683     TCGA-BR-8686     TCGA-BR-8687 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8690     TCGA-BR-A44T     TCGA-BR-A44U     TCGA-BR-A452 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR     TCGA-BR-A4CS 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY     TCGA-BR-A4IZ 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-A4J1     TCGA-BR-A4J2     TCGA-BR-A4J4     TCGA-BR-A4J6 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4PE 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-A4PF     TCGA-BR-A4QI     TCGA-BR-A4QL     TCGA-BR-A4QM 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800     TCGA-CD-5801 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804     TCGA-CD-5813 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8527 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CD-8528     TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CD-8532     TCGA-CD-8534     TCGA-CD-8535     TCGA-CD-8536 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489     TCGA-CD-A48A 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CD-A48C     TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CD-A4MJ     TCGA-CG-4437     TCGA-CG-4441     TCGA-CG-5717 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5726 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6521 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-D7-8572     TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8575 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-D7-8576     TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4YX     TCGA-D7-A4YY 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-D7-A4Z0     TCGA-EQ-5647     TCGA-EQ-8122     TCGA-EQ-A4SO 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-F1-A448 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-FP-7735     TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-FP-8631     TCGA-FP-A4BE     TCGA-FP-A4BF     TCGA-HF-7132 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-HF-7133     TCGA-HF-7136     TCGA-HJ-7597     TCGA-HU-8243 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-HU-8245     TCGA-HU-8249     TCGA-HU-8602     TCGA-HU-8604 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-HU-8608     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4G3 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-HU-A4G6     TCGA-HU-A4G8     TCGA-HU-A4G9     TCGA-HU-A4GC 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-HU-A4GD     TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GN 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GT     TCGA-HU-A4GU 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H0     TCGA-HU-A4H2 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-HU-A4H8     TCGA-HU-A4HD     TCGA-IN-7806     TCGA-IN-7808 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-IN-8462     TCGA-IN-8663     TCGA-IP-7968 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS2 MUTATED        0      0      1      0      2
  RGS2 WILD-TYPE     16     62     50     65     53
D514V3, multiclass
        clus
vv       RGS2 MUTATED RGS2 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            0             62
  CLUS_3            1             50
  CLUS_4            0             65
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS2 MUTATED        1      2      0      0
  RGS2 WILD-TYPE     97     42     50     57
D514V4, multiclass
        clus
vv       RGS2 MUTATED RGS2 WILD-TYPE
  CLUS_1            1             97
  CLUS_2            2             42
  CLUS_3            0             50
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS2 MUTATED        1      0      1      0      1
  RGS2 WILD-TYPE     61     59     39     37     58
D514V5, multiclass
        clus
vv       RGS2 MUTATED RGS2 WILD-TYPE
  CLUS_1            1             61
  CLUS_2            0             59
  CLUS_3            1             39
  CLUS_4            0             37
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RGS2 MUTATED        1      0      2
  RGS2 WILD-TYPE    105     54     95
D514V6, multiclass
        clus
vv       RGS2 MUTATED RGS2 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            2             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RGS2 MUTATED        2      1      0
  RGS2 WILD-TYPE    121     94     71
D514V7, multiclass
        clus
vv       RGS2 MUTATED RGS2 WILD-TYPE
  CLUS_1            2            121
  CLUS_2            1             94
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RGS2 MUTATED        2      0      1
  RGS2 WILD-TYPE    155     63     68
D514V8, multiclass
        clus
vv       RGS2 MUTATED RGS2 WILD-TYPE
  CLUS_1            2            155
  CLUS_2            0             63
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RGS2 MUTATED        0      0      1      0      0      0
  RGS2 WILD-TYPE     33     19     58     39     16     45
D514V9, multiclass
[1] "Remove cluster labels:" "RGS2 MUTATED"          
clus
  RGS2 MUTATED RGS2 WILD-TYPE 
             1            210 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6453 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-7707     TCGA-BR-7715     TCGA-BR-7717     TCGA-BR-7723 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-7959     TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8077 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8078     TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8289     TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8296 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8297     TCGA-BR-8360     TCGA-BR-8361     TCGA-BR-8363 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8364     TCGA-BR-8365     TCGA-BR-8368     TCGA-BR-8369 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8380     TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8483     TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8487 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8588     TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8592 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8676     TCGA-BR-8677     TCGA-BR-8678     TCGA-BR-8679 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8680     TCGA-BR-8682     TCGA-BR-8683     TCGA-BR-8687 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8690     TCGA-BR-A44T     TCGA-BR-A452     TCGA-BR-A453 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-A4CQ     TCGA-BR-A4CR     TCGA-BR-A4CS     TCGA-BR-A4IU 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-A4IV     TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-A4QI     TCGA-BR-A4QL     TCGA-BR-A4QM     TCGA-CD-5798 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CD-5799     TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CD-5803     TCGA-CD-5804     TCGA-CD-5813     TCGA-CD-8524 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8527     TCGA-CD-8529 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8534 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CD-A489     TCGA-CD-A48C     TCGA-CD-A4MG     TCGA-CD-A4MH 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CD-A4MI     TCGA-CG-4437     TCGA-CG-4441     TCGA-CG-4449 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-D7-8570     TCGA-D7-8572     TCGA-D7-8574     TCGA-D7-8575 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-D7-8576     TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4YY     TCGA-D7-A4Z0 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-EQ-5647     TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-FP-7998     TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-FP-8211     TCGA-FP-8631     TCGA-FP-A4BE     TCGA-HF-7132 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-HF-7136     TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-HU-8608     TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-HU-A4GD     TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GN 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-HU-A4GQ     TCGA-HU-A4GT     TCGA-HU-A4GX     TCGA-HU-A4GY 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-HU-A4H2     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-HU-A4H8     TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-IN-8663     TCGA-IP-7968 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RGS2 MUTATED        0      0      1      0      0      0
  RGS2 WILD-TYPE     47     39     34     32     23     35
D514V10, multiclass
[1] "Remove cluster labels:" "RGS2 MUTATED"          
clus
  RGS2 MUTATED RGS2 WILD-TYPE 
             1            210 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6453 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-7707     TCGA-BR-7715     TCGA-BR-7717     TCGA-BR-7723 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-7959     TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8077 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8078     TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8289     TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8296 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8297     TCGA-BR-8360     TCGA-BR-8361     TCGA-BR-8363 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8364     TCGA-BR-8365     TCGA-BR-8368     TCGA-BR-8369 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8380     TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8483     TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8487 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8588     TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8592 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8676     TCGA-BR-8677     TCGA-BR-8678     TCGA-BR-8679 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8680     TCGA-BR-8682     TCGA-BR-8683     TCGA-BR-8687 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-8690     TCGA-BR-A44T     TCGA-BR-A452     TCGA-BR-A453 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-A4CQ     TCGA-BR-A4CR     TCGA-BR-A4CS     TCGA-BR-A4IU 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-A4IV     TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-BR-A4QI     TCGA-BR-A4QL     TCGA-BR-A4QM     TCGA-CD-5798 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CD-5799     TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CD-5803     TCGA-CD-5804     TCGA-CD-5813     TCGA-CD-8524 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8527     TCGA-CD-8529 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8534 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CD-A489     TCGA-CD-A48C     TCGA-CD-A4MG     TCGA-CD-A4MH 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CD-A4MI     TCGA-CG-4437     TCGA-CG-4441     TCGA-CG-4449 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-D7-8570     TCGA-D7-8572     TCGA-D7-8574     TCGA-D7-8575 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-D7-8576     TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4YY     TCGA-D7-A4Z0 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-EQ-5647     TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-FP-7998     TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-FP-8211     TCGA-FP-8631     TCGA-FP-A4BE     TCGA-HF-7132 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-HF-7136     TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-HU-8608     TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-HU-A4GD     TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GN 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-HU-A4GQ     TCGA-HU-A4GT     TCGA-HU-A4GX     TCGA-HU-A4GY 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-HU-A4H2     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-HU-A4H8     TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 
    TCGA-IN-8663     TCGA-IP-7968 
"RGS2 WILD-TYPE" "RGS2 WILD-TYPE" 

Clustering(515) Variable = EAF2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EAF2 MUTATED        0      4      0      1      2
  EAF2 WILD-TYPE     79    122     27     42     10
D515V1, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            4            122
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            2             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EAF2 MUTATED        0      5      0      0
  EAF2 WILD-TYPE     71     71     34     63
D515V2, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            5             71
  CLUS_3            0             34
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EAF2 MUTATED        0      1      1      1      2
  EAF2 WILD-TYPE     16     61     50     64     53
D515V3, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            1             61
  CLUS_3            1             50
  CLUS_4            1             64
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EAF2 MUTATED        1      2      1      1
  EAF2 WILD-TYPE     97     42     49     56
D515V4, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            1             97
  CLUS_2            2             42
  CLUS_3            1             49
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EAF2 MUTATED        4      1      1      0      0
  EAF2 WILD-TYPE     58     58     39     37     59
D515V5, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            1             58
  CLUS_3            1             39
  CLUS_4            0             37
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EAF2 MUTATED        1      0      5
  EAF2 WILD-TYPE    105     54     92
D515V6, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EAF2 MUTATED        6      1      0
  EAF2 WILD-TYPE    117     94     71
D515V7, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            6            117
  CLUS_2            1             94
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EAF2 MUTATED        7      0      0
  EAF2 WILD-TYPE    150     63     69
D515V8, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            7            150
  CLUS_2            0             63
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EAF2 MUTATED        1      1      1      1      0      0
  EAF2 WILD-TYPE     32     18     58     38     16     45
D515V9, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            1             58
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EAF2 MUTATED        2      0      1      0      1      0
  EAF2 WILD-TYPE     45     39     34     32     22     35
D515V10, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            0             32
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(516) Variable = FAM82A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM82A1 MUTATED        0      3      1      0      0
  FAM82A1 WILD-TYPE     79    123     26     43     12
D516V1, multiclass
        clus
vv       FAM82A1 MUTATED FAM82A1 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               3               123
  CLUS_3               1                26
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM82A1 MUTATED        0      1      0      1
  FAM82A1 WILD-TYPE     71     75     34     62
D516V2, multiclass
[1] "Remove cluster labels:" "FAM82A1 MUTATED"       
clus
  FAM82A1 MUTATED FAM82A1 WILD-TYPE 
                2               242 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6453 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-7707        TCGA-BR-7715        TCGA-BR-7716        TCGA-BR-7717 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-7722        TCGA-BR-7723        TCGA-BR-7851        TCGA-BR-7901 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-7957        TCGA-BR-7958        TCGA-BR-7959        TCGA-BR-8058 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8059        TCGA-BR-8077        TCGA-BR-8078        TCGA-BR-8080 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8081        TCGA-BR-8284        TCGA-BR-8286        TCGA-BR-8289 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8296        TCGA-BR-8297 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8360        TCGA-BR-8361        TCGA-BR-8363        TCGA-BR-8364 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8365        TCGA-BR-8366        TCGA-BR-8367        TCGA-BR-8368 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8369        TCGA-BR-8370        TCGA-BR-8371        TCGA-BR-8372 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8373        TCGA-BR-8380        TCGA-BR-8381        TCGA-BR-8382 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8384        TCGA-BR-8483        TCGA-BR-8484        TCGA-BR-8485 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8486        TCGA-BR-8487        TCGA-BR-8588        TCGA-BR-8589 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8680 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8686        TCGA-BR-8687 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8690        TCGA-BR-A44T        TCGA-BR-A44U        TCGA-BR-A452 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-A453        TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-A4IU        TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-A4J1        TCGA-BR-A4J2        TCGA-BR-A4J4        TCGA-BR-A4J6 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4PE 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-A4PF        TCGA-BR-A4QI        TCGA-BR-A4QL        TCGA-BR-A4QM 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CD-5798        TCGA-CD-5799        TCGA-CD-5800        TCGA-CD-5801 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CD-5802        TCGA-CD-5803        TCGA-CD-5804        TCGA-CD-5813 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CD-8524        TCGA-CD-8525        TCGA-CD-8526        TCGA-CD-8527 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CD-8528        TCGA-CD-8529        TCGA-CD-8530        TCGA-CD-8531 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CD-8532        TCGA-CD-8534        TCGA-CD-8535        TCGA-CD-8536 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CD-A486        TCGA-CD-A487        TCGA-CD-A489        TCGA-CD-A48A 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CD-A48C        TCGA-CD-A4MG        TCGA-CD-A4MH        TCGA-CD-A4MI 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CD-A4MJ        TCGA-CG-4437        TCGA-CG-4441        TCGA-CG-5717 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5722 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5727        TCGA-CG-5728 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-D7-8570        TCGA-D7-8572 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-D7-8573        TCGA-D7-8574        TCGA-D7-8575        TCGA-D7-8576 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-D7-8578        TCGA-D7-8579        TCGA-D7-A4YT        TCGA-D7-A4YU 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-D7-A4YV        TCGA-D7-A4YX        TCGA-D7-A4YY        TCGA-D7-A4Z0 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-EQ-5647        TCGA-EQ-8122        TCGA-EQ-A4SO        TCGA-F1-6177 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-F1-6874        TCGA-F1-6875        TCGA-F1-A448        TCGA-FP-7735 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-FP-7829        TCGA-FP-7916        TCGA-FP-7998        TCGA-FP-8099 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-FP-8209        TCGA-FP-8210        TCGA-FP-8211        TCGA-FP-8631 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-FP-A4BE        TCGA-FP-A4BF        TCGA-HF-7132        TCGA-HF-7133 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-HF-7136        TCGA-HJ-7597        TCGA-HU-8243        TCGA-HU-8245 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-HU-8249        TCGA-HU-8602        TCGA-HU-8604        TCGA-HU-8608 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-HU-8610        TCGA-HU-A4G2        TCGA-HU-A4G3        TCGA-HU-A4G6 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-HU-A4G8        TCGA-HU-A4G9        TCGA-HU-A4GC        TCGA-HU-A4GD 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GN        TCGA-HU-A4GP 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-HU-A4GQ        TCGA-HU-A4GT        TCGA-HU-A4GU        TCGA-HU-A4GX 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-HU-A4GY        TCGA-HU-A4H0        TCGA-HU-A4H2        TCGA-HU-A4H3 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4H6        TCGA-HU-A4H8 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-HU-A4HD        TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-IN-8663        TCGA-IP-7968 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM82A1 MUTATED        2      0      0      0      2
  FAM82A1 WILD-TYPE     14     62     51     65     53
D516V3, multiclass
        clus
vv       FAM82A1 MUTATED FAM82A1 WILD-TYPE
  CLUS_1               2                14
  CLUS_2               0                62
  CLUS_3               0                51
  CLUS_4               0                65
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM82A1 MUTATED        3      1      0      0
  FAM82A1 WILD-TYPE     95     43     50     57
D516V4, multiclass
        clus
vv       FAM82A1 MUTATED FAM82A1 WILD-TYPE
  CLUS_1               3                95
  CLUS_2               1                43
  CLUS_3               0                50
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM82A1 MUTATED        2      0      2      0      0
  FAM82A1 WILD-TYPE     60     59     38     37     59
D516V5, multiclass
        clus
vv       FAM82A1 MUTATED FAM82A1 WILD-TYPE
  CLUS_1               2                60
  CLUS_2               0                59
  CLUS_3               2                38
  CLUS_4               0                37
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM82A1 MUTATED        1      0      3
  FAM82A1 WILD-TYPE    105     54     94
D516V6, multiclass
        clus
vv       FAM82A1 MUTATED FAM82A1 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               0                54
  CLUS_3               3                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM82A1 MUTATED        4      0      0
  FAM82A1 WILD-TYPE    119     95     71
D516V7, multiclass
        clus
vv       FAM82A1 MUTATED FAM82A1 WILD-TYPE
  CLUS_1               4               119
  CLUS_2               0                95
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM82A1 MUTATED        3      0      1
  FAM82A1 WILD-TYPE    154     63     68
D516V8, multiclass
        clus
vv       FAM82A1 MUTATED FAM82A1 WILD-TYPE
  CLUS_1               3               154
  CLUS_2               0                63
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM82A1 MUTATED        0      0      2      0      0      0
  FAM82A1 WILD-TYPE     33     19     57     39     16     45
D516V9, multiclass
[1] "Remove cluster labels:" "FAM82A1 MUTATED"       
clus
  FAM82A1 MUTATED FAM82A1 WILD-TYPE 
                2               209 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6453 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-7707        TCGA-BR-7715        TCGA-BR-7717        TCGA-BR-7723 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7958 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8077 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8078        TCGA-BR-8080        TCGA-BR-8284        TCGA-BR-8286 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8289        TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8296 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8297        TCGA-BR-8360        TCGA-BR-8361        TCGA-BR-8363 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8364        TCGA-BR-8365        TCGA-BR-8368        TCGA-BR-8369 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8370        TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8373 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8380        TCGA-BR-8381        TCGA-BR-8382        TCGA-BR-8384 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8483        TCGA-BR-8485        TCGA-BR-8486        TCGA-BR-8487 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8588        TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8676        TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8680        TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8687 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8690        TCGA-BR-A44T        TCGA-BR-A452        TCGA-BR-A453 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-A4J6        TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-A4QI        TCGA-BR-A4QL        TCGA-BR-A4QM        TCGA-CD-5798 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CD-5799        TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CD-5803        TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CD-8525        TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8529 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CD-8530        TCGA-CD-8531        TCGA-CD-8532        TCGA-CD-8534 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CD-8535        TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CD-A489        TCGA-CD-A48C        TCGA-CD-A4MG        TCGA-CD-A4MH 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CD-A4MI        TCGA-CG-4437        TCGA-CG-4441        TCGA-CG-4449 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5727 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CG-5728        TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CG-5734        TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822        TCGA-D7-8570 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-D7-8572        TCGA-D7-8574        TCGA-D7-8575        TCGA-D7-8576 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-D7-8578        TCGA-D7-8579        TCGA-D7-A4YT        TCGA-D7-A4YU 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-D7-A4YV        TCGA-D7-A4YY        TCGA-D7-A4Z0        TCGA-EQ-5647 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-EQ-8122        TCGA-F1-6177        TCGA-F1-6874        TCGA-F1-6875 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-F1-A448        TCGA-FP-7735        TCGA-FP-7829        TCGA-FP-7998 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-FP-8099        TCGA-FP-8209        TCGA-FP-8210        TCGA-FP-8211 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-FP-8631        TCGA-FP-A4BE        TCGA-HF-7132        TCGA-HF-7136 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-HU-8243        TCGA-HU-8602        TCGA-HU-8604        TCGA-HU-8608 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-HU-A4G3        TCGA-HU-A4G8        TCGA-HU-A4GC        TCGA-HU-A4GD 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GN        TCGA-HU-A4GQ 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-HU-A4GT        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H2 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4H6        TCGA-HU-A4H8 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-IP-7968 
"FAM82A1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM82A1 MUTATED        0      0      2      0      0      0
  FAM82A1 WILD-TYPE     47     39     33     32     23     35
D516V10, multiclass
[1] "Remove cluster labels:" "FAM82A1 MUTATED"       
clus
  FAM82A1 MUTATED FAM82A1 WILD-TYPE 
                2               209 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6453 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-7707        TCGA-BR-7715        TCGA-BR-7717        TCGA-BR-7723 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7958 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8077 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8078        TCGA-BR-8080        TCGA-BR-8284        TCGA-BR-8286 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8289        TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8296 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8297        TCGA-BR-8360        TCGA-BR-8361        TCGA-BR-8363 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8364        TCGA-BR-8365        TCGA-BR-8368        TCGA-BR-8369 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8370        TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8373 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8380        TCGA-BR-8381        TCGA-BR-8382        TCGA-BR-8384 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8483        TCGA-BR-8485        TCGA-BR-8486        TCGA-BR-8487 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8588        TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8676        TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8680        TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8687 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-8690        TCGA-BR-A44T        TCGA-BR-A452        TCGA-BR-A453 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-A4J6        TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-BR-A4QI        TCGA-BR-A4QL        TCGA-BR-A4QM        TCGA-CD-5798 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CD-5799        TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CD-5803        TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CD-8525        TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8529 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CD-8530        TCGA-CD-8531        TCGA-CD-8532        TCGA-CD-8534 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CD-8535        TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CD-A489        TCGA-CD-A48C        TCGA-CD-A4MG        TCGA-CD-A4MH 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CD-A4MI        TCGA-CG-4437        TCGA-CG-4441        TCGA-CG-4449 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5727 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CG-5728        TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-CG-5734        TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822        TCGA-D7-8570 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-D7-8572        TCGA-D7-8574        TCGA-D7-8575        TCGA-D7-8576 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-D7-8578        TCGA-D7-8579        TCGA-D7-A4YT        TCGA-D7-A4YU 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-D7-A4YV        TCGA-D7-A4YY        TCGA-D7-A4Z0        TCGA-EQ-5647 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-EQ-8122        TCGA-F1-6177        TCGA-F1-6874        TCGA-F1-6875 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-F1-A448        TCGA-FP-7735        TCGA-FP-7829        TCGA-FP-7998 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-FP-8099        TCGA-FP-8209        TCGA-FP-8210        TCGA-FP-8211 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-FP-8631        TCGA-FP-A4BE        TCGA-HF-7132        TCGA-HF-7136 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-HU-8243        TCGA-HU-8602        TCGA-HU-8604        TCGA-HU-8608 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-HU-A4G3        TCGA-HU-A4G8        TCGA-HU-A4GC        TCGA-HU-A4GD 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GN        TCGA-HU-A4GQ 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-HU-A4GT        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H2 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4H6        TCGA-HU-A4H8 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" "FAM82A1 WILD-TYPE" 
       TCGA-IP-7968 
"FAM82A1 WILD-TYPE" 

Clustering(517) Variable = PIWIL2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIWIL2 MUTATED        0      6      0      0      0
  PIWIL2 WILD-TYPE     79    120     27     43     12
D517V1, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              6              120
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIWIL2 MUTATED        0      4      0      1
  PIWIL2 WILD-TYPE     71     72     34     62
D517V2, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              4               72
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIWIL2 MUTATED        1      2      2      0      1
  PIWIL2 WILD-TYPE     15     60     49     65     54
D517V3, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              2               60
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIWIL2 MUTATED        2      3      1      0
  PIWIL2 WILD-TYPE     96     41     49     57
D517V4, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              3               41
  CLUS_3              1               49
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIWIL2 MUTATED        4      0      0      1      0
  PIWIL2 WILD-TYPE     58     59     40     36     59
D517V5, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIWIL2 MUTATED        2      0      3
  PIWIL2 WILD-TYPE    104     54     94
D517V6, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              0               54
  CLUS_3              3               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIWIL2 MUTATED        6      0      0
  PIWIL2 WILD-TYPE    117     95     71
D517V7, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              6              117
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIWIL2 MUTATED        6      0      0
  PIWIL2 WILD-TYPE    151     63     69
D517V8, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              6              151
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIWIL2 MUTATED        3      0      2      0      0      0
  PIWIL2 WILD-TYPE     30     19     57     39     16     45
D517V9, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              0               19
  CLUS_3              2               57
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIWIL2 MUTATED        3      0      2      0      0      0
  PIWIL2 WILD-TYPE     44     39     33     32     23     35
D517V10, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(518) Variable = KCTD21 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCTD21 MUTATED        0      5      1      1      0
  KCTD21 WILD-TYPE     79    121     26     42     12
D518V1, multiclass
        clus
vv       KCTD21 MUTATED KCTD21 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              5              121
  CLUS_3              1               26
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD21 MUTATED        1      2      1      1
  KCTD21 WILD-TYPE     70     74     33     62
D518V2, multiclass
        clus
vv       KCTD21 MUTATED KCTD21 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              2               74
  CLUS_3              1               33
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCTD21 MUTATED        1      1      2      1      2
  KCTD21 WILD-TYPE     15     61     49     64     53
D518V3, multiclass
        clus
vv       KCTD21 MUTATED KCTD21 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              1               61
  CLUS_3              2               49
  CLUS_4              1               64
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD21 MUTATED        2      3      1      1
  KCTD21 WILD-TYPE     96     41     49     56
D518V4, multiclass
        clus
vv       KCTD21 MUTATED KCTD21 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              3               41
  CLUS_3              1               49
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCTD21 MUTATED        4      1      1      1      0
  KCTD21 WILD-TYPE     58     58     39     36     59
D518V5, multiclass
        clus
vv       KCTD21 MUTATED KCTD21 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KCTD21 MUTATED        4      0      3
  KCTD21 WILD-TYPE    102     54     94
D518V6, multiclass
        clus
vv       KCTD21 MUTATED KCTD21 WILD-TYPE
  CLUS_1              4              102
  CLUS_2              0               54
  CLUS_3              3               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KCTD21 MUTATED        7      0      0
  KCTD21 WILD-TYPE    116     95     71
D518V7, multiclass
        clus
vv       KCTD21 MUTATED KCTD21 WILD-TYPE
  CLUS_1              7              116
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KCTD21 MUTATED        7      0      0
  KCTD21 WILD-TYPE    150     63     69
D518V8, multiclass
        clus
vv       KCTD21 MUTATED KCTD21 WILD-TYPE
  CLUS_1              7              150
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCTD21 MUTATED        0      2      3      0      0      0
  KCTD21 WILD-TYPE     33     17     56     39     16     45
D518V9, multiclass
        clus
vv       KCTD21 MUTATED KCTD21 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              2               17
  CLUS_3              3               56
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCTD21 MUTATED        2      0      2      0      1      0
  KCTD21 WILD-TYPE     45     39     33     32     22     35
D518V10, multiclass
        clus
vv       KCTD21 MUTATED KCTD21 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              0               32
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(519) Variable = ITSN2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITSN2 MUTATED        2     11      1      1      1
  ITSN2 WILD-TYPE     77    115     26     42     11
D519V1, multiclass
        clus
vv       ITSN2 MUTATED ITSN2 WILD-TYPE
  CLUS_1             2              77
  CLUS_2            11             115
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITSN2 MUTATED        0      8      2      1
  ITSN2 WILD-TYPE     71     68     32     62
D519V2, multiclass
        clus
vv       ITSN2 MUTATED ITSN2 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             8              68
  CLUS_3             2              32
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITSN2 MUTATED        1      6      4      3      1
  ITSN2 WILD-TYPE     15     56     47     62     54
D519V3, multiclass
        clus
vv       ITSN2 MUTATED ITSN2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             6              56
  CLUS_3             4              47
  CLUS_4             3              62
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITSN2 MUTATED        5      5      3      2
  ITSN2 WILD-TYPE     93     39     47     55
D519V4, multiclass
        clus
vv       ITSN2 MUTATED ITSN2 WILD-TYPE
  CLUS_1             5              93
  CLUS_2             5              39
  CLUS_3             3              47
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITSN2 MUTATED        8      2      1      3      1
  ITSN2 WILD-TYPE     54     57     39     34     58
D519V5, multiclass
        clus
vv       ITSN2 MUTATED ITSN2 WILD-TYPE
  CLUS_1             8              54
  CLUS_2             2              57
  CLUS_3             1              39
  CLUS_4             3              34
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITSN2 MUTATED        5      1      9
  ITSN2 WILD-TYPE    101     53     88
D519V6, multiclass
        clus
vv       ITSN2 MUTATED ITSN2 WILD-TYPE
  CLUS_1             5             101
  CLUS_2             1              53
  CLUS_3             9              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITSN2 MUTATED       14      2      0
  ITSN2 WILD-TYPE    109     93     71
D519V7, multiclass
        clus
vv       ITSN2 MUTATED ITSN2 WILD-TYPE
  CLUS_1            14             109
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITSN2 MUTATED       15      1      0
  ITSN2 WILD-TYPE    142     62     69
D519V8, multiclass
        clus
vv       ITSN2 MUTATED ITSN2 WILD-TYPE
  CLUS_1            15             142
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ITSN2 MUTATED        0      1      6      3      0      0
  ITSN2 WILD-TYPE     33     18     53     36     16     45
D519V9, multiclass
        clus
vv       ITSN2 MUTATED ITSN2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              18
  CLUS_3             6              53
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ITSN2 MUTATED        2      0      4      2      2      0
  ITSN2 WILD-TYPE     45     39     31     30     21     35
D519V10, multiclass
        clus
vv       ITSN2 MUTATED ITSN2 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             4              31
  CLUS_4             2              30
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(520) Variable = GLYR1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLYR1 MUTATED        1     11      0      1      0
  GLYR1 WILD-TYPE     78    115     27     42     12
D520V1, multiclass
        clus
vv       GLYR1 MUTATED GLYR1 WILD-TYPE
  CLUS_1             1              78
  CLUS_2            11             115
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLYR1 MUTATED        2      7      0      0
  GLYR1 WILD-TYPE     69     69     34     63
D520V2, multiclass
        clus
vv       GLYR1 MUTATED GLYR1 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             7              69
  CLUS_3             0              34
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLYR1 MUTATED        0      7      1      0      3
  GLYR1 WILD-TYPE     16     55     50     65     52
D520V3, multiclass
        clus
vv       GLYR1 MUTATED GLYR1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             7              55
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLYR1 MUTATED        1      6      4      0
  GLYR1 WILD-TYPE     97     38     46     57
D520V4, multiclass
        clus
vv       GLYR1 MUTATED GLYR1 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             6              38
  CLUS_3             4              46
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLYR1 MUTATED        3      1      2      3      1
  GLYR1 WILD-TYPE     59     58     38     34     58
D520V5, multiclass
        clus
vv       GLYR1 MUTATED GLYR1 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              58
  CLUS_3             2              38
  CLUS_4             3              34
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GLYR1 MUTATED        2      0      8
  GLYR1 WILD-TYPE    104     54     89
D520V6, multiclass
        clus
vv       GLYR1 MUTATED GLYR1 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GLYR1 MUTATED       10      1      2
  GLYR1 WILD-TYPE    113     94     69
D520V7, multiclass
        clus
vv       GLYR1 MUTATED GLYR1 WILD-TYPE
  CLUS_1            10             113
  CLUS_2             1              94
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GLYR1 MUTATED       12      0      1
  GLYR1 WILD-TYPE    145     63     68
D520V8, multiclass
        clus
vv       GLYR1 MUTATED GLYR1 WILD-TYPE
  CLUS_1            12             145
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GLYR1 MUTATED        2      3      1      2      0      0
  GLYR1 WILD-TYPE     31     16     58     37     16     45
D520V9, multiclass
        clus
vv       GLYR1 MUTATED GLYR1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             3              16
  CLUS_3             1              58
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GLYR1 MUTATED        2      0      1      3      1      1
  GLYR1 WILD-TYPE     45     39     34     29     22     34
D520V10, multiclass
        clus
vv       GLYR1 MUTATED GLYR1 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             3              29
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(521) Variable = PHACTR1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR1 MUTATED        0      7      1      0      1
  PHACTR1 WILD-TYPE     79    119     26     43     11
D521V1, multiclass
        clus
vv       PHACTR1 MUTATED PHACTR1 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               7               119
  CLUS_3               1                26
  CLUS_4               0                43
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHACTR1 MUTATED        0      3      1      1
  PHACTR1 WILD-TYPE     71     73     33     62
D521V2, multiclass
        clus
vv       PHACTR1 MUTATED PHACTR1 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               3                73
  CLUS_3               1                33
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR1 MUTATED        0      3      2      1      3
  PHACTR1 WILD-TYPE     16     59     49     64     52
D521V3, multiclass
        clus
vv       PHACTR1 MUTATED PHACTR1 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               3                59
  CLUS_3               2                49
  CLUS_4               1                64
  CLUS_5               3                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHACTR1 MUTATED        1      5      2      1
  PHACTR1 WILD-TYPE     97     39     48     56
D521V4, multiclass
        clus
vv       PHACTR1 MUTATED PHACTR1 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               5                39
  CLUS_3               2                48
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR1 MUTATED        2      2      0      3      0
  PHACTR1 WILD-TYPE     60     57     40     34     59
D521V5, multiclass
        clus
vv       PHACTR1 MUTATED PHACTR1 WILD-TYPE
  CLUS_1               2                60
  CLUS_2               2                57
  CLUS_3               0                40
  CLUS_4               3                34
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PHACTR1 MUTATED        2      0      5
  PHACTR1 WILD-TYPE    104     54     92
D521V6, multiclass
        clus
vv       PHACTR1 MUTATED PHACTR1 WILD-TYPE
  CLUS_1               2               104
  CLUS_2               0                54
  CLUS_3               5                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PHACTR1 MUTATED        6      3      0
  PHACTR1 WILD-TYPE    117     92     71
D521V7, multiclass
        clus
vv       PHACTR1 MUTATED PHACTR1 WILD-TYPE
  CLUS_1               6               117
  CLUS_2               3                92
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PHACTR1 MUTATED        7      1      1
  PHACTR1 WILD-TYPE    150     62     68
D521V8, multiclass
        clus
vv       PHACTR1 MUTATED PHACTR1 WILD-TYPE
  CLUS_1               7               150
  CLUS_2               1                62
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHACTR1 MUTATED        1      0      1      1      1      1
  PHACTR1 WILD-TYPE     32     19     58     38     15     44
D521V9, multiclass
        clus
vv       PHACTR1 MUTATED PHACTR1 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                19
  CLUS_3               1                58
  CLUS_4               1                38
  CLUS_5               1                15
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHACTR1 MUTATED        2      1      0      0      1      1
  PHACTR1 WILD-TYPE     45     38     35     32     22     34
D521V10, multiclass
        clus
vv       PHACTR1 MUTATED PHACTR1 WILD-TYPE
  CLUS_1               2                45
  CLUS_2               1                38
  CLUS_3               0                35
  CLUS_4               0                32
  CLUS_5               1                22
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(522) Variable = NRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRAS MUTATED        1      2      0      0      0
  NRAS WILD-TYPE     78    124     27     43     12
D522V1, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            1             78
  CLUS_2            2            124
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        0      0      1      2
  NRAS WILD-TYPE     71     76     33     61
D522V2, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0             71
  CLUS_2            0             76
  CLUS_3            1             33
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRAS MUTATED        0      0      0      1      2
  NRAS WILD-TYPE     16     62     51     64     53
D522V3, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0             16
  CLUS_2            0             62
  CLUS_3            0             51
  CLUS_4            1             64
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        2      0      0      1
  NRAS WILD-TYPE     96     44     50     56
D522V4, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            2             96
  CLUS_2            0             44
  CLUS_3            0             50
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRAS MUTATED        0      2      0      0      0
  NRAS WILD-TYPE     62     57     40     37     59
D522V5, multiclass
[1] "Remove cluster labels:" "NRAS MUTATED"          
clus
  NRAS MUTATED NRAS WILD-TYPE 
             2            255 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4187     TCGA-BR-4191 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-4201     TCGA-BR-4253     TCGA-BR-4255     TCGA-BR-4256 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-4257     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-4292     TCGA-BR-4294     TCGA-BR-4357     TCGA-BR-4361 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-4362     TCGA-BR-4363     TCGA-BR-4366     TCGA-BR-4368 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-4369     TCGA-BR-4370     TCGA-BR-4371     TCGA-BR-6452 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-6453     TCGA-BR-6454     TCGA-BR-6456     TCGA-BR-6457 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-7707     TCGA-BR-7715     TCGA-BR-7716     TCGA-BR-7717 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-7722     TCGA-BR-7723     TCGA-BR-7851     TCGA-BR-7901 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959     TCGA-BR-8058 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8059     TCGA-BR-8077     TCGA-BR-8078     TCGA-BR-8080 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8081     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8297     TCGA-BR-8361     TCGA-BR-8363 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8364     TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8371     TCGA-BR-8372 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381     TCGA-BR-8382 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8484     TCGA-BR-8485 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8589 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8677 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8686     TCGA-BR-8687     TCGA-BR-A44T 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CR     TCGA-BR-A4CS 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY     TCGA-BR-A4IZ 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-A4J1     TCGA-BR-A4J2     TCGA-BR-A4J4     TCGA-BR-A4J6 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4PE 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-A4PF     TCGA-BR-A4QI     TCGA-CD-5798     TCGA-CD-5799 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5803     TCGA-CD-5804 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8526     TCGA-CD-8528 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-8534     TCGA-CD-8535     TCGA-CD-8536     TCGA-CD-A486 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-A487     TCGA-CD-A48C     TCGA-CD-A4MG     TCGA-CD-A4MH 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4301     TCGA-CG-4304 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4442 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4462 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469     TCGA-CG-4474 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-4475     TCGA-CG-4476     TCGA-CG-4477     TCGA-CG-5717 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5726 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-8572     TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8575 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-8576     TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4YX     TCGA-D7-A4YY 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-A4Z0     TCGA-EQ-8122     TCGA-EQ-A4SO     TCGA-F1-6177 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-F1-6874     TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7735 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211     TCGA-FP-8631 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FP-A4BE     TCGA-HF-7132     TCGA-HF-7133     TCGA-HF-7136 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-8602     TCGA-HU-8604     TCGA-HU-8608     TCGA-HU-8610 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-A4G2     TCGA-HU-A4G3     TCGA-HU-A4G6     TCGA-HU-A4G8 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-A4G9     TCGA-HU-A4GC     TCGA-HU-A4GF     TCGA-HU-A4GH 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GT     TCGA-HU-A4GU 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H0     TCGA-HU-A4H2 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-A4H8     TCGA-HU-A4HD     TCGA-IN-7806     TCGA-IN-7808 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-IN-8462     TCGA-IN-8663     TCGA-IP-7968 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        1      1      0
  NRAS WILD-TYPE    105     53     97
D522V6, multiclass
[1] "Remove cluster labels:" "NRAS MUTATED"          
clus
  NRAS MUTATED NRAS WILD-TYPE 
             2            255 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4187     TCGA-BR-4191 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-4201     TCGA-BR-4253     TCGA-BR-4255     TCGA-BR-4256 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-4257     TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-4292     TCGA-BR-4294     TCGA-BR-4357     TCGA-BR-4361 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-4362     TCGA-BR-4363     TCGA-BR-4366     TCGA-BR-4368 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-4369     TCGA-BR-4370     TCGA-BR-4371     TCGA-BR-6452 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-6453     TCGA-BR-6454     TCGA-BR-6456     TCGA-BR-6457 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-7707     TCGA-BR-7715     TCGA-BR-7716     TCGA-BR-7717 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-7722     TCGA-BR-7723     TCGA-BR-7851     TCGA-BR-7901 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959     TCGA-BR-8058 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8059     TCGA-BR-8077     TCGA-BR-8078     TCGA-BR-8080 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8081     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8297     TCGA-BR-8361     TCGA-BR-8363 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8364     TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8371     TCGA-BR-8372 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381     TCGA-BR-8382 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8484     TCGA-BR-8485 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8589 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8677 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8686     TCGA-BR-8687     TCGA-BR-A44T 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CR     TCGA-BR-A4CS 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY     TCGA-BR-A4IZ 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-A4J1     TCGA-BR-A4J2     TCGA-BR-A4J4     TCGA-BR-A4J6 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4PE 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-A4PF     TCGA-BR-A4QI     TCGA-CD-5798     TCGA-CD-5799 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5803     TCGA-CD-5804 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8526     TCGA-CD-8528 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-8534     TCGA-CD-8535     TCGA-CD-8536     TCGA-CD-A486 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-A487     TCGA-CD-A48C     TCGA-CD-A4MG     TCGA-CD-A4MH 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4301     TCGA-CG-4304 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-4438     TCGA-CG-4440     TCGA-CG-4441     TCGA-CG-4442 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4462 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469     TCGA-CG-4474 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-4475     TCGA-CG-4476     TCGA-CG-4477     TCGA-CG-5717 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5726 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-8572     TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8575 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-8576     TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4YX     TCGA-D7-A4YY 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-A4Z0     TCGA-EQ-8122     TCGA-EQ-A4SO     TCGA-F1-6177 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-F1-6874     TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7735 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211     TCGA-FP-8631 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FP-A4BE     TCGA-HF-7132     TCGA-HF-7133     TCGA-HF-7136 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-8602     TCGA-HU-8604     TCGA-HU-8608     TCGA-HU-8610 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-A4G2     TCGA-HU-A4G3     TCGA-HU-A4G6     TCGA-HU-A4G8 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-A4G9     TCGA-HU-A4GC     TCGA-HU-A4GF     TCGA-HU-A4GH 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GT     TCGA-HU-A4GU 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H0     TCGA-HU-A4H2 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-A4H8     TCGA-HU-A4HD     TCGA-IN-7806     TCGA-IN-7808 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-IN-8462     TCGA-IN-8663     TCGA-IP-7968 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        2      1      0
  NRAS WILD-TYPE    121     94     71
D522V7, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            2            121
  CLUS_2            1             94
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        2      1      0
  NRAS WILD-TYPE    155     62     69
D522V8, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            2            155
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NRAS MUTATED        0      0      1      0      0      1
  NRAS WILD-TYPE     33     19     58     39     16     44
D522V9, multiclass
[1] "Remove cluster labels:" "NRAS MUTATED"          
clus
  NRAS MUTATED NRAS WILD-TYPE 
             2            209 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6453 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6456     TCGA-BR-6457     TCGA-BR-6458 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6710 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-7715     TCGA-BR-7717     TCGA-BR-7723     TCGA-BR-7851 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8077     TCGA-BR-8078 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8297 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8360     TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373     TCGA-BR-8380 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8677     TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8682     TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-A44T     TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-A4CR     TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J6 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-5804     TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-8526     TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8534     TCGA-CD-8535 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A48C 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CG-4437 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5717     TCGA-CG-5718 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-8572     TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YY     TCGA-D7-A4Z0     TCGA-EQ-5647 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829     TCGA-FP-7998 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FP-8631     TCGA-FP-A4BE     TCGA-HF-7132     TCGA-HF-7136 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604     TCGA-HU-8608 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC     TCGA-HU-A4GD 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GN     TCGA-HU-A4GQ 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-A4GT     TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H2 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6     TCGA-HU-A4H8 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-IP-7968 
"NRAS WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NRAS MUTATED        0      1      1      0      0      0
  NRAS WILD-TYPE     47     38     34     32     23     35
D522V10, multiclass
[1] "Remove cluster labels:" "NRAS MUTATED"          
clus
  NRAS MUTATED NRAS WILD-TYPE 
             2            209 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6453 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6456     TCGA-BR-6457     TCGA-BR-6458 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6710 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-7715     TCGA-BR-7717     TCGA-BR-7723     TCGA-BR-7851 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8077     TCGA-BR-8078 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8297 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8360     TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373     TCGA-BR-8380 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8677     TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-8682     TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-A44T     TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-A4CR     TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J6 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-5804     TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-8526     TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8534     TCGA-CD-8535 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A48C 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CG-4437 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5717     TCGA-CG-5718 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-8572     TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YY     TCGA-D7-A4Z0     TCGA-EQ-5647 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829     TCGA-FP-7998 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-FP-8631     TCGA-FP-A4BE     TCGA-HF-7132     TCGA-HF-7136 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604     TCGA-HU-8608 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC     TCGA-HU-A4GD 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GN     TCGA-HU-A4GQ 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-A4GT     TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H2 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6     TCGA-HU-A4H8 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-IP-7968 
"NRAS WILD-TYPE" 

Clustering(523) Variable = STAU2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAU2 MUTATED        1      6      1      0      0
  STAU2 WILD-TYPE     78    120     26     43     12
D523V1, multiclass
        clus
vv       STAU2 MUTATED STAU2 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             6             120
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAU2 MUTATED        1      1      1      0
  STAU2 WILD-TYPE     70     75     33     63
D523V2, multiclass
        clus
vv       STAU2 MUTATED STAU2 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             1              75
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAU2 MUTATED        0      1      4      0      3
  STAU2 WILD-TYPE     16     61     47     65     52
D523V3, multiclass
        clus
vv       STAU2 MUTATED STAU2 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              61
  CLUS_3             4              47
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAU2 MUTATED        1      6      0      1
  STAU2 WILD-TYPE     97     38     50     56
D523V4, multiclass
        clus
vv       STAU2 MUTATED STAU2 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             6              38
  CLUS_3             0              50
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAU2 MUTATED        1      0      2      1      2
  STAU2 WILD-TYPE     61     59     38     36     57
D523V5, multiclass
        clus
vv       STAU2 MUTATED STAU2 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             0              59
  CLUS_3             2              38
  CLUS_4             1              36
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAU2 MUTATED        3      0      3
  STAU2 WILD-TYPE    103     54     94
D523V6, multiclass
        clus
vv       STAU2 MUTATED STAU2 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAU2 MUTATED        5      1      2
  STAU2 WILD-TYPE    118     94     69
D523V7, multiclass
        clus
vv       STAU2 MUTATED STAU2 WILD-TYPE
  CLUS_1             5             118
  CLUS_2             1              94
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAU2 MUTATED        5      1      2
  STAU2 WILD-TYPE    152     62     67
D523V8, multiclass
        clus
vv       STAU2 MUTATED STAU2 WILD-TYPE
  CLUS_1             5             152
  CLUS_2             1              62
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STAU2 MUTATED        0      1      0      0      1      1
  STAU2 WILD-TYPE     33     18     59     39     15     44
D523V9, multiclass
        clus
vv       STAU2 MUTATED STAU2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              18
  CLUS_3             0              59
  CLUS_4             0              39
  CLUS_5             1              15
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STAU2 MUTATED        0      1      0      1      0      1
  STAU2 WILD-TYPE     47     38     35     31     23     34
D523V10, multiclass
        clus
vv       STAU2 MUTATED STAU2 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             1              38
  CLUS_3             0              35
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(524) Variable = SLC4A3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC4A3 MUTATED        1     10      0      2      2
  SLC4A3 WILD-TYPE     78    116     27     41     10
D524V1, multiclass
        clus
vv       SLC4A3 MUTATED SLC4A3 WILD-TYPE
  CLUS_1              1               78
  CLUS_2             10              116
  CLUS_3              0               27
  CLUS_4              2               41
  CLUS_5              2               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC4A3 MUTATED        1      7      3      1
  SLC4A3 WILD-TYPE     70     69     31     62
D524V2, multiclass
        clus
vv       SLC4A3 MUTATED SLC4A3 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              7               69
  CLUS_3              3               31
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC4A3 MUTATED        1      7      2      1      1
  SLC4A3 WILD-TYPE     15     55     49     64     54
D524V3, multiclass
        clus
vv       SLC4A3 MUTATED SLC4A3 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              7               55
  CLUS_3              2               49
  CLUS_4              1               64
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC4A3 MUTATED        3      2      5      2
  SLC4A3 WILD-TYPE     95     42     45     55
D524V4, multiclass
        clus
vv       SLC4A3 MUTATED SLC4A3 WILD-TYPE
  CLUS_1              3               95
  CLUS_2              2               42
  CLUS_3              5               45
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC4A3 MUTATED        8      2      1      2      1
  SLC4A3 WILD-TYPE     54     57     39     35     58
D524V5, multiclass
        clus
vv       SLC4A3 MUTATED SLC4A3 WILD-TYPE
  CLUS_1              8               54
  CLUS_2              2               57
  CLUS_3              1               39
  CLUS_4              2               35
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC4A3 MUTATED        2      2     10
  SLC4A3 WILD-TYPE    104     52     87
D524V6, multiclass
        clus
vv       SLC4A3 MUTATED SLC4A3 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              2               52
  CLUS_3             10               87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC4A3 MUTATED       11      1      3
  SLC4A3 WILD-TYPE    112     94     68
D524V7, multiclass
        clus
vv       SLC4A3 MUTATED SLC4A3 WILD-TYPE
  CLUS_1             11              112
  CLUS_2              1               94
  CLUS_3              3               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC4A3 MUTATED       12      0      3
  SLC4A3 WILD-TYPE    145     63     66
D524V8, multiclass
        clus
vv       SLC4A3 MUTATED SLC4A3 WILD-TYPE
  CLUS_1             12              145
  CLUS_2              0               63
  CLUS_3              3               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC4A3 MUTATED        1      1      4      5      0      0
  SLC4A3 WILD-TYPE     32     18     55     34     16     45
D524V9, multiclass
        clus
vv       SLC4A3 MUTATED SLC4A3 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              4               55
  CLUS_4              5               34
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC4A3 MUTATED        3      0      3      2      3      0
  SLC4A3 WILD-TYPE     44     39     32     30     20     35
D524V10, multiclass
        clus
vv       SLC4A3 MUTATED SLC4A3 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              2               30
  CLUS_5              3               20
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(525) Variable = RAI1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAI1 MUTATED        2     16      2      2      1
  RAI1 WILD-TYPE     77    110     25     41     11
D525V1, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            2             77
  CLUS_2           16            110
  CLUS_3            2             25
  CLUS_4            2             41
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAI1 MUTATED        3     12      1      3
  RAI1 WILD-TYPE     68     64     33     60
D525V2, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            3             68
  CLUS_2           12             64
  CLUS_3            1             33
  CLUS_4            3             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAI1 MUTATED        2      3      5      2      7
  RAI1 WILD-TYPE     14     59     46     63     48
D525V3, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            3             59
  CLUS_3            5             46
  CLUS_4            2             63
  CLUS_5            7             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAI1 MUTATED        6      8      4      1
  RAI1 WILD-TYPE     92     36     46     56
D525V4, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            6             92
  CLUS_2            8             36
  CLUS_3            4             46
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAI1 MUTATED        8      2      3      5      3
  RAI1 WILD-TYPE     54     57     37     32     56
D525V5, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            8             54
  CLUS_2            2             57
  CLUS_3            3             37
  CLUS_4            5             32
  CLUS_5            3             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAI1 MUTATED        6      1     14
  RAI1 WILD-TYPE    100     53     83
D525V6, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            6            100
  CLUS_2            1             53
  CLUS_3           14             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAI1 MUTATED       17      3      3
  RAI1 WILD-TYPE    106     92     68
D525V7, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1           17            106
  CLUS_2            3             92
  CLUS_3            3             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAI1 MUTATED       19      3      1
  RAI1 WILD-TYPE    138     60     68
D525V8, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1           19            138
  CLUS_2            3             60
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RAI1 MUTATED        2      4      3      4      0      2
  RAI1 WILD-TYPE     31     15     56     35     16     43
D525V9, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            4             15
  CLUS_3            3             56
  CLUS_4            4             35
  CLUS_5            0             16
  CLUS_6            2             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RAI1 MUTATED        6      1      3      3      2      0
  RAI1 WILD-TYPE     41     38     32     29     21     35
D525V10, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            6             41
  CLUS_2            1             38
  CLUS_3            3             32
  CLUS_4            3             29
  CLUS_5            2             21
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(526) Variable = PPP2R3B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP2R3B MUTATED        1     13      0      0      1
  PPP2R3B WILD-TYPE     78    113     27     43     11
D526V1, multiclass
        clus
vv       PPP2R3B MUTATED PPP2R3B WILD-TYPE
  CLUS_1               1                78
  CLUS_2              13               113
  CLUS_3               0                27
  CLUS_4               0                43
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP2R3B MUTATED        1      5      3      1
  PPP2R3B WILD-TYPE     70     71     31     62
D526V2, multiclass
        clus
vv       PPP2R3B MUTATED PPP2R3B WILD-TYPE
  CLUS_1               1                70
  CLUS_2               5                71
  CLUS_3               3                31
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP2R3B MUTATED        1      4      3      1      3
  PPP2R3B WILD-TYPE     15     58     48     64     52
D526V3, multiclass
        clus
vv       PPP2R3B MUTATED PPP2R3B WILD-TYPE
  CLUS_1               1                15
  CLUS_2               4                58
  CLUS_3               3                48
  CLUS_4               1                64
  CLUS_5               3                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP2R3B MUTATED        2      7      2      1
  PPP2R3B WILD-TYPE     96     37     48     56
D526V4, multiclass
        clus
vv       PPP2R3B MUTATED PPP2R3B WILD-TYPE
  CLUS_1               2                96
  CLUS_2               7                37
  CLUS_3               2                48
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP2R3B MUTATED       10      0      2      1      1
  PPP2R3B WILD-TYPE     52     59     38     36     58
D526V5, multiclass
        clus
vv       PPP2R3B MUTATED PPP2R3B WILD-TYPE
  CLUS_1              10                52
  CLUS_2               0                59
  CLUS_3               2                38
  CLUS_4               1                36
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP2R3B MUTATED        5      0      9
  PPP2R3B WILD-TYPE    101     54     88
D526V6, multiclass
        clus
vv       PPP2R3B MUTATED PPP2R3B WILD-TYPE
  CLUS_1               5               101
  CLUS_2               0                54
  CLUS_3               9                88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP2R3B MUTATED       14      0      1
  PPP2R3B WILD-TYPE    109     95     70
D526V7, multiclass
        clus
vv       PPP2R3B MUTATED PPP2R3B WILD-TYPE
  CLUS_1              14               109
  CLUS_2               0                95
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPP2R3B MUTATED       14      0      1
  PPP2R3B WILD-TYPE    143     63     68
D526V8, multiclass
        clus
vv       PPP2R3B MUTATED PPP2R3B WILD-TYPE
  CLUS_1              14               143
  CLUS_2               0                63
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPP2R3B MUTATED        1      1      4      3      1      0
  PPP2R3B WILD-TYPE     32     18     55     36     15     45
D526V9, multiclass
        clus
vv       PPP2R3B MUTATED PPP2R3B WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                18
  CLUS_3               4                55
  CLUS_4               3                36
  CLUS_5               1                15
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPP2R3B MUTATED        4      0      3      0      2      1
  PPP2R3B WILD-TYPE     43     39     32     32     21     34
D526V10, multiclass
        clus
vv       PPP2R3B MUTATED PPP2R3B WILD-TYPE
  CLUS_1               4                43
  CLUS_2               0                39
  CLUS_3               3                32
  CLUS_4               0                32
  CLUS_5               2                21
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(527) Variable = SLC45A4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC45A4 MUTATED        1     14      0      1      1
  SLC45A4 WILD-TYPE     78    112     27     42     11
D527V1, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               1                78
  CLUS_2              14               112
  CLUS_3               0                27
  CLUS_4               1                42
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC45A4 MUTATED        0     12      1      2
  SLC45A4 WILD-TYPE     71     64     33     61
D527V2, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               0                71
  CLUS_2              12                64
  CLUS_3               1                33
  CLUS_4               2                61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC45A4 MUTATED        1      6      7      0      2
  SLC45A4 WILD-TYPE     15     56     44     65     53
D527V3, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               6                56
  CLUS_3               7                44
  CLUS_4               0                65
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC45A4 MUTATED        3      8      5      0
  SLC45A4 WILD-TYPE     95     36     45     57
D527V4, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               3                95
  CLUS_2               8                36
  CLUS_3               5                45
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC45A4 MUTATED        9      2      1      4      1
  SLC45A4 WILD-TYPE     53     57     39     33     58
D527V5, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               9                53
  CLUS_2               2                57
  CLUS_3               1                39
  CLUS_4               4                33
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC45A4 MUTATED        4      1     12
  SLC45A4 WILD-TYPE    102     53     85
D527V6, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               4               102
  CLUS_2               1                53
  CLUS_3              12                85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC45A4 MUTATED       13      2      3
  SLC45A4 WILD-TYPE    110     93     68
D527V7, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1              13               110
  CLUS_2               2                93
  CLUS_3               3                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC45A4 MUTATED       15      2      1
  SLC45A4 WILD-TYPE    142     61     68
D527V8, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1              15               142
  CLUS_2               2                61
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC45A4 MUTATED        1      1      7      4      0      0
  SLC45A4 WILD-TYPE     32     18     52     35     16     45
D527V9, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                18
  CLUS_3               7                52
  CLUS_4               4                35
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC45A4 MUTATED        5      0      4      0      3      1
  SLC45A4 WILD-TYPE     42     39     31     32     20     34
D527V10, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               5                42
  CLUS_2               0                39
  CLUS_3               4                31
  CLUS_4               0                32
  CLUS_5               3                20
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(528) Variable = KIAA1609 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1609 MUTATED        0      4      0      1      2
  KIAA1609 WILD-TYPE     79    122     27     42     10
D528V1, multiclass
        clus
vv       KIAA1609 MUTATED KIAA1609 WILD-TYPE
  CLUS_1                0                 79
  CLUS_2                4                122
  CLUS_3                0                 27
  CLUS_4                1                 42
  CLUS_5                2                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1609 MUTATED        0      3      1      1
  KIAA1609 WILD-TYPE     71     73     33     62
D528V2, multiclass
        clus
vv       KIAA1609 MUTATED KIAA1609 WILD-TYPE
  CLUS_1                0                 71
  CLUS_2                3                 73
  CLUS_3                1                 33
  CLUS_4                1                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1609 MUTATED        1      3      0      1      0
  KIAA1609 WILD-TYPE     15     59     51     64     55
D528V3, multiclass
        clus
vv       KIAA1609 MUTATED KIAA1609 WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                3                 59
  CLUS_3                0                 51
  CLUS_4                1                 64
  CLUS_5                0                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1609 MUTATED        2      2      0      1
  KIAA1609 WILD-TYPE     96     42     50     56
D528V4, multiclass
        clus
vv       KIAA1609 MUTATED KIAA1609 WILD-TYPE
  CLUS_1                2                 96
  CLUS_2                2                 42
  CLUS_3                0                 50
  CLUS_4                1                 56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1609 MUTATED        4      1      1      0      0
  KIAA1609 WILD-TYPE     58     58     39     37     59
D528V5, multiclass
        clus
vv       KIAA1609 MUTATED KIAA1609 WILD-TYPE
  CLUS_1                4                 58
  CLUS_2                1                 58
  CLUS_3                1                 39
  CLUS_4                0                 37
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1609 MUTATED        1      1      4
  KIAA1609 WILD-TYPE    105     53     93
D528V6, multiclass
        clus
vv       KIAA1609 MUTATED KIAA1609 WILD-TYPE
  CLUS_1                1                105
  CLUS_2                1                 53
  CLUS_3                4                 93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1609 MUTATED        6      1      0
  KIAA1609 WILD-TYPE    117     94     71
D528V7, multiclass
        clus
vv       KIAA1609 MUTATED KIAA1609 WILD-TYPE
  CLUS_1                6                117
  CLUS_2                1                 94
  CLUS_3                0                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1609 MUTATED        6      1      0
  KIAA1609 WILD-TYPE    151     62     69
D528V8, multiclass
        clus
vv       KIAA1609 MUTATED KIAA1609 WILD-TYPE
  CLUS_1                6                151
  CLUS_2                1                 62
  CLUS_3                0                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1609 MUTATED        0      0      2      2      0      0
  KIAA1609 WILD-TYPE     33     19     57     37     16     45
D528V9, multiclass
        clus
vv       KIAA1609 MUTATED KIAA1609 WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                0                 19
  CLUS_3                2                 57
  CLUS_4                2                 37
  CLUS_5                0                 16
  CLUS_6                0                 45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1609 MUTATED        2      0      1      0      1      0
  KIAA1609 WILD-TYPE     45     39     34     32     22     35
D528V10, multiclass
        clus
vv       KIAA1609 MUTATED KIAA1609 WILD-TYPE
  CLUS_1                2                 45
  CLUS_2                0                 39
  CLUS_3                1                 34
  CLUS_4                0                 32
  CLUS_5                1                 22
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(529) Variable = ZMYM5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM5 MUTATED        0      5      2      1      0
  ZMYM5 WILD-TYPE     79    121     25     42     12
D529V1, multiclass
        clus
vv       ZMYM5 MUTATED ZMYM5 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             5             121
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM5 MUTATED        0      4      1      1
  ZMYM5 WILD-TYPE     71     72     33     62
D529V2, multiclass
        clus
vv       ZMYM5 MUTATED ZMYM5 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             4              72
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM5 MUTATED        2      3      3      0      0
  ZMYM5 WILD-TYPE     14     59     48     65     55
D529V3, multiclass
        clus
vv       ZMYM5 MUTATED ZMYM5 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             3              59
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             0              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM5 MUTATED        2      4      2      0
  ZMYM5 WILD-TYPE     96     40     48     57
D529V4, multiclass
        clus
vv       ZMYM5 MUTATED ZMYM5 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             4              40
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM5 MUTATED        4      0      2      1      0
  ZMYM5 WILD-TYPE     58     59     38     36     59
D529V5, multiclass
        clus
vv       ZMYM5 MUTATED ZMYM5 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             2              38
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM5 MUTATED        2      1      4
  ZMYM5 WILD-TYPE    104     53     93
D529V6, multiclass
        clus
vv       ZMYM5 MUTATED ZMYM5 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              53
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM5 MUTATED        6      2      0
  ZMYM5 WILD-TYPE    117     93     71
D529V7, multiclass
        clus
vv       ZMYM5 MUTATED ZMYM5 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM5 MUTATED        7      1      0
  ZMYM5 WILD-TYPE    150     62     69
D529V8, multiclass
        clus
vv       ZMYM5 MUTATED ZMYM5 WILD-TYPE
  CLUS_1             7             150
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZMYM5 MUTATED        0      0      3      2      0      1
  ZMYM5 WILD-TYPE     33     19     56     37     16     44
D529V9, multiclass
        clus
vv       ZMYM5 MUTATED ZMYM5 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              19
  CLUS_3             3              56
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZMYM5 MUTATED        1      1      3      0      1      0
  ZMYM5 WILD-TYPE     46     38     32     32     22     35
D529V10, multiclass
        clus
vv       ZMYM5 MUTATED ZMYM5 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(530) Variable = MCM4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MCM4 MUTATED        0      9      1      1      1
  MCM4 WILD-TYPE     79    117     26     42     11
D530V1, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            9            117
  CLUS_3            1             26
  CLUS_4            1             42
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCM4 MUTATED        1      4      1      0
  MCM4 WILD-TYPE     70     72     33     63
D530V2, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            4             72
  CLUS_3            1             33
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MCM4 MUTATED        1      3      3      1      3
  MCM4 WILD-TYPE     15     59     48     64     52
D530V3, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            3             59
  CLUS_3            3             48
  CLUS_4            1             64
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCM4 MUTATED        4      6      0      1
  MCM4 WILD-TYPE     94     38     50     56
D530V4, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            4             94
  CLUS_2            6             38
  CLUS_3            0             50
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MCM4 MUTATED        3      2      3      4      0
  MCM4 WILD-TYPE     59     57     37     33     59
D530V5, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            3             59
  CLUS_2            2             57
  CLUS_3            3             37
  CLUS_4            4             33
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MCM4 MUTATED        2      0     10
  MCM4 WILD-TYPE    104     54     87
D530V6, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            0             54
  CLUS_3           10             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MCM4 MUTATED       11      1      0
  MCM4 WILD-TYPE    112     94     71
D530V7, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1           11            112
  CLUS_2            1             94
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MCM4 MUTATED       11      1      0
  MCM4 WILD-TYPE    146     62     69
D530V8, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1           11            146
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MCM4 MUTATED        1      1      3      1      0      0
  MCM4 WILD-TYPE     32     18     56     38     16     45
D530V9, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            3             56
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MCM4 MUTATED        2      0      3      1      0      0
  MCM4 WILD-TYPE     45     39     32     31     23     35
D530V10, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            3             32
  CLUS_4            1             31
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(531) Variable = NBN MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBN MUTATED        1      9      2      1      0
  NBN WILD-TYPE     78    117     25     42     12
D531V1, multiclass
        clus
vv       NBN MUTATED NBN WILD-TYPE
  CLUS_1           1            78
  CLUS_2           9           117
  CLUS_3           2            25
  CLUS_4           1            42
  CLUS_5           0            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBN MUTATED        3      5      1      0
  NBN WILD-TYPE     68     71     33     63
D531V2, multiclass
        clus
vv       NBN MUTATED NBN WILD-TYPE
  CLUS_1           3            68
  CLUS_2           5            71
  CLUS_3           1            33
  CLUS_4           0            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBN MUTATED        0      3      3      2      3
  NBN WILD-TYPE     16     59     48     63     52
D531V3, multiclass
        clus
vv       NBN MUTATED NBN WILD-TYPE
  CLUS_1           0            16
  CLUS_2           3            59
  CLUS_3           3            48
  CLUS_4           2            63
  CLUS_5           3            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBN MUTATED        4      4      1      2
  NBN WILD-TYPE     94     40     49     55
D531V4, multiclass
        clus
vv       NBN MUTATED NBN WILD-TYPE
  CLUS_1           4            94
  CLUS_2           4            40
  CLUS_3           1            49
  CLUS_4           2            55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBN MUTATED        3      3      3      2      1
  NBN WILD-TYPE     59     56     37     35     58
D531V5, multiclass
        clus
vv       NBN MUTATED NBN WILD-TYPE
  CLUS_1           3            59
  CLUS_2           3            56
  CLUS_3           3            37
  CLUS_4           2            35
  CLUS_5           1            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NBN MUTATED        3      2      7
  NBN WILD-TYPE    103     52     90
D531V6, multiclass
        clus
vv       NBN MUTATED NBN WILD-TYPE
  CLUS_1           3           103
  CLUS_2           2            52
  CLUS_3           7            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NBN MUTATED        8      3      2
  NBN WILD-TYPE    115     92     69
D531V7, multiclass
        clus
vv       NBN MUTATED NBN WILD-TYPE
  CLUS_1           8           115
  CLUS_2           3            92
  CLUS_3           2            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NBN MUTATED        8      3      2
  NBN WILD-TYPE    149     60     67
D531V8, multiclass
        clus
vv       NBN MUTATED NBN WILD-TYPE
  CLUS_1           8           149
  CLUS_2           3            60
  CLUS_3           2            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NBN MUTATED        1      3      1      2      1      1
  NBN WILD-TYPE     32     16     58     37     15     44
D531V9, multiclass
        clus
vv       NBN MUTATED NBN WILD-TYPE
  CLUS_1           1            32
  CLUS_2           3            16
  CLUS_3           1            58
  CLUS_4           2            37
  CLUS_5           1            15
  CLUS_6           1            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NBN MUTATED        4      1      1      2      0      1
  NBN WILD-TYPE     43     38     34     30     23     34
D531V10, multiclass
        clus
vv       NBN MUTATED NBN WILD-TYPE
  CLUS_1           4            43
  CLUS_2           1            38
  CLUS_3           1            34
  CLUS_4           2            30
  CLUS_5           0            23
  CLUS_6           1            34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(532) Variable = C19ORF26 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF26 MUTATED        0      6      0      0      1
  C19ORF26 WILD-TYPE     79    120     27     43     11
D532V1, multiclass
        clus
vv       C19ORF26 MUTATED C19ORF26 WILD-TYPE
  CLUS_1                0                 79
  CLUS_2                6                120
  CLUS_3                0                 27
  CLUS_4                0                 43
  CLUS_5                1                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF26 MUTATED        0      3      0      2
  C19ORF26 WILD-TYPE     71     73     34     61
D532V2, multiclass
        clus
vv       C19ORF26 MUTATED C19ORF26 WILD-TYPE
  CLUS_1                0                 71
  CLUS_2                3                 73
  CLUS_3                0                 34
  CLUS_4                2                 61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF26 MUTATED        1      1      2      2      1
  C19ORF26 WILD-TYPE     15     61     49     63     54
D532V3, multiclass
        clus
vv       C19ORF26 MUTATED C19ORF26 WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                1                 61
  CLUS_3                2                 49
  CLUS_4                2                 63
  CLUS_5                1                 54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF26 MUTATED        2      4      0      1
  C19ORF26 WILD-TYPE     96     40     50     56
D532V4, multiclass
        clus
vv       C19ORF26 MUTATED C19ORF26 WILD-TYPE
  CLUS_1                2                 96
  CLUS_2                4                 40
  CLUS_3                0                 50
  CLUS_4                1                 56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF26 MUTATED        4      1      0      2      0
  C19ORF26 WILD-TYPE     58     58     40     35     59
D532V5, multiclass
        clus
vv       C19ORF26 MUTATED C19ORF26 WILD-TYPE
  CLUS_1                4                 58
  CLUS_2                1                 58
  CLUS_3                0                 40
  CLUS_4                2                 35
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF26 MUTATED        2      1      4
  C19ORF26 WILD-TYPE    104     53     93
D532V6, multiclass
        clus
vv       C19ORF26 MUTATED C19ORF26 WILD-TYPE
  CLUS_1                2                104
  CLUS_2                1                 53
  CLUS_3                4                 93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF26 MUTATED        5      1      1
  C19ORF26 WILD-TYPE    118     94     70
D532V7, multiclass
        clus
vv       C19ORF26 MUTATED C19ORF26 WILD-TYPE
  CLUS_1                5                118
  CLUS_2                1                 94
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF26 MUTATED        6      0      1
  C19ORF26 WILD-TYPE    151     63     68
D532V8, multiclass
        clus
vv       C19ORF26 MUTATED C19ORF26 WILD-TYPE
  CLUS_1                6                151
  CLUS_2                0                 63
  CLUS_3                1                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C19ORF26 MUTATED        0      0      3      0      2      0
  C19ORF26 WILD-TYPE     33     19     56     39     14     45
D532V9, multiclass
        clus
vv       C19ORF26 MUTATED C19ORF26 WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                0                 19
  CLUS_3                3                 56
  CLUS_4                0                 39
  CLUS_5                2                 14
  CLUS_6                0                 45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C19ORF26 MUTATED        1      0      2      0      1      1
  C19ORF26 WILD-TYPE     46     39     33     32     22     34
D532V10, multiclass
        clus
vv       C19ORF26 MUTATED C19ORF26 WILD-TYPE
  CLUS_1                1                 46
  CLUS_2                0                 39
  CLUS_3                2                 33
  CLUS_4                0                 32
  CLUS_5                1                 22
  CLUS_6                1                 34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(533) Variable = NARG2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NARG2 MUTATED        0      9      0      2      0
  NARG2 WILD-TYPE     79    117     27     41     12
D533V1, multiclass
        clus
vv       NARG2 MUTATED NARG2 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             9             117
  CLUS_3             0              27
  CLUS_4             2              41
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NARG2 MUTATED        1      7      0      2
  NARG2 WILD-TYPE     70     69     34     61
D533V2, multiclass
        clus
vv       NARG2 MUTATED NARG2 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             7              69
  CLUS_3             0              34
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NARG2 MUTATED        1      5      3      0      2
  NARG2 WILD-TYPE     15     57     48     65     53
D533V3, multiclass
        clus
vv       NARG2 MUTATED NARG2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             5              57
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NARG2 MUTATED        2      6      3      0
  NARG2 WILD-TYPE     96     38     47     57
D533V4, multiclass
        clus
vv       NARG2 MUTATED NARG2 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             6              38
  CLUS_3             3              47
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NARG2 MUTATED        6      1      1      1      0
  NARG2 WILD-TYPE     56     58     39     36     59
D533V5, multiclass
        clus
vv       NARG2 MUTATED NARG2 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NARG2 MUTATED        2      0      7
  NARG2 WILD-TYPE    104     54     90
D533V6, multiclass
        clus
vv       NARG2 MUTATED NARG2 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             7              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NARG2 MUTATED        8      2      1
  NARG2 WILD-TYPE    115     93     70
D533V7, multiclass
        clus
vv       NARG2 MUTATED NARG2 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             2              93
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NARG2 MUTATED       10      1      0
  NARG2 WILD-TYPE    147     62     69
D533V8, multiclass
        clus
vv       NARG2 MUTATED NARG2 WILD-TYPE
  CLUS_1            10             147
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NARG2 MUTATED        1      2      2      2      0      1
  NARG2 WILD-TYPE     32     17     57     37     16     44
D533V9, multiclass
        clus
vv       NARG2 MUTATED NARG2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              17
  CLUS_3             2              57
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NARG2 MUTATED        4      0      2      0      2      0
  NARG2 WILD-TYPE     43     39     33     32     21     35
D533V10, multiclass
        clus
vv       NARG2 MUTATED NARG2 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(534) Variable = MMEL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMEL1 MUTATED        0      4      1      0      1
  MMEL1 WILD-TYPE     79    122     26     43     11
D534V1, multiclass
        clus
vv       MMEL1 MUTATED MMEL1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             4             122
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMEL1 MUTATED        0      3      0      0
  MMEL1 WILD-TYPE     71     73     34     63
D534V2, multiclass
        clus
vv       MMEL1 MUTATED MMEL1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             3              73
  CLUS_3             0              34
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMEL1 MUTATED        1      4      0      0      1
  MMEL1 WILD-TYPE     15     58     51     65     54
D534V3, multiclass
        clus
vv       MMEL1 MUTATED MMEL1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             4              58
  CLUS_3             0              51
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMEL1 MUTATED        1      4      1      0
  MMEL1 WILD-TYPE     97     40     49     57
D534V4, multiclass
        clus
vv       MMEL1 MUTATED MMEL1 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             4              40
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMEL1 MUTATED        2      0      1      1      0
  MMEL1 WILD-TYPE     60     59     39     36     59
D534V5, multiclass
        clus
vv       MMEL1 MUTATED MMEL1 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMEL1 MUTATED        0      0      4
  MMEL1 WILD-TYPE    106     54     93
D534V6, multiclass
        clus
vv       MMEL1 MUTATED MMEL1 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              54
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMEL1 MUTATED        5      0      1
  MMEL1 WILD-TYPE    118     95     70
D534V7, multiclass
        clus
vv       MMEL1 MUTATED MMEL1 WILD-TYPE
  CLUS_1             5             118
  CLUS_2             0              95
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMEL1 MUTATED        6      0      0
  MMEL1 WILD-TYPE    151     63     69
D534V8, multiclass
        clus
vv       MMEL1 MUTATED MMEL1 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MMEL1 MUTATED        1      0      1      0      0      0
  MMEL1 WILD-TYPE     32     19     58     39     16     45
D534V9, multiclass
[1] "Remove cluster labels:" "MMEL1 MUTATED"         
clus
  MMEL1 MUTATED MMEL1 WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5727 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-EQ-5647 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7998 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132      TCGA-HF-7136 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC      TCGA-HU-A4GD 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-IP-7968 
"MMEL1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MMEL1 MUTATED        1      0      1      0      0      0
  MMEL1 WILD-TYPE     46     39     34     32     23     35
D534V10, multiclass
[1] "Remove cluster labels:" "MMEL1 MUTATED"         
clus
  MMEL1 MUTATED MMEL1 WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5727 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-EQ-5647 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7998 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132      TCGA-HF-7136 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC      TCGA-HU-A4GD 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" "MMEL1 WILD-TYPE" 
     TCGA-IP-7968 
"MMEL1 WILD-TYPE" 

Clustering(535) Variable = DYX1C1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYX1C1 MUTATED        1      7      1      0      1
  DYX1C1 WILD-TYPE     78    119     26     43     11
D535V1, multiclass
        clus
vv       DYX1C1 MUTATED DYX1C1 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              7              119
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYX1C1 MUTATED        1      6      0      1
  DYX1C1 WILD-TYPE     70     70     34     62
D535V2, multiclass
        clus
vv       DYX1C1 MUTATED DYX1C1 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              6               70
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYX1C1 MUTATED        0      3      3      0      2
  DYX1C1 WILD-TYPE     16     59     48     65     53
D535V3, multiclass
        clus
vv       DYX1C1 MUTATED DYX1C1 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              3               59
  CLUS_3              3               48
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYX1C1 MUTATED        1      5      1      1
  DYX1C1 WILD-TYPE     97     39     49     56
D535V4, multiclass
        clus
vv       DYX1C1 MUTATED DYX1C1 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              5               39
  CLUS_3              1               49
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYX1C1 MUTATED        4      3      1      0      1
  DYX1C1 WILD-TYPE     58     56     39     37     58
D535V5, multiclass
        clus
vv       DYX1C1 MUTATED DYX1C1 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              3               56
  CLUS_3              1               39
  CLUS_4              0               37
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DYX1C1 MUTATED        1      3      5
  DYX1C1 WILD-TYPE    105     51     92
D535V6, multiclass
        clus
vv       DYX1C1 MUTATED DYX1C1 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              3               51
  CLUS_3              5               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DYX1C1 MUTATED        6      3      1
  DYX1C1 WILD-TYPE    117     92     70
D535V7, multiclass
        clus
vv       DYX1C1 MUTATED DYX1C1 WILD-TYPE
  CLUS_1              6              117
  CLUS_2              3               92
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DYX1C1 MUTATED        6      3      1
  DYX1C1 WILD-TYPE    151     60     68
D535V8, multiclass
        clus
vv       DYX1C1 MUTATED DYX1C1 WILD-TYPE
  CLUS_1              6              151
  CLUS_2              3               60
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DYX1C1 MUTATED        2      1      3      0      0      2
  DYX1C1 WILD-TYPE     31     18     56     39     16     43
D535V9, multiclass
        clus
vv       DYX1C1 MUTATED DYX1C1 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               18
  CLUS_3              3               56
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              2               43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DYX1C1 MUTATED        2      2      2      1      1      0
  DYX1C1 WILD-TYPE     45     37     33     31     22     35
D535V10, multiclass
        clus
vv       DYX1C1 MUTATED DYX1C1 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              2               37
  CLUS_3              2               33
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(536) Variable = ABCA5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCA5 MUTATED        4     11      1      2      0
  ABCA5 WILD-TYPE     75    115     26     41     12
D536V1, multiclass
        clus
vv       ABCA5 MUTATED ABCA5 WILD-TYPE
  CLUS_1             4              75
  CLUS_2            11             115
  CLUS_3             1              26
  CLUS_4             2              41
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA5 MUTATED        2      9      1      3
  ABCA5 WILD-TYPE     69     67     33     60
D536V2, multiclass
        clus
vv       ABCA5 MUTATED ABCA5 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             9              67
  CLUS_3             1              33
  CLUS_4             3              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCA5 MUTATED        2      4      5      2      3
  ABCA5 WILD-TYPE     14     58     46     63     52
D536V3, multiclass
        clus
vv       ABCA5 MUTATED ABCA5 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             4              58
  CLUS_3             5              46
  CLUS_4             2              63
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA5 MUTATED        7      7      1      1
  ABCA5 WILD-TYPE     91     37     49     56
D536V4, multiclass
        clus
vv       ABCA5 MUTATED ABCA5 WILD-TYPE
  CLUS_1             7              91
  CLUS_2             7              37
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCA5 MUTATED        6      1      0      6      2
  ABCA5 WILD-TYPE     56     58     40     31     57
D536V5, multiclass
        clus
vv       ABCA5 MUTATED ABCA5 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             6              31
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA5 MUTATED        3      1     11
  ABCA5 WILD-TYPE    103     53     86
D536V6, multiclass
        clus
vv       ABCA5 MUTATED ABCA5 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             1              53
  CLUS_3            11              86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA5 MUTATED       14      1      3
  ABCA5 WILD-TYPE    109     94     68
D536V7, multiclass
        clus
vv       ABCA5 MUTATED ABCA5 WILD-TYPE
  CLUS_1            14             109
  CLUS_2             1              94
  CLUS_3             3              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA5 MUTATED       15      1      2
  ABCA5 WILD-TYPE    142     62     67
D536V8, multiclass
        clus
vv       ABCA5 MUTATED ABCA5 WILD-TYPE
  CLUS_1            15             142
  CLUS_2             1              62
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABCA5 MUTATED        4      4      4      0      0      0
  ABCA5 WILD-TYPE     29     15     55     39     16     45
D536V9, multiclass
        clus
vv       ABCA5 MUTATED ABCA5 WILD-TYPE
  CLUS_1             4              29
  CLUS_2             4              15
  CLUS_3             4              55
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABCA5 MUTATED        5      1      3      2      0      1
  ABCA5 WILD-TYPE     42     38     32     30     23     34
D536V10, multiclass
        clus
vv       ABCA5 MUTATED ABCA5 WILD-TYPE
  CLUS_1             5              42
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             2              30
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(537) Variable = NOB1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOB1 MUTATED        0      5      0      1      1
  NOB1 WILD-TYPE     79    121     27     42     11
D537V1, multiclass
        clus
vv       NOB1 MUTATED NOB1 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            5            121
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOB1 MUTATED        0      3      1      0
  NOB1 WILD-TYPE     71     73     33     63
D537V2, multiclass
        clus
vv       NOB1 MUTATED NOB1 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            3             73
  CLUS_3            1             33
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOB1 MUTATED        0      1      0      0      3
  NOB1 WILD-TYPE     16     61     51     65     52
D537V3, multiclass
        clus
vv       NOB1 MUTATED NOB1 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            1             61
  CLUS_3            0             51
  CLUS_4            0             65
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOB1 MUTATED        3      0      1      0
  NOB1 WILD-TYPE     95     44     49     57
D537V4, multiclass
        clus
vv       NOB1 MUTATED NOB1 WILD-TYPE
  CLUS_1            3             95
  CLUS_2            0             44
  CLUS_3            1             49
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOB1 MUTATED        4      1      2      0      0
  NOB1 WILD-TYPE     58     58     38     37     59
D537V5, multiclass
        clus
vv       NOB1 MUTATED NOB1 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            1             58
  CLUS_3            2             38
  CLUS_4            0             37
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOB1 MUTATED        2      0      5
  NOB1 WILD-TYPE    104     54     92
D537V6, multiclass
        clus
vv       NOB1 MUTATED NOB1 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            0             54
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOB1 MUTATED        6      0      1
  NOB1 WILD-TYPE    117     95     70
D537V7, multiclass
        clus
vv       NOB1 MUTATED NOB1 WILD-TYPE
  CLUS_1            6            117
  CLUS_2            0             95
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOB1 MUTATED        6      0      1
  NOB1 WILD-TYPE    151     63     68
D537V8, multiclass
        clus
vv       NOB1 MUTATED NOB1 WILD-TYPE
  CLUS_1            6            151
  CLUS_2            0             63
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NOB1 MUTATED        0      1      0      3      0      0
  NOB1 WILD-TYPE     33     18     59     36     16     45
D537V9, multiclass
        clus
vv       NOB1 MUTATED NOB1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             18
  CLUS_3            0             59
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NOB1 MUTATED        2      0      0      2      0      0
  NOB1 WILD-TYPE     45     39     35     30     23     35
D537V10, multiclass
        clus
vv       NOB1 MUTATED NOB1 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            0             35
  CLUS_4            2             30
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(538) Variable = ELL2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELL2 MUTATED        2     10      0      0      0
  ELL2 WILD-TYPE     77    116     27     43     12
D538V1, multiclass
        clus
vv       ELL2 MUTATED ELL2 WILD-TYPE
  CLUS_1            2             77
  CLUS_2           10            116
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELL2 MUTATED        1      6      0      2
  ELL2 WILD-TYPE     70     70     34     61
D538V2, multiclass
        clus
vv       ELL2 MUTATED ELL2 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            6             70
  CLUS_3            0             34
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELL2 MUTATED        1      4      2      0      5
  ELL2 WILD-TYPE     15     58     49     65     50
D538V3, multiclass
        clus
vv       ELL2 MUTATED ELL2 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            4             58
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            5             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELL2 MUTATED        5      4      3      0
  ELL2 WILD-TYPE     93     40     47     57
D538V4, multiclass
        clus
vv       ELL2 MUTATED ELL2 WILD-TYPE
  CLUS_1            5             93
  CLUS_2            4             40
  CLUS_3            3             47
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELL2 MUTATED        5      1      4      1      0
  ELL2 WILD-TYPE     57     58     36     36     59
D538V5, multiclass
        clus
vv       ELL2 MUTATED ELL2 WILD-TYPE
  CLUS_1            5             57
  CLUS_2            1             58
  CLUS_3            4             36
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELL2 MUTATED        4      1      6
  ELL2 WILD-TYPE    102     53     91
D538V6, multiclass
        clus
vv       ELL2 MUTATED ELL2 WILD-TYPE
  CLUS_1            4            102
  CLUS_2            1             53
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELL2 MUTATED        9      1      2
  ELL2 WILD-TYPE    114     94     69
D538V7, multiclass
        clus
vv       ELL2 MUTATED ELL2 WILD-TYPE
  CLUS_1            9            114
  CLUS_2            1             94
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELL2 MUTATED        9      2      1
  ELL2 WILD-TYPE    148     61     68
D538V8, multiclass
        clus
vv       ELL2 MUTATED ELL2 WILD-TYPE
  CLUS_1            9            148
  CLUS_2            2             61
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ELL2 MUTATED        2      0      4      2      0      1
  ELL2 WILD-TYPE     31     19     55     37     16     44
D538V9, multiclass
        clus
vv       ELL2 MUTATED ELL2 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             19
  CLUS_3            4             55
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ELL2 MUTATED        3      1      4      1      0      0
  ELL2 WILD-TYPE     44     38     31     31     23     35
D538V10, multiclass
        clus
vv       ELL2 MUTATED ELL2 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            1             38
  CLUS_3            4             31
  CLUS_4            1             31
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(539) Variable = MUT MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MUT MUTATED        0      5      0      0      1
  MUT WILD-TYPE     79    121     27     43     11
D539V1, multiclass
        clus
vv       MUT MUTATED MUT WILD-TYPE
  CLUS_1           0            79
  CLUS_2           5           121
  CLUS_3           0            27
  CLUS_4           0            43
  CLUS_5           1            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUT MUTATED        0      4      1      0
  MUT WILD-TYPE     71     72     33     63
D539V2, multiclass
        clus
vv       MUT MUTATED MUT WILD-TYPE
  CLUS_1           0            71
  CLUS_2           4            72
  CLUS_3           1            33
  CLUS_4           0            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MUT MUTATED        0      1      1      0      2
  MUT WILD-TYPE     16     61     50     65     53
D539V3, multiclass
        clus
vv       MUT MUTATED MUT WILD-TYPE
  CLUS_1           0            16
  CLUS_2           1            61
  CLUS_3           1            50
  CLUS_4           0            65
  CLUS_5           2            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUT MUTATED        0      3      0      1
  MUT WILD-TYPE     98     41     50     56
D539V4, multiclass
        clus
vv       MUT MUTATED MUT WILD-TYPE
  CLUS_1           0            98
  CLUS_2           3            41
  CLUS_3           0            50
  CLUS_4           1            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MUT MUTATED        4      0      1      1      0
  MUT WILD-TYPE     58     59     39     36     59
D539V5, multiclass
        clus
vv       MUT MUTATED MUT WILD-TYPE
  CLUS_1           4            58
  CLUS_2           0            59
  CLUS_3           1            39
  CLUS_4           1            36
  CLUS_5           0            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MUT MUTATED        1      0      5
  MUT WILD-TYPE    105     54     92
D539V6, multiclass
        clus
vv       MUT MUTATED MUT WILD-TYPE
  CLUS_1           1           105
  CLUS_2           0            54
  CLUS_3           5            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MUT MUTATED        6      0      0
  MUT WILD-TYPE    117     95     71
D539V7, multiclass
        clus
vv       MUT MUTATED MUT WILD-TYPE
  CLUS_1           6           117
  CLUS_2           0            95
  CLUS_3           0            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MUT MUTATED        6      0      0
  MUT WILD-TYPE    151     63     69
D539V8, multiclass
        clus
vv       MUT MUTATED MUT WILD-TYPE
  CLUS_1           6           151
  CLUS_2           0            63
  CLUS_3           0            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MUT MUTATED        1      1      1      1      0      0
  MUT WILD-TYPE     32     18     58     38     16     45
D539V9, multiclass
        clus
vv       MUT MUTATED MUT WILD-TYPE
  CLUS_1           1            32
  CLUS_2           1            18
  CLUS_3           1            58
  CLUS_4           1            38
  CLUS_5           0            16
  CLUS_6           0            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MUT MUTATED        1      0      0      1      2      0
  MUT WILD-TYPE     46     39     35     31     21     35
D539V10, multiclass
        clus
vv       MUT MUTATED MUT WILD-TYPE
  CLUS_1           1            46
  CLUS_2           0            39
  CLUS_3           0            35
  CLUS_4           1            31
  CLUS_5           2            21
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(540) Variable = NT5DC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NT5DC1 MUTATED        0      5      1      0      0
  NT5DC1 WILD-TYPE     79    121     26     43     12
D540V1, multiclass
        clus
vv       NT5DC1 MUTATED NT5DC1 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              5              121
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NT5DC1 MUTATED        0      5      1      0
  NT5DC1 WILD-TYPE     71     71     33     63
D540V2, multiclass
        clus
vv       NT5DC1 MUTATED NT5DC1 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              5               71
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NT5DC1 MUTATED        0      1      2      0      2
  NT5DC1 WILD-TYPE     16     61     49     65     53
D540V3, multiclass
        clus
vv       NT5DC1 MUTATED NT5DC1 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              1               61
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NT5DC1 MUTATED        0      3      0      2
  NT5DC1 WILD-TYPE     98     41     50     55
D540V4, multiclass
        clus
vv       NT5DC1 MUTATED NT5DC1 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              3               41
  CLUS_3              0               50
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NT5DC1 MUTATED        4      1      0      1      0
  NT5DC1 WILD-TYPE     58     58     40     36     59
D540V5, multiclass
        clus
vv       NT5DC1 MUTATED NT5DC1 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NT5DC1 MUTATED        1      1      4
  NT5DC1 WILD-TYPE    105     53     93
D540V6, multiclass
        clus
vv       NT5DC1 MUTATED NT5DC1 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              1               53
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NT5DC1 MUTATED        4      0      2
  NT5DC1 WILD-TYPE    119     95     69
D540V7, multiclass
        clus
vv       NT5DC1 MUTATED NT5DC1 WILD-TYPE
  CLUS_1              4              119
  CLUS_2              0               95
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NT5DC1 MUTATED        5      0      1
  NT5DC1 WILD-TYPE    152     63     68
D540V8, multiclass
        clus
vv       NT5DC1 MUTATED NT5DC1 WILD-TYPE
  CLUS_1              5              152
  CLUS_2              0               63
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NT5DC1 MUTATED        0      2      2      2      0      0
  NT5DC1 WILD-TYPE     33     17     57     37     16     45
D540V9, multiclass
        clus
vv       NT5DC1 MUTATED NT5DC1 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              2               17
  CLUS_3              2               57
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NT5DC1 MUTATED        3      0      1      1      1      0
  NT5DC1 WILD-TYPE     44     39     34     31     22     35
D540V10, multiclass
        clus
vv       NT5DC1 MUTATED NT5DC1 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(541) Variable = FBN3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBN3 MUTATED        2     17      4      3      2
  FBN3 WILD-TYPE     77    109     23     40     10
D541V1, multiclass
        clus
vv       FBN3 MUTATED FBN3 WILD-TYPE
  CLUS_1            2             77
  CLUS_2           17            109
  CLUS_3            4             23
  CLUS_4            3             40
  CLUS_5            2             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBN3 MUTATED        3     13      3      2
  FBN3 WILD-TYPE     68     63     31     61
D541V2, multiclass
        clus
vv       FBN3 MUTATED FBN3 WILD-TYPE
  CLUS_1            3             68
  CLUS_2           13             63
  CLUS_3            3             31
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBN3 MUTATED        2      7      5      4      6
  FBN3 WILD-TYPE     14     55     46     61     49
D541V3, multiclass
        clus
vv       FBN3 MUTATED FBN3 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            7             55
  CLUS_3            5             46
  CLUS_4            4             61
  CLUS_5            6             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBN3 MUTATED        6     12      3      3
  FBN3 WILD-TYPE     92     32     47     54
D541V4, multiclass
        clus
vv       FBN3 MUTATED FBN3 WILD-TYPE
  CLUS_1            6             92
  CLUS_2           12             32
  CLUS_3            3             47
  CLUS_4            3             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBN3 MUTATED       13      2      1      9      2
  FBN3 WILD-TYPE     49     57     39     28     57
D541V5, multiclass
        clus
vv       FBN3 MUTATED FBN3 WILD-TYPE
  CLUS_1           13             49
  CLUS_2            2             57
  CLUS_3            1             39
  CLUS_4            9             28
  CLUS_5            2             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FBN3 MUTATED        4      4     19
  FBN3 WILD-TYPE    102     50     78
D541V6, multiclass
        clus
vv       FBN3 MUTATED FBN3 WILD-TYPE
  CLUS_1            4            102
  CLUS_2            4             50
  CLUS_3           19             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FBN3 MUTATED       22      4      2
  FBN3 WILD-TYPE    101     91     69
D541V7, multiclass
        clus
vv       FBN3 MUTATED FBN3 WILD-TYPE
  CLUS_1           22            101
  CLUS_2            4             91
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FBN3 MUTATED       24      2      2
  FBN3 WILD-TYPE    133     61     67
D541V8, multiclass
        clus
vv       FBN3 MUTATED FBN3 WILD-TYPE
  CLUS_1           24            133
  CLUS_2            2             61
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBN3 MUTATED        5      1      6      6      0      1
  FBN3 WILD-TYPE     28     18     53     33     16     44
D541V9, multiclass
        clus
vv       FBN3 MUTATED FBN3 WILD-TYPE
  CLUS_1            5             28
  CLUS_2            1             18
  CLUS_3            6             53
  CLUS_4            6             33
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBN3 MUTATED        7      1      5      2      4      0
  FBN3 WILD-TYPE     40     38     30     30     19     35
D541V10, multiclass
        clus
vv       FBN3 MUTATED FBN3 WILD-TYPE
  CLUS_1            7             40
  CLUS_2            1             38
  CLUS_3            5             30
  CLUS_4            2             30
  CLUS_5            4             19
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(542) Variable = ENOSF1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ENOSF1 MUTATED        1      6      0      0      0
  ENOSF1 WILD-TYPE     78    120     27     43     12
D542V1, multiclass
        clus
vv       ENOSF1 MUTATED ENOSF1 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              6              120
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENOSF1 MUTATED        1      4      0      1
  ENOSF1 WILD-TYPE     70     72     34     62
D542V2, multiclass
        clus
vv       ENOSF1 MUTATED ENOSF1 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              4               72
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ENOSF1 MUTATED        1      2      2      0      2
  ENOSF1 WILD-TYPE     15     60     49     65     53
D542V3, multiclass
        clus
vv       ENOSF1 MUTATED ENOSF1 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              2               60
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENOSF1 MUTATED        1      4      0      2
  ENOSF1 WILD-TYPE     97     40     50     55
D542V4, multiclass
        clus
vv       ENOSF1 MUTATED ENOSF1 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              4               40
  CLUS_3              0               50
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ENOSF1 MUTATED        3      1      0      0      1
  ENOSF1 WILD-TYPE     59     58     40     37     58
D542V5, multiclass
        clus
vv       ENOSF1 MUTATED ENOSF1 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              0               37
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENOSF1 MUTATED        2      1      2
  ENOSF1 WILD-TYPE    104     53     95
D542V6, multiclass
        clus
vv       ENOSF1 MUTATED ENOSF1 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              1               53
  CLUS_3              2               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENOSF1 MUTATED        5      1      1
  ENOSF1 WILD-TYPE    118     94     70
D542V7, multiclass
        clus
vv       ENOSF1 MUTATED ENOSF1 WILD-TYPE
  CLUS_1              5              118
  CLUS_2              1               94
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENOSF1 MUTATED        5      0      2
  ENOSF1 WILD-TYPE    152     63     67
D542V8, multiclass
        clus
vv       ENOSF1 MUTATED ENOSF1 WILD-TYPE
  CLUS_1              5              152
  CLUS_2              0               63
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ENOSF1 MUTATED        1      1      2      0      0      1
  ENOSF1 WILD-TYPE     32     18     57     39     16     44
D542V9, multiclass
        clus
vv       ENOSF1 MUTATED ENOSF1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ENOSF1 MUTATED        1      0      1      2      0      1
  ENOSF1 WILD-TYPE     46     39     34     30     23     34
D542V10, multiclass
        clus
vv       ENOSF1 MUTATED ENOSF1 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              2               30
  CLUS_5              0               23
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(543) Variable = ZBTB49 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB49 MUTATED        1      5      0      1      0
  ZBTB49 WILD-TYPE     78    121     27     42     12
D543V1, multiclass
        clus
vv       ZBTB49 MUTATED ZBTB49 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              5              121
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB49 MUTATED        1      4      0      2
  ZBTB49 WILD-TYPE     70     72     34     61
D543V2, multiclass
        clus
vv       ZBTB49 MUTATED ZBTB49 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              4               72
  CLUS_3              0               34
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB49 MUTATED        0      2      1      0      3
  ZBTB49 WILD-TYPE     16     60     50     65     52
D543V3, multiclass
        clus
vv       ZBTB49 MUTATED ZBTB49 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              2               60
  CLUS_3              1               50
  CLUS_4              0               65
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB49 MUTATED        1      1      2      2
  ZBTB49 WILD-TYPE     97     43     48     55
D543V4, multiclass
        clus
vv       ZBTB49 MUTATED ZBTB49 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              1               43
  CLUS_3              2               48
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB49 MUTATED        4      0      0      1      2
  ZBTB49 WILD-TYPE     58     59     40     36     57
D543V5, multiclass
        clus
vv       ZBTB49 MUTATED ZBTB49 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              1               36
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB49 MUTATED        2      0      5
  ZBTB49 WILD-TYPE    104     54     92
D543V6, multiclass
        clus
vv       ZBTB49 MUTATED ZBTB49 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              0               54
  CLUS_3              5               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB49 MUTATED        4      2      1
  ZBTB49 WILD-TYPE    119     93     70
D543V7, multiclass
        clus
vv       ZBTB49 MUTATED ZBTB49 WILD-TYPE
  CLUS_1              4              119
  CLUS_2              2               93
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB49 MUTATED        5      0      2
  ZBTB49 WILD-TYPE    152     63     67
D543V8, multiclass
        clus
vv       ZBTB49 MUTATED ZBTB49 WILD-TYPE
  CLUS_1              5              152
  CLUS_2              0               63
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZBTB49 MUTATED        1      1      2      1      1      1
  ZBTB49 WILD-TYPE     32     18     57     38     15     44
D543V9, multiclass
        clus
vv       ZBTB49 MUTATED ZBTB49 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              1               38
  CLUS_5              1               15
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZBTB49 MUTATED        4      0      1      0      0      2
  ZBTB49 WILD-TYPE     43     39     34     32     23     33
D543V10, multiclass
        clus
vv       ZBTB49 MUTATED ZBTB49 WILD-TYPE
  CLUS_1              4               43
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              2               33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(544) Variable = SLC22A16 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC22A16 MUTATED        0     10      1      0      0
  SLC22A16 WILD-TYPE     79    116     26     43     12
D544V1, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                0                 79
  CLUS_2               10                116
  CLUS_3                1                 26
  CLUS_4                0                 43
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A16 MUTATED        0      7      1      1
  SLC22A16 WILD-TYPE     71     69     33     62
D544V2, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                0                 71
  CLUS_2                7                 69
  CLUS_3                1                 33
  CLUS_4                1                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC22A16 MUTATED        0      5      3      0      1
  SLC22A16 WILD-TYPE     16     57     48     65     54
D544V3, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                5                 57
  CLUS_3                3                 48
  CLUS_4                0                 65
  CLUS_5                1                 54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A16 MUTATED        1      5      3      0
  SLC22A16 WILD-TYPE     97     39     47     57
D544V4, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                1                 97
  CLUS_2                5                 39
  CLUS_3                3                 47
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC22A16 MUTATED        7      1      1      1      0
  SLC22A16 WILD-TYPE     55     58     39     36     59
D544V5, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                7                 55
  CLUS_2                1                 58
  CLUS_3                1                 39
  CLUS_4                1                 36
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC22A16 MUTATED        3      0      7
  SLC22A16 WILD-TYPE    103     54     90
D544V6, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                3                103
  CLUS_2                0                 54
  CLUS_3                7                 90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC22A16 MUTATED        9      1      1
  SLC22A16 WILD-TYPE    114     94     70
D544V7, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                9                114
  CLUS_2                1                 94
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC22A16 MUTATED       10      0      1
  SLC22A16 WILD-TYPE    147     63     68
D544V8, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1               10                147
  CLUS_2                0                 63
  CLUS_3                1                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC22A16 MUTATED        0      2      3      3      0      0
  SLC22A16 WILD-TYPE     33     17     56     36     16     45
D544V9, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                2                 17
  CLUS_3                3                 56
  CLUS_4                3                 36
  CLUS_5                0                 16
  CLUS_6                0                 45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC22A16 MUTATED        4      0      2      0      1      1
  SLC22A16 WILD-TYPE     43     39     33     32     22     34
D544V10, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                4                 43
  CLUS_2                0                 39
  CLUS_3                2                 33
  CLUS_4                0                 32
  CLUS_5                1                 22
  CLUS_6                1                 34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(545) Variable = KCNC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNC1 MUTATED        0      6      0      0      0
  KCNC1 WILD-TYPE     79    120     27     43     12
D545V1, multiclass
        clus
vv       KCNC1 MUTATED KCNC1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNC1 MUTATED        0      6      1      0
  KCNC1 WILD-TYPE     71     70     33     63
D545V2, multiclass
        clus
vv       KCNC1 MUTATED KCNC1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             6              70
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNC1 MUTATED        0      3      2      0      0
  KCNC1 WILD-TYPE     16     59     49     65     55
D545V3, multiclass
        clus
vv       KCNC1 MUTATED KCNC1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              59
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             0              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNC1 MUTATED        0      3      2      0
  KCNC1 WILD-TYPE     98     41     48     57
D545V4, multiclass
        clus
vv       KCNC1 MUTATED KCNC1 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             3              41
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNC1 MUTATED        5      0      0      1      0
  KCNC1 WILD-TYPE     57     59     40     36     59
D545V5, multiclass
        clus
vv       KCNC1 MUTATED KCNC1 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNC1 MUTATED        0      0      6
  KCNC1 WILD-TYPE    106     54     91
D545V6, multiclass
        clus
vv       KCNC1 MUTATED KCNC1 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              54
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNC1 MUTATED        6      1      0
  KCNC1 WILD-TYPE    117     94     71
D545V7, multiclass
        clus
vv       KCNC1 MUTATED KCNC1 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNC1 MUTATED        6      1      0
  KCNC1 WILD-TYPE    151     62     69
D545V8, multiclass
        clus
vv       KCNC1 MUTATED KCNC1 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNC1 MUTATED        2      0      2      2      0      0
  KCNC1 WILD-TYPE     31     19     57     37     16     45
D545V9, multiclass
        clus
vv       KCNC1 MUTATED KCNC1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              19
  CLUS_3             2              57
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNC1 MUTATED        3      0      2      0      1      0
  KCNC1 WILD-TYPE     44     39     33     32     22     35
D545V10, multiclass
        clus
vv       KCNC1 MUTATED KCNC1 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(546) Variable = MZF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MZF1 MUTATED        0      9      1      0      0
  MZF1 WILD-TYPE     79    117     26     43     12
D546V1, multiclass
        clus
vv       MZF1 MUTATED MZF1 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            9            117
  CLUS_3            1             26
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MZF1 MUTATED        2      6      1      1
  MZF1 WILD-TYPE     69     70     33     62
D546V2, multiclass
        clus
vv       MZF1 MUTATED MZF1 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            6             70
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MZF1 MUTATED        2      2      4      0      1
  MZF1 WILD-TYPE     14     60     47     65     54
D546V3, multiclass
        clus
vv       MZF1 MUTATED MZF1 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            2             60
  CLUS_3            4             47
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MZF1 MUTATED        2      3      2      2
  MZF1 WILD-TYPE     96     41     48     55
D546V4, multiclass
        clus
vv       MZF1 MUTATED MZF1 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            3             41
  CLUS_3            2             48
  CLUS_4            2             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MZF1 MUTATED        3      1      2      1      1
  MZF1 WILD-TYPE     59     58     38     36     58
D546V5, multiclass
        clus
vv       MZF1 MUTATED MZF1 WILD-TYPE
  CLUS_1            3             59
  CLUS_2            1             58
  CLUS_3            2             38
  CLUS_4            1             36
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MZF1 MUTATED        2      1      5
  MZF1 WILD-TYPE    104     53     92
D546V6, multiclass
        clus
vv       MZF1 MUTATED MZF1 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            1             53
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MZF1 MUTATED        7      1      2
  MZF1 WILD-TYPE    116     94     69
D546V7, multiclass
        clus
vv       MZF1 MUTATED MZF1 WILD-TYPE
  CLUS_1            7            116
  CLUS_2            1             94
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MZF1 MUTATED        7      1      2
  MZF1 WILD-TYPE    150     62     67
D546V8, multiclass
        clus
vv       MZF1 MUTATED MZF1 WILD-TYPE
  CLUS_1            7            150
  CLUS_2            1             62
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MZF1 MUTATED        0      2      6      1      1      0
  MZF1 WILD-TYPE     33     17     53     38     15     45
D546V9, multiclass
        clus
vv       MZF1 MUTATED MZF1 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            2             17
  CLUS_3            6             53
  CLUS_4            1             38
  CLUS_5            1             15
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MZF1 MUTATED        2      0      4      2      1      1
  MZF1 WILD-TYPE     45     39     31     30     22     34
D546V10, multiclass
        clus
vv       MZF1 MUTATED MZF1 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            4             31
  CLUS_4            2             30
  CLUS_5            1             22
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(547) Variable = MGA MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MGA MUTATED        0     16      4      2      1
  MGA WILD-TYPE     79    110     23     41     11
D547V1, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           0            79
  CLUS_2          16           110
  CLUS_3           4            23
  CLUS_4           2            41
  CLUS_5           1            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGA MUTATED        0     11      6      2
  MGA WILD-TYPE     71     65     28     61
D547V2, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           0            71
  CLUS_2          11            65
  CLUS_3           6            28
  CLUS_4           2            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MGA MUTATED        2     11      5      0      4
  MGA WILD-TYPE     14     51     46     65     51
D547V3, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           2            14
  CLUS_2          11            51
  CLUS_3           5            46
  CLUS_4           0            65
  CLUS_5           4            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGA MUTATED        6      9      7      0
  MGA WILD-TYPE     92     35     43     57
D547V4, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           6            92
  CLUS_2           9            35
  CLUS_3           7            43
  CLUS_4           0            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MGA MUTATED       15      0      1      4      0
  MGA WILD-TYPE     47     59     39     33     59
D547V5, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1          15            47
  CLUS_2           0            59
  CLUS_3           1            39
  CLUS_4           4            33
  CLUS_5           0            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MGA MUTATED        7      0     13
  MGA WILD-TYPE     99     54     84
D547V6, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           7            99
  CLUS_2           0            54
  CLUS_3          13            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MGA MUTATED       22      1      1
  MGA WILD-TYPE    101     94     70
D547V7, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1          22           101
  CLUS_2           1            94
  CLUS_3           1            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MGA MUTATED       23      1      0
  MGA WILD-TYPE    134     62     69
D547V8, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1          23           134
  CLUS_2           1            62
  CLUS_3           0            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MGA MUTATED        2      2      9      2      0      1
  MGA WILD-TYPE     31     17     50     37     16     44
D547V9, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           2            31
  CLUS_2           2            17
  CLUS_3           9            50
  CLUS_4           2            37
  CLUS_5           0            16
  CLUS_6           1            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MGA MUTATED        6      1      6      2      1      0
  MGA WILD-TYPE     41     38     29     30     22     35
D547V10, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           6            41
  CLUS_2           1            38
  CLUS_3           6            29
  CLUS_4           2            30
  CLUS_5           1            22
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(548) Variable = GTF3C4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GTF3C4 MUTATED        0     12      0      0      0
  GTF3C4 WILD-TYPE     79    114     27     43     12
D548V1, multiclass
        clus
vv       GTF3C4 MUTATED GTF3C4 WILD-TYPE
  CLUS_1              0               79
  CLUS_2             12              114
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF3C4 MUTATED        0      8      1      1
  GTF3C4 WILD-TYPE     71     68     33     62
D548V2, multiclass
        clus
vv       GTF3C4 MUTATED GTF3C4 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              8               68
  CLUS_3              1               33
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GTF3C4 MUTATED        0      6      3      1      1
  GTF3C4 WILD-TYPE     16     56     48     64     54
D548V3, multiclass
        clus
vv       GTF3C4 MUTATED GTF3C4 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              6               56
  CLUS_3              3               48
  CLUS_4              1               64
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF3C4 MUTATED        1      3      6      1
  GTF3C4 WILD-TYPE     97     41     44     56
D548V4, multiclass
        clus
vv       GTF3C4 MUTATED GTF3C4 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              3               41
  CLUS_3              6               44
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GTF3C4 MUTATED        7      2      0      1      0
  GTF3C4 WILD-TYPE     55     57     40     36     59
D548V5, multiclass
        clus
vv       GTF3C4 MUTATED GTF3C4 WILD-TYPE
  CLUS_1              7               55
  CLUS_2              2               57
  CLUS_3              0               40
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GTF3C4 MUTATED        2      1      7
  GTF3C4 WILD-TYPE    104     53     90
D548V6, multiclass
        clus
vv       GTF3C4 MUTATED GTF3C4 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              1               53
  CLUS_3              7               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GTF3C4 MUTATED        9      3      0
  GTF3C4 WILD-TYPE    114     92     71
D548V7, multiclass
        clus
vv       GTF3C4 MUTATED GTF3C4 WILD-TYPE
  CLUS_1              9              114
  CLUS_2              3               92
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GTF3C4 MUTATED        9      3      0
  GTF3C4 WILD-TYPE    148     60     69
D548V8, multiclass
        clus
vv       GTF3C4 MUTATED GTF3C4 WILD-TYPE
  CLUS_1              9              148
  CLUS_2              3               60
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GTF3C4 MUTATED        2      0      5      2      0      0
  GTF3C4 WILD-TYPE     31     19     54     37     16     45
D548V9, multiclass
        clus
vv       GTF3C4 MUTATED GTF3C4 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               19
  CLUS_3              5               54
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GTF3C4 MUTATED        4      0      3      1      1      0
  GTF3C4 WILD-TYPE     43     39     32     31     22     35
D548V10, multiclass
        clus
vv       GTF3C4 MUTATED GTF3C4 WILD-TYPE
  CLUS_1              4               43
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(549) Variable = GPATCH4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPATCH4 MUTATED        3      4      1      0      0
  GPATCH4 WILD-TYPE     76    122     26     43     12
D549V1, multiclass
        clus
vv       GPATCH4 MUTATED GPATCH4 WILD-TYPE
  CLUS_1               3                76
  CLUS_2               4               122
  CLUS_3               1                26
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPATCH4 MUTATED        2      4      0      0
  GPATCH4 WILD-TYPE     69     72     34     63
D549V2, multiclass
        clus
vv       GPATCH4 MUTATED GPATCH4 WILD-TYPE
  CLUS_1               2                69
  CLUS_2               4                72
  CLUS_3               0                34
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPATCH4 MUTATED        0      3      1      0      1
  GPATCH4 WILD-TYPE     16     59     50     65     54
D549V3, multiclass
        clus
vv       GPATCH4 MUTATED GPATCH4 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               3                59
  CLUS_3               1                50
  CLUS_4               0                65
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPATCH4 MUTATED        1      3      1      0
  GPATCH4 WILD-TYPE     97     41     49     57
D549V4, multiclass
        clus
vv       GPATCH4 MUTATED GPATCH4 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               3                41
  CLUS_3               1                49
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPATCH4 MUTATED        4      0      0      1      3
  GPATCH4 WILD-TYPE     58     59     40     36     56
D549V5, multiclass
        clus
vv       GPATCH4 MUTATED GPATCH4 WILD-TYPE
  CLUS_1               4                58
  CLUS_2               0                59
  CLUS_3               0                40
  CLUS_4               1                36
  CLUS_5               3                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GPATCH4 MUTATED        4      0      4
  GPATCH4 WILD-TYPE    102     54     93
D549V6, multiclass
        clus
vv       GPATCH4 MUTATED GPATCH4 WILD-TYPE
  CLUS_1               4               102
  CLUS_2               0                54
  CLUS_3               4                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GPATCH4 MUTATED        4      0      4
  GPATCH4 WILD-TYPE    119     95     67
D549V7, multiclass
        clus
vv       GPATCH4 MUTATED GPATCH4 WILD-TYPE
  CLUS_1               4               119
  CLUS_2               0                95
  CLUS_3               4                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GPATCH4 MUTATED        6      0      2
  GPATCH4 WILD-TYPE    151     63     67
D549V8, multiclass
        clus
vv       GPATCH4 MUTATED GPATCH4 WILD-TYPE
  CLUS_1               6               151
  CLUS_2               0                63
  CLUS_3               2                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPATCH4 MUTATED        0      2      1      3      0      0
  GPATCH4 WILD-TYPE     33     17     58     36     16     45
D549V9, multiclass
        clus
vv       GPATCH4 MUTATED GPATCH4 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               2                17
  CLUS_3               1                58
  CLUS_4               3                36
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPATCH4 MUTATED        5      0      0      1      0      0
  GPATCH4 WILD-TYPE     42     39     35     31     23     35
D549V10, multiclass
        clus
vv       GPATCH4 MUTATED GPATCH4 WILD-TYPE
  CLUS_1               5                42
  CLUS_2               0                39
  CLUS_3               0                35
  CLUS_4               1                31
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(550) Variable = NOS3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOS3 MUTATED        2      6      0      1      1
  NOS3 WILD-TYPE     77    120     27     42     11
D550V1, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            2             77
  CLUS_2            6            120
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOS3 MUTATED        0      5      1      2
  NOS3 WILD-TYPE     71     71     33     61
D550V2, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            5             71
  CLUS_3            1             33
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOS3 MUTATED        1      5      1      0      1
  NOS3 WILD-TYPE     15     57     50     65     54
D550V3, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            5             57
  CLUS_3            1             50
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOS3 MUTATED        1      4      3      0
  NOS3 WILD-TYPE     97     40     47     57
D550V4, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            1             97
  CLUS_2            4             40
  CLUS_3            3             47
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOS3 MUTATED        4      0      0      5      1
  NOS3 WILD-TYPE     58     59     40     32     58
D550V5, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            5             32
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOS3 MUTATED        2      0      8
  NOS3 WILD-TYPE    104     54     89
D550V6, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            0             54
  CLUS_3            8             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOS3 MUTATED        8      0      2
  NOS3 WILD-TYPE    115     95     69
D550V7, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            8            115
  CLUS_2            0             95
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOS3 MUTATED        8      1      1
  NOS3 WILD-TYPE    149     62     68
D550V8, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            8            149
  CLUS_2            1             62
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NOS3 MUTATED        2      0      3      2      0      0
  NOS3 WILD-TYPE     31     19     56     37     16     45
D550V9, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             19
  CLUS_3            3             56
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NOS3 MUTATED        3      0      1      1      1      1
  NOS3 WILD-TYPE     44     39     34     31     22     34
D550V10, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(551) Variable = IK MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IK MUTATED        1      5      0      0      0
  IK WILD-TYPE     78    121     27     43     12
D551V1, multiclass
        clus
vv       IK MUTATED IK WILD-TYPE
  CLUS_1          1           78
  CLUS_2          5          121
  CLUS_3          0           27
  CLUS_4          0           43
  CLUS_5          0           12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IK MUTATED        1      2      0      1
  IK WILD-TYPE     70     74     34     62
D551V2, multiclass
        clus
vv       IK MUTATED IK WILD-TYPE
  CLUS_1          1           70
  CLUS_2          2           74
  CLUS_3          0           34
  CLUS_4          1           62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IK MUTATED        0      3      3      0      0
  IK WILD-TYPE     16     59     48     65     55
D551V3, multiclass
        clus
vv       IK MUTATED IK WILD-TYPE
  CLUS_1          0           16
  CLUS_2          3           59
  CLUS_3          3           48
  CLUS_4          0           65
  CLUS_5          0           55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IK MUTATED        2      3      0      1
  IK WILD-TYPE     96     41     50     56
D551V4, multiclass
        clus
vv       IK MUTATED IK WILD-TYPE
  CLUS_1          2           96
  CLUS_2          3           41
  CLUS_3          0           50
  CLUS_4          1           56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IK MUTATED        2      1      1      1      1
  IK WILD-TYPE     60     58     39     36     58
D551V5, multiclass
        clus
vv       IK MUTATED IK WILD-TYPE
  CLUS_1          2           60
  CLUS_2          1           58
  CLUS_3          1           39
  CLUS_4          1           36
  CLUS_5          1           58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  IK MUTATED        2      1      3
  IK WILD-TYPE    104     53     94
D551V6, multiclass
        clus
vv       IK MUTATED IK WILD-TYPE
  CLUS_1          2          104
  CLUS_2          1           53
  CLUS_3          3           94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  IK MUTATED        3      1      2
  IK WILD-TYPE    120     94     69
D551V7, multiclass
        clus
vv       IK MUTATED IK WILD-TYPE
  CLUS_1          3          120
  CLUS_2          1           94
  CLUS_3          2           69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  IK MUTATED        3      0      3
  IK WILD-TYPE    154     63     66
D551V8, multiclass
        clus
vv       IK MUTATED IK WILD-TYPE
  CLUS_1          3          154
  CLUS_2          0           63
  CLUS_3          3           66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IK MUTATED        0      1      1      1      0      0
  IK WILD-TYPE     33     18     58     38     16     45
D551V9, multiclass
        clus
vv       IK MUTATED IK WILD-TYPE
  CLUS_1          0           33
  CLUS_2          1           18
  CLUS_3          1           58
  CLUS_4          1           38
  CLUS_5          0           16
  CLUS_6          0           45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IK MUTATED        0      0      1      1      0      1
  IK WILD-TYPE     47     39     34     31     23     34
D551V10, multiclass
        clus
vv       IK MUTATED IK WILD-TYPE
  CLUS_1          0           47
  CLUS_2          0           39
  CLUS_3          1           34
  CLUS_4          1           31
  CLUS_5          0           23
  CLUS_6          1           34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(552) Variable = ELOVL2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELOVL2 MUTATED        2      4      0      1      0
  ELOVL2 WILD-TYPE     77    122     27     42     12
D552V1, multiclass
        clus
vv       ELOVL2 MUTATED ELOVL2 WILD-TYPE
  CLUS_1              2               77
  CLUS_2              4              122
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELOVL2 MUTATED        2      2      2      0
  ELOVL2 WILD-TYPE     69     74     32     63
D552V2, multiclass
        clus
vv       ELOVL2 MUTATED ELOVL2 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              2               74
  CLUS_3              2               32
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELOVL2 MUTATED        0      1      3      0      2
  ELOVL2 WILD-TYPE     16     61     48     65     53
D552V3, multiclass
        clus
vv       ELOVL2 MUTATED ELOVL2 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              1               61
  CLUS_3              3               48
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELOVL2 MUTATED        1      4      0      1
  ELOVL2 WILD-TYPE     97     40     50     56
D552V4, multiclass
        clus
vv       ELOVL2 MUTATED ELOVL2 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              4               40
  CLUS_3              0               50
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELOVL2 MUTATED        3      0      1      0      2
  ELOVL2 WILD-TYPE     59     59     39     37     57
D552V5, multiclass
        clus
vv       ELOVL2 MUTATED ELOVL2 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              0               37
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ELOVL2 MUTATED        4      0      2
  ELOVL2 WILD-TYPE    102     54     95
D552V6, multiclass
        clus
vv       ELOVL2 MUTATED ELOVL2 WILD-TYPE
  CLUS_1              4              102
  CLUS_2              0               54
  CLUS_3              2               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ELOVL2 MUTATED        5      0      2
  ELOVL2 WILD-TYPE    118     95     69
D552V7, multiclass
        clus
vv       ELOVL2 MUTATED ELOVL2 WILD-TYPE
  CLUS_1              5              118
  CLUS_2              0               95
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ELOVL2 MUTATED        5      0      2
  ELOVL2 WILD-TYPE    152     63     67
D552V8, multiclass
        clus
vv       ELOVL2 MUTATED ELOVL2 WILD-TYPE
  CLUS_1              5              152
  CLUS_2              0               63
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ELOVL2 MUTATED        2      0      3      0      0      0
  ELOVL2 WILD-TYPE     31     19     56     39     16     45
D552V9, multiclass
        clus
vv       ELOVL2 MUTATED ELOVL2 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               19
  CLUS_3              3               56
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ELOVL2 MUTATED        0      0      1      1      1      2
  ELOVL2 WILD-TYPE     47     39     34     31     22     33
D552V10, multiclass
        clus
vv       ELOVL2 MUTATED ELOVL2 WILD-TYPE
  CLUS_1              0               47
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              2               33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(553) Variable = SMARCAL1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCAL1 MUTATED        2      8      0      3      0
  SMARCAL1 WILD-TYPE     77    118     27     40     12
D553V1, multiclass
        clus
vv       SMARCAL1 MUTATED SMARCAL1 WILD-TYPE
  CLUS_1                2                 77
  CLUS_2                8                118
  CLUS_3                0                 27
  CLUS_4                3                 40
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCAL1 MUTATED        2      8      0      0
  SMARCAL1 WILD-TYPE     69     68     34     63
D553V2, multiclass
        clus
vv       SMARCAL1 MUTATED SMARCAL1 WILD-TYPE
  CLUS_1                2                 69
  CLUS_2                8                 68
  CLUS_3                0                 34
  CLUS_4                0                 63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCAL1 MUTATED        1      2      2      2      3
  SMARCAL1 WILD-TYPE     15     60     49     63     52
D553V3, multiclass
        clus
vv       SMARCAL1 MUTATED SMARCAL1 WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                2                 60
  CLUS_3                2                 49
  CLUS_4                2                 63
  CLUS_5                3                 52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCAL1 MUTATED        2      5      1      2
  SMARCAL1 WILD-TYPE     96     39     49     55
D553V4, multiclass
        clus
vv       SMARCAL1 MUTATED SMARCAL1 WILD-TYPE
  CLUS_1                2                 96
  CLUS_2                5                 39
  CLUS_3                1                 49
  CLUS_4                2                 55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCAL1 MUTATED        3      1      2      1      2
  SMARCAL1 WILD-TYPE     59     58     38     36     57
D553V5, multiclass
        clus
vv       SMARCAL1 MUTATED SMARCAL1 WILD-TYPE
  CLUS_1                3                 59
  CLUS_2                1                 58
  CLUS_3                2                 38
  CLUS_4                1                 36
  CLUS_5                2                 57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SMARCAL1 MUTATED        3      0      6
  SMARCAL1 WILD-TYPE    103     54     91
D553V6, multiclass
        clus
vv       SMARCAL1 MUTATED SMARCAL1 WILD-TYPE
  CLUS_1                3                103
  CLUS_2                0                 54
  CLUS_3                6                 91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SMARCAL1 MUTATED        8      2      3
  SMARCAL1 WILD-TYPE    115     93     68
D553V7, multiclass
        clus
vv       SMARCAL1 MUTATED SMARCAL1 WILD-TYPE
  CLUS_1                8                115
  CLUS_2                2                 93
  CLUS_3                3                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SMARCAL1 MUTATED        9      1      3
  SMARCAL1 WILD-TYPE    148     62     66
D553V8, multiclass
        clus
vv       SMARCAL1 MUTATED SMARCAL1 WILD-TYPE
  CLUS_1                9                148
  CLUS_2                1                 62
  CLUS_3                3                 66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMARCAL1 MUTATED        2      1      3      2      1      1
  SMARCAL1 WILD-TYPE     31     18     56     37     15     44
D553V9, multiclass
        clus
vv       SMARCAL1 MUTATED SMARCAL1 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                1                 18
  CLUS_3                3                 56
  CLUS_4                2                 37
  CLUS_5                1                 15
  CLUS_6                1                 44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMARCAL1 MUTATED        4      1      2      1      0      2
  SMARCAL1 WILD-TYPE     43     38     33     31     23     33
D553V10, multiclass
        clus
vv       SMARCAL1 MUTATED SMARCAL1 WILD-TYPE
  CLUS_1                4                 43
  CLUS_2                1                 38
  CLUS_3                2                 33
  CLUS_4                1                 31
  CLUS_5                0                 23
  CLUS_6                2                 33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(554) Variable = SLC38A6 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC38A6 MUTATED        1      6      1      0      0
  SLC38A6 WILD-TYPE     78    120     26     43     12
D554V1, multiclass
        clus
vv       SLC38A6 MUTATED SLC38A6 WILD-TYPE
  CLUS_1               1                78
  CLUS_2               6               120
  CLUS_3               1                26
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC38A6 MUTATED        0      7      0      1
  SLC38A6 WILD-TYPE     71     69     34     62
D554V2, multiclass
        clus
vv       SLC38A6 MUTATED SLC38A6 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               7                69
  CLUS_3               0                34
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC38A6 MUTATED        1      3      1      0      1
  SLC38A6 WILD-TYPE     15     59     50     65     54
D554V3, multiclass
        clus
vv       SLC38A6 MUTATED SLC38A6 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               3                59
  CLUS_3               1                50
  CLUS_4               0                65
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC38A6 MUTATED        1      3      2      0
  SLC38A6 WILD-TYPE     97     41     48     57
D554V4, multiclass
        clus
vv       SLC38A6 MUTATED SLC38A6 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               3                41
  CLUS_3               2                48
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC38A6 MUTATED        4      0      1      2      0
  SLC38A6 WILD-TYPE     58     59     39     35     59
D554V5, multiclass
        clus
vv       SLC38A6 MUTATED SLC38A6 WILD-TYPE
  CLUS_1               4                58
  CLUS_2               0                59
  CLUS_3               1                39
  CLUS_4               2                35
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC38A6 MUTATED        1      0      6
  SLC38A6 WILD-TYPE    105     54     91
D554V6, multiclass
        clus
vv       SLC38A6 MUTATED SLC38A6 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               0                54
  CLUS_3               6                91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC38A6 MUTATED        6      1      1
  SLC38A6 WILD-TYPE    117     94     70
D554V7, multiclass
        clus
vv       SLC38A6 MUTATED SLC38A6 WILD-TYPE
  CLUS_1               6               117
  CLUS_2               1                94
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC38A6 MUTATED        7      1      0
  SLC38A6 WILD-TYPE    150     62     69
D554V8, multiclass
        clus
vv       SLC38A6 MUTATED SLC38A6 WILD-TYPE
  CLUS_1               7               150
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC38A6 MUTATED        0      1      3      4      0      0
  SLC38A6 WILD-TYPE     33     18     56     35     16     45
D554V9, multiclass
        clus
vv       SLC38A6 MUTATED SLC38A6 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                18
  CLUS_3               3                56
  CLUS_4               4                35
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC38A6 MUTATED        3      0      3      1      1      0
  SLC38A6 WILD-TYPE     44     39     32     31     22     35
D554V10, multiclass
        clus
vv       SLC38A6 MUTATED SLC38A6 WILD-TYPE
  CLUS_1               3                44
  CLUS_2               0                39
  CLUS_3               3                32
  CLUS_4               1                31
  CLUS_5               1                22
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(555) Variable = BCL9 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL9 MUTATED        2     12      2      3      0
  BCL9 WILD-TYPE     77    114     25     40     12
D555V1, multiclass
        clus
vv       BCL9 MUTATED BCL9 WILD-TYPE
  CLUS_1            2             77
  CLUS_2           12            114
  CLUS_3            2             25
  CLUS_4            3             40
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL9 MUTATED        2      9      1      2
  BCL9 WILD-TYPE     69     67     33     61
D555V2, multiclass
        clus
vv       BCL9 MUTATED BCL9 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            9             67
  CLUS_3            1             33
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL9 MUTATED        2      6      2      1      3
  BCL9 WILD-TYPE     14     56     49     64     52
D555V3, multiclass
        clus
vv       BCL9 MUTATED BCL9 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            6             56
  CLUS_3            2             49
  CLUS_4            1             64
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL9 MUTATED        2      6      5      1
  BCL9 WILD-TYPE     96     38     45     56
D555V4, multiclass
        clus
vv       BCL9 MUTATED BCL9 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            6             38
  CLUS_3            5             45
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL9 MUTATED       11      1      2      4      1
  BCL9 WILD-TYPE     51     58     38     33     58
D555V5, multiclass
        clus
vv       BCL9 MUTATED BCL9 WILD-TYPE
  CLUS_1           11             51
  CLUS_2            1             58
  CLUS_3            2             38
  CLUS_4            4             33
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCL9 MUTATED        5      1     13
  BCL9 WILD-TYPE    101     53     84
D555V6, multiclass
        clus
vv       BCL9 MUTATED BCL9 WILD-TYPE
  CLUS_1            5            101
  CLUS_2            1             53
  CLUS_3           13             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCL9 MUTATED       15      2      2
  BCL9 WILD-TYPE    108     93     69
D555V7, multiclass
        clus
vv       BCL9 MUTATED BCL9 WILD-TYPE
  CLUS_1           15            108
  CLUS_2            2             93
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCL9 MUTATED       16      1      2
  BCL9 WILD-TYPE    141     62     67
D555V8, multiclass
        clus
vv       BCL9 MUTATED BCL9 WILD-TYPE
  CLUS_1           16            141
  CLUS_2            1             62
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCL9 MUTATED        2      2      5      4      0      0
  BCL9 WILD-TYPE     31     17     54     35     16     45
D555V9, multiclass
        clus
vv       BCL9 MUTATED BCL9 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            2             17
  CLUS_3            5             54
  CLUS_4            4             35
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCL9 MUTATED        4      0      4      2      2      1
  BCL9 WILD-TYPE     43     39     31     30     21     34
D555V10, multiclass
        clus
vv       BCL9 MUTATED BCL9 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            0             39
  CLUS_3            4             31
  CLUS_4            2             30
  CLUS_5            2             21
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(556) Variable = CLIP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLIP1 MUTATED        3      8      0      2      1
  CLIP1 WILD-TYPE     76    118     27     41     11
D556V1, multiclass
        clus
vv       CLIP1 MUTATED CLIP1 WILD-TYPE
  CLUS_1             3              76
  CLUS_2             8             118
  CLUS_3             0              27
  CLUS_4             2              41
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLIP1 MUTATED        3      8      2      0
  CLIP1 WILD-TYPE     68     68     32     63
D556V2, multiclass
        clus
vv       CLIP1 MUTATED CLIP1 WILD-TYPE
  CLUS_1             3              68
  CLUS_2             8              68
  CLUS_3             2              32
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLIP1 MUTATED        1      4      4      1      3
  CLIP1 WILD-TYPE     15     58     47     64     52
D556V3, multiclass
        clus
vv       CLIP1 MUTATED CLIP1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             4              58
  CLUS_3             4              47
  CLUS_4             1              64
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLIP1 MUTATED        2      6      4      1
  CLIP1 WILD-TYPE     96     38     46     56
D556V4, multiclass
        clus
vv       CLIP1 MUTATED CLIP1 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             6              38
  CLUS_3             4              46
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLIP1 MUTATED        5      2      0      4      3
  CLIP1 WILD-TYPE     57     57     40     33     56
D556V5, multiclass
        clus
vv       CLIP1 MUTATED CLIP1 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             2              57
  CLUS_3             0              40
  CLUS_4             4              33
  CLUS_5             3              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLIP1 MUTATED        2      3      9
  CLIP1 WILD-TYPE    104     51     88
D556V6, multiclass
        clus
vv       CLIP1 MUTATED CLIP1 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             3              51
  CLUS_3             9              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLIP1 MUTATED        9      3      3
  CLIP1 WILD-TYPE    114     92     68
D556V7, multiclass
        clus
vv       CLIP1 MUTATED CLIP1 WILD-TYPE
  CLUS_1             9             114
  CLUS_2             3              92
  CLUS_3             3              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLIP1 MUTATED       11      1      3
  CLIP1 WILD-TYPE    146     62     66
D556V8, multiclass
        clus
vv       CLIP1 MUTATED CLIP1 WILD-TYPE
  CLUS_1            11             146
  CLUS_2             1              62
  CLUS_3             3              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CLIP1 MUTATED        3      0      3      3      0      2
  CLIP1 WILD-TYPE     30     19     56     36     16     43
D556V9, multiclass
        clus
vv       CLIP1 MUTATED CLIP1 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             0              19
  CLUS_3             3              56
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             2              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CLIP1 MUTATED        4      2      1      2      2      0
  CLIP1 WILD-TYPE     43     37     34     30     21     35
D556V10, multiclass
        clus
vv       CLIP1 MUTATED CLIP1 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             2              37
  CLUS_3             1              34
  CLUS_4             2              30
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(557) Variable = AMPD3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMPD3 MUTATED        1     13      4      1      0
  AMPD3 WILD-TYPE     78    113     23     42     12
D557V1, multiclass
        clus
vv       AMPD3 MUTATED AMPD3 WILD-TYPE
  CLUS_1             1              78
  CLUS_2            13             113
  CLUS_3             4              23
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMPD3 MUTATED        0     11      3      1
  AMPD3 WILD-TYPE     71     65     31     62
D557V2, multiclass
        clus
vv       AMPD3 MUTATED AMPD3 WILD-TYPE
  CLUS_1             0              71
  CLUS_2            11              65
  CLUS_3             3              31
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMPD3 MUTATED        1      6      7      1      3
  AMPD3 WILD-TYPE     15     56     44     64     52
D557V3, multiclass
        clus
vv       AMPD3 MUTATED AMPD3 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             6              56
  CLUS_3             7              44
  CLUS_4             1              64
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMPD3 MUTATED        4     10      2      2
  AMPD3 WILD-TYPE     94     34     48     55
D557V4, multiclass
        clus
vv       AMPD3 MUTATED AMPD3 WILD-TYPE
  CLUS_1             4              94
  CLUS_2            10              34
  CLUS_3             2              48
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMPD3 MUTATED        4      1      4      7      0
  AMPD3 WILD-TYPE     58     58     36     30     59
D557V5, multiclass
        clus
vv       AMPD3 MUTATED AMPD3 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             1              58
  CLUS_3             4              36
  CLUS_4             7              30
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AMPD3 MUTATED        3      1     12
  AMPD3 WILD-TYPE    103     53     85
D557V6, multiclass
        clus
vv       AMPD3 MUTATED AMPD3 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             1              53
  CLUS_3            12              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AMPD3 MUTATED       15      4      0
  AMPD3 WILD-TYPE    108     91     71
D557V7, multiclass
        clus
vv       AMPD3 MUTATED AMPD3 WILD-TYPE
  CLUS_1            15             108
  CLUS_2             4              91
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AMPD3 MUTATED       16      2      1
  AMPD3 WILD-TYPE    141     61     68
D557V8, multiclass
        clus
vv       AMPD3 MUTATED AMPD3 WILD-TYPE
  CLUS_1            16             141
  CLUS_2             2              61
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMPD3 MUTATED        1      3      6      2      0      2
  AMPD3 WILD-TYPE     32     16     53     37     16     43
D557V9, multiclass
        clus
vv       AMPD3 MUTATED AMPD3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             3              16
  CLUS_3             6              53
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             2              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMPD3 MUTATED        3      1      4      1      4      1
  AMPD3 WILD-TYPE     44     38     31     31     19     34
D557V10, multiclass
        clus
vv       AMPD3 MUTATED AMPD3 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             1              38
  CLUS_3             4              31
  CLUS_4             1              31
  CLUS_5             4              19
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(558) Variable = DMC1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DMC1 MUTATED        2      5      0      0      0
  DMC1 WILD-TYPE     77    121     27     43     12
D558V1, multiclass
        clus
vv       DMC1 MUTATED DMC1 WILD-TYPE
  CLUS_1            2             77
  CLUS_2            5            121
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DMC1 MUTATED        0      4      2      1
  DMC1 WILD-TYPE     71     72     32     62
D558V2, multiclass
        clus
vv       DMC1 MUTATED DMC1 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            4             72
  CLUS_3            2             32
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DMC1 MUTATED        2      2      1      1      1
  DMC1 WILD-TYPE     14     60     50     64     54
D558V3, multiclass
        clus
vv       DMC1 MUTATED DMC1 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            2             60
  CLUS_3            1             50
  CLUS_4            1             64
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DMC1 MUTATED        3      0      2      2
  DMC1 WILD-TYPE     95     44     48     55
D558V4, multiclass
        clus
vv       DMC1 MUTATED DMC1 WILD-TYPE
  CLUS_1            3             95
  CLUS_2            0             44
  CLUS_3            2             48
  CLUS_4            2             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DMC1 MUTATED        5      2      0      1      0
  DMC1 WILD-TYPE     57     57     40     36     59
D558V5, multiclass
        clus
vv       DMC1 MUTATED DMC1 WILD-TYPE
  CLUS_1            5             57
  CLUS_2            2             57
  CLUS_3            0             40
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DMC1 MUTATED        3      2      3
  DMC1 WILD-TYPE    103     52     94
D558V6, multiclass
        clus
vv       DMC1 MUTATED DMC1 WILD-TYPE
  CLUS_1            3            103
  CLUS_2            2             52
  CLUS_3            3             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DMC1 MUTATED        5      2      1
  DMC1 WILD-TYPE    118     93     70
D558V7, multiclass
        clus
vv       DMC1 MUTATED DMC1 WILD-TYPE
  CLUS_1            5            118
  CLUS_2            2             93
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DMC1 MUTATED        7      1      0
  DMC1 WILD-TYPE    150     62     69
D558V8, multiclass
        clus
vv       DMC1 MUTATED DMC1 WILD-TYPE
  CLUS_1            7            150
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DMC1 MUTATED        1      1      3      1      0      0
  DMC1 WILD-TYPE     32     18     56     38     16     45
D558V9, multiclass
        clus
vv       DMC1 MUTATED DMC1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            3             56
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DMC1 MUTATED        1      0      1      0      4      0
  DMC1 WILD-TYPE     46     39     34     32     19     35
D558V10, multiclass
        clus
vv       DMC1 MUTATED DMC1 WILD-TYPE
  CLUS_1            1             46
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            0             32
  CLUS_5            4             19
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(559) Variable = USP8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP8 MUTATED        1      6      0      0      0
  USP8 WILD-TYPE     78    120     27     43     12
D559V1, multiclass
        clus
vv       USP8 MUTATED USP8 WILD-TYPE
  CLUS_1            1             78
  CLUS_2            6            120
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP8 MUTATED        0      3      1      0
  USP8 WILD-TYPE     71     73     33     63
D559V2, multiclass
        clus
vv       USP8 MUTATED USP8 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            3             73
  CLUS_3            1             33
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP8 MUTATED        0      2      2      0      1
  USP8 WILD-TYPE     16     60     49     65     54
D559V3, multiclass
        clus
vv       USP8 MUTATED USP8 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            2             60
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP8 MUTATED        0      3      2      0
  USP8 WILD-TYPE     98     41     48     57
D559V4, multiclass
        clus
vv       USP8 MUTATED USP8 WILD-TYPE
  CLUS_1            0             98
  CLUS_2            3             41
  CLUS_3            2             48
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP8 MUTATED        3      0      1      3      0
  USP8 WILD-TYPE     59     59     39     34     59
D559V5, multiclass
        clus
vv       USP8 MUTATED USP8 WILD-TYPE
  CLUS_1            3             59
  CLUS_2            0             59
  CLUS_3            1             39
  CLUS_4            3             34
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP8 MUTATED        0      0      7
  USP8 WILD-TYPE    106     54     90
D559V6, multiclass
        clus
vv       USP8 MUTATED USP8 WILD-TYPE
  CLUS_1            0            106
  CLUS_2            0             54
  CLUS_3            7             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP8 MUTATED        7      0      0
  USP8 WILD-TYPE    116     95     71
D559V7, multiclass
        clus
vv       USP8 MUTATED USP8 WILD-TYPE
  CLUS_1            7            116
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP8 MUTATED        7      0      0
  USP8 WILD-TYPE    150     63     69
D559V8, multiclass
        clus
vv       USP8 MUTATED USP8 WILD-TYPE
  CLUS_1            7            150
  CLUS_2            0             63
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  USP8 MUTATED        0      1      1      2      0      0
  USP8 WILD-TYPE     33     18     58     37     16     45
D559V9, multiclass
        clus
vv       USP8 MUTATED USP8 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             18
  CLUS_3            1             58
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  USP8 MUTATED        2      0      1      0      1      0
  USP8 WILD-TYPE     45     39     34     32     22     35
D559V10, multiclass
        clus
vv       USP8 MUTATED USP8 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            0             32
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(560) Variable = GPR114 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR114 MUTATED        0      7      1      1      0
  GPR114 WILD-TYPE     79    119     26     42     12
D560V1, multiclass
        clus
vv       GPR114 MUTATED GPR114 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              7              119
  CLUS_3              1               26
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR114 MUTATED        0      6      2      1
  GPR114 WILD-TYPE     71     70     32     62
D560V2, multiclass
        clus
vv       GPR114 MUTATED GPR114 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              6               70
  CLUS_3              2               32
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR114 MUTATED        0      3      3      0      2
  GPR114 WILD-TYPE     16     59     48     65     53
D560V3, multiclass
        clus
vv       GPR114 MUTATED GPR114 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              3               59
  CLUS_3              3               48
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR114 MUTATED        3      3      2      0
  GPR114 WILD-TYPE     95     41     48     57
D560V4, multiclass
        clus
vv       GPR114 MUTATED GPR114 WILD-TYPE
  CLUS_1              3               95
  CLUS_2              3               41
  CLUS_3              2               48
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR114 MUTATED        5      1      0      2      1
  GPR114 WILD-TYPE     57     58     40     35     58
D560V5, multiclass
        clus
vv       GPR114 MUTATED GPR114 WILD-TYPE
  CLUS_1              5               57
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              2               35
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR114 MUTATED        1      0      8
  GPR114 WILD-TYPE    105     54     89
D560V6, multiclass
        clus
vv       GPR114 MUTATED GPR114 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               54
  CLUS_3              8               89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR114 MUTATED        6      2      1
  GPR114 WILD-TYPE    117     93     70
D560V7, multiclass
        clus
vv       GPR114 MUTATED GPR114 WILD-TYPE
  CLUS_1              6              117
  CLUS_2              2               93
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR114 MUTATED        7      1      1
  GPR114 WILD-TYPE    150     62     68
D560V8, multiclass
        clus
vv       GPR114 MUTATED GPR114 WILD-TYPE
  CLUS_1              7              150
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR114 MUTATED        2      1      2      2      1      0
  GPR114 WILD-TYPE     31     18     57     37     15     45
D560V9, multiclass
        clus
vv       GPR114 MUTATED GPR114 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              2               37
  CLUS_5              1               15
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR114 MUTATED        4      0      1      1      1      1
  GPR114 WILD-TYPE     43     39     34     31     22     34
D560V10, multiclass
        clus
vv       GPR114 MUTATED GPR114 WILD-TYPE
  CLUS_1              4               43
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(561) Variable = PTPRJ MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPRJ MUTATED        0     15      5      2      2
  PTPRJ WILD-TYPE     79    111     22     41     10
D561V1, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             0              79
  CLUS_2            15             111
  CLUS_3             5              22
  CLUS_4             2              41
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRJ MUTATED        1     11      4      3
  PTPRJ WILD-TYPE     70     65     30     60
D561V2, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             1              70
  CLUS_2            11              65
  CLUS_3             4              30
  CLUS_4             3              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPRJ MUTATED        2      9      6      1      4
  PTPRJ WILD-TYPE     14     53     45     64     51
D561V3, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             2              14
  CLUS_2             9              53
  CLUS_3             6              45
  CLUS_4             1              64
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRJ MUTATED        6      9      6      1
  PTPRJ WILD-TYPE     92     35     44     56
D561V4, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             6              92
  CLUS_2             9              35
  CLUS_3             6              44
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPRJ MUTATED       12      0      2      7      0
  PTPRJ WILD-TYPE     50     59     38     30     59
D561V5, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1            12              50
  CLUS_2             0              59
  CLUS_3             2              38
  CLUS_4             7              30
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRJ MUTATED        7      1     13
  PTPRJ WILD-TYPE     99     53     84
D561V6, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             7              99
  CLUS_2             1              53
  CLUS_3            13              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRJ MUTATED       22      2      0
  PTPRJ WILD-TYPE    101     93     71
D561V7, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1            22             101
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRJ MUTATED       21      2      1
  PTPRJ WILD-TYPE    136     61     68
D561V8, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1            21             136
  CLUS_2             2              61
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTPRJ MUTATED        0      3      9      4      0      1
  PTPRJ WILD-TYPE     33     16     50     35     16     44
D561V9, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             0              33
  CLUS_2             3              16
  CLUS_3             9              50
  CLUS_4             4              35
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTPRJ MUTATED        5      1      6      2      3      0
  PTPRJ WILD-TYPE     42     38     29     30     20     35
D561V10, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             5              42
  CLUS_2             1              38
  CLUS_3             6              29
  CLUS_4             2              30
  CLUS_5             3              20
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(562) Variable = BRD3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRD3 MUTATED        0     13      1      2      0
  BRD3 WILD-TYPE     79    113     26     41     12
D562V1, multiclass
        clus
vv       BRD3 MUTATED BRD3 WILD-TYPE
  CLUS_1            0             79
  CLUS_2           13            113
  CLUS_3            1             26
  CLUS_4            2             41
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD3 MUTATED        0      8      3      2
  BRD3 WILD-TYPE     71     68     31     61
D562V2, multiclass
        clus
vv       BRD3 MUTATED BRD3 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            8             68
  CLUS_3            3             31
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRD3 MUTATED        1      5      2      0      5
  BRD3 WILD-TYPE     15     57     49     65     50
D562V3, multiclass
        clus
vv       BRD3 MUTATED BRD3 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            5             57
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            5             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD3 MUTATED        4      7      2      0
  BRD3 WILD-TYPE     94     37     48     57
D562V4, multiclass
        clus
vv       BRD3 MUTATED BRD3 WILD-TYPE
  CLUS_1            4             94
  CLUS_2            7             37
  CLUS_3            2             48
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRD3 MUTATED       11      0      3      2      0
  BRD3 WILD-TYPE     51     59     37     35     59
D562V5, multiclass
        clus
vv       BRD3 MUTATED BRD3 WILD-TYPE
  CLUS_1           11             51
  CLUS_2            0             59
  CLUS_3            3             37
  CLUS_4            2             35
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD3 MUTATED        3      0     13
  BRD3 WILD-TYPE    103     54     84
D562V6, multiclass
        clus
vv       BRD3 MUTATED BRD3 WILD-TYPE
  CLUS_1            3            103
  CLUS_2            0             54
  CLUS_3           13             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD3 MUTATED       15      1      0
  BRD3 WILD-TYPE    108     94     71
D562V7, multiclass
        clus
vv       BRD3 MUTATED BRD3 WILD-TYPE
  CLUS_1           15            108
  CLUS_2            1             94
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD3 MUTATED       14      0      2
  BRD3 WILD-TYPE    143     63     67
D562V8, multiclass
        clus
vv       BRD3 MUTATED BRD3 WILD-TYPE
  CLUS_1           14            143
  CLUS_2            0             63
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BRD3 MUTATED        1      3      2      5      0      0
  BRD3 WILD-TYPE     32     16     57     34     16     45
D562V9, multiclass
        clus
vv       BRD3 MUTATED BRD3 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            3             16
  CLUS_3            2             57
  CLUS_4            5             34
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BRD3 MUTATED        4      0      2      2      2      1
  BRD3 WILD-TYPE     43     39     33     30     21     34
D562V10, multiclass
        clus
vv       BRD3 MUTATED BRD3 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            0             39
  CLUS_3            2             33
  CLUS_4            2             30
  CLUS_5            2             21
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(563) Variable = SLFN12 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLFN12 MUTATED        1      6      0      0      0
  SLFN12 WILD-TYPE     78    120     27     43     12
D563V1, multiclass
        clus
vv       SLFN12 MUTATED SLFN12 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              6              120
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN12 MUTATED        1      4      1      1
  SLFN12 WILD-TYPE     70     72     33     62
D563V2, multiclass
        clus
vv       SLFN12 MUTATED SLFN12 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              4               72
  CLUS_3              1               33
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLFN12 MUTATED        2      2      1      0      1
  SLFN12 WILD-TYPE     14     60     50     65     54
D563V3, multiclass
        clus
vv       SLFN12 MUTATED SLFN12 WILD-TYPE
  CLUS_1              2               14
  CLUS_2              2               60
  CLUS_3              1               50
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN12 MUTATED        3      3      0      0
  SLFN12 WILD-TYPE     95     41     50     57
D563V4, multiclass
        clus
vv       SLFN12 MUTATED SLFN12 WILD-TYPE
  CLUS_1              3               95
  CLUS_2              3               41
  CLUS_3              0               50
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLFN12 MUTATED        4      1      0      0      0
  SLFN12 WILD-TYPE     58     58     40     37     59
D563V5, multiclass
        clus
vv       SLFN12 MUTATED SLFN12 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              0               37
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLFN12 MUTATED        2      1      2
  SLFN12 WILD-TYPE    104     53     95
D563V6, multiclass
        clus
vv       SLFN12 MUTATED SLFN12 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              1               53
  CLUS_3              2               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLFN12 MUTATED        5      1      1
  SLFN12 WILD-TYPE    118     94     70
D563V7, multiclass
        clus
vv       SLFN12 MUTATED SLFN12 WILD-TYPE
  CLUS_1              5              118
  CLUS_2              1               94
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLFN12 MUTATED        6      1      0
  SLFN12 WILD-TYPE    151     62     69
D563V8, multiclass
        clus
vv       SLFN12 MUTATED SLFN12 WILD-TYPE
  CLUS_1              6              151
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLFN12 MUTATED        2      0      2      2      0      1
  SLFN12 WILD-TYPE     31     19     57     37     16     44
D563V9, multiclass
        clus
vv       SLFN12 MUTATED SLFN12 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               19
  CLUS_3              2               57
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLFN12 MUTATED        4      1      2      0      0      0
  SLFN12 WILD-TYPE     43     38     33     32     23     35
D563V10, multiclass
        clus
vv       SLFN12 MUTATED SLFN12 WILD-TYPE
  CLUS_1              4               43
  CLUS_2              1               38
  CLUS_3              2               33
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(564) Variable = FANCE MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FANCE MUTATED        0      6      0      0      0
  FANCE WILD-TYPE     79    120     27     43     12
D564V1, multiclass
        clus
vv       FANCE MUTATED FANCE WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANCE MUTATED        0      3      1      1
  FANCE WILD-TYPE     71     73     33     62
D564V2, multiclass
        clus
vv       FANCE MUTATED FANCE WILD-TYPE
  CLUS_1             0              71
  CLUS_2             3              73
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FANCE MUTATED        0      4      0      0      1
  FANCE WILD-TYPE     16     58     51     65     54
D564V3, multiclass
        clus
vv       FANCE MUTATED FANCE WILD-TYPE
  CLUS_1             0              16
  CLUS_2             4              58
  CLUS_3             0              51
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANCE MUTATED        0      2      3      0
  FANCE WILD-TYPE     98     42     47     57
D564V4, multiclass
        clus
vv       FANCE MUTATED FANCE WILD-TYPE
  CLUS_1             0              98
  CLUS_2             2              42
  CLUS_3             3              47
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FANCE MUTATED        4      0      0      1      0
  FANCE WILD-TYPE     58     59     40     36     59
D564V5, multiclass
        clus
vv       FANCE MUTATED FANCE WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FANCE MUTATED        1      0      4
  FANCE WILD-TYPE    105     54     93
D564V6, multiclass
        clus
vv       FANCE MUTATED FANCE WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FANCE MUTATED        7      0      0
  FANCE WILD-TYPE    116     95     71
D564V7, multiclass
        clus
vv       FANCE MUTATED FANCE WILD-TYPE
  CLUS_1             7             116
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FANCE MUTATED        6      1      0
  FANCE WILD-TYPE    151     62     69
D564V8, multiclass
        clus
vv       FANCE MUTATED FANCE WILD-TYPE
  CLUS_1             6             151
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FANCE MUTATED        1      1      2      1      0      0
  FANCE WILD-TYPE     32     18     57     38     16     45
D564V9, multiclass
        clus
vv       FANCE MUTATED FANCE WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             2              57
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FANCE MUTATED        2      0      2      0      1      0
  FANCE WILD-TYPE     45     39     33     32     22     35
D564V10, multiclass
        clus
vv       FANCE MUTATED FANCE WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(565) Variable = DUSP9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DUSP9 MUTATED        2      3      0      0      0
  DUSP9 WILD-TYPE     77    123     27     43     12
D565V1, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             2              77
  CLUS_2             3             123
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP9 MUTATED        2      0      1      0
  DUSP9 WILD-TYPE     69     76     33     63
D565V2, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             0              76
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DUSP9 MUTATED        0      2      0      0      2
  DUSP9 WILD-TYPE     16     60     51     65     53
D565V3, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             0              51
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP9 MUTATED        0      3      1      0
  DUSP9 WILD-TYPE     98     41     49     57
D565V4, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             3              41
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DUSP9 MUTATED        1      0      0      2      2
  DUSP9 WILD-TYPE     61     59     40     35     57
D565V5, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             2              35
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DUSP9 MUTATED        1      0      4
  DUSP9 WILD-TYPE    105     54     93
D565V6, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DUSP9 MUTATED        3      0      2
  DUSP9 WILD-TYPE    120     95     69
D565V7, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             3             120
  CLUS_2             0              95
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DUSP9 MUTATED        3      0      2
  DUSP9 WILD-TYPE    154     63     67
D565V8, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             3             154
  CLUS_2             0              63
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DUSP9 MUTATED        2      0      0      0      0      0
  DUSP9 WILD-TYPE     31     19     59     39     16     45
D565V9, multiclass
[1] "Remove cluster labels:" "DUSP9 MUTATED"         
clus
  DUSP9 MUTATED DUSP9 WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-IP-7968 
"DUSP9 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DUSP9 MUTATED        1      0      0      0      0      1
  DUSP9 WILD-TYPE     46     39     35     32     23     34
D565V10, multiclass
[1] "Remove cluster labels:" "DUSP9 MUTATED"         
clus
  DUSP9 MUTATED DUSP9 WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" "DUSP9 WILD-TYPE" 
     TCGA-IP-7968 
"DUSP9 WILD-TYPE" 

Clustering(566) Variable = AKAP11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKAP11 MUTATED        2     10      0      1      1
  AKAP11 WILD-TYPE     77    116     27     42     11
D566V1, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              2               77
  CLUS_2             10              116
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP11 MUTATED        3      7      0      1
  AKAP11 WILD-TYPE     68     69     34     62
D566V2, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              7               69
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKAP11 MUTATED        1      5      6      0      1
  AKAP11 WILD-TYPE     15     57     45     65     54
D566V3, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              5               57
  CLUS_3              6               45
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP11 MUTATED        4      6      3      0
  AKAP11 WILD-TYPE     94     38     47     57
D566V4, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              4               94
  CLUS_2              6               38
  CLUS_3              3               47
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKAP11 MUTATED        5      0      1      5      2
  AKAP11 WILD-TYPE     57     59     39     32     57
D566V5, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              5               57
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              5               32
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKAP11 MUTATED        2      1     10
  AKAP11 WILD-TYPE    104     53     87
D566V6, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              1               53
  CLUS_3             10               87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKAP11 MUTATED       10      1      3
  AKAP11 WILD-TYPE    113     94     68
D566V7, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1             10              113
  CLUS_2              1               94
  CLUS_3              3               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKAP11 MUTATED       12      0      2
  AKAP11 WILD-TYPE    145     63     67
D566V8, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1             12              145
  CLUS_2              0               63
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AKAP11 MUTATED        4      2      2      1      0      0
  AKAP11 WILD-TYPE     29     17     57     38     16     45
D566V9, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              4               29
  CLUS_2              2               17
  CLUS_3              2               57
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AKAP11 MUTATED        5      0      2      0      1      1
  AKAP11 WILD-TYPE     42     39     33     32     22     34
D566V10, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              5               42
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              0               32
  CLUS_5              1               22
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(567) Variable = EXOSC8 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOSC8 MUTATED        0      4      0      1      0
  EXOSC8 WILD-TYPE     79    122     27     42     12
D567V1, multiclass
        clus
vv       EXOSC8 MUTATED EXOSC8 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              4              122
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOSC8 MUTATED        0      2      1      0
  EXOSC8 WILD-TYPE     71     74     33     63
D567V2, multiclass
        clus
vv       EXOSC8 MUTATED EXOSC8 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              2               74
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOSC8 MUTATED        0      2      1      0      1
  EXOSC8 WILD-TYPE     16     60     50     65     54
D567V3, multiclass
        clus
vv       EXOSC8 MUTATED EXOSC8 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              2               60
  CLUS_3              1               50
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOSC8 MUTATED        0      2      2      0
  EXOSC8 WILD-TYPE     98     42     48     57
D567V4, multiclass
        clus
vv       EXOSC8 MUTATED EXOSC8 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              2               42
  CLUS_3              2               48
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOSC8 MUTATED        4      0      0      1      0
  EXOSC8 WILD-TYPE     58     59     40     36     59
D567V5, multiclass
        clus
vv       EXOSC8 MUTATED EXOSC8 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EXOSC8 MUTATED        1      0      4
  EXOSC8 WILD-TYPE    105     54     93
D567V6, multiclass
        clus
vv       EXOSC8 MUTATED EXOSC8 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               54
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EXOSC8 MUTATED        5      0      0
  EXOSC8 WILD-TYPE    118     95     71
D567V7, multiclass
        clus
vv       EXOSC8 MUTATED EXOSC8 WILD-TYPE
  CLUS_1              5              118
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EXOSC8 MUTATED        5      0      0
  EXOSC8 WILD-TYPE    152     63     69
D567V8, multiclass
        clus
vv       EXOSC8 MUTATED EXOSC8 WILD-TYPE
  CLUS_1              5              152
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EXOSC8 MUTATED        0      1      0      2      0      0
  EXOSC8 WILD-TYPE     33     18     59     37     16     45
D567V9, multiclass
        clus
vv       EXOSC8 MUTATED EXOSC8 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               18
  CLUS_3              0               59
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EXOSC8 MUTATED        1      0      0      0      2      0
  EXOSC8 WILD-TYPE     46     39     35     32     21     35
D567V10, multiclass
        clus
vv       EXOSC8 MUTATED EXOSC8 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               39
  CLUS_3              0               35
  CLUS_4              0               32
  CLUS_5              2               21
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(568) Variable = PNMT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PNMT MUTATED        1      6      0      1      0
  PNMT WILD-TYPE     78    120     27     42     12
D568V1, multiclass
        clus
vv       PNMT MUTATED PNMT WILD-TYPE
  CLUS_1            1             78
  CLUS_2            6            120
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNMT MUTATED        1      2      1      2
  PNMT WILD-TYPE     70     74     33     61
D568V2, multiclass
        clus
vv       PNMT MUTATED PNMT WILD-TYPE
  CLUS_1            1             70
  CLUS_2            2             74
  CLUS_3            1             33
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PNMT MUTATED        1      1      1      2      3
  PNMT WILD-TYPE     15     61     50     63     52
D568V3, multiclass
        clus
vv       PNMT MUTATED PNMT WILD-TYPE
  CLUS_1            1             15
  CLUS_2            1             61
  CLUS_3            1             50
  CLUS_4            2             63
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNMT MUTATED        4      2      1      1
  PNMT WILD-TYPE     94     42     49     56
D568V4, multiclass
        clus
vv       PNMT MUTATED PNMT WILD-TYPE
  CLUS_1            4             94
  CLUS_2            2             42
  CLUS_3            1             49
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PNMT MUTATED        3      1      2      1      1
  PNMT WILD-TYPE     59     58     38     36     58
D568V5, multiclass
        clus
vv       PNMT MUTATED PNMT WILD-TYPE
  CLUS_1            3             59
  CLUS_2            1             58
  CLUS_3            2             38
  CLUS_4            1             36
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PNMT MUTATED        2      1      5
  PNMT WILD-TYPE    104     53     92
D568V6, multiclass
        clus
vv       PNMT MUTATED PNMT WILD-TYPE
  CLUS_1            2            104
  CLUS_2            1             53
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PNMT MUTATED        6      1      1
  PNMT WILD-TYPE    117     94     70
D568V7, multiclass
        clus
vv       PNMT MUTATED PNMT WILD-TYPE
  CLUS_1            6            117
  CLUS_2            1             94
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PNMT MUTATED        6      1      1
  PNMT WILD-TYPE    151     62     68
D568V8, multiclass
        clus
vv       PNMT MUTATED PNMT WILD-TYPE
  CLUS_1            6            151
  CLUS_2            1             62
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PNMT MUTATED        0      0      1      1      1      1
  PNMT WILD-TYPE     33     19     58     38     15     44
D568V9, multiclass
        clus
vv       PNMT MUTATED PNMT WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             19
  CLUS_3            1             58
  CLUS_4            1             38
  CLUS_5            1             15
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PNMT MUTATED        0      1      1      2      0      0
  PNMT WILD-TYPE     47     38     34     30     23     35
D568V10, multiclass
        clus
vv       PNMT MUTATED PNMT WILD-TYPE
  CLUS_1            0             47
  CLUS_2            1             38
  CLUS_3            1             34
  CLUS_4            2             30
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(569) Variable = MAP2K1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP2K1 MUTATED        0      4      1      0      0
  MAP2K1 WILD-TYPE     79    122     26     43     12
D569V1, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              4              122
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2K1 MUTATED        1      2      1      1
  MAP2K1 WILD-TYPE     70     74     33     62
D569V2, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              2               74
  CLUS_3              1               33
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP2K1 MUTATED        0      1      2      0      2
  MAP2K1 WILD-TYPE     16     61     49     65     53
D569V3, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              1               61
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2K1 MUTATED        1      2      1      1
  MAP2K1 WILD-TYPE     97     42     49     56
D569V4, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              2               42
  CLUS_3              1               49
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP2K1 MUTATED        3      0      0      2      0
  MAP2K1 WILD-TYPE     59     59     40     35     59
D569V5, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              2               35
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K1 MUTATED        2      1      2
  MAP2K1 WILD-TYPE    104     53     95
D569V6, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              1               53
  CLUS_3              2               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K1 MUTATED        4      1      0
  MAP2K1 WILD-TYPE    119     94     71
D569V7, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              4              119
  CLUS_2              1               94
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K1 MUTATED        3      2      0
  MAP2K1 WILD-TYPE    154     61     69
D569V8, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              3              154
  CLUS_2              2               61
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAP2K1 MUTATED        1      0      3      0      0      1
  MAP2K1 WILD-TYPE     32     19     56     39     16     44
D569V9, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               19
  CLUS_3              3               56
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAP2K1 MUTATED        1      0      3      0      1      0
  MAP2K1 WILD-TYPE     46     39     32     32     22     35
D569V10, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              0               32
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(570) Variable = ZNF292 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF292 MUTATED        1     18      1      0      0
  ZNF292 WILD-TYPE     78    108     26     43     12
D570V1, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              1               78
  CLUS_2             18              108
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF292 MUTATED        1     11      3      2
  ZNF292 WILD-TYPE     70     65     31     61
D570V2, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              1               70
  CLUS_2             11               65
  CLUS_3              3               31
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF292 MUTATED        0      7      5      1      6
  ZNF292 WILD-TYPE     16     55     46     64     49
D570V3, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              7               55
  CLUS_3              5               46
  CLUS_4              1               64
  CLUS_5              6               49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF292 MUTATED        3     12      3      1
  ZNF292 WILD-TYPE     95     32     47     56
D570V4, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              3               95
  CLUS_2             12               32
  CLUS_3              3               47
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF292 MUTATED       14      2      1      2      0
  ZNF292 WILD-TYPE     48     57     39     35     59
D570V5, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1             14               48
  CLUS_2              2               57
  CLUS_3              1               39
  CLUS_4              2               35
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF292 MUTATED        2      2     15
  ZNF292 WILD-TYPE    104     52     82
D570V6, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              2               52
  CLUS_3             15               82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF292 MUTATED       17      3      1
  ZNF292 WILD-TYPE    106     92     70
D570V7, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1             17              106
  CLUS_2              3               92
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF292 MUTATED       19      2      0
  ZNF292 WILD-TYPE    138     61     69
D570V8, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1             19              138
  CLUS_2              2               61
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF292 MUTATED        2      2      4      6      0      1
  ZNF292 WILD-TYPE     31     17     55     33     16     44
D570V9, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              2               17
  CLUS_3              4               55
  CLUS_4              6               33
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF292 MUTATED        5      1      4      2      3      0
  ZNF292 WILD-TYPE     42     38     31     30     20     35
D570V10, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              5               42
  CLUS_2              1               38
  CLUS_3              4               31
  CLUS_4              2               30
  CLUS_5              3               20
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(571) Variable = SCN9A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCN9A MUTATED        6     12      3      4      2
  SCN9A WILD-TYPE     73    114     24     39     10
D571V1, multiclass
        clus
vv       SCN9A MUTATED SCN9A WILD-TYPE
  CLUS_1             6              73
  CLUS_2            12             114
  CLUS_3             3              24
  CLUS_4             4              39
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN9A MUTATED        7     14      1      2
  SCN9A WILD-TYPE     64     62     33     61
D571V2, multiclass
        clus
vv       SCN9A MUTATED SCN9A WILD-TYPE
  CLUS_1             7              64
  CLUS_2            14              62
  CLUS_3             1              33
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCN9A MUTATED        3      7      5      2      6
  SCN9A WILD-TYPE     13     55     46     63     49
D571V3, multiclass
        clus
vv       SCN9A MUTATED SCN9A WILD-TYPE
  CLUS_1             3              13
  CLUS_2             7              55
  CLUS_3             5              46
  CLUS_4             2              63
  CLUS_5             6              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN9A MUTATED        8      9      4      2
  SCN9A WILD-TYPE     90     35     46     55
D571V4, multiclass
        clus
vv       SCN9A MUTATED SCN9A WILD-TYPE
  CLUS_1             8              90
  CLUS_2             9              35
  CLUS_3             4              46
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCN9A MUTATED       13      1      4      2      4
  SCN9A WILD-TYPE     49     58     36     35     55
D571V5, multiclass
        clus
vv       SCN9A MUTATED SCN9A WILD-TYPE
  CLUS_1            13              49
  CLUS_2             1              58
  CLUS_3             4              36
  CLUS_4             2              35
  CLUS_5             4              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN9A MUTATED        6      2     16
  SCN9A WILD-TYPE    100     52     81
D571V6, multiclass
        clus
vv       SCN9A MUTATED SCN9A WILD-TYPE
  CLUS_1             6             100
  CLUS_2             2              52
  CLUS_3            16              81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN9A MUTATED       17      5      6
  SCN9A WILD-TYPE    106     90     65
D571V7, multiclass
        clus
vv       SCN9A MUTATED SCN9A WILD-TYPE
  CLUS_1            17             106
  CLUS_2             5              90
  CLUS_3             6              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCN9A MUTATED       19      2      7
  SCN9A WILD-TYPE    138     61     62
D571V8, multiclass
        clus
vv       SCN9A MUTATED SCN9A WILD-TYPE
  CLUS_1            19             138
  CLUS_2             2              61
  CLUS_3             7              62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SCN9A MUTATED        5      1      8      6      1      1
  SCN9A WILD-TYPE     28     18     51     33     15     44
D571V9, multiclass
        clus
vv       SCN9A MUTATED SCN9A WILD-TYPE
  CLUS_1             5              28
  CLUS_2             1              18
  CLUS_3             8              51
  CLUS_4             6              33
  CLUS_5             1              15
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SCN9A MUTATED        9      1      4      3      2      3
  SCN9A WILD-TYPE     38     38     31     29     21     32
D571V10, multiclass
        clus
vv       SCN9A MUTATED SCN9A WILD-TYPE
  CLUS_1             9              38
  CLUS_2             1              38
  CLUS_3             4              31
  CLUS_4             3              29
  CLUS_5             2              21
  CLUS_6             3              32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(572) Variable = KANK4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KANK4 MUTATED        0      8      1      1      0
  KANK4 WILD-TYPE     79    118     26     42     12
D572V1, multiclass
        clus
vv       KANK4 MUTATED KANK4 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             8             118
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KANK4 MUTATED        2      6      0      0
  KANK4 WILD-TYPE     69     70     34     63
D572V2, multiclass
        clus
vv       KANK4 MUTATED KANK4 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             6              70
  CLUS_3             0              34
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KANK4 MUTATED        1      2      3      0      2
  KANK4 WILD-TYPE     15     60     48     65     53
D572V3, multiclass
        clus
vv       KANK4 MUTATED KANK4 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              60
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KANK4 MUTATED        2      5      1      0
  KANK4 WILD-TYPE     96     39     49     57
D572V4, multiclass
        clus
vv       KANK4 MUTATED KANK4 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             5              39
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KANK4 MUTATED        5      0      2      1      1
  KANK4 WILD-TYPE     57     59     38     36     58
D572V5, multiclass
        clus
vv       KANK4 MUTATED KANK4 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             0              59
  CLUS_3             2              38
  CLUS_4             1              36
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KANK4 MUTATED        0      0      9
  KANK4 WILD-TYPE    106     54     88
D572V6, multiclass
        clus
vv       KANK4 MUTATED KANK4 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              54
  CLUS_3             9              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KANK4 MUTATED        8      1      1
  KANK4 WILD-TYPE    115     94     70
D572V7, multiclass
        clus
vv       KANK4 MUTATED KANK4 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KANK4 MUTATED        9      0      1
  KANK4 WILD-TYPE    148     63     68
D572V8, multiclass
        clus
vv       KANK4 MUTATED KANK4 WILD-TYPE
  CLUS_1             9             148
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KANK4 MUTATED        1      1      2      3      0      1
  KANK4 WILD-TYPE     32     18     57     36     16     44
D572V9, multiclass
        clus
vv       KANK4 MUTATED KANK4 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             2              57
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KANK4 MUTATED        3      0      2      1      1      1
  KANK4 WILD-TYPE     44     39     33     31     22     34
D572V10, multiclass
        clus
vv       KANK4 MUTATED KANK4 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(573) Variable = DQX1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DQX1 MUTATED        1      7      0      1      0
  DQX1 WILD-TYPE     78    119     27     42     12
D573V1, multiclass
        clus
vv       DQX1 MUTATED DQX1 WILD-TYPE
  CLUS_1            1             78
  CLUS_2            7            119
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DQX1 MUTATED        1      5      1      1
  DQX1 WILD-TYPE     70     71     33     62
D573V2, multiclass
        clus
vv       DQX1 MUTATED DQX1 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            5             71
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DQX1 MUTATED        0      4      1      1      1
  DQX1 WILD-TYPE     16     58     50     64     54
D573V3, multiclass
        clus
vv       DQX1 MUTATED DQX1 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            4             58
  CLUS_3            1             50
  CLUS_4            1             64
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DQX1 MUTATED        0      4      2      1
  DQX1 WILD-TYPE     98     40     48     56
D573V4, multiclass
        clus
vv       DQX1 MUTATED DQX1 WILD-TYPE
  CLUS_1            0             98
  CLUS_2            4             40
  CLUS_3            2             48
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DQX1 MUTATED        4      1      0      3      1
  DQX1 WILD-TYPE     58     58     40     34     58
D573V5, multiclass
        clus
vv       DQX1 MUTATED DQX1 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            1             58
  CLUS_3            0             40
  CLUS_4            3             34
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DQX1 MUTATED        1      0      8
  DQX1 WILD-TYPE    105     54     89
D573V6, multiclass
        clus
vv       DQX1 MUTATED DQX1 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            8             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DQX1 MUTATED        6      1      2
  DQX1 WILD-TYPE    117     94     69
D573V7, multiclass
        clus
vv       DQX1 MUTATED DQX1 WILD-TYPE
  CLUS_1            6            117
  CLUS_2            1             94
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DQX1 MUTATED        7      0      2
  DQX1 WILD-TYPE    150     63     67
D573V8, multiclass
        clus
vv       DQX1 MUTATED DQX1 WILD-TYPE
  CLUS_1            7            150
  CLUS_2            0             63
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DQX1 MUTATED        2      2      1      1      1      0
  DQX1 WILD-TYPE     31     17     58     38     15     45
D573V9, multiclass
        clus
vv       DQX1 MUTATED DQX1 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            2             17
  CLUS_3            1             58
  CLUS_4            1             38
  CLUS_5            1             15
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DQX1 MUTATED        4      0      1      1      0      1
  DQX1 WILD-TYPE     43     39     34     31     23     34
D573V10, multiclass
        clus
vv       DQX1 MUTATED DQX1 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            1             31
  CLUS_5            0             23
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(574) Variable = CYP7B1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP7B1 MUTATED        5      9      1      1      0
  CYP7B1 WILD-TYPE     74    117     26     42     12
D574V1, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              5               74
  CLUS_2              9              117
  CLUS_3              1               26
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP7B1 MUTATED        3      4      1      5
  CYP7B1 WILD-TYPE     68     72     33     58
D574V2, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              4               72
  CLUS_3              1               33
  CLUS_4              5               58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP7B1 MUTATED        1      7      2      4      1
  CYP7B1 WILD-TYPE     15     55     49     61     54
D574V3, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              7               55
  CLUS_3              2               49
  CLUS_4              4               61
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP7B1 MUTATED        4      2      7      2
  CYP7B1 WILD-TYPE     94     42     43     55
D574V4, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              4               94
  CLUS_2              2               42
  CLUS_3              7               43
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP7B1 MUTATED        4      3      0      2      5
  CYP7B1 WILD-TYPE     58     56     40     35     54
D574V5, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              3               56
  CLUS_3              0               40
  CLUS_4              2               35
  CLUS_5              5               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP7B1 MUTATED       10      0      4
  CYP7B1 WILD-TYPE     96     54     93
D574V6, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1             10               96
  CLUS_2              0               54
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP7B1 MUTATED        6      8      2
  CYP7B1 WILD-TYPE    117     87     69
D574V7, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              6              117
  CLUS_2              8               87
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP7B1 MUTATED        5      6      5
  CYP7B1 WILD-TYPE    152     57     64
D574V8, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              5              152
  CLUS_2              6               57
  CLUS_3              5               64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CYP7B1 MUTATED        2      1      4      2      1      3
  CYP7B1 WILD-TYPE     31     18     55     37     15     42
D574V9, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               18
  CLUS_3              4               55
  CLUS_4              2               37
  CLUS_5              1               15
  CLUS_6              3               42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CYP7B1 MUTATED        0      0      4      1      4      4
  CYP7B1 WILD-TYPE     47     39     31     31     19     31
D574V10, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              0               47
  CLUS_2              0               39
  CLUS_3              4               31
  CLUS_4              1               31
  CLUS_5              4               19
  CLUS_6              4               31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(575) Variable = C3 MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C3 MUTATED        2     18      3      2      0
  C3 WILD-TYPE     77    108     24     41     12
D575V1, multiclass
        clus
vv       C3 MUTATED C3 WILD-TYPE
  CLUS_1          2           77
  CLUS_2         18          108
  CLUS_3          3           24
  CLUS_4          2           41
  CLUS_5          0           12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C3 MUTATED        5     10      6      2
  C3 WILD-TYPE     66     66     28     61
D575V2, multiclass
        clus
vv       C3 MUTATED C3 WILD-TYPE
  CLUS_1          5           66
  CLUS_2         10           66
  CLUS_3          6           28
  CLUS_4          2           61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C3 MUTATED        3      9      4      2      6
  C3 WILD-TYPE     13     53     47     63     49
D575V3, multiclass
        clus
vv       C3 MUTATED C3 WILD-TYPE
  CLUS_1          3           13
  CLUS_2          9           53
  CLUS_3          4           47
  CLUS_4          2           63
  CLUS_5          6           49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C3 MUTATED        5      9      5      5
  C3 WILD-TYPE     93     35     45     52
D575V4, multiclass
        clus
vv       C3 MUTATED C3 WILD-TYPE
  CLUS_1          5           93
  CLUS_2          9           35
  CLUS_3          5           45
  CLUS_4          5           52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C3 MUTATED       10      3      1      3      2
  C3 WILD-TYPE     52     56     39     34     57
D575V5, multiclass
        clus
vv       C3 MUTATED C3 WILD-TYPE
  CLUS_1         10           52
  CLUS_2          3           56
  CLUS_3          1           39
  CLUS_4          3           34
  CLUS_5          2           57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  C3 MUTATED        7      2     10
  C3 WILD-TYPE     99     52     87
D575V6, multiclass
        clus
vv       C3 MUTATED C3 WILD-TYPE
  CLUS_1          7           99
  CLUS_2          2           52
  CLUS_3         10           87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  C3 MUTATED       15      8      2
  C3 WILD-TYPE    108     87     69
D575V7, multiclass
        clus
vv       C3 MUTATED C3 WILD-TYPE
  CLUS_1         15          108
  CLUS_2          8           87
  CLUS_3          2           69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  C3 MUTATED       17      5      3
  C3 WILD-TYPE    140     58     66
D575V8, multiclass
        clus
vv       C3 MUTATED C3 WILD-TYPE
  CLUS_1         17          140
  CLUS_2          5           58
  CLUS_3          3           66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C3 MUTATED        1      2     12      2      0      5
  C3 WILD-TYPE     32     17     47     37     16     40
D575V9, multiclass
        clus
vv       C3 MUTATED C3 WILD-TYPE
  CLUS_1          1           32
  CLUS_2          2           17
  CLUS_3         12           47
  CLUS_4          2           37
  CLUS_5          0           16
  CLUS_6          5           40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C3 MUTATED        7      2      6      1      5      1
  C3 WILD-TYPE     40     37     29     31     18     34
D575V10, multiclass
        clus
vv       C3 MUTATED C3 WILD-TYPE
  CLUS_1          7           40
  CLUS_2          2           37
  CLUS_3          6           29
  CLUS_4          1           31
  CLUS_5          5           18
  CLUS_6          1           34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(576) Variable = ATRIP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATRIP MUTATED        0      4      0      1      0
  ATRIP WILD-TYPE     79    122     27     42     12
D576V1, multiclass
        clus
vv       ATRIP MUTATED ATRIP WILD-TYPE
  CLUS_1             0              79
  CLUS_2             4             122
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRIP MUTATED        0      4      0      0
  ATRIP WILD-TYPE     71     72     34     63
D576V2, multiclass
        clus
vv       ATRIP MUTATED ATRIP WILD-TYPE
  CLUS_1             0              71
  CLUS_2             4              72
  CLUS_3             0              34
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATRIP MUTATED        0      2      1      0      2
  ATRIP WILD-TYPE     16     60     50     65     53
D576V3, multiclass
        clus
vv       ATRIP MUTATED ATRIP WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATRIP MUTATED        0      5      0      0
  ATRIP WILD-TYPE     98     39     50     57
D576V4, multiclass
        clus
vv       ATRIP MUTATED ATRIP WILD-TYPE
  CLUS_1             0              98
  CLUS_2             5              39
  CLUS_3             0              50
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATRIP MUTATED        3      0      0      2      0
  ATRIP WILD-TYPE     59     59     40     35     59
D576V5, multiclass
        clus
vv       ATRIP MUTATED ATRIP WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATRIP MUTATED        0      0      5
  ATRIP WILD-TYPE    106     54     92
D576V6, multiclass
        clus
vv       ATRIP MUTATED ATRIP WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              54
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATRIP MUTATED        4      0      1
  ATRIP WILD-TYPE    119     95     70
D576V7, multiclass
        clus
vv       ATRIP MUTATED ATRIP WILD-TYPE
  CLUS_1             4             119
  CLUS_2             0              95
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATRIP MUTATED        5      0      0
  ATRIP WILD-TYPE    152     63     69
D576V8, multiclass
        clus
vv       ATRIP MUTATED ATRIP WILD-TYPE
  CLUS_1             5             152
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATRIP MUTATED        1      0      0      3      0      0
  ATRIP WILD-TYPE     32     19     59     36     16     45
D576V9, multiclass
        clus
vv       ATRIP MUTATED ATRIP WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             0              59
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATRIP MUTATED        3      0      0      0      1      0
  ATRIP WILD-TYPE     44     39     35     32     22     35
D576V10, multiclass
        clus
vv       ATRIP MUTATED ATRIP WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             0              35
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(577) Variable = CDC5L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC5L MUTATED        1     11      1      1      0
  CDC5L WILD-TYPE     78    115     26     42     12
D577V1, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             1              78
  CLUS_2            11             115
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC5L MUTATED        1      8      0      1
  CDC5L WILD-TYPE     70     68     34     62
D577V2, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             1              70
  CLUS_2             8              68
  CLUS_3             0              34
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC5L MUTATED        0      4      3      1      3
  CDC5L WILD-TYPE     16     58     48     64     52
D577V3, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             0              16
  CLUS_2             4              58
  CLUS_3             3              48
  CLUS_4             1              64
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC5L MUTATED        2      6      2      1
  CDC5L WILD-TYPE     96     38     48     56
D577V4, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             2              96
  CLUS_2             6              38
  CLUS_3             2              48
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC5L MUTATED        7      2      0      3      2
  CDC5L WILD-TYPE     55     57     40     34     57
D577V5, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             7              55
  CLUS_2             2              57
  CLUS_3             0              40
  CLUS_4             3              34
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC5L MUTATED        3      3      8
  CDC5L WILD-TYPE    103     51     89
D577V6, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             3             103
  CLUS_2             3              51
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC5L MUTATED       11      3      1
  CDC5L WILD-TYPE    112     92     70
D577V7, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1            11             112
  CLUS_2             3              92
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC5L MUTATED       12      2      1
  CDC5L WILD-TYPE    145     61     68
D577V8, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1            12             145
  CLUS_2             2              61
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDC5L MUTATED        2      1      2      4      0      1
  CDC5L WILD-TYPE     31     18     57     35     16     44
D577V9, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              18
  CLUS_3             2              57
  CLUS_4             4              35
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDC5L MUTATED        3      1      2      3      1      0
  CDC5L WILD-TYPE     44     38     33     29     22     35
D577V10, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             3              44
  CLUS_2             1              38
  CLUS_3             2              33
  CLUS_4             3              29
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(578) Variable = SMAD2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD2 MUTATED        1      6      1      0      1
  SMAD2 WILD-TYPE     78    120     26     43     11
D578V1, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             6             120
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD2 MUTATED        0      5      1      0
  SMAD2 WILD-TYPE     71     71     33     63
D578V2, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             5              71
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD2 MUTATED        1      3      2      0      1
  SMAD2 WILD-TYPE     15     59     49     65     54
D578V3, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3              59
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD2 MUTATED        2      2      3      0
  SMAD2 WILD-TYPE     96     42     47     57
D578V4, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             2              42
  CLUS_3             3              47
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD2 MUTATED        3      0      1      4      0
  SMAD2 WILD-TYPE     59     59     39     33     59
D578V5, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             4              33
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD2 MUTATED        0      2      6
  SMAD2 WILD-TYPE    106     52     91
D578V6, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             2              52
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD2 MUTATED        7      1      1
  SMAD2 WILD-TYPE    116     94     70
D578V7, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             7             116
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD2 MUTATED        9      0      0
  SMAD2 WILD-TYPE    148     63     69
D578V8, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             9             148
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMAD2 MUTATED        1      1      1      2      0      0
  SMAD2 WILD-TYPE     32     18     58     37     16     45
D578V9, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             1              58
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMAD2 MUTATED        3      0      1      0      1      0
  SMAD2 WILD-TYPE     44     39     34     32     22     35
D578V10, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(579) Variable = IDE MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDE MUTATED        1      5      3      0      0
  IDE WILD-TYPE     78    121     24     43     12
D579V1, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           1            78
  CLUS_2           5           121
  CLUS_3           3            24
  CLUS_4           0            43
  CLUS_5           0            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDE MUTATED        1      4      1      1
  IDE WILD-TYPE     70     72     33     62
D579V2, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           1            70
  CLUS_2           4            72
  CLUS_3           1            33
  CLUS_4           1            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDE MUTATED        1      1      2      0      4
  IDE WILD-TYPE     15     61     49     65     51
D579V3, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           1            15
  CLUS_2           1            61
  CLUS_3           2            49
  CLUS_4           0            65
  CLUS_5           4            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDE MUTATED        3      5      0      0
  IDE WILD-TYPE     95     39     50     57
D579V4, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           3            95
  CLUS_2           5            39
  CLUS_3           0            50
  CLUS_4           0            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDE MUTATED        1      0      1      4      1
  IDE WILD-TYPE     61     59     39     33     58
D579V5, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           1            61
  CLUS_2           0            59
  CLUS_3           1            39
  CLUS_4           4            33
  CLUS_5           1            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IDE MUTATED        0      0      7
  IDE WILD-TYPE    106     54     90
D579V6, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           0           106
  CLUS_2           0            54
  CLUS_3           7            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IDE MUTATED        7      1      1
  IDE WILD-TYPE    116     94     70
D579V7, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           7           116
  CLUS_2           1            94
  CLUS_3           1            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IDE MUTATED        7      1      1
  IDE WILD-TYPE    150     62     68
D579V8, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           7           150
  CLUS_2           1            62
  CLUS_3           1            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IDE MUTATED        3      1      1      0      0      1
  IDE WILD-TYPE     30     18     58     39     16     44
D579V9, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           3            30
  CLUS_2           1            18
  CLUS_3           1            58
  CLUS_4           0            39
  CLUS_5           0            16
  CLUS_6           1            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IDE MUTATED        3      1      1      1      0      0
  IDE WILD-TYPE     44     38     34     31     23     35
D579V10, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           3            44
  CLUS_2           1            38
  CLUS_3           1            34
  CLUS_4           1            31
  CLUS_5           0            23
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(580) Variable = PCBP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCBP2 MUTATED        0      3      0      0      1
  PCBP2 WILD-TYPE     79    123     27     43     11
D580V1, multiclass
        clus
vv       PCBP2 MUTATED PCBP2 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             3             123
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCBP2 MUTATED        0      4      0      0
  PCBP2 WILD-TYPE     71     72     34     63
D580V2, multiclass
        clus
vv       PCBP2 MUTATED PCBP2 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             4              72
  CLUS_3             0              34
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCBP2 MUTATED        0      0      1      0      1
  PCBP2 WILD-TYPE     16     62     50     65     54
D580V3, multiclass
[1] "Remove cluster labels:" "PCBP2 MUTATED"         
clus
  PCBP2 MUTATED PCBP2 WILD-TYPE 
              2             247 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6710 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7715 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8080 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8369 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8380 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-BR-A4QL 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300      TCGA-CG-4301 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4442      TCGA-CG-4443 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4465 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4474      TCGA-CG-4475 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5723 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7916 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-FP-7998      TCGA-HF-7133      TCGA-HF-7136      TCGA-HJ-7597 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-HU-8602      TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4GF 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCBP2 MUTATED        2      0      0      0
  PCBP2 WILD-TYPE     96     44     50     57
D580V4, multiclass
[1] "Remove cluster labels:" "PCBP2 MUTATED"         
clus
  PCBP2 MUTATED PCBP2 WILD-TYPE 
              2             247 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6710 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7715 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8080 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8369 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8380 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-BR-A4QL 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300      TCGA-CG-4301 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4442      TCGA-CG-4443 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4465 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4474      TCGA-CG-4475 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5723 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7916 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-FP-7998      TCGA-HF-7133      TCGA-HF-7136      TCGA-HJ-7597 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-HU-8602      TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4GF 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
     TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" "PCBP2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCBP2 MUTATED        2      0      2      0      0
  PCBP2 WILD-TYPE     60     59     38     37     59
D580V5, multiclass
        clus
vv       PCBP2 MUTATED PCBP2 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              59
  CLUS_3             2              38
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCBP2 MUTATED        0      0      4
  PCBP2 WILD-TYPE    106     54     93
D580V6, multiclass
        clus
vv       PCBP2 MUTATED PCBP2 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              54
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCBP2 MUTATED        4      0      0
  PCBP2 WILD-TYPE    119     95     71
D580V7, multiclass
        clus
vv       PCBP2 MUTATED PCBP2 WILD-TYPE
  CLUS_1             4             119
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCBP2 MUTATED        4      0      0
  PCBP2 WILD-TYPE    153     63     69
D580V8, multiclass
        clus
vv       PCBP2 MUTATED PCBP2 WILD-TYPE
  CLUS_1             4             153
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PCBP2 MUTATED        1      0      0      2      0      0
  PCBP2 WILD-TYPE     32     19     59     37     16     45
D580V9, multiclass
        clus
vv       PCBP2 MUTATED PCBP2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             0              59
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PCBP2 MUTATED        2      0      0      1      0      0
  PCBP2 WILD-TYPE     45     39     35     31     23     35
D580V10, multiclass
        clus
vv       PCBP2 MUTATED PCBP2 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             0              35
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(581) Variable = CBLN3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBLN3 MUTATED        0      3      2      0      0
  CBLN3 WILD-TYPE     79    123     25     43     12
D581V1, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             3             123
  CLUS_3             2              25
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLN3 MUTATED        1      3      0      0
  CBLN3 WILD-TYPE     70     73     34     63
D581V2, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             3              73
  CLUS_3             0              34
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBLN3 MUTATED        1      1      1      0      1
  CBLN3 WILD-TYPE     15     61     50     65     54
D581V3, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             1              61
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLN3 MUTATED        2      2      0      0
  CBLN3 WILD-TYPE     96     42     50     57
D581V4, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             2              42
  CLUS_3             0              50
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBLN3 MUTATED        2      0      2      0      0
  CBLN3 WILD-TYPE     60     59     38     37     59
D581V5, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              59
  CLUS_3             2              38
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBLN3 MUTATED        0      0      4
  CBLN3 WILD-TYPE    106     54     93
D581V6, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              54
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBLN3 MUTATED        4      0      1
  CBLN3 WILD-TYPE    119     95     70
D581V7, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             4             119
  CLUS_2             0              95
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBLN3 MUTATED        5      0      0
  CBLN3 WILD-TYPE    152     63     69
D581V8, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             5             152
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CBLN3 MUTATED        2      0      1      1      0      0
  CBLN3 WILD-TYPE     31     19     58     38     16     45
D581V9, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              19
  CLUS_3             1              58
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CBLN3 MUTATED        2      0      1      0      1      0
  CBLN3 WILD-TYPE     45     39     34     32     22     35
D581V10, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(582) Variable = AP3M2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AP3M2 MUTATED        1      6      0      1      2
  AP3M2 WILD-TYPE     78    120     27     42     10
D582V1, multiclass
        clus
vv       AP3M2 MUTATED AP3M2 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP3M2 MUTATED        1      4      1      1
  AP3M2 WILD-TYPE     70     72     33     62
D582V2, multiclass
        clus
vv       AP3M2 MUTATED AP3M2 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             4              72
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AP3M2 MUTATED        0      3      2      2      2
  AP3M2 WILD-TYPE     16     59     49     63     53
D582V3, multiclass
        clus
vv       AP3M2 MUTATED AP3M2 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              59
  CLUS_3             2              49
  CLUS_4             2              63
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP3M2 MUTATED        2      5      2      0
  AP3M2 WILD-TYPE     96     39     48     57
D582V4, multiclass
        clus
vv       AP3M2 MUTATED AP3M2 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             5              39
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AP3M2 MUTATED        4      1      4      1      0
  AP3M2 WILD-TYPE     58     58     36     36     59
D582V5, multiclass
        clus
vv       AP3M2 MUTATED AP3M2 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             1              58
  CLUS_3             4              36
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP3M2 MUTATED        3      1      6
  AP3M2 WILD-TYPE    103     53     91
D582V6, multiclass
        clus
vv       AP3M2 MUTATED AP3M2 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             1              53
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP3M2 MUTATED        8      2      0
  AP3M2 WILD-TYPE    115     93     71
D582V7, multiclass
        clus
vv       AP3M2 MUTATED AP3M2 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP3M2 MUTATED        8      2      0
  AP3M2 WILD-TYPE    149     61     69
D582V8, multiclass
        clus
vv       AP3M2 MUTATED AP3M2 WILD-TYPE
  CLUS_1             8             149
  CLUS_2             2              61
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AP3M2 MUTATED        1      1      2      1      0      0
  AP3M2 WILD-TYPE     32     18     57     38     16     45
D582V9, multiclass
        clus
vv       AP3M2 MUTATED AP3M2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             2              57
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AP3M2 MUTATED        2      0      2      1      0      0
  AP3M2 WILD-TYPE     45     39     33     31     23     35
D582V10, multiclass
        clus
vv       AP3M2 MUTATED AP3M2 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(583) Variable = HOOK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOOK1 MUTATED        0      6      0      0      0
  HOOK1 WILD-TYPE     79    120     27     43     12
D583V1, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOOK1 MUTATED        0      3      1      1
  HOOK1 WILD-TYPE     71     73     33     62
D583V2, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             3              73
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOOK1 MUTATED        0      1      1      1      2
  HOOK1 WILD-TYPE     16     61     50     64     53
D583V3, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              61
  CLUS_3             1              50
  CLUS_4             1              64
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOOK1 MUTATED        0      3      1      1
  HOOK1 WILD-TYPE     98     41     49     56
D583V4, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             3              41
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOOK1 MUTATED        4      0      0      1      0
  HOOK1 WILD-TYPE     58     59     40     36     59
D583V5, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOOK1 MUTATED        1      0      4
  HOOK1 WILD-TYPE    105     54     93
D583V6, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOOK1 MUTATED        5      1      0
  HOOK1 WILD-TYPE    118     94     71
D583V7, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             5             118
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOOK1 MUTATED        6      0      0
  HOOK1 WILD-TYPE    151     63     69
D583V8, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HOOK1 MUTATED        1      0      2      1      0      0
  HOOK1 WILD-TYPE     32     19     57     38     16     45
D583V9, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             2              57
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HOOK1 MUTATED        2      0      2      0      0      0
  HOOK1 WILD-TYPE     45     39     33     32     23     35
D583V10, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(584) Variable = DUSP11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DUSP11 MUTATED        0      4      0      0      0
  DUSP11 WILD-TYPE     79    122     27     43     12
D584V1, multiclass
        clus
vv       DUSP11 MUTATED DUSP11 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              4              122
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP11 MUTATED        0      3      0      0
  DUSP11 WILD-TYPE     71     73     34     63
D584V2, multiclass
        clus
vv       DUSP11 MUTATED DUSP11 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              3               73
  CLUS_3              0               34
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DUSP11 MUTATED        0      2      1      0      0
  DUSP11 WILD-TYPE     16     60     50     65     55
D584V3, multiclass
        clus
vv       DUSP11 MUTATED DUSP11 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              2               60
  CLUS_3              1               50
  CLUS_4              0               65
  CLUS_5              0               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP11 MUTATED        0      2      1      0
  DUSP11 WILD-TYPE     98     42     49     57
D584V4, multiclass
        clus
vv       DUSP11 MUTATED DUSP11 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              2               42
  CLUS_3              1               49
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DUSP11 MUTATED        2      0      0      1      0
  DUSP11 WILD-TYPE     60     59     40     36     59
D584V5, multiclass
        clus
vv       DUSP11 MUTATED DUSP11 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DUSP11 MUTATED        0      0      3
  DUSP11 WILD-TYPE    106     54     94
D584V6, multiclass
        clus
vv       DUSP11 MUTATED DUSP11 WILD-TYPE
  CLUS_1              0              106
  CLUS_2              0               54
  CLUS_3              3               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DUSP11 MUTATED        4      0      0
  DUSP11 WILD-TYPE    119     95     71
D584V7, multiclass
        clus
vv       DUSP11 MUTATED DUSP11 WILD-TYPE
  CLUS_1              4              119
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DUSP11 MUTATED        4      0      0
  DUSP11 WILD-TYPE    153     63     69
D584V8, multiclass
        clus
vv       DUSP11 MUTATED DUSP11 WILD-TYPE
  CLUS_1              4              153
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DUSP11 MUTATED        0      1      2      0      0      0
  DUSP11 WILD-TYPE     33     18     57     39     16     45
D584V9, multiclass
        clus
vv       DUSP11 MUTATED DUSP11 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DUSP11 MUTATED        2      0      1      0      0      0
  DUSP11 WILD-TYPE     45     39     34     32     23     35
D584V10, multiclass
        clus
vv       DUSP11 MUTATED DUSP11 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(585) Variable = CNKSR1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNKSR1 MUTATED        0      6      0      1      0
  CNKSR1 WILD-TYPE     79    120     27     42     12
D585V1, multiclass
        clus
vv       CNKSR1 MUTATED CNKSR1 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              6              120
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNKSR1 MUTATED        0      5      1      0
  CNKSR1 WILD-TYPE     71     71     33     63
D585V2, multiclass
        clus
vv       CNKSR1 MUTATED CNKSR1 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              5               71
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNKSR1 MUTATED        0      1      3      0      2
  CNKSR1 WILD-TYPE     16     61     48     65     53
D585V3, multiclass
        clus
vv       CNKSR1 MUTATED CNKSR1 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              1               61
  CLUS_3              3               48
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNKSR1 MUTATED        1      4      1      0
  CNKSR1 WILD-TYPE     97     40     49     57
D585V4, multiclass
        clus
vv       CNKSR1 MUTATED CNKSR1 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              4               40
  CLUS_3              1               49
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNKSR1 MUTATED        4      0      1      2      0
  CNKSR1 WILD-TYPE     58     59     39     35     59
D585V5, multiclass
        clus
vv       CNKSR1 MUTATED CNKSR1 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              2               35
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CNKSR1 MUTATED        0      0      7
  CNKSR1 WILD-TYPE    106     54     90
D585V6, multiclass
        clus
vv       CNKSR1 MUTATED CNKSR1 WILD-TYPE
  CLUS_1              0              106
  CLUS_2              0               54
  CLUS_3              7               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CNKSR1 MUTATED        7      0      0
  CNKSR1 WILD-TYPE    116     95     71
D585V7, multiclass
        clus
vv       CNKSR1 MUTATED CNKSR1 WILD-TYPE
  CLUS_1              7              116
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CNKSR1 MUTATED        7      0      0
  CNKSR1 WILD-TYPE    150     63     69
D585V8, multiclass
        clus
vv       CNKSR1 MUTATED CNKSR1 WILD-TYPE
  CLUS_1              7              150
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNKSR1 MUTATED        0      0      1      3      0      0
  CNKSR1 WILD-TYPE     33     19     58     36     16     45
D585V9, multiclass
        clus
vv       CNKSR1 MUTATED CNKSR1 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               19
  CLUS_3              1               58
  CLUS_4              3               36
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNKSR1 MUTATED        1      0      0      2      1      0
  CNKSR1 WILD-TYPE     46     39     35     30     22     35
D585V10, multiclass
        clus
vv       CNKSR1 MUTATED CNKSR1 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               39
  CLUS_3              0               35
  CLUS_4              2               30
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(586) Variable = PPARGC1B MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPARGC1B MUTATED        0      6      0      1      0
  PPARGC1B WILD-TYPE     79    120     27     42     12
D586V1, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                0                 79
  CLUS_2                6                120
  CLUS_3                0                 27
  CLUS_4                1                 42
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPARGC1B MUTATED        0      6      0      0
  PPARGC1B WILD-TYPE     71     70     34     63
D586V2, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                0                 71
  CLUS_2                6                 70
  CLUS_3                0                 34
  CLUS_4                0                 63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPARGC1B MUTATED        0      4      0      0      1
  PPARGC1B WILD-TYPE     16     58     51     65     54
D586V3, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                4                 58
  CLUS_3                0                 51
  CLUS_4                0                 65
  CLUS_5                1                 54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPARGC1B MUTATED        0      2      3      0
  PPARGC1B WILD-TYPE     98     42     47     57
D586V4, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                0                 98
  CLUS_2                2                 42
  CLUS_3                3                 47
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPARGC1B MUTATED        5      1      0      1      0
  PPARGC1B WILD-TYPE     57     58     40     36     59
D586V5, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                5                 57
  CLUS_2                1                 58
  CLUS_3                0                 40
  CLUS_4                1                 36
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPARGC1B MUTATED        1      1      5
  PPARGC1B WILD-TYPE    105     53     92
D586V6, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                1                105
  CLUS_2                1                 53
  CLUS_3                5                 92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPARGC1B MUTATED        4      2      1
  PPARGC1B WILD-TYPE    119     93     70
D586V7, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                4                119
  CLUS_2                2                 93
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPARGC1B MUTATED        7      0      0
  PPARGC1B WILD-TYPE    150     63     69
D586V8, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                7                150
  CLUS_2                0                 63
  CLUS_3                0                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPARGC1B MUTATED        0      1      0      5      0      0
  PPARGC1B WILD-TYPE     33     18     59     34     16     45
D586V9, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                1                 18
  CLUS_3                0                 59
  CLUS_4                5                 34
  CLUS_5                0                 16
  CLUS_6                0                 45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPARGC1B MUTATED        4      0      0      0      2      0
  PPARGC1B WILD-TYPE     43     39     35     32     21     35
D586V10, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                4                 43
  CLUS_2                0                 39
  CLUS_3                0                 35
  CLUS_4                0                 32
  CLUS_5                2                 21
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(587) Variable = SCAMP2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCAMP2 MUTATED        0      4      0      1      1
  SCAMP2 WILD-TYPE     79    122     27     42     11
D587V1, multiclass
        clus
vv       SCAMP2 MUTATED SCAMP2 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              4              122
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCAMP2 MUTATED        0      3      1      0
  SCAMP2 WILD-TYPE     71     73     33     63
D587V2, multiclass
        clus
vv       SCAMP2 MUTATED SCAMP2 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              3               73
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCAMP2 MUTATED        0      3      0      0      3
  SCAMP2 WILD-TYPE     16     59     51     65     52
D587V3, multiclass
        clus
vv       SCAMP2 MUTATED SCAMP2 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              3               59
  CLUS_3              0               51
  CLUS_4              0               65
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCAMP2 MUTATED        1      2      3      0
  SCAMP2 WILD-TYPE     97     42     47     57
D587V4, multiclass
        clus
vv       SCAMP2 MUTATED SCAMP2 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              2               42
  CLUS_3              3               47
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCAMP2 MUTATED        3      1      0      2      0
  SCAMP2 WILD-TYPE     59     58     40     35     59
D587V5, multiclass
        clus
vv       SCAMP2 MUTATED SCAMP2 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              2               35
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCAMP2 MUTATED        0      2      4
  SCAMP2 WILD-TYPE    106     52     93
D587V6, multiclass
        clus
vv       SCAMP2 MUTATED SCAMP2 WILD-TYPE
  CLUS_1              0              106
  CLUS_2              2               52
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCAMP2 MUTATED        4      2      0
  SCAMP2 WILD-TYPE    119     93     71
D587V7, multiclass
        clus
vv       SCAMP2 MUTATED SCAMP2 WILD-TYPE
  CLUS_1              4              119
  CLUS_2              2               93
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCAMP2 MUTATED        6      0      0
  SCAMP2 WILD-TYPE    151     63     69
D587V8, multiclass
        clus
vv       SCAMP2 MUTATED SCAMP2 WILD-TYPE
  CLUS_1              6              151
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SCAMP2 MUTATED        1      0      0      2      0      1
  SCAMP2 WILD-TYPE     32     19     59     37     16     44
D587V9, multiclass
        clus
vv       SCAMP2 MUTATED SCAMP2 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               19
  CLUS_3              0               59
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SCAMP2 MUTATED        1      0      0      1      2      0
  SCAMP2 WILD-TYPE     46     39     35     31     21     35
D587V10, multiclass
        clus
vv       SCAMP2 MUTATED SCAMP2 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               39
  CLUS_3              0               35
  CLUS_4              1               31
  CLUS_5              2               21
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(588) Variable = TMEM79 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM79 MUTATED        0      6      0      0      0
  TMEM79 WILD-TYPE     79    120     27     43     12
D588V1, multiclass
        clus
vv       TMEM79 MUTATED TMEM79 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              6              120
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM79 MUTATED        0      5      0      0
  TMEM79 WILD-TYPE     71     71     34     63
D588V2, multiclass
        clus
vv       TMEM79 MUTATED TMEM79 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              5               71
  CLUS_3              0               34
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM79 MUTATED        0      1      3      0      0
  TMEM79 WILD-TYPE     16     61     48     65     55
D588V3, multiclass
        clus
vv       TMEM79 MUTATED TMEM79 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              1               61
  CLUS_3              3               48
  CLUS_4              0               65
  CLUS_5              0               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM79 MUTATED        1      3      0      0
  TMEM79 WILD-TYPE     97     41     50     57
D588V4, multiclass
        clus
vv       TMEM79 MUTATED TMEM79 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              3               41
  CLUS_3              0               50
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM79 MUTATED        2      1      0      2      0
  TMEM79 WILD-TYPE     60     58     40     35     59
D588V5, multiclass
        clus
vv       TMEM79 MUTATED TMEM79 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              2               35
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM79 MUTATED        0      1      4
  TMEM79 WILD-TYPE    106     53     93
D588V6, multiclass
        clus
vv       TMEM79 MUTATED TMEM79 WILD-TYPE
  CLUS_1              0              106
  CLUS_2              1               53
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM79 MUTATED        5      1      0
  TMEM79 WILD-TYPE    118     94     71
D588V7, multiclass
        clus
vv       TMEM79 MUTATED TMEM79 WILD-TYPE
  CLUS_1              5              118
  CLUS_2              1               94
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM79 MUTATED        6      0      0
  TMEM79 WILD-TYPE    151     63     69
D588V8, multiclass
        clus
vv       TMEM79 MUTATED TMEM79 WILD-TYPE
  CLUS_1              6              151
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM79 MUTATED        0      2      2      0      0      0
  TMEM79 WILD-TYPE     33     17     57     39     16     45
D588V9, multiclass
        clus
vv       TMEM79 MUTATED TMEM79 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              2               17
  CLUS_3              2               57
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM79 MUTATED        3      0      0      0      1      0
  TMEM79 WILD-TYPE     44     39     35     32     22     35
D588V10, multiclass
        clus
vv       TMEM79 MUTATED TMEM79 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              0               35
  CLUS_4              0               32
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(589) Variable = CD1E MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD1E MUTATED        3      2      1      1      0
  CD1E WILD-TYPE     76    124     26     42     12
D589V1, multiclass
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  CLUS_1            3             76
  CLUS_2            2            124
  CLUS_3            1             26
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD1E MUTATED        1      2      0      2
  CD1E WILD-TYPE     70     74     34     61
D589V2, multiclass
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  CLUS_1            1             70
  CLUS_2            2             74
  CLUS_3            0             34
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD1E MUTATED        2      2      2      0      1
  CD1E WILD-TYPE     14     60     49     65     54
D589V3, multiclass
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  CLUS_1            2             14
  CLUS_2            2             60
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD1E MUTATED        3      2      1      1
  CD1E WILD-TYPE     95     42     49     56
D589V4, multiclass
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  CLUS_1            3             95
  CLUS_2            2             42
  CLUS_3            1             49
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD1E MUTATED        1      1      0      2      3
  CD1E WILD-TYPE     61     58     40     35     56
D589V5, multiclass
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  CLUS_1            1             61
  CLUS_2            1             58
  CLUS_3            0             40
  CLUS_4            2             35
  CLUS_5            3             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD1E MUTATED        3      2      2
  CD1E WILD-TYPE    103     52     95
D589V6, multiclass
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  CLUS_1            3            103
  CLUS_2            2             52
  CLUS_3            2             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD1E MUTATED        4      1      2
  CD1E WILD-TYPE    119     94     69
D589V7, multiclass
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  CLUS_1            4            119
  CLUS_2            1             94
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD1E MUTATED        3      1      3
  CD1E WILD-TYPE    154     62     66
D589V8, multiclass
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  CLUS_1            3            154
  CLUS_2            1             62
  CLUS_3            3             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CD1E MUTATED        2      1      0      0      0      1
  CD1E WILD-TYPE     31     18     59     39     16     44
D589V9, multiclass
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             18
  CLUS_3            0             59
  CLUS_4            0             39
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CD1E MUTATED        0      2      0      0      0      2
  CD1E WILD-TYPE     47     37     35     32     23     33
D589V10, multiclass
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  CLUS_1            0             47
  CLUS_2            2             37
  CLUS_3            0             35
  CLUS_4            0             32
  CLUS_5            0             23
  CLUS_6            2             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(590) Variable = EEF2K MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EEF2K MUTATED        2      4      0      1      1
  EEF2K WILD-TYPE     77    122     27     42     11
D590V1, multiclass
        clus
vv       EEF2K MUTATED EEF2K WILD-TYPE
  CLUS_1             2              77
  CLUS_2             4             122
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEF2K MUTATED        2      2      0      1
  EEF2K WILD-TYPE     69     74     34     62
D590V2, multiclass
        clus
vv       EEF2K MUTATED EEF2K WILD-TYPE
  CLUS_1             2              69
  CLUS_2             2              74
  CLUS_3             0              34
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EEF2K MUTATED        1      1      1      1      3
  EEF2K WILD-TYPE     15     61     50     64     52
D590V3, multiclass
        clus
vv       EEF2K MUTATED EEF2K WILD-TYPE
  CLUS_1             1              15
  CLUS_2             1              61
  CLUS_3             1              50
  CLUS_4             1              64
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEF2K MUTATED        3      3      0      1
  EEF2K WILD-TYPE     95     41     50     56
D590V4, multiclass
        clus
vv       EEF2K MUTATED EEF2K WILD-TYPE
  CLUS_1             3              95
  CLUS_2             3              41
  CLUS_3             0              50
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EEF2K MUTATED        4      1      0      1      2
  EEF2K WILD-TYPE     58     58     40     36     57
D590V5, multiclass
        clus
vv       EEF2K MUTATED EEF2K WILD-TYPE
  CLUS_1             4              58
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EEF2K MUTATED        4      0      4
  EEF2K WILD-TYPE    102     54     93
D590V6, multiclass
        clus
vv       EEF2K MUTATED EEF2K WILD-TYPE
  CLUS_1             4             102
  CLUS_2             0              54
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EEF2K MUTATED        6      1      2
  EEF2K WILD-TYPE    117     94     69
D590V7, multiclass
        clus
vv       EEF2K MUTATED EEF2K WILD-TYPE
  CLUS_1             6             117
  CLUS_2             1              94
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EEF2K MUTATED        7      1      1
  EEF2K WILD-TYPE    150     62     68
D590V8, multiclass
        clus
vv       EEF2K MUTATED EEF2K WILD-TYPE
  CLUS_1             7             150
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EEF2K MUTATED        2      0      1      2      0      0
  EEF2K WILD-TYPE     31     19     58     37     16     45
D590V9, multiclass
        clus
vv       EEF2K MUTATED EEF2K WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              19
  CLUS_3             1              58
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EEF2K MUTATED        2      0      1      1      0      1
  EEF2K WILD-TYPE     45     39     34     31     23     34
D590V10, multiclass
        clus
vv       EEF2K MUTATED EEF2K WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(591) Variable = MON2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MON2 MUTATED        0     13      1      0      0
  MON2 WILD-TYPE     79    113     26     43     12
D591V1, multiclass
        clus
vv       MON2 MUTATED MON2 WILD-TYPE
  CLUS_1            0             79
  CLUS_2           13            113
  CLUS_3            1             26
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MON2 MUTATED        0      5      3      1
  MON2 WILD-TYPE     71     71     31     62
D591V2, multiclass
        clus
vv       MON2 MUTATED MON2 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            5             71
  CLUS_3            3             31
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MON2 MUTATED        0      6      2      4      1
  MON2 WILD-TYPE     16     56     49     61     54
D591V3, multiclass
        clus
vv       MON2 MUTATED MON2 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            6             56
  CLUS_3            2             49
  CLUS_4            4             61
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MON2 MUTATED        0      7      3      3
  MON2 WILD-TYPE     98     37     47     54
D591V4, multiclass
        clus
vv       MON2 MUTATED MON2 WILD-TYPE
  CLUS_1            0             98
  CLUS_2            7             37
  CLUS_3            3             47
  CLUS_4            3             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MON2 MUTATED        7      3      1      1      0
  MON2 WILD-TYPE     55     56     39     36     59
D591V5, multiclass
        clus
vv       MON2 MUTATED MON2 WILD-TYPE
  CLUS_1            7             55
  CLUS_2            3             56
  CLUS_3            1             39
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MON2 MUTATED        3      2      7
  MON2 WILD-TYPE    103     52     90
D591V6, multiclass
        clus
vv       MON2 MUTATED MON2 WILD-TYPE
  CLUS_1            3            103
  CLUS_2            2             52
  CLUS_3            7             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MON2 MUTATED       10      4      0
  MON2 WILD-TYPE    113     91     71
D591V7, multiclass
        clus
vv       MON2 MUTATED MON2 WILD-TYPE
  CLUS_1           10            113
  CLUS_2            4             91
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MON2 MUTATED        9      5      0
  MON2 WILD-TYPE    148     58     69
D591V8, multiclass
        clus
vv       MON2 MUTATED MON2 WILD-TYPE
  CLUS_1            9            148
  CLUS_2            5             58
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MON2 MUTATED        2      1      4      0      0      2
  MON2 WILD-TYPE     31     18     55     39     16     43
D591V9, multiclass
        clus
vv       MON2 MUTATED MON2 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            1             18
  CLUS_3            4             55
  CLUS_4            0             39
  CLUS_5            0             16
  CLUS_6            2             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MON2 MUTATED        2      1      4      1      1      0
  MON2 WILD-TYPE     45     38     31     31     22     35
D591V10, multiclass
        clus
vv       MON2 MUTATED MON2 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            1             38
  CLUS_3            4             31
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(592) Variable = FAAH MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAAH MUTATED        0      4      0      0      0
  FAAH WILD-TYPE     79    122     27     43     12
D592V1, multiclass
        clus
vv       FAAH MUTATED FAAH WILD-TYPE
  CLUS_1            0             79
  CLUS_2            4            122
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAAH MUTATED        0      1      1      1
  FAAH WILD-TYPE     71     75     33     62
D592V2, multiclass
        clus
vv       FAAH MUTATED FAAH WILD-TYPE
  CLUS_1            0             71
  CLUS_2            1             75
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAAH MUTATED        0      1      0      2      1
  FAAH WILD-TYPE     16     61     51     63     54
D592V3, multiclass
        clus
vv       FAAH MUTATED FAAH WILD-TYPE
  CLUS_1            0             16
  CLUS_2            1             61
  CLUS_3            0             51
  CLUS_4            2             63
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAAH MUTATED        0      1      1      2
  FAAH WILD-TYPE     98     43     49     55
D592V4, multiclass
        clus
vv       FAAH MUTATED FAAH WILD-TYPE
  CLUS_1            0             98
  CLUS_2            1             43
  CLUS_3            1             49
  CLUS_4            2             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAAH MUTATED        1      2      0      0      0
  FAAH WILD-TYPE     61     57     40     37     59
D592V5, multiclass
        clus
vv       FAAH MUTATED FAAH WILD-TYPE
  CLUS_1            1             61
  CLUS_2            2             57
  CLUS_3            0             40
  CLUS_4            0             37
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAAH MUTATED        1      1      1
  FAAH WILD-TYPE    105     53     96
D592V6, multiclass
        clus
vv       FAAH MUTATED FAAH WILD-TYPE
  CLUS_1            1            105
  CLUS_2            1             53
  CLUS_3            1             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAAH MUTATED        2      2      0
  FAAH WILD-TYPE    121     93     71
D592V7, multiclass
        clus
vv       FAAH MUTATED FAAH WILD-TYPE
  CLUS_1            2            121
  CLUS_2            2             93
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAAH MUTATED        2      1      1
  FAAH WILD-TYPE    155     62     68
D592V8, multiclass
        clus
vv       FAAH MUTATED FAAH WILD-TYPE
  CLUS_1            2            155
  CLUS_2            1             62
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAAH MUTATED        1      0      0      0      1      0
  FAAH WILD-TYPE     32     19     59     39     15     45
D592V9, multiclass
[1] "Remove cluster labels:" "FAAH MUTATED"          
clus
  FAAH MUTATED FAAH WILD-TYPE 
             2            209 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6453 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-7707     TCGA-BR-7715     TCGA-BR-7717     TCGA-BR-7723 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-7959     TCGA-BR-8058     TCGA-BR-8077     TCGA-BR-8078 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8297 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-8360     TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373     TCGA-BR-8380 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-8677     TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-8682     TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-A44T     TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-A4CR     TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J6 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-CD-8532     TCGA-CD-8534     TCGA-CD-8535     TCGA-CD-8536 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489     TCGA-CD-A48C 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CG-4437 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5717     TCGA-CG-5718 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-D7-8572     TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YY     TCGA-D7-A4Z0     TCGA-EQ-5647 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829     TCGA-FP-7998 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-FP-8631     TCGA-FP-A4BE     TCGA-HF-7132     TCGA-HF-7136 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604     TCGA-HU-8608 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC     TCGA-HU-A4GD 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GN     TCGA-HU-A4GQ 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-HU-A4GT     TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H2 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6     TCGA-HU-A4H8 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-IP-7968 
"FAAH WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAAH MUTATED        1      0      0      0      0      1
  FAAH WILD-TYPE     46     39     35     32     23     34
D592V10, multiclass
[1] "Remove cluster labels:" "FAAH MUTATED"          
clus
  FAAH MUTATED FAAH WILD-TYPE 
             2            209 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6453 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-7707     TCGA-BR-7715     TCGA-BR-7717     TCGA-BR-7723 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-7959     TCGA-BR-8058     TCGA-BR-8077     TCGA-BR-8078 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8297 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-8360     TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373     TCGA-BR-8380 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-8677     TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-8682     TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-A44T     TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-A4CR     TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J6 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-CD-8532     TCGA-CD-8534     TCGA-CD-8535     TCGA-CD-8536 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489     TCGA-CD-A48C 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CG-4437 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5717     TCGA-CG-5718 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-D7-8572     TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YY     TCGA-D7-A4Z0     TCGA-EQ-5647 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829     TCGA-FP-7998 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-FP-8631     TCGA-FP-A4BE     TCGA-HF-7132     TCGA-HF-7136 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604     TCGA-HU-8608 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC     TCGA-HU-A4GD 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GN     TCGA-HU-A4GQ 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-HU-A4GT     TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H2 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6     TCGA-HU-A4H8 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" "FAAH WILD-TYPE" 
    TCGA-IP-7968 
"FAAH WILD-TYPE" 

Clustering(593) Variable = BTNL8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTNL8 MUTATED        1      4      0      1      0
  BTNL8 WILD-TYPE     78    122     27     42     12
D593V1, multiclass
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             4             122
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTNL8 MUTATED        2      1      0      2
  BTNL8 WILD-TYPE     69     75     34     61
D593V2, multiclass
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              75
  CLUS_3             0              34
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTNL8 MUTATED        1      2      2      0      0
  BTNL8 WILD-TYPE     15     60     49     65     55
D593V3, multiclass
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              60
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             0              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTNL8 MUTATED        3      1      1      0
  BTNL8 WILD-TYPE     95     43     49     57
D593V4, multiclass
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             1              43
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTNL8 MUTATED        4      0      0      0      2
  BTNL8 WILD-TYPE     58     59     40     37     57
D593V5, multiclass
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             0              37
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTNL8 MUTATED        3      0      3
  BTNL8 WILD-TYPE    103     54     94
D593V6, multiclass
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTNL8 MUTATED        4      0      2
  BTNL8 WILD-TYPE    119     95     69
D593V7, multiclass
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             4             119
  CLUS_2             0              95
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTNL8 MUTATED        3      1      2
  BTNL8 WILD-TYPE    154     62     67
D593V8, multiclass
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             3             154
  CLUS_2             1              62
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BTNL8 MUTATED        0      0      2      1      0      1
  BTNL8 WILD-TYPE     33     19     57     38     16     44
D593V9, multiclass
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              19
  CLUS_3             2              57
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BTNL8 MUTATED        1      0      2      0      0      1
  BTNL8 WILD-TYPE     46     39     33     32     23     34
D593V10, multiclass
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(594) Variable = MAP1A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP1A MUTATED        2     10      2      1      0
  MAP1A WILD-TYPE     77    116     25     42     12
D594V1, multiclass
        clus
vv       MAP1A MUTATED MAP1A WILD-TYPE
  CLUS_1             2              77
  CLUS_2            10             116
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP1A MUTATED        1      8      1      1
  MAP1A WILD-TYPE     70     68     33     62
D594V2, multiclass
        clus
vv       MAP1A MUTATED MAP1A WILD-TYPE
  CLUS_1             1              70
  CLUS_2             8              68
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP1A MUTATED        2      4      3      0      5
  MAP1A WILD-TYPE     14     58     48     65     50
D594V3, multiclass
        clus
vv       MAP1A MUTATED MAP1A WILD-TYPE
  CLUS_1             2              14
  CLUS_2             4              58
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP1A MUTATED        4      8      1      1
  MAP1A WILD-TYPE     94     36     49     56
D594V4, multiclass
        clus
vv       MAP1A MUTATED MAP1A WILD-TYPE
  CLUS_1             4              94
  CLUS_2             8              36
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP1A MUTATED        7      0      3      2      2
  MAP1A WILD-TYPE     55     59     37     35     57
D594V5, multiclass
        clus
vv       MAP1A MUTATED MAP1A WILD-TYPE
  CLUS_1             7              55
  CLUS_2             0              59
  CLUS_3             3              37
  CLUS_4             2              35
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAP1A MUTATED        4      0     10
  MAP1A WILD-TYPE    102     54     87
D594V6, multiclass
        clus
vv       MAP1A MUTATED MAP1A WILD-TYPE
  CLUS_1             4             102
  CLUS_2             0              54
  CLUS_3            10              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAP1A MUTATED       12      1      2
  MAP1A WILD-TYPE    111     94     69
D594V7, multiclass
        clus
vv       MAP1A MUTATED MAP1A WILD-TYPE
  CLUS_1            12             111
  CLUS_2             1              94
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAP1A MUTATED       12      0      3
  MAP1A WILD-TYPE    145     63     66
D594V8, multiclass
        clus
vv       MAP1A MUTATED MAP1A WILD-TYPE
  CLUS_1            12             145
  CLUS_2             0              63
  CLUS_3             3              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAP1A MUTATED        0      1      5      4      0      1
  MAP1A WILD-TYPE     33     18     54     35     16     44
D594V9, multiclass
        clus
vv       MAP1A MUTATED MAP1A WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              18
  CLUS_3             5              54
  CLUS_4             4              35
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAP1A MUTATED        4      0      5      0      1      1
  MAP1A WILD-TYPE     43     39     30     32     22     34
D594V10, multiclass
        clus
vv       MAP1A MUTATED MAP1A WILD-TYPE
  CLUS_1             4              43
  CLUS_2             0              39
  CLUS_3             5              30
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(595) Variable = KIAA1539 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1539 MUTATED        0      5      1      0      0
  KIAA1539 WILD-TYPE     79    121     26     43     12
D595V1, multiclass
        clus
vv       KIAA1539 MUTATED KIAA1539 WILD-TYPE
  CLUS_1                0                 79
  CLUS_2                5                121
  CLUS_3                1                 26
  CLUS_4                0                 43
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1539 MUTATED        0      5      1      0
  KIAA1539 WILD-TYPE     71     71     33     63
D595V2, multiclass
        clus
vv       KIAA1539 MUTATED KIAA1539 WILD-TYPE
  CLUS_1                0                 71
  CLUS_2                5                 71
  CLUS_3                1                 33
  CLUS_4                0                 63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1539 MUTATED        0      2      1      0      2
  KIAA1539 WILD-TYPE     16     60     50     65     53
D595V3, multiclass
        clus
vv       KIAA1539 MUTATED KIAA1539 WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                2                 60
  CLUS_3                1                 50
  CLUS_4                0                 65
  CLUS_5                2                 53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1539 MUTATED        0      3      2      0
  KIAA1539 WILD-TYPE     98     41     48     57
D595V4, multiclass
        clus
vv       KIAA1539 MUTATED KIAA1539 WILD-TYPE
  CLUS_1                0                 98
  CLUS_2                3                 41
  CLUS_3                2                 48
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1539 MUTATED        5      0      0      0      0
  KIAA1539 WILD-TYPE     57     59     40     37     59
D595V5, multiclass
        clus
vv       KIAA1539 MUTATED KIAA1539 WILD-TYPE
  CLUS_1                5                 57
  CLUS_2                0                 59
  CLUS_3                0                 40
  CLUS_4                0                 37
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1539 MUTATED        1      0      4
  KIAA1539 WILD-TYPE    105     54     93
D595V6, multiclass
        clus
vv       KIAA1539 MUTATED KIAA1539 WILD-TYPE
  CLUS_1                1                105
  CLUS_2                0                 54
  CLUS_3                4                 93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1539 MUTATED        4      1      1
  KIAA1539 WILD-TYPE    119     94     70
D595V7, multiclass
        clus
vv       KIAA1539 MUTATED KIAA1539 WILD-TYPE
  CLUS_1                4                119
  CLUS_2                1                 94
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1539 MUTATED        6      0      0
  KIAA1539 WILD-TYPE    151     63     69
D595V8, multiclass
        clus
vv       KIAA1539 MUTATED KIAA1539 WILD-TYPE
  CLUS_1                6                151
  CLUS_2                0                 63
  CLUS_3                0                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1539 MUTATED        1      0      2      3      0      0
  KIAA1539 WILD-TYPE     32     19     57     36     16     45
D595V9, multiclass
        clus
vv       KIAA1539 MUTATED KIAA1539 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                0                 19
  CLUS_3                2                 57
  CLUS_4                3                 36
  CLUS_5                0                 16
  CLUS_6                0                 45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1539 MUTATED        3      0      2      0      1      0
  KIAA1539 WILD-TYPE     44     39     33     32     22     35
D595V10, multiclass
        clus
vv       KIAA1539 MUTATED KIAA1539 WILD-TYPE
  CLUS_1                3                 44
  CLUS_2                0                 39
  CLUS_3                2                 33
  CLUS_4                0                 32
  CLUS_5                1                 22
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(596) Variable = CEACAM3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEACAM3 MUTATED        0      5      1      0      0
  CEACAM3 WILD-TYPE     79    121     26     43     12
D596V1, multiclass
        clus
vv       CEACAM3 MUTATED CEACAM3 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               5               121
  CLUS_3               1                26
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM3 MUTATED        0      4      1      1
  CEACAM3 WILD-TYPE     71     72     33     62
D596V2, multiclass
        clus
vv       CEACAM3 MUTATED CEACAM3 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               4                72
  CLUS_3               1                33
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEACAM3 MUTATED        1      2      1      0      2
  CEACAM3 WILD-TYPE     15     60     50     65     53
D596V3, multiclass
        clus
vv       CEACAM3 MUTATED CEACAM3 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               2                60
  CLUS_3               1                50
  CLUS_4               0                65
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM3 MUTATED        1      3      1      1
  CEACAM3 WILD-TYPE     97     41     49     56
D596V4, multiclass
        clus
vv       CEACAM3 MUTATED CEACAM3 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               3                41
  CLUS_3               1                49
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEACAM3 MUTATED        4      0      0      2      0
  CEACAM3 WILD-TYPE     58     59     40     35     59
D596V5, multiclass
        clus
vv       CEACAM3 MUTATED CEACAM3 WILD-TYPE
  CLUS_1               4                58
  CLUS_2               0                59
  CLUS_3               0                40
  CLUS_4               2                35
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM3 MUTATED        2      0      4
  CEACAM3 WILD-TYPE    104     54     93
D596V6, multiclass
        clus
vv       CEACAM3 MUTATED CEACAM3 WILD-TYPE
  CLUS_1               2               104
  CLUS_2               0                54
  CLUS_3               4                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM3 MUTATED        6      1      0
  CEACAM3 WILD-TYPE    117     94     71
D596V7, multiclass
        clus
vv       CEACAM3 MUTATED CEACAM3 WILD-TYPE
  CLUS_1               6               117
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM3 MUTATED        7      0      0
  CEACAM3 WILD-TYPE    150     63     69
D596V8, multiclass
        clus
vv       CEACAM3 MUTATED CEACAM3 WILD-TYPE
  CLUS_1               7               150
  CLUS_2               0                63
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CEACAM3 MUTATED        1      1      3      1      0      0
  CEACAM3 WILD-TYPE     32     18     56     38     16     45
D596V9, multiclass
        clus
vv       CEACAM3 MUTATED CEACAM3 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                18
  CLUS_3               3                56
  CLUS_4               1                38
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CEACAM3 MUTATED        3      0      1      0      2      0
  CEACAM3 WILD-TYPE     44     39     34     32     21     35
D596V10, multiclass
        clus
vv       CEACAM3 MUTATED CEACAM3 WILD-TYPE
  CLUS_1               3                44
  CLUS_2               0                39
  CLUS_3               1                34
  CLUS_4               0                32
  CLUS_5               2                21
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(597) Variable = NUPL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUPL2 MUTATED        1      5      1      0      0
  NUPL2 WILD-TYPE     78    121     26     43     12
D597V1, multiclass
        clus
vv       NUPL2 MUTATED NUPL2 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             5             121
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUPL2 MUTATED        1      2      2      0
  NUPL2 WILD-TYPE     70     74     32     63
D597V2, multiclass
        clus
vv       NUPL2 MUTATED NUPL2 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             2              74
  CLUS_3             2              32
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUPL2 MUTATED        0      2      0      0      4
  NUPL2 WILD-TYPE     16     60     51     65     51
D597V3, multiclass
        clus
vv       NUPL2 MUTATED NUPL2 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             0              51
  CLUS_4             0              65
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUPL2 MUTATED        1      3      1      1
  NUPL2 WILD-TYPE     97     41     49     56
D597V4, multiclass
        clus
vv       NUPL2 MUTATED NUPL2 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             3              41
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUPL2 MUTATED        3      0      1      2      0
  NUPL2 WILD-TYPE     59     59     39     35     59
D597V5, multiclass
        clus
vv       NUPL2 MUTATED NUPL2 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUPL2 MUTATED        2      0      4
  NUPL2 WILD-TYPE    104     54     93
D597V6, multiclass
        clus
vv       NUPL2 MUTATED NUPL2 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUPL2 MUTATED        6      1      0
  NUPL2 WILD-TYPE    117     94     71
D597V7, multiclass
        clus
vv       NUPL2 MUTATED NUPL2 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUPL2 MUTATED        7      0      0
  NUPL2 WILD-TYPE    150     63     69
D597V8, multiclass
        clus
vv       NUPL2 MUTATED NUPL2 WILD-TYPE
  CLUS_1             7             150
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NUPL2 MUTATED        0      2      2      1      0      0
  NUPL2 WILD-TYPE     33     17     57     38     16     45
D597V9, multiclass
        clus
vv       NUPL2 MUTATED NUPL2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              17
  CLUS_3             2              57
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NUPL2 MUTATED        1      0      0      1      3      0
  NUPL2 WILD-TYPE     46     39     35     31     20     35
D597V10, multiclass
        clus
vv       NUPL2 MUTATED NUPL2 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              39
  CLUS_3             0              35
  CLUS_4             1              31
  CLUS_5             3              20
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(598) Variable = WAPAL MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WAPAL MUTATED        0      8      3      1      1
  WAPAL WILD-TYPE     79    118     24     42     11
D598V1, multiclass
        clus
vv       WAPAL MUTATED WAPAL WILD-TYPE
  CLUS_1             0              79
  CLUS_2             8             118
  CLUS_3             3              24
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WAPAL MUTATED        0      6      2      3
  WAPAL WILD-TYPE     71     70     32     60
D598V2, multiclass
        clus
vv       WAPAL MUTATED WAPAL WILD-TYPE
  CLUS_1             0              71
  CLUS_2             6              70
  CLUS_3             2              32
  CLUS_4             3              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WAPAL MUTATED        2      4      2      1      3
  WAPAL WILD-TYPE     14     58     49     64     52
D598V3, multiclass
        clus
vv       WAPAL MUTATED WAPAL WILD-TYPE
  CLUS_1             2              14
  CLUS_2             4              58
  CLUS_3             2              49
  CLUS_4             1              64
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WAPAL MUTATED        4      4      3      1
  WAPAL WILD-TYPE     94     40     47     56
D598V4, multiclass
        clus
vv       WAPAL MUTATED WAPAL WILD-TYPE
  CLUS_1             4              94
  CLUS_2             4              40
  CLUS_3             3              47
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WAPAL MUTATED        8      2      2      1      0
  WAPAL WILD-TYPE     54     57     38     36     59
D598V5, multiclass
        clus
vv       WAPAL MUTATED WAPAL WILD-TYPE
  CLUS_1             8              54
  CLUS_2             2              57
  CLUS_3             2              38
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WAPAL MUTATED        3      2      8
  WAPAL WILD-TYPE    103     52     89
D598V6, multiclass
        clus
vv       WAPAL MUTATED WAPAL WILD-TYPE
  CLUS_1             3             103
  CLUS_2             2              52
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WAPAL MUTATED       11      2      0
  WAPAL WILD-TYPE    112     93     71
D598V7, multiclass
        clus
vv       WAPAL MUTATED WAPAL WILD-TYPE
  CLUS_1            11             112
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WAPAL MUTATED       11      2      0
  WAPAL WILD-TYPE    146     61     69
D598V8, multiclass
        clus
vv       WAPAL MUTATED WAPAL WILD-TYPE
  CLUS_1            11             146
  CLUS_2             2              61
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WAPAL MUTATED        0      1      5      2      0      2
  WAPAL WILD-TYPE     33     18     54     37     16     43
D598V9, multiclass
        clus
vv       WAPAL MUTATED WAPAL WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              18
  CLUS_3             5              54
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             2              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WAPAL MUTATED        3      1      6      0      0      0
  WAPAL WILD-TYPE     44     38     29     32     23     35
D598V10, multiclass
        clus
vv       WAPAL MUTATED WAPAL WILD-TYPE
  CLUS_1             3              44
  CLUS_2             1              38
  CLUS_3             6              29
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(599) Variable = BTRC MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTRC MUTATED        0      8      0      0      0
  BTRC WILD-TYPE     79    118     27     43     12
D599V1, multiclass
        clus
vv       BTRC MUTATED BTRC WILD-TYPE
  CLUS_1            0             79
  CLUS_2            8            118
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTRC MUTATED        1      3      1      1
  BTRC WILD-TYPE     70     73     33     62
D599V2, multiclass
        clus
vv       BTRC MUTATED BTRC WILD-TYPE
  CLUS_1            1             70
  CLUS_2            3             73
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTRC MUTATED        0      3      3      1      1
  BTRC WILD-TYPE     16     59     48     64     54
D599V3, multiclass
        clus
vv       BTRC MUTATED BTRC WILD-TYPE
  CLUS_1            0             16
  CLUS_2            3             59
  CLUS_3            3             48
  CLUS_4            1             64
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTRC MUTATED        0      6      0      2
  BTRC WILD-TYPE     98     38     50     55
D599V4, multiclass
        clus
vv       BTRC MUTATED BTRC WILD-TYPE
  CLUS_1            0             98
  CLUS_2            6             38
  CLUS_3            0             50
  CLUS_4            2             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTRC MUTATED        4      1      1      1      0
  BTRC WILD-TYPE     58     58     39     36     59
D599V5, multiclass
        clus
vv       BTRC MUTATED BTRC WILD-TYPE
  CLUS_1            4             58
  CLUS_2            1             58
  CLUS_3            1             39
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BTRC MUTATED        1      1      5
  BTRC WILD-TYPE    105     53     92
D599V6, multiclass
        clus
vv       BTRC MUTATED BTRC WILD-TYPE
  CLUS_1            1            105
  CLUS_2            1             53
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BTRC MUTATED        7      1      0
  BTRC WILD-TYPE    116     94     71
D599V7, multiclass
        clus
vv       BTRC MUTATED BTRC WILD-TYPE
  CLUS_1            7            116
  CLUS_2            1             94
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BTRC MUTATED        7      1      0
  BTRC WILD-TYPE    150     62     69
D599V8, multiclass
        clus
vv       BTRC MUTATED BTRC WILD-TYPE
  CLUS_1            7            150
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BTRC MUTATED        1      1      1      1      0      1
  BTRC WILD-TYPE     32     18     58     38     16     44
D599V9, multiclass
        clus
vv       BTRC MUTATED BTRC WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            1             58
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BTRC MUTATED        2      0      1      0      2      0
  BTRC WILD-TYPE     45     39     34     32     21     35
D599V10, multiclass
        clus
vv       BTRC MUTATED BTRC WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            0             32
  CLUS_5            2             21
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(600) Variable = GPC4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPC4 MUTATED        1      6      0      1      0
  GPC4 WILD-TYPE     78    120     27     42     12
D600V1, multiclass
        clus
vv       GPC4 MUTATED GPC4 WILD-TYPE
  CLUS_1            1             78
  CLUS_2            6            120
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPC4 MUTATED        1      6      1      0
  GPC4 WILD-TYPE     70     70     33     63
D600V2, multiclass
        clus
vv       GPC4 MUTATED GPC4 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            6             70
  CLUS_3            1             33
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPC4 MUTATED        0      3      3      1      0
  GPC4 WILD-TYPE     16     59     48     64     55
D600V3, multiclass
        clus
vv       GPC4 MUTATED GPC4 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            3             59
  CLUS_3            3             48
  CLUS_4            1             64
  CLUS_5            0             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPC4 MUTATED        2      3      2      0
  GPC4 WILD-TYPE     96     41     48     57
D600V4, multiclass
        clus
vv       GPC4 MUTATED GPC4 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            3             41
  CLUS_3            2             48
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPC4 MUTATED        4      0      2      3      0
  GPC4 WILD-TYPE     58     59     38     34     59
D600V5, multiclass
        clus
vv       GPC4 MUTATED GPC4 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            0             59
  CLUS_3            2             38
  CLUS_4            3             34
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPC4 MUTATED        0      0      9
  GPC4 WILD-TYPE    106     54     88
D600V6, multiclass
        clus
vv       GPC4 MUTATED GPC4 WILD-TYPE
  CLUS_1            0            106
  CLUS_2            0             54
  CLUS_3            9             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPC4 MUTATED        8      0      1
  GPC4 WILD-TYPE    115     95     70
D600V7, multiclass
        clus
vv       GPC4 MUTATED GPC4 WILD-TYPE
  CLUS_1            8            115
  CLUS_2            0             95
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPC4 MUTATED        9      0      0
  GPC4 WILD-TYPE    148     63     69
D600V8, multiclass
        clus
vv       GPC4 MUTATED GPC4 WILD-TYPE
  CLUS_1            9            148
  CLUS_2            0             63
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPC4 MUTATED        2      2      1      3      0      0
  GPC4 WILD-TYPE     31     17     58     36     16     45
D600V9, multiclass
        clus
vv       GPC4 MUTATED GPC4 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            2             17
  CLUS_3            1             58
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPC4 MUTATED        5      0      1      1      1      0
  GPC4 WILD-TYPE     42     39     34     31     22     35
D600V10, multiclass
        clus
vv       GPC4 MUTATED GPC4 WILD-TYPE
  CLUS_1            5             42
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(601) Variable = GANAB MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GANAB MUTATED        0     10      1      0      0
  GANAB WILD-TYPE     79    116     26     43     12
D601V1, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             0              79
  CLUS_2            10             116
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GANAB MUTATED        0      8      1      1
  GANAB WILD-TYPE     71     68     33     62
D601V2, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             0              71
  CLUS_2             8              68
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GANAB MUTATED        1      2      4      1      3
  GANAB WILD-TYPE     15     60     47     64     52
D601V3, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              60
  CLUS_3             4              47
  CLUS_4             1              64
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GANAB MUTATED        2      7      1      1
  GANAB WILD-TYPE     96     37     49     56
D601V4, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             2              96
  CLUS_2             7              37
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GANAB MUTATED        7      2      0      2      0
  GANAB WILD-TYPE     55     57     40     35     59
D601V5, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             7              55
  CLUS_2             2              57
  CLUS_3             0              40
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GANAB MUTATED        2      2      7
  GANAB WILD-TYPE    104     52     90
D601V6, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             2             104
  CLUS_2             2              52
  CLUS_3             7              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GANAB MUTATED        8      2      1
  GANAB WILD-TYPE    115     93     70
D601V7, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             8             115
  CLUS_2             2              93
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GANAB MUTATED        9      2      0
  GANAB WILD-TYPE    148     61     69
D601V8, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             9             148
  CLUS_2             2              61
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GANAB MUTATED        1      2      4      2      0      1
  GANAB WILD-TYPE     32     17     55     37     16     44
D601V9, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              17
  CLUS_3             4              55
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GANAB MUTATED        3      1      3      2      1      0
  GANAB WILD-TYPE     44     38     32     30     22     35
D601V10, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             3              44
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             2              30
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(602) Variable = RNMT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNMT MUTATED        0      7      1      0      0
  RNMT WILD-TYPE     79    119     26     43     12
D602V1, multiclass
        clus
vv       RNMT MUTATED RNMT WILD-TYPE
  CLUS_1            0             79
  CLUS_2            7            119
  CLUS_3            1             26
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNMT MUTATED        0      3      2      2
  RNMT WILD-TYPE     71     73     32     61
D602V2, multiclass
        clus
vv       RNMT MUTATED RNMT WILD-TYPE
  CLUS_1            0             71
  CLUS_2            3             73
  CLUS_3            2             32
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNMT MUTATED        1      3      1      0      2
  RNMT WILD-TYPE     15     59     50     65     53
D602V3, multiclass
        clus
vv       RNMT MUTATED RNMT WILD-TYPE
  CLUS_1            1             15
  CLUS_2            3             59
  CLUS_3            1             50
  CLUS_4            0             65
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNMT MUTATED        1      4      2      0
  RNMT WILD-TYPE     97     40     48     57
D602V4, multiclass
        clus
vv       RNMT MUTATED RNMT WILD-TYPE
  CLUS_1            1             97
  CLUS_2            4             40
  CLUS_3            2             48
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNMT MUTATED        6      1      0      1      0
  RNMT WILD-TYPE     56     58     40     36     59
D602V5, multiclass
        clus
vv       RNMT MUTATED RNMT WILD-TYPE
  CLUS_1            6             56
  CLUS_2            1             58
  CLUS_3            0             40
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RNMT MUTATED        4      0      4
  RNMT WILD-TYPE    102     54     93
D602V6, multiclass
        clus
vv       RNMT MUTATED RNMT WILD-TYPE
  CLUS_1            4            102
  CLUS_2            0             54
  CLUS_3            4             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RNMT MUTATED        8      0      0
  RNMT WILD-TYPE    115     95     71
D602V7, multiclass
        clus
vv       RNMT MUTATED RNMT WILD-TYPE
  CLUS_1            8            115
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RNMT MUTATED        7      1      0
  RNMT WILD-TYPE    150     62     69
D602V8, multiclass
        clus
vv       RNMT MUTATED RNMT WILD-TYPE
  CLUS_1            7            150
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RNMT MUTATED        1      1      4      1      0      0
  RNMT WILD-TYPE     32     18     55     38     16     45
D602V9, multiclass
        clus
vv       RNMT MUTATED RNMT WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            4             55
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RNMT MUTATED        1      0      4      1      1      0
  RNMT WILD-TYPE     46     39     31     31     22     35
D602V10, multiclass
        clus
vv       RNMT MUTATED RNMT WILD-TYPE
  CLUS_1            1             46
  CLUS_2            0             39
  CLUS_3            4             31
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(603) Variable = IGSF21 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGSF21 MUTATED        0      2      1      0      0
  IGSF21 WILD-TYPE     79    124     26     43     12
D603V1, multiclass
        clus
vv       IGSF21 MUTATED IGSF21 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              2              124
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGSF21 MUTATED        0      2      0      1
  IGSF21 WILD-TYPE     71     74     34     62
D603V2, multiclass
        clus
vv       IGSF21 MUTATED IGSF21 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              2               74
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGSF21 MUTATED        1      1      0      0      0
  IGSF21 WILD-TYPE     15     61     51     65     55
D603V3, multiclass
[1] "Remove cluster labels:" "IGSF21 MUTATED"        
clus
  IGSF21 MUTATED IGSF21 WILD-TYPE 
               2              247 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-4187       TCGA-BR-4188       TCGA-BR-4191       TCGA-BR-4201 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256       TCGA-BR-4257 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280       TCGA-BR-4292 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-4294       TCGA-BR-4357       TCGA-BR-4361       TCGA-BR-4362 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-4363       TCGA-BR-4366       TCGA-BR-4368       TCGA-BR-4369 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-4370       TCGA-BR-4371       TCGA-BR-6452       TCGA-BR-6453 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6710 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7715 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8080 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-8081       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8297 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-8360       TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-8369       TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-8483       TCGA-BR-8484       TCGA-BR-8485       TCGA-BR-8486 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-8588       TCGA-BR-8589       TCGA-BR-8590       TCGA-BR-8591 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8678 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-8686       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-A44U       TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J2 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-A4J4       TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-A4PD       TCGA-BR-A4PE       TCGA-BR-A4PF       TCGA-BR-A4QI 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8528       TCGA-CD-8529 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8534 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CD-A489       TCGA-CD-A48A       TCGA-CD-A48C       TCGA-CD-A4MG 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CD-A4MH       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4442 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4474 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CG-4475       TCGA-CG-4476       TCGA-CG-4477       TCGA-CG-5717 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-D7-6525       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8573       TCGA-D7-8574 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-D7-8575       TCGA-D7-8578       TCGA-D7-A4YT       TCGA-D7-A4YU 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY       TCGA-D7-A4Z0 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-EQ-8122       TCGA-EQ-A4SO       TCGA-F1-6177       TCGA-F1-6874 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7916       TCGA-FP-7998 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-HF-7132       TCGA-HF-7133       TCGA-HF-7136       TCGA-HJ-7597 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-HU-8602       TCGA-HU-8608       TCGA-HU-8610       TCGA-HU-A4GF 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GU       TCGA-HU-A4GX 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-HU-A4GY       TCGA-HU-A4H2       TCGA-HU-A4H3       TCGA-HU-A4H4 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-HU-A4H5       TCGA-HU-A4HD       TCGA-IN-7806       TCGA-IN-7808 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-IN-8462       TCGA-IN-8663       TCGA-IP-7968 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGSF21 MUTATED        1      0      1      0
  IGSF21 WILD-TYPE     97     44     49     57
D603V4, multiclass
[1] "Remove cluster labels:" "IGSF21 MUTATED"        
clus
  IGSF21 MUTATED IGSF21 WILD-TYPE 
               2              247 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-4187       TCGA-BR-4188       TCGA-BR-4191       TCGA-BR-4201 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256       TCGA-BR-4257 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280       TCGA-BR-4292 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-4294       TCGA-BR-4357       TCGA-BR-4361       TCGA-BR-4362 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-4363       TCGA-BR-4366       TCGA-BR-4368       TCGA-BR-4369 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-4370       TCGA-BR-4371       TCGA-BR-6452       TCGA-BR-6453 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6710 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7715 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8080 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-8081       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8297 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-8360       TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-8369       TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-8483       TCGA-BR-8484       TCGA-BR-8485       TCGA-BR-8486 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-8588       TCGA-BR-8589       TCGA-BR-8590       TCGA-BR-8591 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8678 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-8686       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-A44U       TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J2 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-A4J4       TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-A4PD       TCGA-BR-A4PE       TCGA-BR-A4PF       TCGA-BR-A4QI 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8528       TCGA-CD-8529 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8534 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CD-A489       TCGA-CD-A48A       TCGA-CD-A48C       TCGA-CD-A4MG 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CD-A4MH       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4442 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469       TCGA-CG-4474 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CG-4475       TCGA-CG-4476       TCGA-CG-4477       TCGA-CG-5717 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-D7-6525       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8573       TCGA-D7-8574 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-D7-8575       TCGA-D7-8578       TCGA-D7-A4YT       TCGA-D7-A4YU 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY       TCGA-D7-A4Z0 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-EQ-8122       TCGA-EQ-A4SO       TCGA-F1-6177       TCGA-F1-6874 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7916       TCGA-FP-7998 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-HF-7132       TCGA-HF-7133       TCGA-HF-7136       TCGA-HJ-7597 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-HU-8602       TCGA-HU-8608       TCGA-HU-8610       TCGA-HU-A4GF 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GU       TCGA-HU-A4GX 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-HU-A4GY       TCGA-HU-A4H2       TCGA-HU-A4H3       TCGA-HU-A4H4 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-HU-A4H5       TCGA-HU-A4HD       TCGA-IN-7806       TCGA-IN-7808 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
      TCGA-IN-8462       TCGA-IN-8663       TCGA-IP-7968 
"IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" "IGSF21 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGSF21 MUTATED        2      0      1      0      0
  IGSF21 WILD-TYPE     60     59     39     37     59
D603V5, multiclass
        clus
vv       IGSF21 MUTATED IGSF21 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              0               37
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGSF21 MUTATED        1      0      2
  IGSF21 WILD-TYPE    105     54     95
D603V6, multiclass
        clus
vv       IGSF21 MUTATED IGSF21 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               54
  CLUS_3              2               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGSF21 MUTATED        3      0      0
  IGSF21 WILD-TYPE    120     95     71
D603V7, multiclass
        clus
vv       IGSF21 MUTATED IGSF21 WILD-TYPE
  CLUS_1              3              120
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGSF21 MUTATED        2      1      0
  IGSF21 WILD-TYPE    155     62     69
D603V8, multiclass
        clus
vv       IGSF21 MUTATED IGSF21 WILD-TYPE
  CLUS_1              2              155
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IGSF21 MUTATED        0      1      2      0      0      0
  IGSF21 WILD-TYPE     33     18     57     39     16     45
D603V9, multiclass
        clus
vv       IGSF21 MUTATED IGSF21 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IGSF21 MUTATED        1      0      2      0      0      0
  IGSF21 WILD-TYPE     46     39     33     32     23     35
D603V10, multiclass
        clus
vv       IGSF21 MUTATED IGSF21 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(604) Variable = EPHB6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHB6 MUTATED        1      7      1      1      1
  EPHB6 WILD-TYPE     78    119     26     42     11
D604V1, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             7             119
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHB6 MUTATED        1      8      1      1
  EPHB6 WILD-TYPE     70     68     33     62
D604V2, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             8              68
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHB6 MUTATED        0      7      1      0      2
  EPHB6 WILD-TYPE     16     55     50     65     53
D604V3, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             7              55
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHB6 MUTATED        0      4      6      0
  EPHB6 WILD-TYPE     98     40     44     57
D604V4, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             4              40
  CLUS_3             6              44
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHB6 MUTATED        7      0      0      2      1
  EPHB6 WILD-TYPE     55     59     40     35     58
D604V5, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             7              55
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             2              35
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHB6 MUTATED        1      0      9
  EPHB6 WILD-TYPE    105     54     88
D604V6, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             9              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHB6 MUTATED        7      2      2
  EPHB6 WILD-TYPE    116     93     69
D604V7, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             7             116
  CLUS_2             2              93
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHB6 MUTATED        9      1      1
  EPHB6 WILD-TYPE    148     62     68
D604V8, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             9             148
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPHB6 MUTATED        2      1      4      3      0      0
  EPHB6 WILD-TYPE     31     18     55     36     16     45
D604V9, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              18
  CLUS_3             4              55
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPHB6 MUTATED        4      0      3      1      2      0
  EPHB6 WILD-TYPE     43     39     32     31     21     35
D604V10, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             0              39
  CLUS_3             3              32
  CLUS_4             1              31
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(605) Variable = PNPLA7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PNPLA7 MUTATED        3     11      1      3      2
  PNPLA7 WILD-TYPE     76    115     26     40     10
D605V1, multiclass
        clus
vv       PNPLA7 MUTATED PNPLA7 WILD-TYPE
  CLUS_1              3               76
  CLUS_2             11              115
  CLUS_3              1               26
  CLUS_4              3               40
  CLUS_5              2               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNPLA7 MUTATED        3      9      4      0
  PNPLA7 WILD-TYPE     68     67     30     63
D605V2, multiclass
        clus
vv       PNPLA7 MUTATED PNPLA7 WILD-TYPE
  CLUS_1              3               68
  CLUS_2              9               67
  CLUS_3              4               30
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PNPLA7 MUTATED        1      5      3      0      5
  PNPLA7 WILD-TYPE     15     57     48     65     50
D605V3, multiclass
        clus
vv       PNPLA7 MUTATED PNPLA7 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              5               57
  CLUS_3              3               48
  CLUS_4              0               65
  CLUS_5              5               50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNPLA7 MUTATED        3      6      3      2
  PNPLA7 WILD-TYPE     95     38     47     55
D605V4, multiclass
        clus
vv       PNPLA7 MUTATED PNPLA7 WILD-TYPE
  CLUS_1              3               95
  CLUS_2              6               38
  CLUS_3              3               47
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PNPLA7 MUTATED       10      0      4      3      2
  PNPLA7 WILD-TYPE     52     59     36     34     57
D605V5, multiclass
        clus
vv       PNPLA7 MUTATED PNPLA7 WILD-TYPE
  CLUS_1             10               52
  CLUS_2              0               59
  CLUS_3              4               36
  CLUS_4              3               34
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA7 MUTATED        4      1     14
  PNPLA7 WILD-TYPE    102     53     83
D605V6, multiclass
        clus
vv       PNPLA7 MUTATED PNPLA7 WILD-TYPE
  CLUS_1              4              102
  CLUS_2              1               53
  CLUS_3             14               83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA7 MUTATED       14      4      2
  PNPLA7 WILD-TYPE    109     91     69
D605V7, multiclass
        clus
vv       PNPLA7 MUTATED PNPLA7 WILD-TYPE
  CLUS_1             14              109
  CLUS_2              4               91
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA7 MUTATED       16      1      3
  PNPLA7 WILD-TYPE    141     62     66
D605V8, multiclass
        clus
vv       PNPLA7 MUTATED PNPLA7 WILD-TYPE
  CLUS_1             16              141
  CLUS_2              1               62
  CLUS_3              3               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PNPLA7 MUTATED        1      3      2      6      0      2
  PNPLA7 WILD-TYPE     32     16     57     33     16     43
D605V9, multiclass
        clus
vv       PNPLA7 MUTATED PNPLA7 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              3               16
  CLUS_3              2               57
  CLUS_4              6               33
  CLUS_5              0               16
  CLUS_6              2               43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PNPLA7 MUTATED        7      1      0      1      4      1
  PNPLA7 WILD-TYPE     40     38     35     31     19     34
D605V10, multiclass
        clus
vv       PNPLA7 MUTATED PNPLA7 WILD-TYPE
  CLUS_1              7               40
  CLUS_2              1               38
  CLUS_3              0               35
  CLUS_4              1               31
  CLUS_5              4               19
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(606) Variable = NAA16 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAA16 MUTATED        1      6      0      0      1
  NAA16 WILD-TYPE     78    120     27     43     11
D606V1, multiclass
        clus
vv       NAA16 MUTATED NAA16 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA16 MUTATED        0      3      1      1
  NAA16 WILD-TYPE     71     73     33     62
D606V2, multiclass
        clus
vv       NAA16 MUTATED NAA16 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             3              73
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAA16 MUTATED        0      3      2      0      3
  NAA16 WILD-TYPE     16     59     49     65     52
D606V3, multiclass
        clus
vv       NAA16 MUTATED NAA16 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              59
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA16 MUTATED        3      4      1      0
  NAA16 WILD-TYPE     95     40     49     57
D606V4, multiclass
        clus
vv       NAA16 MUTATED NAA16 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             4              40
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAA16 MUTATED        5      0      1      0      1
  NAA16 WILD-TYPE     57     59     39     37     58
D606V5, multiclass
        clus
vv       NAA16 MUTATED NAA16 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             0              37
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA16 MUTATED        3      0      4
  NAA16 WILD-TYPE    103     54     93
D606V6, multiclass
        clus
vv       NAA16 MUTATED NAA16 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA16 MUTATED        7      0      1
  NAA16 WILD-TYPE    116     95     70
D606V7, multiclass
        clus
vv       NAA16 MUTATED NAA16 WILD-TYPE
  CLUS_1             7             116
  CLUS_2             0              95
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA16 MUTATED        5      1      2
  NAA16 WILD-TYPE    152     62     67
D606V8, multiclass
        clus
vv       NAA16 MUTATED NAA16 WILD-TYPE
  CLUS_1             5             152
  CLUS_2             1              62
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NAA16 MUTATED        2      0      4      0      0      0
  NAA16 WILD-TYPE     31     19     55     39     16     45
D606V9, multiclass
        clus
vv       NAA16 MUTATED NAA16 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              19
  CLUS_3             4              55
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NAA16 MUTATED        1      0      3      1      0      1
  NAA16 WILD-TYPE     46     39     32     31     23     34
D606V10, multiclass
        clus
vv       NAA16 MUTATED NAA16 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              39
  CLUS_3             3              32
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(607) Variable = NF1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NF1 MUTATED        2     16      5      0      1
  NF1 WILD-TYPE     77    110     22     43     11
D607V1, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           2            77
  CLUS_2          16           110
  CLUS_3           5            22
  CLUS_4           0            43
  CLUS_5           1            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED        1      9      4      1
  NF1 WILD-TYPE     70     67     30     62
D607V2, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           1            70
  CLUS_2           9            67
  CLUS_3           4            30
  CLUS_4           1            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NF1 MUTATED        1      8      6      1      5
  NF1 WILD-TYPE     15     54     45     64     50
D607V3, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           1            15
  CLUS_2           8            54
  CLUS_3           6            45
  CLUS_4           1            64
  CLUS_5           5            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED        4     11      4      2
  NF1 WILD-TYPE     94     33     46     55
D607V4, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           4            94
  CLUS_2          11            33
  CLUS_3           4            46
  CLUS_4           2            55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NF1 MUTATED        8      3      3      5      2
  NF1 WILD-TYPE     54     56     37     32     57
D607V5, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           8            54
  CLUS_2           3            56
  CLUS_3           3            37
  CLUS_4           5            32
  CLUS_5           2            57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED        5      2     14
  NF1 WILD-TYPE    101     52     83
D607V6, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           5           101
  CLUS_2           2            52
  CLUS_3          14            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED       17      4      3
  NF1 WILD-TYPE    106     91     68
D607V7, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          17           106
  CLUS_2           4            91
  CLUS_3           3            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED       19      3      2
  NF1 WILD-TYPE    138     60     67
D607V8, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          19           138
  CLUS_2           3            60
  CLUS_3           2            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NF1 MUTATED        2      2      6      2      0      1
  NF1 WILD-TYPE     31     17     53     37     16     44
D607V9, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           2            31
  CLUS_2           2            17
  CLUS_3           6            53
  CLUS_4           2            37
  CLUS_5           0            16
  CLUS_6           1            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NF1 MUTATED        3      1      3      2      4      0
  NF1 WILD-TYPE     44     38     32     30     19     35
D607V10, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           3            44
  CLUS_2           1            38
  CLUS_3           3            32
  CLUS_4           2            30
  CLUS_5           4            19
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(608) Variable = GALK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GALK1 MUTATED        0      2      1      0      0
  GALK1 WILD-TYPE     79    124     26     43     12
D608V1, multiclass
        clus
vv       GALK1 MUTATED GALK1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             2             124
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GALK1 MUTATED        0      2      0      0
  GALK1 WILD-TYPE     71     74     34     63
D608V2, multiclass
[1] "Remove cluster labels:" "GALK1 MUTATED"         
clus
  GALK1 MUTATED GALK1 WILD-TYPE 
              2             242 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8589 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U      TCGA-BR-A452 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J6 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48A 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-5717      TCGA-CG-5718 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-EQ-5647      TCGA-EQ-8122      TCGA-EQ-A4SO 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-FP-8631      TCGA-FP-A4BF      TCGA-HF-7132      TCGA-HF-7133 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-8249      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4G3      TCGA-HU-A4G6 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4G8      TCGA-HU-A4G9      TCGA-HU-A4GC      TCGA-HU-A4GD 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GP 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H0      TCGA-HU-A4H2      TCGA-HU-A4H3 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-IN-8663      TCGA-IP-7968 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GALK1 MUTATED        0      1      0      0      2
  GALK1 WILD-TYPE     16     61     51     65     53
D608V3, multiclass
        clus
vv       GALK1 MUTATED GALK1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              61
  CLUS_3             0              51
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GALK1 MUTATED        0      2      1      0
  GALK1 WILD-TYPE     98     42     49     57
D608V4, multiclass
        clus
vv       GALK1 MUTATED GALK1 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             2              42
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GALK1 MUTATED        1      1      0      2      0
  GALK1 WILD-TYPE     61     58     40     35     59
D608V5, multiclass
        clus
vv       GALK1 MUTATED GALK1 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GALK1 MUTATED        1      0      3
  GALK1 WILD-TYPE    105     54     94
D608V6, multiclass
        clus
vv       GALK1 MUTATED GALK1 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GALK1 MUTATED        4      0      0
  GALK1 WILD-TYPE    119     95     71
D608V7, multiclass
        clus
vv       GALK1 MUTATED GALK1 WILD-TYPE
  CLUS_1             4             119
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GALK1 MUTATED        4      0      0
  GALK1 WILD-TYPE    153     63     69
D608V8, multiclass
        clus
vv       GALK1 MUTATED GALK1 WILD-TYPE
  CLUS_1             4             153
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GALK1 MUTATED        1      1      0      0      0      0
  GALK1 WILD-TYPE     32     18     59     39     16     45
D608V9, multiclass
[1] "Remove cluster labels:" "GALK1 MUTATED"         
clus
  GALK1 MUTATED GALK1 WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-A489      TCGA-CD-A48C      TCGA-CD-A4MH      TCGA-CD-A4MI 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-HF-7132      TCGA-HF-7136 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC      TCGA-HU-A4GD 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-IP-7968 
"GALK1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GALK1 MUTATED        2      0      0      0      0      0
  GALK1 WILD-TYPE     45     39     35     32     23     35
D608V10, multiclass
[1] "Remove cluster labels:" "GALK1 MUTATED"         
clus
  GALK1 MUTATED GALK1 WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-A489      TCGA-CD-A48C      TCGA-CD-A4MH      TCGA-CD-A4MI 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-HF-7132      TCGA-HF-7136 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC      TCGA-HU-A4GD 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-IP-7968 
"GALK1 WILD-TYPE" 

Clustering(609) Variable = CHGB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHGB MUTATED        2      7      2      1      0
  CHGB WILD-TYPE     77    119     25     42     12
D609V1, multiclass
        clus
vv       CHGB MUTATED CHGB WILD-TYPE
  CLUS_1            2             77
  CLUS_2            7            119
  CLUS_3            2             25
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHGB MUTATED        3      6      2      0
  CHGB WILD-TYPE     68     70     32     63
D609V2, multiclass
        clus
vv       CHGB MUTATED CHGB WILD-TYPE
  CLUS_1            3             68
  CLUS_2            6             70
  CLUS_3            2             32
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHGB MUTATED        2      2      3      0      4
  CHGB WILD-TYPE     14     60     48     65     51
D609V3, multiclass
        clus
vv       CHGB MUTATED CHGB WILD-TYPE
  CLUS_1            2             14
  CLUS_2            2             60
  CLUS_3            3             48
  CLUS_4            0             65
  CLUS_5            4             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHGB MUTATED        3      6      0      2
  CHGB WILD-TYPE     95     38     50     55
D609V4, multiclass
        clus
vv       CHGB MUTATED CHGB WILD-TYPE
  CLUS_1            3             95
  CLUS_2            6             38
  CLUS_3            0             50
  CLUS_4            2             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHGB MUTATED        6      1      2      1      1
  CHGB WILD-TYPE     56     58     38     36     58
D609V5, multiclass
        clus
vv       CHGB MUTATED CHGB WILD-TYPE
  CLUS_1            6             56
  CLUS_2            1             58
  CLUS_3            2             38
  CLUS_4            1             36
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHGB MUTATED        2      2      7
  CHGB WILD-TYPE    104     52     90
D609V6, multiclass
        clus
vv       CHGB MUTATED CHGB WILD-TYPE
  CLUS_1            2            104
  CLUS_2            2             52
  CLUS_3            7             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHGB MUTATED        8      1      3
  CHGB WILD-TYPE    115     94     68
D609V7, multiclass
        clus
vv       CHGB MUTATED CHGB WILD-TYPE
  CLUS_1            8            115
  CLUS_2            1             94
  CLUS_3            3             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHGB MUTATED        7      1      4
  CHGB WILD-TYPE    150     62     65
D609V8, multiclass
        clus
vv       CHGB MUTATED CHGB WILD-TYPE
  CLUS_1            7            150
  CLUS_2            1             62
  CLUS_3            4             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CHGB MUTATED        3      1      4      2      0      1
  CHGB WILD-TYPE     30     18     55     37     16     44
D609V9, multiclass
        clus
vv       CHGB MUTATED CHGB WILD-TYPE
  CLUS_1            3             30
  CLUS_2            1             18
  CLUS_3            4             55
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CHGB MUTATED        3      0      3      3      2      0
  CHGB WILD-TYPE     44     39     32     29     21     35
D609V10, multiclass
        clus
vv       CHGB MUTATED CHGB WILD-TYPE
  CLUS_1            3             44
  CLUS_2            0             39
  CLUS_3            3             32
  CLUS_4            3             29
  CLUS_5            2             21
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(610) Variable = TCF7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCF7 MUTATED        0      5      2      0      1
  TCF7 WILD-TYPE     79    121     25     43     11
D610V1, multiclass
        clus
vv       TCF7 MUTATED TCF7 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            5            121
  CLUS_3            2             25
  CLUS_4            0             43
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF7 MUTATED        1      3      1      2
  TCF7 WILD-TYPE     70     73     33     61
D610V2, multiclass
        clus
vv       TCF7 MUTATED TCF7 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            3             73
  CLUS_3            1             33
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCF7 MUTATED        1      3      1      0      2
  TCF7 WILD-TYPE     15     59     50     65     53
D610V3, multiclass
        clus
vv       TCF7 MUTATED TCF7 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            3             59
  CLUS_3            1             50
  CLUS_4            0             65
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF7 MUTATED        2      2      3      0
  TCF7 WILD-TYPE     96     42     47     57
D610V4, multiclass
        clus
vv       TCF7 MUTATED TCF7 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            2             42
  CLUS_3            3             47
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCF7 MUTATED        5      0      1      0      0
  TCF7 WILD-TYPE     57     59     39     37     59
D610V5, multiclass
        clus
vv       TCF7 MUTATED TCF7 WILD-TYPE
  CLUS_1            5             57
  CLUS_2            0             59
  CLUS_3            1             39
  CLUS_4            0             37
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TCF7 MUTATED        1      0      5
  TCF7 WILD-TYPE    105     54     92
D610V6, multiclass
        clus
vv       TCF7 MUTATED TCF7 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TCF7 MUTATED        6      1      1
  TCF7 WILD-TYPE    117     94     70
D610V7, multiclass
        clus
vv       TCF7 MUTATED TCF7 WILD-TYPE
  CLUS_1            6            117
  CLUS_2            1             94
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TCF7 MUTATED        5      2      1
  TCF7 WILD-TYPE    152     61     68
D610V8, multiclass
        clus
vv       TCF7 MUTATED TCF7 WILD-TYPE
  CLUS_1            5            152
  CLUS_2            2             61
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TCF7 MUTATED        0      0      3      2      0      1
  TCF7 WILD-TYPE     33     19     56     37     16     44
D610V9, multiclass
        clus
vv       TCF7 MUTATED TCF7 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            0             19
  CLUS_3            3             56
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TCF7 MUTATED        1      1      2      2      0      0
  TCF7 WILD-TYPE     46     38     33     30     23     35
D610V10, multiclass
        clus
vv       TCF7 MUTATED TCF7 WILD-TYPE
  CLUS_1            1             46
  CLUS_2            1             38
  CLUS_3            2             33
  CLUS_4            2             30
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(611) Variable = PIAS3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIAS3 MUTATED        0      3      0      0      2
  PIAS3 WILD-TYPE     79    123     27     43     10
D611V1, multiclass
        clus
vv       PIAS3 MUTATED PIAS3 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             3             123
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIAS3 MUTATED        0      0      2      1
  PIAS3 WILD-TYPE     71     76     32     62
D611V2, multiclass
        clus
vv       PIAS3 MUTATED PIAS3 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             0              76
  CLUS_3             2              32
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIAS3 MUTATED        0      1      0      0      3
  PIAS3 WILD-TYPE     16     61     51     65     52
D611V3, multiclass
        clus
vv       PIAS3 MUTATED PIAS3 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              61
  CLUS_3             0              51
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIAS3 MUTATED        3      0      0      1
  PIAS3 WILD-TYPE     95     44     50     56
D611V4, multiclass
        clus
vv       PIAS3 MUTATED PIAS3 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             0              44
  CLUS_3             0              50
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIAS3 MUTATED        4      0      0      0      0
  PIAS3 WILD-TYPE     58     59     40     37     59
D611V5, multiclass
        clus
vv       PIAS3 MUTATED PIAS3 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PIAS3 MUTATED        1      0      3
  PIAS3 WILD-TYPE    105     54     94
D611V6, multiclass
        clus
vv       PIAS3 MUTATED PIAS3 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PIAS3 MUTATED        5      0      0
  PIAS3 WILD-TYPE    118     95     71
D611V7, multiclass
        clus
vv       PIAS3 MUTATED PIAS3 WILD-TYPE
  CLUS_1             5             118
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PIAS3 MUTATED        5      0      0
  PIAS3 WILD-TYPE    152     63     69
D611V8, multiclass
        clus
vv       PIAS3 MUTATED PIAS3 WILD-TYPE
  CLUS_1             5             152
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIAS3 MUTATED        0      0      1      1      0      0
  PIAS3 WILD-TYPE     33     19     58     38     16     45
D611V9, multiclass
[1] "Remove cluster labels:" "PIAS3 MUTATED"         
clus
  PIAS3 MUTATED PIAS3 WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8364      TCGA-BR-8365 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J6      TCGA-BR-A4J7 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48C 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CG-4437 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717      TCGA-CG-5718 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-EQ-5647 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7998 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132      TCGA-HF-7136 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC      TCGA-HU-A4GD 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-IP-7968 
"PIAS3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIAS3 MUTATED        0      0      0      0      2      0
  PIAS3 WILD-TYPE     47     39     35     32     21     35
D611V10, multiclass
[1] "Remove cluster labels:" "PIAS3 MUTATED"         
clus
  PIAS3 MUTATED PIAS3 WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8364      TCGA-BR-8365 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J6      TCGA-BR-A4J7 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48C 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CG-4437 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717      TCGA-CG-5718 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-EQ-5647 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7998 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132      TCGA-HF-7136 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC      TCGA-HU-A4GD 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" "PIAS3 WILD-TYPE" 
     TCGA-IP-7968 
"PIAS3 WILD-TYPE" 

Clustering(612) Variable = SLC12A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC12A1 MUTATED        3     14      2      2      0
  SLC12A1 WILD-TYPE     76    112     25     41     12
D612V1, multiclass
        clus
vv       SLC12A1 MUTATED SLC12A1 WILD-TYPE
  CLUS_1               3                76
  CLUS_2              14               112
  CLUS_3               2                25
  CLUS_4               2                41
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A1 MUTATED        2     12      1      2
  SLC12A1 WILD-TYPE     69     64     33     61
D612V2, multiclass
        clus
vv       SLC12A1 MUTATED SLC12A1 WILD-TYPE
  CLUS_1               2                69
  CLUS_2              12                64
  CLUS_3               1                33
  CLUS_4               2                61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC12A1 MUTATED        1      4      4      4      6
  SLC12A1 WILD-TYPE     15     58     47     61     49
D612V3, multiclass
        clus
vv       SLC12A1 MUTATED SLC12A1 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               4                58
  CLUS_3               4                47
  CLUS_4               4                61
  CLUS_5               6                49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A1 MUTATED        4      8      3      4
  SLC12A1 WILD-TYPE     94     36     47     53
D612V4, multiclass
        clus
vv       SLC12A1 MUTATED SLC12A1 WILD-TYPE
  CLUS_1               4                94
  CLUS_2               8                36
  CLUS_3               3                47
  CLUS_4               4                53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC12A1 MUTATED        8      4      0      5      2
  SLC12A1 WILD-TYPE     54     55     40     32     57
D612V5, multiclass
        clus
vv       SLC12A1 MUTATED SLC12A1 WILD-TYPE
  CLUS_1               8                54
  CLUS_2               4                55
  CLUS_3               0                40
  CLUS_4               5                32
  CLUS_5               2                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A1 MUTATED        4      5     10
  SLC12A1 WILD-TYPE    102     49     87
D612V6, multiclass
        clus
vv       SLC12A1 MUTATED SLC12A1 WILD-TYPE
  CLUS_1               4               102
  CLUS_2               5                49
  CLUS_3              10                87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A1 MUTATED       11      8      2
  SLC12A1 WILD-TYPE    112     87     69
D612V7, multiclass
        clus
vv       SLC12A1 MUTATED SLC12A1 WILD-TYPE
  CLUS_1              11               112
  CLUS_2               8                87
  CLUS_3               2                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A1 MUTATED       13      5      3
  SLC12A1 WILD-TYPE    144     58     66
D612V8, multiclass
        clus
vv       SLC12A1 MUTATED SLC12A1 WILD-TYPE
  CLUS_1              13               144
  CLUS_2               5                58
  CLUS_3               3                66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC12A1 MUTATED        3      4      2      4      0      3
  SLC12A1 WILD-TYPE     30     15     57     35     16     42
D612V9, multiclass
        clus
vv       SLC12A1 MUTATED SLC12A1 WILD-TYPE
  CLUS_1               3                30
  CLUS_2               4                15
  CLUS_3               2                57
  CLUS_4               4                35
  CLUS_5               0                16
  CLUS_6               3                42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC12A1 MUTATED        6      2      1      2      3      2
  SLC12A1 WILD-TYPE     41     37     34     30     20     33
D612V10, multiclass
        clus
vv       SLC12A1 MUTATED SLC12A1 WILD-TYPE
  CLUS_1               6                41
  CLUS_2               2                37
  CLUS_3               1                34
  CLUS_4               2                30
  CLUS_5               3                20
  CLUS_6               2                33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(613) Variable = IFNA17 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFNA17 MUTATED        1      2      0      1      0
  IFNA17 WILD-TYPE     78    124     27     42     12
D613V1, multiclass
        clus
vv       IFNA17 MUTATED IFNA17 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              2              124
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNA17 MUTATED        2      0      0      1
  IFNA17 WILD-TYPE     69     76     34     62
D613V2, multiclass
        clus
vv       IFNA17 MUTATED IFNA17 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              0               76
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFNA17 MUTATED        1      0      1      0      2
  IFNA17 WILD-TYPE     15     62     50     65     53
D613V3, multiclass
        clus
vv       IFNA17 MUTATED IFNA17 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              0               62
  CLUS_3              1               50
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNA17 MUTATED        3      1      0      0
  IFNA17 WILD-TYPE     95     43     50     57
D613V4, multiclass
        clus
vv       IFNA17 MUTATED IFNA17 WILD-TYPE
  CLUS_1              3               95
  CLUS_2              1               43
  CLUS_3              0               50
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFNA17 MUTATED        2      0      1      0      1
  IFNA17 WILD-TYPE     60     59     39     37     58
D613V5, multiclass
        clus
vv       IFNA17 MUTATED IFNA17 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              0               37
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFNA17 MUTATED        1      0      3
  IFNA17 WILD-TYPE    105     54     94
D613V6, multiclass
        clus
vv       IFNA17 MUTATED IFNA17 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               54
  CLUS_3              3               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFNA17 MUTATED        3      0      1
  IFNA17 WILD-TYPE    120     95     70
D613V7, multiclass
        clus
vv       IFNA17 MUTATED IFNA17 WILD-TYPE
  CLUS_1              3              120
  CLUS_2              0               95
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFNA17 MUTATED        2      0      2
  IFNA17 WILD-TYPE    155     63     67
D613V8, multiclass
        clus
vv       IFNA17 MUTATED IFNA17 WILD-TYPE
  CLUS_1              2              155
  CLUS_2              0               63
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IFNA17 MUTATED        0      0      2      0      0      1
  IFNA17 WILD-TYPE     33     19     57     39     16     44
D613V9, multiclass
        clus
vv       IFNA17 MUTATED IFNA17 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               19
  CLUS_3              2               57
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IFNA17 MUTATED        1      0      1      0      0      1
  IFNA17 WILD-TYPE     46     39     34     32     23     34
D613V10, multiclass
        clus
vv       IFNA17 MUTATED IFNA17 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(614) Variable = SPATA5L1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPATA5L1 MUTATED        1      5      1      0      0
  SPATA5L1 WILD-TYPE     78    121     26     43     12
D614V1, multiclass
        clus
vv       SPATA5L1 MUTATED SPATA5L1 WILD-TYPE
  CLUS_1                1                 78
  CLUS_2                5                121
  CLUS_3                1                 26
  CLUS_4                0                 43
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPATA5L1 MUTATED        0      2      5      0
  SPATA5L1 WILD-TYPE     71     74     29     63
D614V2, multiclass
        clus
vv       SPATA5L1 MUTATED SPATA5L1 WILD-TYPE
  CLUS_1                0                 71
  CLUS_2                2                 74
  CLUS_3                5                 29
  CLUS_4                0                 63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPATA5L1 MUTATED        0      3      1      0      1
  SPATA5L1 WILD-TYPE     16     59     50     65     54
D614V3, multiclass
        clus
vv       SPATA5L1 MUTATED SPATA5L1 WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                3                 59
  CLUS_3                1                 50
  CLUS_4                0                 65
  CLUS_5                1                 54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPATA5L1 MUTATED        0      3      2      0
  SPATA5L1 WILD-TYPE     98     41     48     57
D614V4, multiclass
        clus
vv       SPATA5L1 MUTATED SPATA5L1 WILD-TYPE
  CLUS_1                0                 98
  CLUS_2                3                 41
  CLUS_3                2                 48
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPATA5L1 MUTATED        5      0      0      0      0
  SPATA5L1 WILD-TYPE     57     59     40     37     59
D614V5, multiclass
        clus
vv       SPATA5L1 MUTATED SPATA5L1 WILD-TYPE
  CLUS_1                5                 57
  CLUS_2                0                 59
  CLUS_3                0                 40
  CLUS_4                0                 37
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SPATA5L1 MUTATED        2      0      3
  SPATA5L1 WILD-TYPE    104     54     94
D614V6, multiclass
        clus
vv       SPATA5L1 MUTATED SPATA5L1 WILD-TYPE
  CLUS_1                2                104
  CLUS_2                0                 54
  CLUS_3                3                 94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SPATA5L1 MUTATED        4      2      1
  SPATA5L1 WILD-TYPE    119     93     70
D614V7, multiclass
        clus
vv       SPATA5L1 MUTATED SPATA5L1 WILD-TYPE
  CLUS_1                4                119
  CLUS_2                2                 93
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SPATA5L1 MUTATED        5      2      0
  SPATA5L1 WILD-TYPE    152     61     69
D614V8, multiclass
        clus
vv       SPATA5L1 MUTATED SPATA5L1 WILD-TYPE
  CLUS_1                5                152
  CLUS_2                2                 61
  CLUS_3                0                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPATA5L1 MUTATED        1      0      3      1      0      1
  SPATA5L1 WILD-TYPE     32     19     56     38     16     44
D614V9, multiclass
        clus
vv       SPATA5L1 MUTATED SPATA5L1 WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                0                 19
  CLUS_3                3                 56
  CLUS_4                1                 38
  CLUS_5                0                 16
  CLUS_6                1                 44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPATA5L1 MUTATED        0      1      3      1      1      0
  SPATA5L1 WILD-TYPE     47     38     32     31     22     35
D614V10, multiclass
        clus
vv       SPATA5L1 MUTATED SPATA5L1 WILD-TYPE
  CLUS_1                0                 47
  CLUS_2                1                 38
  CLUS_3                3                 32
  CLUS_4                1                 31
  CLUS_5                1                 22
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(615) Variable = SYCP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYCP2 MUTATED        3     11      0      0      1
  SYCP2 WILD-TYPE     76    115     27     43     11
D615V1, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             3              76
  CLUS_2            11             115
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYCP2 MUTATED        1      6      0      1
  SYCP2 WILD-TYPE     70     70     34     62
D615V2, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             6              70
  CLUS_3             0              34
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYCP2 MUTATED        1      5      1      0      5
  SYCP2 WILD-TYPE     15     57     50     65     50
D615V3, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             5              57
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYCP2 MUTATED        3      7      2      0
  SYCP2 WILD-TYPE     95     37     48     57
D615V4, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             7              37
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYCP2 MUTATED        7      1      1      3      1
  SYCP2 WILD-TYPE     55     58     39     34     58
D615V5, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             7              55
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             3              34
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYCP2 MUTATED        2      0     11
  SYCP2 WILD-TYPE    104     54     86
D615V6, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3            11              86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYCP2 MUTATED       14      0      1
  SYCP2 WILD-TYPE    109     95     70
D615V7, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1            14             109
  CLUS_2             0              95
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYCP2 MUTATED       13      0      2
  SYCP2 WILD-TYPE    144     63     67
D615V8, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1            13             144
  CLUS_2             0              63
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SYCP2 MUTATED        2      2      3      1      0      0
  SYCP2 WILD-TYPE     31     17     56     38     16     45
D615V9, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             2              17
  CLUS_3             3              56
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SYCP2 MUTATED        5      0      2      1      0      0
  SYCP2 WILD-TYPE     42     39     33     31     23     35
D615V10, multiclass
        clus
vv       SYCP2 MUTATED SYCP2 WILD-TYPE
  CLUS_1             5              42
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(616) Variable = CNGA4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNGA4 MUTATED        4     12      1      1      0
  CNGA4 WILD-TYPE     75    114     26     42     12
D616V1, multiclass
        clus
vv       CNGA4 MUTATED CNGA4 WILD-TYPE
  CLUS_1             4              75
  CLUS_2            12             114
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNGA4 MUTATED        2      7      3      3
  CNGA4 WILD-TYPE     69     69     31     60
D616V2, multiclass
        clus
vv       CNGA4 MUTATED CNGA4 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             7              69
  CLUS_3             3              31
  CLUS_4             3              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNGA4 MUTATED        1      6      1      3      5
  CNGA4 WILD-TYPE     15     56     50     62     50
D616V3, multiclass
        clus
vv       CNGA4 MUTATED CNGA4 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             6              56
  CLUS_3             1              50
  CLUS_4             3              62
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNGA4 MUTATED        3      8      2      3
  CNGA4 WILD-TYPE     95     36     48     54
D616V4, multiclass
        clus
vv       CNGA4 MUTATED CNGA4 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             8              36
  CLUS_3             2              48
  CLUS_4             3              54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNGA4 MUTATED        8      1      1      1      3
  CNGA4 WILD-TYPE     54     58     39     36     56
D616V5, multiclass
        clus
vv       CNGA4 MUTATED CNGA4 WILD-TYPE
  CLUS_1             8              54
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             3              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNGA4 MUTATED        7      1      6
  CNGA4 WILD-TYPE     99     53     91
D616V6, multiclass
        clus
vv       CNGA4 MUTATED CNGA4 WILD-TYPE
  CLUS_1             7              99
  CLUS_2             1              53
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNGA4 MUTATED       11      3      4
  CNGA4 WILD-TYPE    112     92     67
D616V7, multiclass
        clus
vv       CNGA4 MUTATED CNGA4 WILD-TYPE
  CLUS_1            11             112
  CLUS_2             3              92
  CLUS_3             4              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNGA4 MUTATED       12      2      4
  CNGA4 WILD-TYPE    145     61     65
D616V8, multiclass
        clus
vv       CNGA4 MUTATED CNGA4 WILD-TYPE
  CLUS_1            12             145
  CLUS_2             2              61
  CLUS_3             4              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNGA4 MUTATED        3      3      5      2      2      0
  CNGA4 WILD-TYPE     30     16     54     37     14     45
D616V9, multiclass
        clus
vv       CNGA4 MUTATED CNGA4 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             3              16
  CLUS_3             5              54
  CLUS_4             2              37
  CLUS_5             2              14
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNGA4 MUTATED        4      0      4      3      1      3
  CNGA4 WILD-TYPE     43     39     31     29     22     32
D616V10, multiclass
        clus
vv       CNGA4 MUTATED CNGA4 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             0              39
  CLUS_3             4              31
  CLUS_4             3              29
  CLUS_5             1              22
  CLUS_6             3              32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(617) Variable = ACTG2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACTG2 MUTATED        1      8      0      0      0
  ACTG2 WILD-TYPE     78    118     27     43     12
D617V1, multiclass
        clus
vv       ACTG2 MUTATED ACTG2 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             8             118
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTG2 MUTATED        1      2      1      0
  ACTG2 WILD-TYPE     70     74     33     63
D617V2, multiclass
        clus
vv       ACTG2 MUTATED ACTG2 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             2              74
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACTG2 MUTATED        0      4      0      0      4
  ACTG2 WILD-TYPE     16     58     51     65     51
D617V3, multiclass
        clus
vv       ACTG2 MUTATED ACTG2 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             4              58
  CLUS_3             0              51
  CLUS_4             0              65
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTG2 MUTATED        2      4      2      0
  ACTG2 WILD-TYPE     96     40     48     57
D617V4, multiclass
        clus
vv       ACTG2 MUTATED ACTG2 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             4              40
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACTG2 MUTATED        3      1      2      1      0
  ACTG2 WILD-TYPE     59     58     38     36     59
D617V5, multiclass
        clus
vv       ACTG2 MUTATED ACTG2 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              58
  CLUS_3             2              38
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACTG2 MUTATED        1      0      6
  ACTG2 WILD-TYPE    105     54     91
D617V6, multiclass
        clus
vv       ACTG2 MUTATED ACTG2 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACTG2 MUTATED        8      0      1
  ACTG2 WILD-TYPE    115     95     70
D617V7, multiclass
        clus
vv       ACTG2 MUTATED ACTG2 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             0              95
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACTG2 MUTATED        7      0      2
  ACTG2 WILD-TYPE    150     63     67
D617V8, multiclass
        clus
vv       ACTG2 MUTATED ACTG2 WILD-TYPE
  CLUS_1             7             150
  CLUS_2             0              63
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACTG2 MUTATED        1      1      2      0      0      0
  ACTG2 WILD-TYPE     32     18     57     39     16     45
D617V9, multiclass
        clus
vv       ACTG2 MUTATED ACTG2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             2              57
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACTG2 MUTATED        1      0      2      0      0      1
  ACTG2 WILD-TYPE     46     39     33     32     23     34
D617V10, multiclass
        clus
vv       ACTG2 MUTATED ACTG2 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(618) Variable = FIGNL1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FIGNL1 MUTATED        0      6      2      1      0
  FIGNL1 WILD-TYPE     79    120     25     42     12
D618V1, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              6              120
  CLUS_3              2               25
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FIGNL1 MUTATED        0      5      1      1
  FIGNL1 WILD-TYPE     71     71     33     62
D618V2, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              5               71
  CLUS_3              1               33
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FIGNL1 MUTATED        0      4      0      1      3
  FIGNL1 WILD-TYPE     16     58     51     64     52
D618V3, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              4               58
  CLUS_3              0               51
  CLUS_4              1               64
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FIGNL1 MUTATED        0      6      1      1
  FIGNL1 WILD-TYPE     98     38     49     56
D618V4, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              6               38
  CLUS_3              1               49
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FIGNL1 MUTATED        5      1      0      2      0
  FIGNL1 WILD-TYPE     57     58     40     35     59
D618V5, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              5               57
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              2               35
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FIGNL1 MUTATED        1      1      6
  FIGNL1 WILD-TYPE    105     53     91
D618V6, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              1               53
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FIGNL1 MUTATED        7      1      1
  FIGNL1 WILD-TYPE    116     94     70
D618V7, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              7              116
  CLUS_2              1               94
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FIGNL1 MUTATED        8      1      0
  FIGNL1 WILD-TYPE    149     62     69
D618V8, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              8              149
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FIGNL1 MUTATED        0      1      2      3      0      1
  FIGNL1 WILD-TYPE     33     18     57     36     16     44
D618V9, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              3               36
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FIGNL1 MUTATED        4      1      2      0      0      0
  FIGNL1 WILD-TYPE     43     38     33     32     23     35
D618V10, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              4               43
  CLUS_2              1               38
  CLUS_3              2               33
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(619) Variable = LINGO4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LINGO4 MUTATED        2      5      0      2      0
  LINGO4 WILD-TYPE     77    121     27     41     12
D619V1, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              2               77
  CLUS_2              5              121
  CLUS_3              0               27
  CLUS_4              2               41
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LINGO4 MUTATED        0      6      1      2
  LINGO4 WILD-TYPE     71     70     33     61
D619V2, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              6               70
  CLUS_3              1               33
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LINGO4 MUTATED        0      2      2      3      1
  LINGO4 WILD-TYPE     16     60     49     62     54
D619V3, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              2               60
  CLUS_3              2               49
  CLUS_4              3               62
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LINGO4 MUTATED        1      2      2      3
  LINGO4 WILD-TYPE     97     42     48     54
D619V4, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              2               42
  CLUS_3              2               48
  CLUS_4              3               54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LINGO4 MUTATED        4      3      0      1      2
  LINGO4 WILD-TYPE     58     56     40     36     57
D619V5, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              3               56
  CLUS_3              0               40
  CLUS_4              1               36
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LINGO4 MUTATED        3      2      5
  LINGO4 WILD-TYPE    103     52     92
D619V6, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              2               52
  CLUS_3              5               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LINGO4 MUTATED        8      1      1
  LINGO4 WILD-TYPE    115     94     70
D619V7, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              8              115
  CLUS_2              1               94
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LINGO4 MUTATED        8      1      1
  LINGO4 WILD-TYPE    149     62     68
D619V8, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              8              149
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LINGO4 MUTATED        2      1      3      1      0      1
  LINGO4 WILD-TYPE     31     18     56     38     16     44
D619V9, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               18
  CLUS_3              3               56
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LINGO4 MUTATED        3      1      2      2      0      0
  LINGO4 WILD-TYPE     44     38     33     30     23     35
D619V10, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              1               38
  CLUS_3              2               33
  CLUS_4              2               30
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(620) Variable = PARP15 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PARP15 MUTATED        0      4      0      0      0
  PARP15 WILD-TYPE     79    122     27     43     12
D620V1, multiclass
        clus
vv       PARP15 MUTATED PARP15 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              4              122
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP15 MUTATED        0      2      1      1
  PARP15 WILD-TYPE     71     74     33     62
D620V2, multiclass
        clus
vv       PARP15 MUTATED PARP15 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              2               74
  CLUS_3              1               33
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PARP15 MUTATED        1      2      0      0      1
  PARP15 WILD-TYPE     15     60     51     65     54
D620V3, multiclass
        clus
vv       PARP15 MUTATED PARP15 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              2               60
  CLUS_3              0               51
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP15 MUTATED        1      1      2      0
  PARP15 WILD-TYPE     97     43     48     57
D620V4, multiclass
        clus
vv       PARP15 MUTATED PARP15 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              1               43
  CLUS_3              2               48
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PARP15 MUTATED        3      0      0      0      0
  PARP15 WILD-TYPE     59     59     40     37     59
D620V5, multiclass
        clus
vv       PARP15 MUTATED PARP15 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              0               37
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PARP15 MUTATED        1      0      2
  PARP15 WILD-TYPE    105     54     95
D620V6, multiclass
        clus
vv       PARP15 MUTATED PARP15 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               54
  CLUS_3              2               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PARP15 MUTATED        3      1      0
  PARP15 WILD-TYPE    120     94     71
D620V7, multiclass
        clus
vv       PARP15 MUTATED PARP15 WILD-TYPE
  CLUS_1              3              120
  CLUS_2              1               94
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PARP15 MUTATED        3      1      0
  PARP15 WILD-TYPE    154     62     69
D620V8, multiclass
        clus
vv       PARP15 MUTATED PARP15 WILD-TYPE
  CLUS_1              3              154
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PARP15 MUTATED        1      0      3      0      0      0
  PARP15 WILD-TYPE     32     19     56     39     16     45
D620V9, multiclass
        clus
vv       PARP15 MUTATED PARP15 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               19
  CLUS_3              3               56
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PARP15 MUTATED        0      0      3      1      0      0
  PARP15 WILD-TYPE     47     39     32     31     23     35
D620V10, multiclass
        clus
vv       PARP15 MUTATED PARP15 WILD-TYPE
  CLUS_1              0               47
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(621) Variable = GIMAP7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIMAP7 MUTATED        0      4      1      0      0
  GIMAP7 WILD-TYPE     79    122     26     43     12
D621V1, multiclass
        clus
vv       GIMAP7 MUTATED GIMAP7 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              4              122
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIMAP7 MUTATED        0      5      0      0
  GIMAP7 WILD-TYPE     71     71     34     63
D621V2, multiclass
        clus
vv       GIMAP7 MUTATED GIMAP7 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              5               71
  CLUS_3              0               34
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIMAP7 MUTATED        1      0      2      0      2
  GIMAP7 WILD-TYPE     15     62     49     65     53
D621V3, multiclass
        clus
vv       GIMAP7 MUTATED GIMAP7 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              0               62
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIMAP7 MUTATED        1      4      0      0
  GIMAP7 WILD-TYPE     97     40     50     57
D621V4, multiclass
        clus
vv       GIMAP7 MUTATED GIMAP7 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              4               40
  CLUS_3              0               50
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIMAP7 MUTATED        2      0      1      2      0
  GIMAP7 WILD-TYPE     60     59     39     35     59
D621V5, multiclass
        clus
vv       GIMAP7 MUTATED GIMAP7 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              2               35
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIMAP7 MUTATED        0      0      5
  GIMAP7 WILD-TYPE    106     54     92
D621V6, multiclass
        clus
vv       GIMAP7 MUTATED GIMAP7 WILD-TYPE
  CLUS_1              0              106
  CLUS_2              0               54
  CLUS_3              5               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIMAP7 MUTATED        4      0      1
  GIMAP7 WILD-TYPE    119     95     70
D621V7, multiclass
        clus
vv       GIMAP7 MUTATED GIMAP7 WILD-TYPE
  CLUS_1              4              119
  CLUS_2              0               95
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIMAP7 MUTATED        5      0      0
  GIMAP7 WILD-TYPE    152     63     69
D621V8, multiclass
        clus
vv       GIMAP7 MUTATED GIMAP7 WILD-TYPE
  CLUS_1              5              152
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GIMAP7 MUTATED        0      1      3      1      0      0
  GIMAP7 WILD-TYPE     33     18     56     38     16     45
D621V9, multiclass
        clus
vv       GIMAP7 MUTATED GIMAP7 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               18
  CLUS_3              3               56
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GIMAP7 MUTATED        1      0      3      1      0      0
  GIMAP7 WILD-TYPE     46     39     32     31     23     35
D621V10, multiclass
        clus
vv       GIMAP7 MUTATED GIMAP7 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(622) Variable = KIRREL MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIRREL MUTATED        3      6      0      5      0
  KIRREL WILD-TYPE     76    120     27     38     12
D622V1, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              3               76
  CLUS_2              6              120
  CLUS_3              0               27
  CLUS_4              5               38
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL MUTATED        2      8      0      2
  KIRREL WILD-TYPE     69     68     34     61
D622V2, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              2               69
  CLUS_2              8               68
  CLUS_3              0               34
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIRREL MUTATED        0      4      1      3      2
  KIRREL WILD-TYPE     16     58     50     62     53
D622V3, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              0               16
  CLUS_2              4               58
  CLUS_3              1               50
  CLUS_4              3               62
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL MUTATED        2      2      3      3
  KIRREL WILD-TYPE     96     42     47     54
D622V4, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              2               96
  CLUS_2              2               42
  CLUS_3              3               47
  CLUS_4              3               54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIRREL MUTATED        6      2      1      0      2
  KIRREL WILD-TYPE     56     57     39     37     57
D622V5, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              6               56
  CLUS_2              2               57
  CLUS_3              1               39
  CLUS_4              0               37
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIRREL MUTATED        4      1      6
  KIRREL WILD-TYPE    102     53     91
D622V6, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              4              102
  CLUS_2              1               53
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIRREL MUTATED        8      3      3
  KIRREL WILD-TYPE    115     92     68
D622V7, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              8              115
  CLUS_2              3               92
  CLUS_3              3               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIRREL MUTATED        9      2      3
  KIRREL WILD-TYPE    148     61     66
D622V8, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              9              148
  CLUS_2              2               61
  CLUS_3              3               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIRREL MUTATED        3      2      2      3      1      0
  KIRREL WILD-TYPE     30     17     57     36     15     45
D622V9, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              3               30
  CLUS_2              2               17
  CLUS_3              2               57
  CLUS_4              3               36
  CLUS_5              1               15
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIRREL MUTATED        6      0      1      3      0      1
  KIRREL WILD-TYPE     41     39     34     29     23     34
D622V10, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              6               41
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              3               29
  CLUS_5              0               23
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(623) Variable = PRKAR1B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRKAR1B MUTATED        0      5      0      0      0
  PRKAR1B WILD-TYPE     79    121     27     43     12
D623V1, multiclass
        clus
vv       PRKAR1B MUTATED PRKAR1B WILD-TYPE
  CLUS_1               0                79
  CLUS_2               5               121
  CLUS_3               0                27
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKAR1B MUTATED        0      2      2      0
  PRKAR1B WILD-TYPE     71     74     32     63
D623V2, multiclass
        clus
vv       PRKAR1B MUTATED PRKAR1B WILD-TYPE
  CLUS_1               0                71
  CLUS_2               2                74
  CLUS_3               2                32
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRKAR1B MUTATED        0      2      0      0      2
  PRKAR1B WILD-TYPE     16     60     51     65     53
D623V3, multiclass
        clus
vv       PRKAR1B MUTATED PRKAR1B WILD-TYPE
  CLUS_1               0                16
  CLUS_2               2                60
  CLUS_3               0                51
  CLUS_4               0                65
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKAR1B MUTATED        1      2      1      0
  PRKAR1B WILD-TYPE     97     42     49     57
D623V4, multiclass
        clus
vv       PRKAR1B MUTATED PRKAR1B WILD-TYPE
  CLUS_1               1                97
  CLUS_2               2                42
  CLUS_3               1                49
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRKAR1B MUTATED        4      0      1      0      0
  PRKAR1B WILD-TYPE     58     59     39     37     59
D623V5, multiclass
        clus
vv       PRKAR1B MUTATED PRKAR1B WILD-TYPE
  CLUS_1               4                58
  CLUS_2               0                59
  CLUS_3               1                39
  CLUS_4               0                37
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PRKAR1B MUTATED        1      0      4
  PRKAR1B WILD-TYPE    105     54     93
D623V6, multiclass
        clus
vv       PRKAR1B MUTATED PRKAR1B WILD-TYPE
  CLUS_1               1               105
  CLUS_2               0                54
  CLUS_3               4                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PRKAR1B MUTATED        4      0      1
  PRKAR1B WILD-TYPE    119     95     70
D623V7, multiclass
        clus
vv       PRKAR1B MUTATED PRKAR1B WILD-TYPE
  CLUS_1               4               119
  CLUS_2               0                95
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PRKAR1B MUTATED        4      0      1
  PRKAR1B WILD-TYPE    153     63     68
D623V8, multiclass
        clus
vv       PRKAR1B MUTATED PRKAR1B WILD-TYPE
  CLUS_1               4               153
  CLUS_2               0                63
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRKAR1B MUTATED        0      0      0      3      0      0
  PRKAR1B WILD-TYPE     33     19     59     36     16     45
D623V9, multiclass
        clus
vv       PRKAR1B MUTATED PRKAR1B WILD-TYPE
  CLUS_1               0                33
  CLUS_2               0                19
  CLUS_3               0                59
  CLUS_4               3                36
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRKAR1B MUTATED        1      0      0      1      1      0
  PRKAR1B WILD-TYPE     46     39     35     31     22     35
D623V10, multiclass
        clus
vv       PRKAR1B MUTATED PRKAR1B WILD-TYPE
  CLUS_1               1                46
  CLUS_2               0                39
  CLUS_3               0                35
  CLUS_4               1                31
  CLUS_5               1                22
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(624) Variable = CLCNKB MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLCNKB MUTATED        1      9      0      2      0
  CLCNKB WILD-TYPE     78    117     27     41     12
D624V1, multiclass
        clus
vv       CLCNKB MUTATED CLCNKB WILD-TYPE
  CLUS_1              1               78
  CLUS_2              9              117
  CLUS_3              0               27
  CLUS_4              2               41
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCNKB MUTATED        0      9      1      2
  CLCNKB WILD-TYPE     71     67     33     61
D624V2, multiclass
        clus
vv       CLCNKB MUTATED CLCNKB WILD-TYPE
  CLUS_1              0               71
  CLUS_2              9               67
  CLUS_3              1               33
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLCNKB MUTATED        2      4      2      0      2
  CLCNKB WILD-TYPE     14     58     49     65     53
D624V3, multiclass
        clus
vv       CLCNKB MUTATED CLCNKB WILD-TYPE
  CLUS_1              2               14
  CLUS_2              4               58
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCNKB MUTATED        2      5      2      1
  CLCNKB WILD-TYPE     96     39     48     56
D624V4, multiclass
        clus
vv       CLCNKB MUTATED CLCNKB WILD-TYPE
  CLUS_1              2               96
  CLUS_2              5               39
  CLUS_3              2               48
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLCNKB MUTATED        9      1      1      1      0
  CLCNKB WILD-TYPE     53     58     39     36     59
D624V5, multiclass
        clus
vv       CLCNKB MUTATED CLCNKB WILD-TYPE
  CLUS_1              9               53
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLCNKB MUTATED        1      2      9
  CLCNKB WILD-TYPE    105     52     88
D624V6, multiclass
        clus
vv       CLCNKB MUTATED CLCNKB WILD-TYPE
  CLUS_1              1              105
  CLUS_2              2               52
  CLUS_3              9               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLCNKB MUTATED        8      1      4
  CLCNKB WILD-TYPE    115     94     67
D624V7, multiclass
        clus
vv       CLCNKB MUTATED CLCNKB WILD-TYPE
  CLUS_1              8              115
  CLUS_2              1               94
  CLUS_3              4               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLCNKB MUTATED       10      2      1
  CLCNKB WILD-TYPE    147     61     68
D624V8, multiclass
        clus
vv       CLCNKB MUTATED CLCNKB WILD-TYPE
  CLUS_1             10              147
  CLUS_2              2               61
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CLCNKB MUTATED        1      3      3      4      0      0
  CLCNKB WILD-TYPE     32     16     56     35     16     45
D624V9, multiclass
        clus
vv       CLCNKB MUTATED CLCNKB WILD-TYPE
  CLUS_1              1               32
  CLUS_2              3               16
  CLUS_3              3               56
  CLUS_4              4               35
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CLCNKB MUTATED        4      1      3      2      1      0
  CLCNKB WILD-TYPE     43     38     32     30     22     35
D624V10, multiclass
        clus
vv       CLCNKB MUTATED CLCNKB WILD-TYPE
  CLUS_1              4               43
  CLUS_2              1               38
  CLUS_3              3               32
  CLUS_4              2               30
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(625) Variable = LSS MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LSS MUTATED        0      7      2      0      0
  LSS WILD-TYPE     79    119     25     43     12
D625V1, multiclass
        clus
vv       LSS MUTATED LSS WILD-TYPE
  CLUS_1           0            79
  CLUS_2           7           119
  CLUS_3           2            25
  CLUS_4           0            43
  CLUS_5           0            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LSS MUTATED        0      6      2      0
  LSS WILD-TYPE     71     70     32     63
D625V2, multiclass
        clus
vv       LSS MUTATED LSS WILD-TYPE
  CLUS_1           0            71
  CLUS_2           6            70
  CLUS_3           2            32
  CLUS_4           0            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LSS MUTATED        0      2      2      0      4
  LSS WILD-TYPE     16     60     49     65     51
D625V3, multiclass
        clus
vv       LSS MUTATED LSS WILD-TYPE
  CLUS_1           0            16
  CLUS_2           2            60
  CLUS_3           2            49
  CLUS_4           0            65
  CLUS_5           4            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LSS MUTATED        1      6      1      0
  LSS WILD-TYPE     97     38     49     57
D625V4, multiclass
        clus
vv       LSS MUTATED LSS WILD-TYPE
  CLUS_1           1            97
  CLUS_2           6            38
  CLUS_3           1            49
  CLUS_4           0            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LSS MUTATED        5      0      1      2      0
  LSS WILD-TYPE     57     59     39     35     59
D625V5, multiclass
        clus
vv       LSS MUTATED LSS WILD-TYPE
  CLUS_1           5            57
  CLUS_2           0            59
  CLUS_3           1            39
  CLUS_4           2            35
  CLUS_5           0            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  LSS MUTATED        1      0      7
  LSS WILD-TYPE    105     54     90
D625V6, multiclass
        clus
vv       LSS MUTATED LSS WILD-TYPE
  CLUS_1           1           105
  CLUS_2           0            54
  CLUS_3           7            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  LSS MUTATED        7      2      0
  LSS WILD-TYPE    116     93     71
D625V7, multiclass
        clus
vv       LSS MUTATED LSS WILD-TYPE
  CLUS_1           7           116
  CLUS_2           2            93
  CLUS_3           0            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  LSS MUTATED        8      1      0
  LSS WILD-TYPE    149     62     69
D625V8, multiclass
        clus
vv       LSS MUTATED LSS WILD-TYPE
  CLUS_1           8           149
  CLUS_2           1            62
  CLUS_3           0            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LSS MUTATED        0      2      3      2      0      1
  LSS WILD-TYPE     33     17     56     37     16     44
D625V9, multiclass
        clus
vv       LSS MUTATED LSS WILD-TYPE
  CLUS_1           0            33
  CLUS_2           2            17
  CLUS_3           3            56
  CLUS_4           2            37
  CLUS_5           0            16
  CLUS_6           1            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LSS MUTATED        2      1      3      1      1      0
  LSS WILD-TYPE     45     38     32     31     22     35
D625V10, multiclass
        clus
vv       LSS MUTATED LSS WILD-TYPE
  CLUS_1           2            45
  CLUS_2           1            38
  CLUS_3           3            32
  CLUS_4           1            31
  CLUS_5           1            22
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(626) Variable = KIF2B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF2B MUTATED        7     12      2      5      1
  KIF2B WILD-TYPE     72    114     25     38     11
D626V1, multiclass
        clus
vv       KIF2B MUTATED KIF2B WILD-TYPE
  CLUS_1             7              72
  CLUS_2            12             114
  CLUS_3             2              25
  CLUS_4             5              38
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF2B MUTATED        8     10      2      5
  KIF2B WILD-TYPE     63     66     32     58
D626V2, multiclass
        clus
vv       KIF2B MUTATED KIF2B WILD-TYPE
  CLUS_1             8              63
  CLUS_2            10              66
  CLUS_3             2              32
  CLUS_4             5              58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF2B MUTATED        2      7      6      3      4
  KIF2B WILD-TYPE     14     55     45     62     51
D626V3, multiclass
        clus
vv       KIF2B MUTATED KIF2B WILD-TYPE
  CLUS_1             2              14
  CLUS_2             7              55
  CLUS_3             6              45
  CLUS_4             3              62
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF2B MUTATED        9      5      6      2
  KIF2B WILD-TYPE     89     39     44     55
D626V4, multiclass
        clus
vv       KIF2B MUTATED KIF2B WILD-TYPE
  CLUS_1             9              89
  CLUS_2             5              39
  CLUS_3             6              44
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF2B MUTATED        6      2      4      6      7
  KIF2B WILD-TYPE     56     57     36     31     52
D626V5, multiclass
        clus
vv       KIF2B MUTATED KIF2B WILD-TYPE
  CLUS_1             6              56
  CLUS_2             2              57
  CLUS_3             4              36
  CLUS_4             6              31
  CLUS_5             7              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF2B MUTATED        8      5     12
  KIF2B WILD-TYPE     98     49     85
D626V6, multiclass
        clus
vv       KIF2B MUTATED KIF2B WILD-TYPE
  CLUS_1             8              98
  CLUS_2             5              49
  CLUS_3            12              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF2B MUTATED       14      6      7
  KIF2B WILD-TYPE    109     89     64
D626V7, multiclass
        clus
vv       KIF2B MUTATED KIF2B WILD-TYPE
  CLUS_1            14             109
  CLUS_2             6              89
  CLUS_3             7              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF2B MUTATED       19      2      6
  KIF2B WILD-TYPE    138     61     63
D626V8, multiclass
        clus
vv       KIF2B MUTATED KIF2B WILD-TYPE
  CLUS_1            19             138
  CLUS_2             2              61
  CLUS_3             6              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIF2B MUTATED        3      3      5      7      0      3
  KIF2B WILD-TYPE     30     16     54     32     16     42
D626V9, multiclass
        clus
vv       KIF2B MUTATED KIF2B WILD-TYPE
  CLUS_1             3              30
  CLUS_2             3              16
  CLUS_3             5              54
  CLUS_4             7              32
  CLUS_5             0              16
  CLUS_6             3              42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIF2B MUTATED        6      3      3      4      2      3
  KIF2B WILD-TYPE     41     36     32     28     21     32
D626V10, multiclass
        clus
vv       KIF2B MUTATED KIF2B WILD-TYPE
  CLUS_1             6              41
  CLUS_2             3              36
  CLUS_3             3              32
  CLUS_4             4              28
  CLUS_5             2              21
  CLUS_6             3              32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(627) Variable = LCE1A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LCE1A MUTATED        1      0      0      2      0
  LCE1A WILD-TYPE     78    126     27     41     12
D627V1, multiclass
        clus
vv       LCE1A MUTATED LCE1A WILD-TYPE
  CLUS_1             1              78
  CLUS_2             0             126
  CLUS_3             0              27
  CLUS_4             2              41
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LCE1A MUTATED        2      1      0      0
  LCE1A WILD-TYPE     69     75     34     63
D627V2, multiclass
        clus
vv       LCE1A MUTATED LCE1A WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              75
  CLUS_3             0              34
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LCE1A MUTATED        0      0      0      2      1
  LCE1A WILD-TYPE     16     62     51     63     54
D627V3, multiclass
        clus
vv       LCE1A MUTATED LCE1A WILD-TYPE
  CLUS_1             0              16
  CLUS_2             0              62
  CLUS_3             0              51
  CLUS_4             2              63
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LCE1A MUTATED        1      0      2      0
  LCE1A WILD-TYPE     97     44     48     57
D627V4, multiclass
        clus
vv       LCE1A MUTATED LCE1A WILD-TYPE
  CLUS_1             1              97
  CLUS_2             0              44
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LCE1A MUTATED        0      1      1      0      1
  LCE1A WILD-TYPE     62     58     39     37     58
D627V5, multiclass
        clus
vv       LCE1A MUTATED LCE1A WILD-TYPE
  CLUS_1             0              62
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             0              37
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LCE1A MUTATED        1      1      1
  LCE1A WILD-TYPE    105     53     96
D627V6, multiclass
        clus
vv       LCE1A MUTATED LCE1A WILD-TYPE
  CLUS_1             1             105
  CLUS_2             1              53
  CLUS_3             1              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LCE1A MUTATED        0      1      2
  LCE1A WILD-TYPE    123     94     69
D627V7, multiclass
        clus
vv       LCE1A MUTATED LCE1A WILD-TYPE
  CLUS_1             0             123
  CLUS_2             1              94
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LCE1A MUTATED        0      0      3
  LCE1A WILD-TYPE    157     63     66
D627V8, multiclass
        clus
vv       LCE1A MUTATED LCE1A WILD-TYPE
  CLUS_1             0             157
  CLUS_2             0              63
  CLUS_3             3              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LCE1A MUTATED        2      0      0      0      0      1
  LCE1A WILD-TYPE     31     19     59     39     16     44
D627V9, multiclass
        clus
vv       LCE1A MUTATED LCE1A WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              19
  CLUS_3             0              59
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LCE1A MUTATED        1      1      0      0      0      1
  LCE1A WILD-TYPE     46     38     35     32     23     34
D627V10, multiclass
        clus
vv       LCE1A MUTATED LCE1A WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              38
  CLUS_3             0              35
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(628) Variable = PRSS48 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRSS48 MUTATED        0      3      1      0      2
  PRSS48 WILD-TYPE     79    123     26     43     10
D628V1, multiclass
        clus
vv       PRSS48 MUTATED PRSS48 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              3              123
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              2               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRSS48 MUTATED        0      4      0      1
  PRSS48 WILD-TYPE     71     72     34     62
D628V2, multiclass
        clus
vv       PRSS48 MUTATED PRSS48 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              4               72
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRSS48 MUTATED        1      3      0      0      1
  PRSS48 WILD-TYPE     15     59     51     65     54
D628V3, multiclass
        clus
vv       PRSS48 MUTATED PRSS48 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              3               59
  CLUS_3              0               51
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRSS48 MUTATED        2      1      2      0
  PRSS48 WILD-TYPE     96     43     48     57
D628V4, multiclass
        clus
vv       PRSS48 MUTATED PRSS48 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              1               43
  CLUS_3              2               48
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRSS48 MUTATED        3      0      1      1      0
  PRSS48 WILD-TYPE     59     59     39     36     59
D628V5, multiclass
        clus
vv       PRSS48 MUTATED PRSS48 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRSS48 MUTATED        1      0      4
  PRSS48 WILD-TYPE    105     54     93
D628V6, multiclass
        clus
vv       PRSS48 MUTATED PRSS48 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               54
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRSS48 MUTATED        4      1      1
  PRSS48 WILD-TYPE    119     94     70
D628V7, multiclass
        clus
vv       PRSS48 MUTATED PRSS48 WILD-TYPE
  CLUS_1              4              119
  CLUS_2              1               94
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRSS48 MUTATED        6      0      0
  PRSS48 WILD-TYPE    151     63     69
D628V8, multiclass
        clus
vv       PRSS48 MUTATED PRSS48 WILD-TYPE
  CLUS_1              6              151
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRSS48 MUTATED        0      1      2      1      0      0
  PRSS48 WILD-TYPE     33     18     57     38     16     45
D628V9, multiclass
        clus
vv       PRSS48 MUTATED PRSS48 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRSS48 MUTATED        1      0      2      0      1      0
  PRSS48 WILD-TYPE     46     39     33     32     22     35
D628V10, multiclass
        clus
vv       PRSS48 MUTATED PRSS48 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              0               32
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(629) Variable = FGF13 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGF13 MUTATED        0      9      0      0      1
  FGF13 WILD-TYPE     79    117     27     43     11
D629V1, multiclass
        clus
vv       FGF13 MUTATED FGF13 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             9             117
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGF13 MUTATED        0      3      4      1
  FGF13 WILD-TYPE     71     73     30     62
D629V2, multiclass
        clus
vv       FGF13 MUTATED FGF13 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             3              73
  CLUS_3             4              30
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGF13 MUTATED        0      4      1      2      1
  FGF13 WILD-TYPE     16     58     50     63     54
D629V3, multiclass
        clus
vv       FGF13 MUTATED FGF13 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             4              58
  CLUS_3             1              50
  CLUS_4             2              63
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGF13 MUTATED        2      2      3      1
  FGF13 WILD-TYPE     96     42     47     56
D629V4, multiclass
        clus
vv       FGF13 MUTATED FGF13 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             2              42
  CLUS_3             3              47
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGF13 MUTATED        6      0      1      3      0
  FGF13 WILD-TYPE     56     59     39     34     59
D629V5, multiclass
        clus
vv       FGF13 MUTATED FGF13 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGF13 MUTATED        4      2      4
  FGF13 WILD-TYPE    102     52     93
D629V6, multiclass
        clus
vv       FGF13 MUTATED FGF13 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             2              52
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGF13 MUTATED        8      1      1
  FGF13 WILD-TYPE    115     94     70
D629V7, multiclass
        clus
vv       FGF13 MUTATED FGF13 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGF13 MUTATED        9      1      0
  FGF13 WILD-TYPE    148     62     69
D629V8, multiclass
        clus
vv       FGF13 MUTATED FGF13 WILD-TYPE
  CLUS_1             9             148
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FGF13 MUTATED        0      2      3      2      1      0
  FGF13 WILD-TYPE     33     17     56     37     15     45
D629V9, multiclass
        clus
vv       FGF13 MUTATED FGF13 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              17
  CLUS_3             3              56
  CLUS_4             2              37
  CLUS_5             1              15
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FGF13 MUTATED        1      0      3      1      3      0
  FGF13 WILD-TYPE     46     39     32     31     20     35
D629V10, multiclass
        clus
vv       FGF13 MUTATED FGF13 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              39
  CLUS_3             3              32
  CLUS_4             1              31
  CLUS_5             3              20
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(630) Variable = GPRASP1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPRASP1 MUTATED        0     10      1      3      1
  GPRASP1 WILD-TYPE     79    116     26     40     11
D630V1, multiclass
        clus
vv       GPRASP1 MUTATED GPRASP1 WILD-TYPE
  CLUS_1               0                79
  CLUS_2              10               116
  CLUS_3               1                26
  CLUS_4               3                40
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPRASP1 MUTATED        0      9      1      1
  GPRASP1 WILD-TYPE     71     67     33     62
D630V2, multiclass
        clus
vv       GPRASP1 MUTATED GPRASP1 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               9                67
  CLUS_3               1                33
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPRASP1 MUTATED        1      7      0      1      4
  GPRASP1 WILD-TYPE     15     55     51     64     51
D630V3, multiclass
        clus
vv       GPRASP1 MUTATED GPRASP1 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               7                55
  CLUS_3               0                51
  CLUS_4               1                64
  CLUS_5               4                51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPRASP1 MUTATED        3      4      5      1
  GPRASP1 WILD-TYPE     95     40     45     56
D630V4, multiclass
        clus
vv       GPRASP1 MUTATED GPRASP1 WILD-TYPE
  CLUS_1               3                95
  CLUS_2               4                40
  CLUS_3               5                45
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPRASP1 MUTATED        7      2      3      1      0
  GPRASP1 WILD-TYPE     55     57     37     36     59
D630V5, multiclass
        clus
vv       GPRASP1 MUTATED GPRASP1 WILD-TYPE
  CLUS_1               7                55
  CLUS_2               2                57
  CLUS_3               3                37
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GPRASP1 MUTATED        4      1      8
  GPRASP1 WILD-TYPE    102     53     89
D630V6, multiclass
        clus
vv       GPRASP1 MUTATED GPRASP1 WILD-TYPE
  CLUS_1               4               102
  CLUS_2               1                53
  CLUS_3               8                89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GPRASP1 MUTATED       12      1      2
  GPRASP1 WILD-TYPE    111     94     69
D630V7, multiclass
        clus
vv       GPRASP1 MUTATED GPRASP1 WILD-TYPE
  CLUS_1              12               111
  CLUS_2               1                94
  CLUS_3               2                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GPRASP1 MUTATED       13      2      0
  GPRASP1 WILD-TYPE    144     61     69
D630V8, multiclass
        clus
vv       GPRASP1 MUTATED GPRASP1 WILD-TYPE
  CLUS_1              13               144
  CLUS_2               2                61
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPRASP1 MUTATED        2      1      4      3      0      0
  GPRASP1 WILD-TYPE     31     18     55     36     16     45
D630V9, multiclass
        clus
vv       GPRASP1 MUTATED GPRASP1 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               1                18
  CLUS_3               4                55
  CLUS_4               3                36
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPRASP1 MUTATED        6      0      3      1      0      0
  GPRASP1 WILD-TYPE     41     39     32     31     23     35
D630V10, multiclass
        clus
vv       GPRASP1 MUTATED GPRASP1 WILD-TYPE
  CLUS_1               6                41
  CLUS_2               0                39
  CLUS_3               3                32
  CLUS_4               1                31
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(631) Variable = RERE MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RERE MUTATED        0     15      2      1      2
  RERE WILD-TYPE     79    111     25     42     10
D631V1, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            0             79
  CLUS_2           15            111
  CLUS_3            2             25
  CLUS_4            1             42
  CLUS_5            2             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RERE MUTATED        0     11      1      1
  RERE WILD-TYPE     71     65     33     62
D631V2, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            0             71
  CLUS_2           11             65
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RERE MUTATED        1      7      5      0      5
  RERE WILD-TYPE     15     55     46     65     50
D631V3, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            1             15
  CLUS_2            7             55
  CLUS_3            5             46
  CLUS_4            0             65
  CLUS_5            5             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RERE MUTATED        5      9      4      0
  RERE WILD-TYPE     93     35     46     57
D631V4, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            5             93
  CLUS_2            9             35
  CLUS_3            4             46
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RERE MUTATED       13      0      4      3      0
  RERE WILD-TYPE     49     59     36     34     59
D631V5, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1           13             49
  CLUS_2            0             59
  CLUS_3            4             36
  CLUS_4            3             34
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RERE MUTATED        3      0     17
  RERE WILD-TYPE    103     54     80
D631V6, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            3            103
  CLUS_2            0             54
  CLUS_3           17             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RERE MUTATED       17      1      2
  RERE WILD-TYPE    106     94     69
D631V7, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1           17            106
  CLUS_2            1             94
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RERE MUTATED       18      1      1
  RERE WILD-TYPE    139     62     68
D631V8, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1           18            139
  CLUS_2            1             62
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RERE MUTATED        1      2      5      4      0      0
  RERE WILD-TYPE     32     17     54     35     16     45
D631V9, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            1             32
  CLUS_2            2             17
  CLUS_3            5             54
  CLUS_4            4             35
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RERE MUTATED        6      0      4      1      1      0
  RERE WILD-TYPE     41     39     31     31     22     35
D631V10, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            6             41
  CLUS_2            0             39
  CLUS_3            4             31
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(632) Variable = PPP1R13B MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R13B MUTATED        1      7      2      0      0
  PPP1R13B WILD-TYPE     78    119     25     43     12
D632V1, multiclass
        clus
vv       PPP1R13B MUTATED PPP1R13B WILD-TYPE
  CLUS_1                1                 78
  CLUS_2                7                119
  CLUS_3                2                 25
  CLUS_4                0                 43
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R13B MUTATED        0      2      1      3
  PPP1R13B WILD-TYPE     71     74     33     60
D632V2, multiclass
        clus
vv       PPP1R13B MUTATED PPP1R13B WILD-TYPE
  CLUS_1                0                 71
  CLUS_2                2                 74
  CLUS_3                1                 33
  CLUS_4                3                 60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R13B MUTATED        3      3      1      1      1
  PPP1R13B WILD-TYPE     13     59     50     64     54
D632V3, multiclass
        clus
vv       PPP1R13B MUTATED PPP1R13B WILD-TYPE
  CLUS_1                3                 13
  CLUS_2                3                 59
  CLUS_3                1                 50
  CLUS_4                1                 64
  CLUS_5                1                 54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R13B MUTATED        5      0      3      1
  PPP1R13B WILD-TYPE     93     44     47     56
D632V4, multiclass
        clus
vv       PPP1R13B MUTATED PPP1R13B WILD-TYPE
  CLUS_1                5                 93
  CLUS_2                0                 44
  CLUS_3                3                 47
  CLUS_4                1                 56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R13B MUTATED        3      2      3      1      1
  PPP1R13B WILD-TYPE     59     57     37     36     58
D632V5, multiclass
        clus
vv       PPP1R13B MUTATED PPP1R13B WILD-TYPE
  CLUS_1                3                 59
  CLUS_2                2                 57
  CLUS_3                3                 37
  CLUS_4                1                 36
  CLUS_5                1                 58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPP1R13B MUTATED        5      1      4
  PPP1R13B WILD-TYPE    101     53     93
D632V6, multiclass
        clus
vv       PPP1R13B MUTATED PPP1R13B WILD-TYPE
  CLUS_1                5                101
  CLUS_2                1                 53
  CLUS_3                4                 93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPP1R13B MUTATED        8      1      1
  PPP1R13B WILD-TYPE    115     94     70
D632V7, multiclass
        clus
vv       PPP1R13B MUTATED PPP1R13B WILD-TYPE
  CLUS_1                8                115
  CLUS_2                1                 94
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPP1R13B MUTATED        7      1      2
  PPP1R13B WILD-TYPE    150     62     67
D632V8, multiclass
        clus
vv       PPP1R13B MUTATED PPP1R13B WILD-TYPE
  CLUS_1                7                150
  CLUS_2                1                 62
  CLUS_3                2                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPP1R13B MUTATED        0      0      3      1      1      0
  PPP1R13B WILD-TYPE     33     19     56     38     15     45
D632V9, multiclass
        clus
vv       PPP1R13B MUTATED PPP1R13B WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                0                 19
  CLUS_3                3                 56
  CLUS_4                1                 38
  CLUS_5                1                 15
  CLUS_6                0                 45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPP1R13B MUTATED        0      0      3      1      0      1
  PPP1R13B WILD-TYPE     47     39     32     31     23     34
D632V10, multiclass
        clus
vv       PPP1R13B MUTATED PPP1R13B WILD-TYPE
  CLUS_1                0                 47
  CLUS_2                0                 39
  CLUS_3                3                 32
  CLUS_4                1                 31
  CLUS_5                0                 23
  CLUS_6                1                 34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(633) Variable = LRP12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRP12 MUTATED        3     17      2      1      0
  LRP12 WILD-TYPE     76    109     25     42     12
D633V1, multiclass
        clus
vv       LRP12 MUTATED LRP12 WILD-TYPE
  CLUS_1             3              76
  CLUS_2            17             109
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP12 MUTATED        4     10      3      2
  LRP12 WILD-TYPE     67     66     31     61
D633V2, multiclass
        clus
vv       LRP12 MUTATED LRP12 WILD-TYPE
  CLUS_1             4              67
  CLUS_2            10              66
  CLUS_3             3              31
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRP12 MUTATED        3      6      5      1      5
  LRP12 WILD-TYPE     13     56     46     64     50
D633V3, multiclass
        clus
vv       LRP12 MUTATED LRP12 WILD-TYPE
  CLUS_1             3              13
  CLUS_2             6              56
  CLUS_3             5              46
  CLUS_4             1              64
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP12 MUTATED        6      9      3      2
  LRP12 WILD-TYPE     92     35     47     55
D633V4, multiclass
        clus
vv       LRP12 MUTATED LRP12 WILD-TYPE
  CLUS_1             6              92
  CLUS_2             9              35
  CLUS_3             3              47
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRP12 MUTATED        7      2      2      6      1
  LRP12 WILD-TYPE     55     57     38     31     58
D633V5, multiclass
        clus
vv       LRP12 MUTATED LRP12 WILD-TYPE
  CLUS_1             7              55
  CLUS_2             2              57
  CLUS_3             2              38
  CLUS_4             6              31
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRP12 MUTATED        4      2     12
  LRP12 WILD-TYPE    102     52     85
D633V6, multiclass
        clus
vv       LRP12 MUTATED LRP12 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             2              52
  CLUS_3            12              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRP12 MUTATED       19      0      4
  LRP12 WILD-TYPE    104     95     67
D633V7, multiclass
        clus
vv       LRP12 MUTATED LRP12 WILD-TYPE
  CLUS_1            19             104
  CLUS_2             0              95
  CLUS_3             4              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRP12 MUTATED       18      0      5
  LRP12 WILD-TYPE    139     63     64
D633V8, multiclass
        clus
vv       LRP12 MUTATED LRP12 WILD-TYPE
  CLUS_1            18             139
  CLUS_2             0              63
  CLUS_3             5              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRP12 MUTATED        4      4      6      3      0      0
  LRP12 WILD-TYPE     29     15     53     36     16     45
D633V9, multiclass
        clus
vv       LRP12 MUTATED LRP12 WILD-TYPE
  CLUS_1             4              29
  CLUS_2             4              15
  CLUS_3             6              53
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRP12 MUTATED       10      1      2      3      1      0
  LRP12 WILD-TYPE     37     38     33     29     22     35
D633V10, multiclass
        clus
vv       LRP12 MUTATED LRP12 WILD-TYPE
  CLUS_1            10              37
  CLUS_2             1              38
  CLUS_3             2              33
  CLUS_4             3              29
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(634) Variable = ATP8B1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP8B1 MUTATED        1     10      3      0      1
  ATP8B1 WILD-TYPE     78    116     24     43     11
D634V1, multiclass
        clus
vv       ATP8B1 MUTATED ATP8B1 WILD-TYPE
  CLUS_1              1               78
  CLUS_2             10              116
  CLUS_3              3               24
  CLUS_4              0               43
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP8B1 MUTATED        1      8      1      0
  ATP8B1 WILD-TYPE     70     68     33     63
D634V2, multiclass
        clus
vv       ATP8B1 MUTATED ATP8B1 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              8               68
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP8B1 MUTATED        1      6      5      0      3
  ATP8B1 WILD-TYPE     15     56     46     65     52
D634V3, multiclass
        clus
vv       ATP8B1 MUTATED ATP8B1 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              6               56
  CLUS_3              5               46
  CLUS_4              0               65
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP8B1 MUTATED        3      8      4      0
  ATP8B1 WILD-TYPE     95     36     46     57
D634V4, multiclass
        clus
vv       ATP8B1 MUTATED ATP8B1 WILD-TYPE
  CLUS_1              3               95
  CLUS_2              8               36
  CLUS_3              4               46
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP8B1 MUTATED        4      1      3      5      1
  ATP8B1 WILD-TYPE     58     58     37     32     58
D634V5, multiclass
        clus
vv       ATP8B1 MUTATED ATP8B1 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              1               58
  CLUS_3              3               37
  CLUS_4              5               32
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP8B1 MUTATED        3      0     11
  ATP8B1 WILD-TYPE    103     54     86
D634V6, multiclass
        clus
vv       ATP8B1 MUTATED ATP8B1 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              0               54
  CLUS_3             11               86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP8B1 MUTATED       13      1      1
  ATP8B1 WILD-TYPE    110     94     70
D634V7, multiclass
        clus
vv       ATP8B1 MUTATED ATP8B1 WILD-TYPE
  CLUS_1             13              110
  CLUS_2              1               94
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP8B1 MUTATED       13      1      1
  ATP8B1 WILD-TYPE    144     62     68
D634V8, multiclass
        clus
vv       ATP8B1 MUTATED ATP8B1 WILD-TYPE
  CLUS_1             13              144
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATP8B1 MUTATED        2      2      7      0      0      0
  ATP8B1 WILD-TYPE     31     17     52     39     16     45
D634V9, multiclass
        clus
vv       ATP8B1 MUTATED ATP8B1 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              2               17
  CLUS_3              7               52
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATP8B1 MUTATED        5      0      4      1      0      1
  ATP8B1 WILD-TYPE     42     39     31     31     23     34
D634V10, multiclass
        clus
vv       ATP8B1 MUTATED ATP8B1 WILD-TYPE
  CLUS_1              5               42
  CLUS_2              0               39
  CLUS_3              4               31
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(635) Variable = NAA35 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAA35 MUTATED        0      3      0      1      0
  NAA35 WILD-TYPE     79    123     27     42     12
D635V1, multiclass
        clus
vv       NAA35 MUTATED NAA35 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             3             123
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA35 MUTATED        0      3      0      0
  NAA35 WILD-TYPE     71     73     34     63
D635V2, multiclass
        clus
vv       NAA35 MUTATED NAA35 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             3              73
  CLUS_3             0              34
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAA35 MUTATED        0      2      1      0      1
  NAA35 WILD-TYPE     16     60     50     65     54
D635V3, multiclass
        clus
vv       NAA35 MUTATED NAA35 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA35 MUTATED        0      3      1      0
  NAA35 WILD-TYPE     98     41     49     57
D635V4, multiclass
        clus
vv       NAA35 MUTATED NAA35 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             3              41
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAA35 MUTATED        3      0      1      0      0
  NAA35 WILD-TYPE     59     59     39     37     59
D635V5, multiclass
        clus
vv       NAA35 MUTATED NAA35 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA35 MUTATED        1      0      3
  NAA35 WILD-TYPE    105     54     94
D635V6, multiclass
        clus
vv       NAA35 MUTATED NAA35 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA35 MUTATED        3      1      0
  NAA35 WILD-TYPE    120     94     71
D635V7, multiclass
        clus
vv       NAA35 MUTATED NAA35 WILD-TYPE
  CLUS_1             3             120
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA35 MUTATED        4      0      0
  NAA35 WILD-TYPE    153     63     69
D635V8, multiclass
        clus
vv       NAA35 MUTATED NAA35 WILD-TYPE
  CLUS_1             4             153
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NAA35 MUTATED        0      0      1      2      0      0
  NAA35 WILD-TYPE     33     19     58     37     16     45
D635V9, multiclass
        clus
vv       NAA35 MUTATED NAA35 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              19
  CLUS_3             1              58
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NAA35 MUTATED        1      0      1      0      1      0
  NAA35 WILD-TYPE     46     39     34     32     22     35
D635V10, multiclass
        clus
vv       NAA35 MUTATED NAA35 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(636) Variable = WWC1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WWC1 MUTATED        2     10      1      1      0
  WWC1 WILD-TYPE     77    116     26     42     12
D636V1, multiclass
        clus
vv       WWC1 MUTATED WWC1 WILD-TYPE
  CLUS_1            2             77
  CLUS_2           10            116
  CLUS_3            1             26
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WWC1 MUTATED        2      5      3      1
  WWC1 WILD-TYPE     69     71     31     62
D636V2, multiclass
        clus
vv       WWC1 MUTATED WWC1 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            5             71
  CLUS_3            3             31
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WWC1 MUTATED        1      2      4      2      4
  WWC1 WILD-TYPE     15     60     47     63     51
D636V3, multiclass
        clus
vv       WWC1 MUTATED WWC1 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            2             60
  CLUS_3            4             47
  CLUS_4            2             63
  CLUS_5            4             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WWC1 MUTATED        4      4      1      4
  WWC1 WILD-TYPE     94     40     49     53
D636V4, multiclass
        clus
vv       WWC1 MUTATED WWC1 WILD-TYPE
  CLUS_1            4             94
  CLUS_2            4             40
  CLUS_3            1             49
  CLUS_4            4             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WWC1 MUTATED        6      4      0      1      2
  WWC1 WILD-TYPE     56     55     40     36     57
D636V5, multiclass
        clus
vv       WWC1 MUTATED WWC1 WILD-TYPE
  CLUS_1            6             56
  CLUS_2            4             55
  CLUS_3            0             40
  CLUS_4            1             36
  CLUS_5            2             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WWC1 MUTATED        5      2      6
  WWC1 WILD-TYPE    101     52     91
D636V6, multiclass
        clus
vv       WWC1 MUTATED WWC1 WILD-TYPE
  CLUS_1            5            101
  CLUS_2            2             52
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WWC1 MUTATED        8      3      3
  WWC1 WILD-TYPE    115     92     68
D636V7, multiclass
        clus
vv       WWC1 MUTATED WWC1 WILD-TYPE
  CLUS_1            8            115
  CLUS_2            3             92
  CLUS_3            3             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WWC1 MUTATED       10      2      2
  WWC1 WILD-TYPE    147     61     67
D636V8, multiclass
        clus
vv       WWC1 MUTATED WWC1 WILD-TYPE
  CLUS_1           10            147
  CLUS_2            2             61
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WWC1 MUTATED        1      1      6      2      0      0
  WWC1 WILD-TYPE     32     18     53     37     16     45
D636V9, multiclass
        clus
vv       WWC1 MUTATED WWC1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            6             53
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WWC1 MUTATED        3      0      4      2      1      0
  WWC1 WILD-TYPE     44     39     31     30     22     35
D636V10, multiclass
        clus
vv       WWC1 MUTATED WWC1 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            0             39
  CLUS_3            4             31
  CLUS_4            2             30
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(637) Variable = DNAH7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAH7 MUTATED        9     22      4      6      1
  DNAH7 WILD-TYPE     70    104     23     37     11
D637V1, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             9              70
  CLUS_2            22             104
  CLUS_3             4              23
  CLUS_4             6              37
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH7 MUTATED        9     16      4      6
  DNAH7 WILD-TYPE     62     60     30     57
D637V2, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             9              62
  CLUS_2            16              60
  CLUS_3             4              30
  CLUS_4             6              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAH7 MUTATED        5     10      7      7      9
  DNAH7 WILD-TYPE     11     52     44     58     46
D637V3, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             5              11
  CLUS_2            10              52
  CLUS_3             7              44
  CLUS_4             7              58
  CLUS_5             9              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH7 MUTATED       16     11      6      5
  DNAH7 WILD-TYPE     82     33     44     52
D637V4, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1            16              82
  CLUS_2            11              33
  CLUS_3             6              44
  CLUS_4             5              52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAH7 MUTATED       16      4      4      7      7
  DNAH7 WILD-TYPE     46     55     36     30     52
D637V5, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1            16              46
  CLUS_2             4              55
  CLUS_3             4              36
  CLUS_4             7              30
  CLUS_5             7              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH7 MUTATED       11      4     23
  DNAH7 WILD-TYPE     95     50     74
D637V6, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1            11              95
  CLUS_2             4              50
  CLUS_3            23              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH7 MUTATED       29      4      9
  DNAH7 WILD-TYPE     94     91     62
D637V7, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1            29              94
  CLUS_2             4              91
  CLUS_3             9              62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH7 MUTATED       32      3      7
  DNAH7 WILD-TYPE    125     60     62
D637V8, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1            32             125
  CLUS_2             3              60
  CLUS_3             7              62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DNAH7 MUTATED        5      4      9      8      3      2
  DNAH7 WILD-TYPE     28     15     50     31     13     43
D637V9, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             5              28
  CLUS_2             4              15
  CLUS_3             9              50
  CLUS_4             8              31
  CLUS_5             3              13
  CLUS_6             2              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DNAH7 MUTATED       11      1      6     10      1      2
  DNAH7 WILD-TYPE     36     38     29     22     22     33
D637V10, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1            11              36
  CLUS_2             1              38
  CLUS_3             6              29
  CLUS_4            10              22
  CLUS_5             1              22
  CLUS_6             2              33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(638) Variable = ELK3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELK3 MUTATED        0      3      1      1      0
  ELK3 WILD-TYPE     79    123     26     42     12
D638V1, multiclass
        clus
vv       ELK3 MUTATED ELK3 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            3            123
  CLUS_3            1             26
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELK3 MUTATED        0      4      1      1
  ELK3 WILD-TYPE     71     72     33     62
D638V2, multiclass
        clus
vv       ELK3 MUTATED ELK3 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            4             72
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELK3 MUTATED        0      3      1      0      1
  ELK3 WILD-TYPE     16     59     50     65     54
D638V3, multiclass
        clus
vv       ELK3 MUTATED ELK3 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            3             59
  CLUS_3            1             50
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELK3 MUTATED        0      3      2      0
  ELK3 WILD-TYPE     98     41     48     57
D638V4, multiclass
        clus
vv       ELK3 MUTATED ELK3 WILD-TYPE
  CLUS_1            0             98
  CLUS_2            3             41
  CLUS_3            2             48
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELK3 MUTATED        5      0      0      1      0
  ELK3 WILD-TYPE     57     59     40     36     59
D638V5, multiclass
        clus
vv       ELK3 MUTATED ELK3 WILD-TYPE
  CLUS_1            5             57
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELK3 MUTATED        0      0      6
  ELK3 WILD-TYPE    106     54     91
D638V6, multiclass
        clus
vv       ELK3 MUTATED ELK3 WILD-TYPE
  CLUS_1            0            106
  CLUS_2            0             54
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELK3 MUTATED        6      0      0
  ELK3 WILD-TYPE    117     95     71
D638V7, multiclass
        clus
vv       ELK3 MUTATED ELK3 WILD-TYPE
  CLUS_1            6            117
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELK3 MUTATED        6      0      0
  ELK3 WILD-TYPE    151     63     69
D638V8, multiclass
        clus
vv       ELK3 MUTATED ELK3 WILD-TYPE
  CLUS_1            6            151
  CLUS_2            0             63
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ELK3 MUTATED        1      1      3      1      0      0
  ELK3 WILD-TYPE     32     18     56     38     16     45
D638V9, multiclass
        clus
vv       ELK3 MUTATED ELK3 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            3             56
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ELK3 MUTATED        3      0      3      0      0      0
  ELK3 WILD-TYPE     44     39     32     32     23     35
D638V10, multiclass
        clus
vv       ELK3 MUTATED ELK3 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            0             39
  CLUS_3            3             32
  CLUS_4            0             32
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(639) Variable = HIST1H1A MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H1A MUTATED        0      4      1      0      0
  HIST1H1A WILD-TYPE     79    122     26     43     12
D639V1, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                0                 79
  CLUS_2                4                122
  CLUS_3                1                 26
  CLUS_4                0                 43
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1A MUTATED        0      2      0      1
  HIST1H1A WILD-TYPE     71     74     34     62
D639V2, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                0                 71
  CLUS_2                2                 74
  CLUS_3                0                 34
  CLUS_4                1                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H1A MUTATED        0      3      0      0      2
  HIST1H1A WILD-TYPE     16     59     51     65     53
D639V3, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                3                 59
  CLUS_3                0                 51
  CLUS_4                0                 65
  CLUS_5                2                 53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1A MUTATED        0      3      1      1
  HIST1H1A WILD-TYPE     98     41     49     56
D639V4, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                0                 98
  CLUS_2                3                 41
  CLUS_3                1                 49
  CLUS_4                1                 56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H1A MUTATED        2      0      1      0      0
  HIST1H1A WILD-TYPE     60     59     39     37     59
D639V5, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                2                 60
  CLUS_2                0                 59
  CLUS_3                1                 39
  CLUS_4                0                 37
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1A MUTATED        0      0      3
  HIST1H1A WILD-TYPE    106     54     94
D639V6, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                0                106
  CLUS_2                0                 54
  CLUS_3                3                 94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1A MUTATED        3      2      0
  HIST1H1A WILD-TYPE    120     93     71
D639V7, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                3                120
  CLUS_2                2                 93
  CLUS_3                0                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1A MUTATED        5      0      0
  HIST1H1A WILD-TYPE    152     63     69
D639V8, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                5                152
  CLUS_2                0                 63
  CLUS_3                0                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HIST1H1A MUTATED        0      0      1      1      0      1
  HIST1H1A WILD-TYPE     33     19     58     38     16     44
D639V9, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                0                 19
  CLUS_3                1                 58
  CLUS_4                1                 38
  CLUS_5                0                 16
  CLUS_6                1                 44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HIST1H1A MUTATED        1      0      0      1      1      0
  HIST1H1A WILD-TYPE     46     39     35     31     22     35
D639V10, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                1                 46
  CLUS_2                0                 39
  CLUS_3                0                 35
  CLUS_4                1                 31
  CLUS_5                1                 22
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(640) Variable = ACSS2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACSS2 MUTATED        0      8      1      0      0
  ACSS2 WILD-TYPE     79    118     26     43     12
D640V1, multiclass
        clus
vv       ACSS2 MUTATED ACSS2 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             8             118
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACSS2 MUTATED        1      4      1      1
  ACSS2 WILD-TYPE     70     72     33     62
D640V2, multiclass
        clus
vv       ACSS2 MUTATED ACSS2 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             4              72
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACSS2 MUTATED        1      2      6      0      0
  ACSS2 WILD-TYPE     15     60     45     65     55
D640V3, multiclass
        clus
vv       ACSS2 MUTATED ACSS2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              60
  CLUS_3             6              45
  CLUS_4             0              65
  CLUS_5             0              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACSS2 MUTATED        3      6      0      0
  ACSS2 WILD-TYPE     95     38     50     57
D640V4, multiclass
        clus
vv       ACSS2 MUTATED ACSS2 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             6              38
  CLUS_3             0              50
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACSS2 MUTATED        4      2      1      1      0
  ACSS2 WILD-TYPE     58     57     39     36     59
D640V5, multiclass
        clus
vv       ACSS2 MUTATED ACSS2 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             2              57
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACSS2 MUTATED        0      2      6
  ACSS2 WILD-TYPE    106     52     91
D640V6, multiclass
        clus
vv       ACSS2 MUTATED ACSS2 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             2              52
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACSS2 MUTATED        5      3      1
  ACSS2 WILD-TYPE    118     92     70
D640V7, multiclass
        clus
vv       ACSS2 MUTATED ACSS2 WILD-TYPE
  CLUS_1             5             118
  CLUS_2             3              92
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACSS2 MUTATED        6      3      0
  ACSS2 WILD-TYPE    151     60     69
D640V8, multiclass
        clus
vv       ACSS2 MUTATED ACSS2 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             3              60
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACSS2 MUTATED        0      1      1      2      0      2
  ACSS2 WILD-TYPE     33     18     58     37     16     43
D640V9, multiclass
        clus
vv       ACSS2 MUTATED ACSS2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              18
  CLUS_3             1              58
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             2              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACSS2 MUTATED        2      2      1      0      1      0
  ACSS2 WILD-TYPE     45     37     34     32     22     35
D640V10, multiclass
        clus
vv       ACSS2 MUTATED ACSS2 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             2              37
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(641) Variable = ZBTB40 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB40 MUTATED        1      5      1      2      1
  ZBTB40 WILD-TYPE     78    121     26     41     11
D641V1, multiclass
        clus
vv       ZBTB40 MUTATED ZBTB40 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              5              121
  CLUS_3              1               26
  CLUS_4              2               41
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB40 MUTATED        1      7      1      0
  ZBTB40 WILD-TYPE     70     69     33     63
D641V2, multiclass
        clus
vv       ZBTB40 MUTATED ZBTB40 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              7               69
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB40 MUTATED        0      4      3      1      1
  ZBTB40 WILD-TYPE     16     58     48     64     54
D641V3, multiclass
        clus
vv       ZBTB40 MUTATED ZBTB40 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              4               58
  CLUS_3              3               48
  CLUS_4              1               64
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB40 MUTATED        2      2      4      1
  ZBTB40 WILD-TYPE     96     42     46     56
D641V4, multiclass
        clus
vv       ZBTB40 MUTATED ZBTB40 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              2               42
  CLUS_3              4               46
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB40 MUTATED        3      0      1      2      1
  ZBTB40 WILD-TYPE     59     59     39     35     58
D641V5, multiclass
        clus
vv       ZBTB40 MUTATED ZBTB40 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              2               35
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB40 MUTATED        2      0      5
  ZBTB40 WILD-TYPE    104     54     92
D641V6, multiclass
        clus
vv       ZBTB40 MUTATED ZBTB40 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              0               54
  CLUS_3              5               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB40 MUTATED        7      1      2
  ZBTB40 WILD-TYPE    116     94     69
D641V7, multiclass
        clus
vv       ZBTB40 MUTATED ZBTB40 WILD-TYPE
  CLUS_1              7              116
  CLUS_2              1               94
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB40 MUTATED        8      1      1
  ZBTB40 WILD-TYPE    149     62     68
D641V8, multiclass
        clus
vv       ZBTB40 MUTATED ZBTB40 WILD-TYPE
  CLUS_1              8              149
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZBTB40 MUTATED        2      1      2      1      1      1
  ZBTB40 WILD-TYPE     31     18     57     38     15     44
D641V9, multiclass
        clus
vv       ZBTB40 MUTATED ZBTB40 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              1               38
  CLUS_5              1               15
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZBTB40 MUTATED        2      0      3      2      1      0
  ZBTB40 WILD-TYPE     45     39     32     30     22     35
D641V10, multiclass
        clus
vv       ZBTB40 MUTATED ZBTB40 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              2               30
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(642) Variable = OSTALPHA MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSTALPHA MUTATED        0      3      0      0      0
  OSTALPHA WILD-TYPE     79    123     27     43     12
D642V1, multiclass
        clus
vv       OSTALPHA MUTATED OSTALPHA WILD-TYPE
  CLUS_1                0                 79
  CLUS_2                3                123
  CLUS_3                0                 27
  CLUS_4                0                 43
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSTALPHA MUTATED        0      2      0      1
  OSTALPHA WILD-TYPE     71     74     34     62
D642V2, multiclass
        clus
vv       OSTALPHA MUTATED OSTALPHA WILD-TYPE
  CLUS_1                0                 71
  CLUS_2                2                 74
  CLUS_3                0                 34
  CLUS_4                1                 62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSTALPHA MUTATED        0      2      0      0      1
  OSTALPHA WILD-TYPE     16     60     51     65     54
D642V3, multiclass
        clus
vv       OSTALPHA MUTATED OSTALPHA WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                2                 60
  CLUS_3                0                 51
  CLUS_4                0                 65
  CLUS_5                1                 54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSTALPHA MUTATED        0      1      2      0
  OSTALPHA WILD-TYPE     98     43     48     57
D642V4, multiclass
        clus
vv       OSTALPHA MUTATED OSTALPHA WILD-TYPE
  CLUS_1                0                 98
  CLUS_2                1                 43
  CLUS_3                2                 48
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSTALPHA MUTATED        2      0      0      1      0
  OSTALPHA WILD-TYPE     60     59     40     36     59
D642V5, multiclass
        clus
vv       OSTALPHA MUTATED OSTALPHA WILD-TYPE
  CLUS_1                2                 60
  CLUS_2                0                 59
  CLUS_3                0                 40
  CLUS_4                1                 36
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  OSTALPHA MUTATED        1      1      1
  OSTALPHA WILD-TYPE    105     53     96
D642V6, multiclass
        clus
vv       OSTALPHA MUTATED OSTALPHA WILD-TYPE
  CLUS_1                1                105
  CLUS_2                1                 53
  CLUS_3                1                 96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  OSTALPHA MUTATED        2      1      0
  OSTALPHA WILD-TYPE    121     94     71
D642V7, multiclass
        clus
vv       OSTALPHA MUTATED OSTALPHA WILD-TYPE
  CLUS_1                2                121
  CLUS_2                1                 94
  CLUS_3                0                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  OSTALPHA MUTATED        2      1      0
  OSTALPHA WILD-TYPE    155     62     69
D642V8, multiclass
        clus
vv       OSTALPHA MUTATED OSTALPHA WILD-TYPE
  CLUS_1                2                155
  CLUS_2                1                 62
  CLUS_3                0                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OSTALPHA MUTATED        1      0      1      1      0      0
  OSTALPHA WILD-TYPE     32     19     58     38     16     45
D642V9, multiclass
        clus
vv       OSTALPHA MUTATED OSTALPHA WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                0                 19
  CLUS_3                1                 58
  CLUS_4                1                 38
  CLUS_5                0                 16
  CLUS_6                0                 45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OSTALPHA MUTATED        0      0      1      1      1      0
  OSTALPHA WILD-TYPE     47     39     34     31     22     35
D642V10, multiclass
        clus
vv       OSTALPHA MUTATED OSTALPHA WILD-TYPE
  CLUS_1                0                 47
  CLUS_2                0                 39
  CLUS_3                1                 34
  CLUS_4                1                 31
  CLUS_5                1                 22
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(643) Variable = PPARG MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPARG MUTATED        0      3      0      0      1
  PPARG WILD-TYPE     79    123     27     43     11
D643V1, multiclass
        clus
vv       PPARG MUTATED PPARG WILD-TYPE
  CLUS_1             0              79
  CLUS_2             3             123
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPARG MUTATED        0      1      1      0
  PPARG WILD-TYPE     71     75     33     63
D643V2, multiclass
[1] "Remove cluster labels:" "PPARG MUTATED"         
clus
  PPARG MUTATED PPARG WILD-TYPE 
              2             242 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8081 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297      TCGA-BR-8360 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J6      TCGA-BR-A4J7 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-5717      TCGA-CG-5718 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-EQ-5647      TCGA-EQ-8122      TCGA-EQ-A4SO 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-FP-8631      TCGA-FP-A4BE      TCGA-FP-A4BF      TCGA-HF-7132 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HF-7133      TCGA-HF-7136      TCGA-HJ-7597      TCGA-HU-8243 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-8245      TCGA-HU-8249      TCGA-HU-8602      TCGA-HU-8604 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4G3 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4G6      TCGA-HU-A4G8      TCGA-HU-A4G9      TCGA-HU-A4GC 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H0      TCGA-HU-A4H2 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-IN-8663      TCGA-IP-7968 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPARG MUTATED        0      1      0      0      2
  PPARG WILD-TYPE     16     61     51     65     53
D643V3, multiclass
        clus
vv       PPARG MUTATED PPARG WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              61
  CLUS_3             0              51
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPARG MUTATED        1      1      1      0
  PPARG WILD-TYPE     97     43     49     57
D643V4, multiclass
        clus
vv       PPARG MUTATED PPARG WILD-TYPE
  CLUS_1             1              97
  CLUS_2             1              43
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPARG MUTATED        2      0      1      1      0
  PPARG WILD-TYPE     60     59     39     36     59
D643V5, multiclass
        clus
vv       PPARG MUTATED PPARG WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PPARG MUTATED        1      0      3
  PPARG WILD-TYPE    105     54     94
D643V6, multiclass
        clus
vv       PPARG MUTATED PPARG WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PPARG MUTATED        4      0      0
  PPARG WILD-TYPE    119     95     71
D643V7, multiclass
        clus
vv       PPARG MUTATED PPARG WILD-TYPE
  CLUS_1             4             119
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PPARG MUTATED        4      0      0
  PPARG WILD-TYPE    153     63     69
D643V8, multiclass
        clus
vv       PPARG MUTATED PPARG WILD-TYPE
  CLUS_1             4             153
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPARG MUTATED        0      1      1      0      0      0
  PPARG WILD-TYPE     33     18     58     39     16     45
D643V9, multiclass
[1] "Remove cluster labels:" "PPARG MUTATED"         
clus
  PPARG MUTATED PPARG WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7851 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8078 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J6 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HF-7136      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4H2      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-IP-7968 
"PPARG WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPARG MUTATED        1      0      1      0      0      0
  PPARG WILD-TYPE     46     39     34     32     23     35
D643V10, multiclass
[1] "Remove cluster labels:" "PPARG MUTATED"         
clus
  PPARG MUTATED PPARG WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7707 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7851 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8078 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J6 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HF-7136      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4H2      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-IP-7968 
"PPARG WILD-TYPE" 

Clustering(644) Variable = MAPK15 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAPK15 MUTATED        0      5      0      1      1
  MAPK15 WILD-TYPE     79    121     27     42     11
D644V1, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              5              121
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK15 MUTATED        0      3      0      0
  MAPK15 WILD-TYPE     71     73     34     63
D644V2, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              3               73
  CLUS_3              0               34
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAPK15 MUTATED        0      1      0      1      4
  MAPK15 WILD-TYPE     16     61     51     64     51
D644V3, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              1               61
  CLUS_3              0               51
  CLUS_4              1               64
  CLUS_5              4               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK15 MUTATED        2      2      1      1
  MAPK15 WILD-TYPE     96     42     49     56
D644V4, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              2               42
  CLUS_3              1               49
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAPK15 MUTATED        4      1      1      0      0
  MAPK15 WILD-TYPE     58     58     39     37     59
D644V5, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              0               37
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAPK15 MUTATED        1      0      5
  MAPK15 WILD-TYPE    105     54     92
D644V6, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               54
  CLUS_3              5               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAPK15 MUTATED        5      1      1
  MAPK15 WILD-TYPE    118     94     70
D644V7, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              5              118
  CLUS_2              1               94
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAPK15 MUTATED        5      1      1
  MAPK15 WILD-TYPE    152     62     68
D644V8, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              5              152
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAPK15 MUTATED        0      0      1      2      0      0
  MAPK15 WILD-TYPE     33     19     58     37     16     45
D644V9, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               19
  CLUS_3              1               58
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAPK15 MUTATED        1      0      1      1      0      0
  MAPK15 WILD-TYPE     46     39     34     31     23     35
D644V10, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(645) Variable = CASKIN2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASKIN2 MUTATED        0      7      1      0      1
  CASKIN2 WILD-TYPE     79    119     26     43     11
D645V1, multiclass
        clus
vv       CASKIN2 MUTATED CASKIN2 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               7               119
  CLUS_3               1                26
  CLUS_4               0                43
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASKIN2 MUTATED        2      4      1      1
  CASKIN2 WILD-TYPE     69     72     33     62
D645V2, multiclass
        clus
vv       CASKIN2 MUTATED CASKIN2 WILD-TYPE
  CLUS_1               2                69
  CLUS_2               4                72
  CLUS_3               1                33
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASKIN2 MUTATED        0      3      1      1      2
  CASKIN2 WILD-TYPE     16     59     50     64     53
D645V3, multiclass
        clus
vv       CASKIN2 MUTATED CASKIN2 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               3                59
  CLUS_3               1                50
  CLUS_4               1                64
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASKIN2 MUTATED        0      3      3      1
  CASKIN2 WILD-TYPE     98     41     47     56
D645V4, multiclass
        clus
vv       CASKIN2 MUTATED CASKIN2 WILD-TYPE
  CLUS_1               0                98
  CLUS_2               3                41
  CLUS_3               3                47
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASKIN2 MUTATED        4      1      1      2      1
  CASKIN2 WILD-TYPE     58     58     39     35     58
D645V5, multiclass
        clus
vv       CASKIN2 MUTATED CASKIN2 WILD-TYPE
  CLUS_1               4                58
  CLUS_2               1                58
  CLUS_3               1                39
  CLUS_4               2                35
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CASKIN2 MUTATED        2      0      7
  CASKIN2 WILD-TYPE    104     54     90
D645V6, multiclass
        clus
vv       CASKIN2 MUTATED CASKIN2 WILD-TYPE
  CLUS_1               2               104
  CLUS_2               0                54
  CLUS_3               7                90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CASKIN2 MUTATED        6      2      1
  CASKIN2 WILD-TYPE    117     93     70
D645V7, multiclass
        clus
vv       CASKIN2 MUTATED CASKIN2 WILD-TYPE
  CLUS_1               6               117
  CLUS_2               2                93
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CASKIN2 MUTATED        7      0      2
  CASKIN2 WILD-TYPE    150     63     67
D645V8, multiclass
        clus
vv       CASKIN2 MUTATED CASKIN2 WILD-TYPE
  CLUS_1               7               150
  CLUS_2               0                63
  CLUS_3               2                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CASKIN2 MUTATED        0      1      4      2      1      0
  CASKIN2 WILD-TYPE     33     18     55     37     15     45
D645V9, multiclass
        clus
vv       CASKIN2 MUTATED CASKIN2 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                18
  CLUS_3               4                55
  CLUS_4               2                37
  CLUS_5               1                15
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CASKIN2 MUTATED        4      0      2      0      1      1
  CASKIN2 WILD-TYPE     43     39     33     32     22     34
D645V10, multiclass
        clus
vv       CASKIN2 MUTATED CASKIN2 WILD-TYPE
  CLUS_1               4                43
  CLUS_2               0                39
  CLUS_3               2                33
  CLUS_4               0                32
  CLUS_5               1                22
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(646) Variable = TRIM27 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIM27 MUTATED        0      4      0      0      1
  TRIM27 WILD-TYPE     79    122     27     43     11
D646V1, multiclass
        clus
vv       TRIM27 MUTATED TRIM27 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              4              122
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM27 MUTATED        0      3      1      0
  TRIM27 WILD-TYPE     71     73     33     63
D646V2, multiclass
        clus
vv       TRIM27 MUTATED TRIM27 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              3               73
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIM27 MUTATED        0      2      1      0      1
  TRIM27 WILD-TYPE     16     60     50     65     54
D646V3, multiclass
        clus
vv       TRIM27 MUTATED TRIM27 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              2               60
  CLUS_3              1               50
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM27 MUTATED        1      2      1      0
  TRIM27 WILD-TYPE     97     42     49     57
D646V4, multiclass
        clus
vv       TRIM27 MUTATED TRIM27 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              2               42
  CLUS_3              1               49
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIM27 MUTATED        3      0      0      2      0
  TRIM27 WILD-TYPE     59     59     40     35     59
D646V5, multiclass
        clus
vv       TRIM27 MUTATED TRIM27 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              2               35
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM27 MUTATED        1      0      4
  TRIM27 WILD-TYPE    105     54     93
D646V6, multiclass
        clus
vv       TRIM27 MUTATED TRIM27 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               54
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM27 MUTATED        5      0      0
  TRIM27 WILD-TYPE    118     95     71
D646V7, multiclass
        clus
vv       TRIM27 MUTATED TRIM27 WILD-TYPE
  CLUS_1              5              118
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM27 MUTATED        5      0      0
  TRIM27 WILD-TYPE    152     63     69
D646V8, multiclass
        clus
vv       TRIM27 MUTATED TRIM27 WILD-TYPE
  CLUS_1              5              152
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRIM27 MUTATED        0      0      3      1      0      0
  TRIM27 WILD-TYPE     33     19     56     38     16     45
D646V9, multiclass
        clus
vv       TRIM27 MUTATED TRIM27 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               19
  CLUS_3              3               56
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRIM27 MUTATED        2      0      1      1      0      0
  TRIM27 WILD-TYPE     45     39     34     31     23     35
D646V10, multiclass
        clus
vv       TRIM27 MUTATED TRIM27 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(647) Variable = KYNU MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KYNU MUTATED        1      9      0      0      0
  KYNU WILD-TYPE     78    117     27     43     12
D647V1, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            1             78
  CLUS_2            9            117
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KYNU MUTATED        1      2      2      2
  KYNU WILD-TYPE     70     74     32     61
D647V2, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            1             70
  CLUS_2            2             74
  CLUS_3            2             32
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KYNU MUTATED        1      3      3      0      3
  KYNU WILD-TYPE     15     59     48     65     52
D647V3, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            1             15
  CLUS_2            3             59
  CLUS_3            3             48
  CLUS_4            0             65
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KYNU MUTATED        4      3      2      1
  KYNU WILD-TYPE     94     41     48     56
D647V4, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            4             94
  CLUS_2            3             41
  CLUS_3            2             48
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KYNU MUTATED        7      0      0      2      1
  KYNU WILD-TYPE     55     59     40     35     58
D647V5, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            7             55
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            2             35
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KYNU MUTATED        4      0      6
  KYNU WILD-TYPE    102     54     91
D647V6, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            4            102
  CLUS_2            0             54
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KYNU MUTATED        8      1      1
  KYNU WILD-TYPE    115     94     70
D647V7, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            8            115
  CLUS_2            1             94
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KYNU MUTATED        8      1      1
  KYNU WILD-TYPE    149     62     68
D647V8, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            8            149
  CLUS_2            1             62
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KYNU MUTATED        2      0      3      1      0      0
  KYNU WILD-TYPE     31     19     56     38     16     45
D647V9, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            2             31
  CLUS_2            0             19
  CLUS_3            3             56
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KYNU MUTATED        1      0      3      1      1      0
  KYNU WILD-TYPE     46     39     32     31     22     35
D647V10, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            1             46
  CLUS_2            0             39
  CLUS_3            3             32
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(648) Variable = TM6SF1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TM6SF1 MUTATED        0      6      0      0      0
  TM6SF1 WILD-TYPE     79    120     27     43     12
D648V1, multiclass
        clus
vv       TM6SF1 MUTATED TM6SF1 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              6              120
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM6SF1 MUTATED        0      3      1      0
  TM6SF1 WILD-TYPE     71     73     33     63
D648V2, multiclass
        clus
vv       TM6SF1 MUTATED TM6SF1 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              3               73
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TM6SF1 MUTATED        0      2      4      0      0
  TM6SF1 WILD-TYPE     16     60     47     65     55
D648V3, multiclass
        clus
vv       TM6SF1 MUTATED TM6SF1 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              2               60
  CLUS_3              4               47
  CLUS_4              0               65
  CLUS_5              0               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM6SF1 MUTATED        1      4      1      0
  TM6SF1 WILD-TYPE     97     40     49     57
D648V4, multiclass
        clus
vv       TM6SF1 MUTATED TM6SF1 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              4               40
  CLUS_3              1               49
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TM6SF1 MUTATED        4      0      1      1      0
  TM6SF1 WILD-TYPE     58     59     39     36     59
D648V5, multiclass
        clus
vv       TM6SF1 MUTATED TM6SF1 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TM6SF1 MUTATED        1      0      5
  TM6SF1 WILD-TYPE    105     54     92
D648V6, multiclass
        clus
vv       TM6SF1 MUTATED TM6SF1 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               54
  CLUS_3              5               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TM6SF1 MUTATED        5      1      0
  TM6SF1 WILD-TYPE    118     94     71
D648V7, multiclass
        clus
vv       TM6SF1 MUTATED TM6SF1 WILD-TYPE
  CLUS_1              5              118
  CLUS_2              1               94
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TM6SF1 MUTATED        6      0      0
  TM6SF1 WILD-TYPE    151     63     69
D648V8, multiclass
        clus
vv       TM6SF1 MUTATED TM6SF1 WILD-TYPE
  CLUS_1              6              151
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TM6SF1 MUTATED        0      0      2      1      0      0
  TM6SF1 WILD-TYPE     33     19     57     38     16     45
D648V9, multiclass
        clus
vv       TM6SF1 MUTATED TM6SF1 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               19
  CLUS_3              2               57
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TM6SF1 MUTATED        0      0      2      0      1      0
  TM6SF1 WILD-TYPE     47     39     33     32     22     35
D648V10, multiclass
        clus
vv       TM6SF1 MUTATED TM6SF1 WILD-TYPE
  CLUS_1              0               47
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              0               32
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(649) Variable = WDTC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDTC1 MUTATED        0     13      1      0      1
  WDTC1 WILD-TYPE     79    113     26     43     11
D649V1, multiclass
        clus
vv       WDTC1 MUTATED WDTC1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2            13             113
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDTC1 MUTATED        0      9      3      2
  WDTC1 WILD-TYPE     71     67     31     61
D649V2, multiclass
        clus
vv       WDTC1 MUTATED WDTC1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             9              67
  CLUS_3             3              31
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDTC1 MUTATED        1      7      3      0      2
  WDTC1 WILD-TYPE     15     55     48     65     53
D649V3, multiclass
        clus
vv       WDTC1 MUTATED WDTC1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             7              55
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDTC1 MUTATED        2      6      5      0
  WDTC1 WILD-TYPE     96     38     45     57
D649V4, multiclass
        clus
vv       WDTC1 MUTATED WDTC1 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             6              38
  CLUS_3             5              45
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDTC1 MUTATED       10      0      0      5      0
  WDTC1 WILD-TYPE     52     59     40     32     59
D649V5, multiclass
        clus
vv       WDTC1 MUTATED WDTC1 WILD-TYPE
  CLUS_1            10              52
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             5              32
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDTC1 MUTATED        2      0     13
  WDTC1 WILD-TYPE    104     54     84
D649V6, multiclass
        clus
vv       WDTC1 MUTATED WDTC1 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3            13              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDTC1 MUTATED       13      1      1
  WDTC1 WILD-TYPE    110     94     70
D649V7, multiclass
        clus
vv       WDTC1 MUTATED WDTC1 WILD-TYPE
  CLUS_1            13             110
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDTC1 MUTATED       14      1      0
  WDTC1 WILD-TYPE    143     62     69
D649V8, multiclass
        clus
vv       WDTC1 MUTATED WDTC1 WILD-TYPE
  CLUS_1            14             143
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WDTC1 MUTATED        1      3      5      3      0      0
  WDTC1 WILD-TYPE     32     16     54     36     16     45
D649V9, multiclass
        clus
vv       WDTC1 MUTATED WDTC1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             3              16
  CLUS_3             5              54
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WDTC1 MUTATED        5      0      4      1      2      0
  WDTC1 WILD-TYPE     42     39     31     31     21     35
D649V10, multiclass
        clus
vv       WDTC1 MUTATED WDTC1 WILD-TYPE
  CLUS_1             5              42
  CLUS_2             0              39
  CLUS_3             4              31
  CLUS_4             1              31
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(650) Variable = NEK8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEK8 MUTATED        1      9      0      0      1
  NEK8 WILD-TYPE     78    117     27     43     11
D650V1, multiclass
        clus
vv       NEK8 MUTATED NEK8 WILD-TYPE
  CLUS_1            1             78
  CLUS_2            9            117
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEK8 MUTATED        2      5      1      2
  NEK8 WILD-TYPE     69     71     33     61
D650V2, multiclass
        clus
vv       NEK8 MUTATED NEK8 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            5             71
  CLUS_3            1             33
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEK8 MUTATED        1      5      4      0      1
  NEK8 WILD-TYPE     15     57     47     65     54
D650V3, multiclass
        clus
vv       NEK8 MUTATED NEK8 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            5             57
  CLUS_3            4             47
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEK8 MUTATED        3      3      5      0
  NEK8 WILD-TYPE     95     41     45     57
D650V4, multiclass
        clus
vv       NEK8 MUTATED NEK8 WILD-TYPE
  CLUS_1            3             95
  CLUS_2            3             41
  CLUS_3            5             45
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEK8 MUTATED        6      0      1      1      0
  NEK8 WILD-TYPE     56     59     39     36     59
D650V5, multiclass
        clus
vv       NEK8 MUTATED NEK8 WILD-TYPE
  CLUS_1            6             56
  CLUS_2            0             59
  CLUS_3            1             39
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEK8 MUTATED        2      0      6
  NEK8 WILD-TYPE    104     54     91
D650V6, multiclass
        clus
vv       NEK8 MUTATED NEK8 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            0             54
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEK8 MUTATED        9      0      2
  NEK8 WILD-TYPE    114     95     69
D650V7, multiclass
        clus
vv       NEK8 MUTATED NEK8 WILD-TYPE
  CLUS_1            9            114
  CLUS_2            0             95
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEK8 MUTATED       10      0      1
  NEK8 WILD-TYPE    147     63     68
D650V8, multiclass
        clus
vv       NEK8 MUTATED NEK8 WILD-TYPE
  CLUS_1           10            147
  CLUS_2            0             63
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NEK8 MUTATED        2      2      3      1      0      0
  NEK8 WILD-TYPE     31     17     56     38     16     45
D650V9, multiclass
        clus
vv       NEK8 MUTATED NEK8 WILD-TYPE
  CLUS_1            2             31
  CLUS_2            2             17
  CLUS_3            3             56
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NEK8 MUTATED        2      0      3      1      1      1
  NEK8 WILD-TYPE     45     39     32     31     22     34
D650V10, multiclass
        clus
vv       NEK8 MUTATED NEK8 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            3             32
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(651) Variable = CCDC27 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC27 MUTATED        1      5      0      0      0
  CCDC27 WILD-TYPE     78    121     27     43     12
D651V1, multiclass
        clus
vv       CCDC27 MUTATED CCDC27 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              5              121
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC27 MUTATED        0      3      0      2
  CCDC27 WILD-TYPE     71     73     34     61
D651V2, multiclass
        clus
vv       CCDC27 MUTATED CCDC27 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              3               73
  CLUS_3              0               34
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC27 MUTATED        1      1      3      1      0
  CCDC27 WILD-TYPE     15     61     48     64     55
D651V3, multiclass
        clus
vv       CCDC27 MUTATED CCDC27 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              1               61
  CLUS_3              3               48
  CLUS_4              1               64
  CLUS_5              0               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC27 MUTATED        3      2      1      0
  CCDC27 WILD-TYPE     95     42     49     57
D651V4, multiclass
        clus
vv       CCDC27 MUTATED CCDC27 WILD-TYPE
  CLUS_1              3               95
  CLUS_2              2               42
  CLUS_3              1               49
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC27 MUTATED        3      1      1      1      0
  CCDC27 WILD-TYPE     59     58     39     36     59
D651V5, multiclass
        clus
vv       CCDC27 MUTATED CCDC27 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC27 MUTATED        4      0      2
  CCDC27 WILD-TYPE    102     54     95
D651V6, multiclass
        clus
vv       CCDC27 MUTATED CCDC27 WILD-TYPE
  CLUS_1              4              102
  CLUS_2              0               54
  CLUS_3              2               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC27 MUTATED        4      2      0
  CCDC27 WILD-TYPE    119     93     71
D651V7, multiclass
        clus
vv       CCDC27 MUTATED CCDC27 WILD-TYPE
  CLUS_1              4              119
  CLUS_2              2               93
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC27 MUTATED        4      1      1
  CCDC27 WILD-TYPE    153     62     68
D651V8, multiclass
        clus
vv       CCDC27 MUTATED CCDC27 WILD-TYPE
  CLUS_1              4              153
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC27 MUTATED        0      0      3      1      0      1
  CCDC27 WILD-TYPE     33     19     56     38     16     44
D651V9, multiclass
        clus
vv       CCDC27 MUTATED CCDC27 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               19
  CLUS_3              3               56
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC27 MUTATED        1      1      2      1      0      0
  CCDC27 WILD-TYPE     46     38     33     31     23     35
D651V10, multiclass
        clus
vv       CCDC27 MUTATED CCDC27 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              1               38
  CLUS_3              2               33
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(652) Variable = THYN1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THYN1 MUTATED        1      4      1      1      1
  THYN1 WILD-TYPE     78    122     26     42     11
D652V1, multiclass
        clus
vv       THYN1 MUTATED THYN1 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             4             122
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THYN1 MUTATED        1      5      0      1
  THYN1 WILD-TYPE     70     71     34     62
D652V2, multiclass
        clus
vv       THYN1 MUTATED THYN1 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             5              71
  CLUS_3             0              34
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THYN1 MUTATED        1      3      1      0      2
  THYN1 WILD-TYPE     15     59     50     65     53
D652V3, multiclass
        clus
vv       THYN1 MUTATED THYN1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3              59
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THYN1 MUTATED        4      1      2      0
  THYN1 WILD-TYPE     94     43     48     57
D652V4, multiclass
        clus
vv       THYN1 MUTATED THYN1 WILD-TYPE
  CLUS_1             4              94
  CLUS_2             1              43
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THYN1 MUTATED        3      0      1      1      1
  THYN1 WILD-TYPE     59     59     39     36     58
D652V5, multiclass
        clus
vv       THYN1 MUTATED THYN1 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THYN1 MUTATED        2      0      4
  THYN1 WILD-TYPE    104     54     93
D652V6, multiclass
        clus
vv       THYN1 MUTATED THYN1 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THYN1 MUTATED        6      1      1
  THYN1 WILD-TYPE    117     94     70
D652V7, multiclass
        clus
vv       THYN1 MUTATED THYN1 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THYN1 MUTATED        6      1      1
  THYN1 WILD-TYPE    151     62     68
D652V8, multiclass
        clus
vv       THYN1 MUTATED THYN1 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  THYN1 MUTATED        1      0      3      1      1      0
  THYN1 WILD-TYPE     32     19     56     38     15     45
D652V9, multiclass
        clus
vv       THYN1 MUTATED THYN1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             3              56
  CLUS_4             1              38
  CLUS_5             1              15
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  THYN1 MUTATED        1      0      2      2      0      1
  THYN1 WILD-TYPE     46     39     33     30     23     34
D652V10, multiclass
        clus
vv       THYN1 MUTATED THYN1 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             2              30
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(653) Variable = TRIP11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP11 MUTATED        3      8      2      0      0
  TRIP11 WILD-TYPE     76    118     25     43     12
D653V1, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              3               76
  CLUS_2              8              118
  CLUS_3              2               25
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP11 MUTATED        2      5      3      2
  TRIP11 WILD-TYPE     69     71     31     61
D653V2, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              5               71
  CLUS_3              3               31
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP11 MUTATED        3      2      5      1      1
  TRIP11 WILD-TYPE     13     60     46     64     54
D653V3, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              3               13
  CLUS_2              2               60
  CLUS_3              5               46
  CLUS_4              1               64
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP11 MUTATED        6      3      2      1
  TRIP11 WILD-TYPE     92     41     48     56
D653V4, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              6               92
  CLUS_2              3               41
  CLUS_3              2               48
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP11 MUTATED        5      1      1      1      2
  TRIP11 WILD-TYPE     57     58     39     36     57
D653V5, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              5               57
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              1               36
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIP11 MUTATED        5      0      5
  TRIP11 WILD-TYPE    101     54     92
D653V6, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              5              101
  CLUS_2              0               54
  CLUS_3              5               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIP11 MUTATED        7      4      2
  TRIP11 WILD-TYPE    116     91     69
D653V7, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              7              116
  CLUS_2              4               91
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIP11 MUTATED        7      2      4
  TRIP11 WILD-TYPE    150     61     65
D653V8, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              7              150
  CLUS_2              2               61
  CLUS_3              4               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRIP11 MUTATED        2      1      6      1      1      1
  TRIP11 WILD-TYPE     31     18     53     38     15     44
D653V9, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               18
  CLUS_3              6               53
  CLUS_4              1               38
  CLUS_5              1               15
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRIP11 MUTATED        3      1      4      2      1      1
  TRIP11 WILD-TYPE     44     38     31     30     22     34
D653V10, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              1               38
  CLUS_3              4               31
  CLUS_4              2               30
  CLUS_5              1               22
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(654) Variable = KIAA0586 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0586 MUTATED        2      7      1      0      0
  KIAA0586 WILD-TYPE     77    119     26     43     12
D654V1, multiclass
        clus
vv       KIAA0586 MUTATED KIAA0586 WILD-TYPE
  CLUS_1                2                 77
  CLUS_2                7                119
  CLUS_3                1                 26
  CLUS_4                0                 43
  CLUS_5                0                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0586 MUTATED        2      4      0      2
  KIAA0586 WILD-TYPE     69     72     34     61
D654V2, multiclass
        clus
vv       KIAA0586 MUTATED KIAA0586 WILD-TYPE
  CLUS_1                2                 69
  CLUS_2                4                 72
  CLUS_3                0                 34
  CLUS_4                2                 61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0586 MUTATED        2      3      0      0      5
  KIAA0586 WILD-TYPE     14     59     51     65     50
D654V3, multiclass
        clus
vv       KIAA0586 MUTATED KIAA0586 WILD-TYPE
  CLUS_1                2                 14
  CLUS_2                3                 59
  CLUS_3                0                 51
  CLUS_4                0                 65
  CLUS_5                5                 50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0586 MUTATED        3      4      2      1
  KIAA0586 WILD-TYPE     95     40     48     56
D654V4, multiclass
        clus
vv       KIAA0586 MUTATED KIAA0586 WILD-TYPE
  CLUS_1                3                 95
  CLUS_2                4                 40
  CLUS_3                2                 48
  CLUS_4                1                 56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0586 MUTATED        4      0      1      1      2
  KIAA0586 WILD-TYPE     58     59     39     36     57
D654V5, multiclass
        clus
vv       KIAA0586 MUTATED KIAA0586 WILD-TYPE
  CLUS_1                4                 58
  CLUS_2                0                 59
  CLUS_3                1                 39
  CLUS_4                1                 36
  CLUS_5                2                 57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0586 MUTATED        5      0      3
  KIAA0586 WILD-TYPE    101     54     94
D654V6, multiclass
        clus
vv       KIAA0586 MUTATED KIAA0586 WILD-TYPE
  CLUS_1                5                101
  CLUS_2                0                 54
  CLUS_3                3                 94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0586 MUTATED        8      1      1
  KIAA0586 WILD-TYPE    115     94     70
D654V7, multiclass
        clus
vv       KIAA0586 MUTATED KIAA0586 WILD-TYPE
  CLUS_1                8                115
  CLUS_2                1                 94
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0586 MUTATED        8      1      1
  KIAA0586 WILD-TYPE    149     62     68
D654V8, multiclass
        clus
vv       KIAA0586 MUTATED KIAA0586 WILD-TYPE
  CLUS_1                8                149
  CLUS_2                1                 62
  CLUS_3                1                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0586 MUTATED        3      1      2      1      0      1
  KIAA0586 WILD-TYPE     30     18     57     38     16     44
D654V9, multiclass
        clus
vv       KIAA0586 MUTATED KIAA0586 WILD-TYPE
  CLUS_1                3                 30
  CLUS_2                1                 18
  CLUS_3                2                 57
  CLUS_4                1                 38
  CLUS_5                0                 16
  CLUS_6                1                 44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0586 MUTATED        3      0      2      2      0      1
  KIAA0586 WILD-TYPE     44     39     33     30     23     34
D654V10, multiclass
        clus
vv       KIAA0586 MUTATED KIAA0586 WILD-TYPE
  CLUS_1                3                 44
  CLUS_2                0                 39
  CLUS_3                2                 33
  CLUS_4                2                 30
  CLUS_5                0                 23
  CLUS_6                1                 34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(655) Variable = PPM1H MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPM1H MUTATED        0      6      0      2      0
  PPM1H WILD-TYPE     79    120     27     41     12
D655V1, multiclass
        clus
vv       PPM1H MUTATED PPM1H WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             2              41
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPM1H MUTATED        1      3      1      0
  PPM1H WILD-TYPE     70     73     33     63
D655V2, multiclass
        clus
vv       PPM1H MUTATED PPM1H WILD-TYPE
  CLUS_1             1              70
  CLUS_2             3              73
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPM1H MUTATED        0      3      1      0      4
  PPM1H WILD-TYPE     16     59     50     65     51
D655V3, multiclass
        clus
vv       PPM1H MUTATED PPM1H WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              59
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPM1H MUTATED        0      8      0      0
  PPM1H WILD-TYPE     98     36     50     57
D655V4, multiclass
        clus
vv       PPM1H MUTATED PPM1H WILD-TYPE
  CLUS_1             0              98
  CLUS_2             8              36
  CLUS_3             0              50
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPM1H MUTATED        4      0      2      1      0
  PPM1H WILD-TYPE     58     59     38     36     59
D655V5, multiclass
        clus
vv       PPM1H MUTATED PPM1H WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             2              38
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PPM1H MUTATED        2      0      5
  PPM1H WILD-TYPE    104     54     92
D655V6, multiclass
        clus
vv       PPM1H MUTATED PPM1H WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PPM1H MUTATED        7      0      1
  PPM1H WILD-TYPE    116     95     70
D655V7, multiclass
        clus
vv       PPM1H MUTATED PPM1H WILD-TYPE
  CLUS_1             7             116
  CLUS_2             0              95
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PPM1H MUTATED        8      0      0
  PPM1H WILD-TYPE    149     63     69
D655V8, multiclass
        clus
vv       PPM1H MUTATED PPM1H WILD-TYPE
  CLUS_1             8             149
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPM1H MUTATED        1      1      0      2      0      0
  PPM1H WILD-TYPE     32     18     59     37     16     45
D655V9, multiclass
        clus
vv       PPM1H MUTATED PPM1H WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             0              59
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPM1H MUTATED        3      0      0      1      0      0
  PPM1H WILD-TYPE     44     39     35     31     23     35
D655V10, multiclass
        clus
vv       PPM1H MUTATED PPM1H WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             0              35
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(656) Variable = COL20A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL20A1 MUTATED        2     12      2      1      1
  COL20A1 WILD-TYPE     77    114     25     42     11
D656V1, multiclass
        clus
vv       COL20A1 MUTATED COL20A1 WILD-TYPE
  CLUS_1               2                77
  CLUS_2              12               114
  CLUS_3               2                25
  CLUS_4               1                42
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL20A1 MUTATED        2     11      0      3
  COL20A1 WILD-TYPE     69     65     34     60
D656V2, multiclass
        clus
vv       COL20A1 MUTATED COL20A1 WILD-TYPE
  CLUS_1               2                69
  CLUS_2              11                65
  CLUS_3               0                34
  CLUS_4               3                60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL20A1 MUTATED        0      7      2      1      5
  COL20A1 WILD-TYPE     16     55     49     64     50
D656V3, multiclass
        clus
vv       COL20A1 MUTATED COL20A1 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               7                55
  CLUS_3               2                49
  CLUS_4               1                64
  CLUS_5               5                50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL20A1 MUTATED        3      7      4      1
  COL20A1 WILD-TYPE     95     37     46     56
D656V4, multiclass
        clus
vv       COL20A1 MUTATED COL20A1 WILD-TYPE
  CLUS_1               3                95
  CLUS_2               7                37
  CLUS_3               4                46
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL20A1 MUTATED        9      3      0      2      2
  COL20A1 WILD-TYPE     53     56     40     35     57
D656V5, multiclass
        clus
vv       COL20A1 MUTATED COL20A1 WILD-TYPE
  CLUS_1               9                53
  CLUS_2               3                56
  CLUS_3               0                40
  CLUS_4               2                35
  CLUS_5               2                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL20A1 MUTATED        3      4      9
  COL20A1 WILD-TYPE    103     50     88
D656V6, multiclass
        clus
vv       COL20A1 MUTATED COL20A1 WILD-TYPE
  CLUS_1               3               103
  CLUS_2               4                50
  CLUS_3               9                88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL20A1 MUTATED       11      4      3
  COL20A1 WILD-TYPE    112     91     68
D656V7, multiclass
        clus
vv       COL20A1 MUTATED COL20A1 WILD-TYPE
  CLUS_1              11               112
  CLUS_2               4                91
  CLUS_3               3                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL20A1 MUTATED       12      4      2
  COL20A1 WILD-TYPE    145     59     67
D656V8, multiclass
        clus
vv       COL20A1 MUTATED COL20A1 WILD-TYPE
  CLUS_1              12               145
  CLUS_2               4                59
  CLUS_3               2                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  COL20A1 MUTATED        4      2      3      4      0      3
  COL20A1 WILD-TYPE     29     17     56     35     16     42
D656V9, multiclass
        clus
vv       COL20A1 MUTATED COL20A1 WILD-TYPE
  CLUS_1               4                29
  CLUS_2               2                17
  CLUS_3               3                56
  CLUS_4               4                35
  CLUS_5               0                16
  CLUS_6               3                42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  COL20A1 MUTATED        5      3      3      2      1      2
  COL20A1 WILD-TYPE     42     36     32     30     22     33
D656V10, multiclass
        clus
vv       COL20A1 MUTATED COL20A1 WILD-TYPE
  CLUS_1               5                42
  CLUS_2               3                36
  CLUS_3               3                32
  CLUS_4               2                30
  CLUS_5               1                22
  CLUS_6               2                33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(657) Variable = KIF6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF6 MUTATED        0      5      1      0      0
  KIF6 WILD-TYPE     79    121     26     43     12
D657V1, multiclass
        clus
vv       KIF6 MUTATED KIF6 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            5            121
  CLUS_3            1             26
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF6 MUTATED        1      3      1      0
  KIF6 WILD-TYPE     70     73     33     63
D657V2, multiclass
        clus
vv       KIF6 MUTATED KIF6 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            3             73
  CLUS_3            1             33
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF6 MUTATED        0      0      3      0      3
  KIF6 WILD-TYPE     16     62     48     65     52
D657V3, multiclass
        clus
vv       KIF6 MUTATED KIF6 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            0             62
  CLUS_3            3             48
  CLUS_4            0             65
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF6 MUTATED        3      2      0      1
  KIF6 WILD-TYPE     95     42     50     56
D657V4, multiclass
        clus
vv       KIF6 MUTATED KIF6 WILD-TYPE
  CLUS_1            3             95
  CLUS_2            2             42
  CLUS_3            0             50
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF6 MUTATED        4      2      0      1      0
  KIF6 WILD-TYPE     58     57     40     36     59
D657V5, multiclass
        clus
vv       KIF6 MUTATED KIF6 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            2             57
  CLUS_3            0             40
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KIF6 MUTATED        2      2      3
  KIF6 WILD-TYPE    104     52     94
D657V6, multiclass
        clus
vv       KIF6 MUTATED KIF6 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            2             52
  CLUS_3            3             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KIF6 MUTATED        4      3      0
  KIF6 WILD-TYPE    119     92     71
D657V7, multiclass
        clus
vv       KIF6 MUTATED KIF6 WILD-TYPE
  CLUS_1            4            119
  CLUS_2            3             92
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KIF6 MUTATED        4      3      0
  KIF6 WILD-TYPE    153     60     69
D657V8, multiclass
        clus
vv       KIF6 MUTATED KIF6 WILD-TYPE
  CLUS_1            4            153
  CLUS_2            3             60
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIF6 MUTATED        1      0      1      0      0      2
  KIF6 WILD-TYPE     32     19     58     39     16     43
D657V9, multiclass
        clus
vv       KIF6 MUTATED KIF6 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             19
  CLUS_3            1             58
  CLUS_4            0             39
  CLUS_5            0             16
  CLUS_6            2             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIF6 MUTATED        1      1      1      0      1      0
  KIF6 WILD-TYPE     46     38     34     32     22     35
D657V10, multiclass
        clus
vv       KIF6 MUTATED KIF6 WILD-TYPE
  CLUS_1            1             46
  CLUS_2            1             38
  CLUS_3            1             34
  CLUS_4            0             32
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(658) Variable = POMT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POMT1 MUTATED        0      9      1      1      1
  POMT1 WILD-TYPE     79    117     26     42     11
D658V1, multiclass
        clus
vv       POMT1 MUTATED POMT1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             9             117
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POMT1 MUTATED        0      7      2      2
  POMT1 WILD-TYPE     71     69     32     61
D658V2, multiclass
        clus
vv       POMT1 MUTATED POMT1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             7              69
  CLUS_3             2              32
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POMT1 MUTATED        1      4      0      1      2
  POMT1 WILD-TYPE     15     58     51     64     53
D658V3, multiclass
        clus
vv       POMT1 MUTATED POMT1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             4              58
  CLUS_3             0              51
  CLUS_4             1              64
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POMT1 MUTATED        1      4      2      1
  POMT1 WILD-TYPE     97     40     48     56
D658V4, multiclass
        clus
vv       POMT1 MUTATED POMT1 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             4              40
  CLUS_3             2              48
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POMT1 MUTATED        9      0      1      1      0
  POMT1 WILD-TYPE     53     59     39     36     59
D658V5, multiclass
        clus
vv       POMT1 MUTATED POMT1 WILD-TYPE
  CLUS_1             9              53
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  POMT1 MUTATED        3      0      8
  POMT1 WILD-TYPE    103     54     89
D658V6, multiclass
        clus
vv       POMT1 MUTATED POMT1 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  POMT1 MUTATED       10      1      1
  POMT1 WILD-TYPE    113     94     70
D658V7, multiclass
        clus
vv       POMT1 MUTATED POMT1 WILD-TYPE
  CLUS_1            10             113
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  POMT1 MUTATED       11      1      0
  POMT1 WILD-TYPE    146     62     69
D658V8, multiclass
        clus
vv       POMT1 MUTATED POMT1 WILD-TYPE
  CLUS_1            11             146
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  POMT1 MUTATED        1      2      4      3      0      0
  POMT1 WILD-TYPE     32     17     55     36     16     45
D658V9, multiclass
        clus
vv       POMT1 MUTATED POMT1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              17
  CLUS_3             4              55
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  POMT1 MUTATED        4      0      4      1      1      0
  POMT1 WILD-TYPE     43     39     31     31     22     35
D658V10, multiclass
        clus
vv       POMT1 MUTATED POMT1 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             0              39
  CLUS_3             4              31
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(659) Variable = MYO7A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYO7A MUTATED        1      9      1      3      0
  MYO7A WILD-TYPE     78    117     26     40     12
D659V1, multiclass
        clus
vv       MYO7A MUTATED MYO7A WILD-TYPE
  CLUS_1             1              78
  CLUS_2             9             117
  CLUS_3             1              26
  CLUS_4             3              40
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO7A MUTATED        3      9      1      0
  MYO7A WILD-TYPE     68     67     33     63
D659V2, multiclass
        clus
vv       MYO7A MUTATED MYO7A WILD-TYPE
  CLUS_1             3              68
  CLUS_2             9              67
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYO7A MUTATED        0      3      6      0      3
  MYO7A WILD-TYPE     16     59     45     65     52
D659V3, multiclass
        clus
vv       MYO7A MUTATED MYO7A WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              59
  CLUS_3             6              45
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO7A MUTATED        3      7      1      1
  MYO7A WILD-TYPE     95     37     49     56
D659V4, multiclass
        clus
vv       MYO7A MUTATED MYO7A WILD-TYPE
  CLUS_1             3              95
  CLUS_2             7              37
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYO7A MUTATED        4      3      1      6      0
  MYO7A WILD-TYPE     58     56     39     31     59
D659V5, multiclass
        clus
vv       MYO7A MUTATED MYO7A WILD-TYPE
  CLUS_1             4              58
  CLUS_2             3              56
  CLUS_3             1              39
  CLUS_4             6              31
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYO7A MUTATED        2      3      9
  MYO7A WILD-TYPE    104     51     88
D659V6, multiclass
        clus
vv       MYO7A MUTATED MYO7A WILD-TYPE
  CLUS_1             2             104
  CLUS_2             3              51
  CLUS_3             9              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYO7A MUTATED       10      3      2
  MYO7A WILD-TYPE    113     92     69
D659V7, multiclass
        clus
vv       MYO7A MUTATED MYO7A WILD-TYPE
  CLUS_1            10             113
  CLUS_2             3              92
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYO7A MUTATED       12      1      2
  MYO7A WILD-TYPE    145     62     67
D659V8, multiclass
        clus
vv       MYO7A MUTATED MYO7A WILD-TYPE
  CLUS_1            12             145
  CLUS_2             1              62
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MYO7A MUTATED        3      4      1      2      0      1
  MYO7A WILD-TYPE     30     15     58     37     16     44
D659V9, multiclass
        clus
vv       MYO7A MUTATED MYO7A WILD-TYPE
  CLUS_1             3              30
  CLUS_2             4              15
  CLUS_3             1              58
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MYO7A MUTATED        5      1      0      3      1      1
  MYO7A WILD-TYPE     42     38     35     29     22     34
D659V10, multiclass
        clus
vv       MYO7A MUTATED MYO7A WILD-TYPE
  CLUS_1             5              42
  CLUS_2             1              38
  CLUS_3             0              35
  CLUS_4             3              29
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(660) Variable = EPB41L5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB41L5 MUTATED        0      7      1      0      0
  EPB41L5 WILD-TYPE     79    119     26     43     12
D660V1, multiclass
        clus
vv       EPB41L5 MUTATED EPB41L5 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               7               119
  CLUS_3               1                26
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPB41L5 MUTATED        1      5      1      0
  EPB41L5 WILD-TYPE     70     71     33     63
D660V2, multiclass
        clus
vv       EPB41L5 MUTATED EPB41L5 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               5                71
  CLUS_3               1                33
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB41L5 MUTATED        0      3      2      0      2
  EPB41L5 WILD-TYPE     16     59     49     65     53
D660V3, multiclass
        clus
vv       EPB41L5 MUTATED EPB41L5 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               3                59
  CLUS_3               2                49
  CLUS_4               0                65
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPB41L5 MUTATED        0      5      2      0
  EPB41L5 WILD-TYPE     98     39     48     57
D660V4, multiclass
        clus
vv       EPB41L5 MUTATED EPB41L5 WILD-TYPE
  CLUS_1               0                98
  CLUS_2               5                39
  CLUS_3               2                48
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB41L5 MUTATED        5      0      1      1      0
  EPB41L5 WILD-TYPE     57     59     39     36     59
D660V5, multiclass
        clus
vv       EPB41L5 MUTATED EPB41L5 WILD-TYPE
  CLUS_1               5                57
  CLUS_2               0                59
  CLUS_3               1                39
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EPB41L5 MUTATED        0      0      7
  EPB41L5 WILD-TYPE    106     54     90
D660V6, multiclass
        clus
vv       EPB41L5 MUTATED EPB41L5 WILD-TYPE
  CLUS_1               0               106
  CLUS_2               0                54
  CLUS_3               7                90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EPB41L5 MUTATED        7      1      0
  EPB41L5 WILD-TYPE    116     94     71
D660V7, multiclass
        clus
vv       EPB41L5 MUTATED EPB41L5 WILD-TYPE
  CLUS_1               7               116
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EPB41L5 MUTATED        8      0      0
  EPB41L5 WILD-TYPE    149     63     69
D660V8, multiclass
        clus
vv       EPB41L5 MUTATED EPB41L5 WILD-TYPE
  CLUS_1               8               149
  CLUS_2               0                63
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPB41L5 MUTATED        1      3      2      1      0      0
  EPB41L5 WILD-TYPE     32     16     57     38     16     45
D660V9, multiclass
        clus
vv       EPB41L5 MUTATED EPB41L5 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               3                16
  CLUS_3               2                57
  CLUS_4               1                38
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPB41L5 MUTATED        3      0      2      1      1      0
  EPB41L5 WILD-TYPE     44     39     33     31     22     35
D660V10, multiclass
        clus
vv       EPB41L5 MUTATED EPB41L5 WILD-TYPE
  CLUS_1               3                44
  CLUS_2               0                39
  CLUS_3               2                33
  CLUS_4               1                31
  CLUS_5               1                22
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(661) Variable = MAGEE2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAGEE2 MUTATED        0      3      2      3      0
  MAGEE2 WILD-TYPE     79    123     25     40     12
D661V1, multiclass
        clus
vv       MAGEE2 MUTATED MAGEE2 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              3              123
  CLUS_3              2               25
  CLUS_4              3               40
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEE2 MUTATED        0      5      1      1
  MAGEE2 WILD-TYPE     71     71     33     62
D661V2, multiclass
        clus
vv       MAGEE2 MUTATED MAGEE2 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              5               71
  CLUS_3              1               33
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAGEE2 MUTATED        1      3      1      2      1
  MAGEE2 WILD-TYPE     15     59     50     63     54
D661V3, multiclass
        clus
vv       MAGEE2 MUTATED MAGEE2 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              3               59
  CLUS_3              1               50
  CLUS_4              2               63
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEE2 MUTATED        3      2      2      1
  MAGEE2 WILD-TYPE     95     42     48     56
D661V4, multiclass
        clus
vv       MAGEE2 MUTATED MAGEE2 WILD-TYPE
  CLUS_1              3               95
  CLUS_2              2               42
  CLUS_3              2               48
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAGEE2 MUTATED        2      2      2      0      0
  MAGEE2 WILD-TYPE     60     57     38     37     59
D661V5, multiclass
        clus
vv       MAGEE2 MUTATED MAGEE2 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              2               57
  CLUS_3              2               38
  CLUS_4              0               37
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEE2 MUTATED        0      2      4
  MAGEE2 WILD-TYPE    106     52     93
D661V6, multiclass
        clus
vv       MAGEE2 MUTATED MAGEE2 WILD-TYPE
  CLUS_1              0              106
  CLUS_2              2               52
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEE2 MUTATED        5      3      0
  MAGEE2 WILD-TYPE    118     92     71
D661V7, multiclass
        clus
vv       MAGEE2 MUTATED MAGEE2 WILD-TYPE
  CLUS_1              5              118
  CLUS_2              3               92
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEE2 MUTATED        6      1      1
  MAGEE2 WILD-TYPE    151     62     68
D661V8, multiclass
        clus
vv       MAGEE2 MUTATED MAGEE2 WILD-TYPE
  CLUS_1              6              151
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAGEE2 MUTATED        0      0      2      1      0      3
  MAGEE2 WILD-TYPE     33     19     57     38     16     42
D661V9, multiclass
        clus
vv       MAGEE2 MUTATED MAGEE2 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               19
  CLUS_3              2               57
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              3               42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAGEE2 MUTATED        2      2      1      1      0      0
  MAGEE2 WILD-TYPE     45     37     34     31     23     35
D661V10, multiclass
        clus
vv       MAGEE2 MUTATED MAGEE2 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              2               37
  CLUS_3              1               34
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(662) Variable = ARHGAP29 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGAP29 MUTATED        1      7      0      0      1
  ARHGAP29 WILD-TYPE     78    119     27     43     11
D662V1, multiclass
        clus
vv       ARHGAP29 MUTATED ARHGAP29 WILD-TYPE
  CLUS_1                1                 78
  CLUS_2                7                119
  CLUS_3                0                 27
  CLUS_4                0                 43
  CLUS_5                1                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP29 MUTATED        1      6      0      0
  ARHGAP29 WILD-TYPE     70     70     34     63
D662V2, multiclass
        clus
vv       ARHGAP29 MUTATED ARHGAP29 WILD-TYPE
  CLUS_1                1                 70
  CLUS_2                6                 70
  CLUS_3                0                 34
  CLUS_4                0                 63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGAP29 MUTATED        0      5      1      0      1
  ARHGAP29 WILD-TYPE     16     57     50     65     54
D662V3, multiclass
        clus
vv       ARHGAP29 MUTATED ARHGAP29 WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                5                 57
  CLUS_3                1                 50
  CLUS_4                0                 65
  CLUS_5                1                 54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP29 MUTATED        0      3      4      0
  ARHGAP29 WILD-TYPE     98     41     46     57
D662V4, multiclass
        clus
vv       ARHGAP29 MUTATED ARHGAP29 WILD-TYPE
  CLUS_1                0                 98
  CLUS_2                3                 41
  CLUS_3                4                 46
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGAP29 MUTATED        5      0      1      2      1
  ARHGAP29 WILD-TYPE     57     59     39     35     58
D662V5, multiclass
        clus
vv       ARHGAP29 MUTATED ARHGAP29 WILD-TYPE
  CLUS_1                5                 57
  CLUS_2                0                 59
  CLUS_3                1                 39
  CLUS_4                2                 35
  CLUS_5                1                 58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP29 MUTATED        1      0      8
  ARHGAP29 WILD-TYPE    105     54     89
D662V6, multiclass
        clus
vv       ARHGAP29 MUTATED ARHGAP29 WILD-TYPE
  CLUS_1                1                105
  CLUS_2                0                 54
  CLUS_3                8                 89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP29 MUTATED        7      0      2
  ARHGAP29 WILD-TYPE    116     95     69
D662V7, multiclass
        clus
vv       ARHGAP29 MUTATED ARHGAP29 WILD-TYPE
  CLUS_1                7                116
  CLUS_2                0                 95
  CLUS_3                2                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP29 MUTATED        8      0      1
  ARHGAP29 WILD-TYPE    149     63     68
D662V8, multiclass
        clus
vv       ARHGAP29 MUTATED ARHGAP29 WILD-TYPE
  CLUS_1                8                149
  CLUS_2                0                 63
  CLUS_3                1                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARHGAP29 MUTATED        2      1      2      1      0      0
  ARHGAP29 WILD-TYPE     31     18     57     38     16     45
D662V9, multiclass
        clus
vv       ARHGAP29 MUTATED ARHGAP29 WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                1                 18
  CLUS_3                2                 57
  CLUS_4                1                 38
  CLUS_5                0                 16
  CLUS_6                0                 45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARHGAP29 MUTATED        4      0      1      1      0      0
  ARHGAP29 WILD-TYPE     43     39     34     31     23     35
D662V10, multiclass
        clus
vv       ARHGAP29 MUTATED ARHGAP29 WILD-TYPE
  CLUS_1                4                 43
  CLUS_2                0                 39
  CLUS_3                1                 34
  CLUS_4                1                 31
  CLUS_5                0                 23
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(663) Variable = SLC23A3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC23A3 MUTATED        1      3      0      1      0
  SLC23A3 WILD-TYPE     78    123     27     42     12
D663V1, multiclass
        clus
vv       SLC23A3 MUTATED SLC23A3 WILD-TYPE
  CLUS_1               1                78
  CLUS_2               3               123
  CLUS_3               0                27
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC23A3 MUTATED        1      2      1      0
  SLC23A3 WILD-TYPE     70     74     33     63
D663V2, multiclass
        clus
vv       SLC23A3 MUTATED SLC23A3 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               2                74
  CLUS_3               1                33
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC23A3 MUTATED        0      2      0      0      3
  SLC23A3 WILD-TYPE     16     60     51     65     52
D663V3, multiclass
        clus
vv       SLC23A3 MUTATED SLC23A3 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               2                60
  CLUS_3               0                51
  CLUS_4               0                65
  CLUS_5               3                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC23A3 MUTATED        1      4      0      0
  SLC23A3 WILD-TYPE     97     40     50     57
D663V4, multiclass
        clus
vv       SLC23A3 MUTATED SLC23A3 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               4                40
  CLUS_3               0                50
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC23A3 MUTATED        2      0      1      1      1
  SLC23A3 WILD-TYPE     60     59     39     36     58
D663V5, multiclass
        clus
vv       SLC23A3 MUTATED SLC23A3 WILD-TYPE
  CLUS_1               2                60
  CLUS_2               0                59
  CLUS_3               1                39
  CLUS_4               1                36
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC23A3 MUTATED        2      0      3
  SLC23A3 WILD-TYPE    104     54     94
D663V6, multiclass
        clus
vv       SLC23A3 MUTATED SLC23A3 WILD-TYPE
  CLUS_1               2               104
  CLUS_2               0                54
  CLUS_3               3                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC23A3 MUTATED        3      0      2
  SLC23A3 WILD-TYPE    120     95     69
D663V7, multiclass
        clus
vv       SLC23A3 MUTATED SLC23A3 WILD-TYPE
  CLUS_1               3               120
  CLUS_2               0                95
  CLUS_3               2                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC23A3 MUTATED        5      0      0
  SLC23A3 WILD-TYPE    152     63     69
D663V8, multiclass
        clus
vv       SLC23A3 MUTATED SLC23A3 WILD-TYPE
  CLUS_1               5               152
  CLUS_2               0                63
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC23A3 MUTATED        0      0      1      3      0      0
  SLC23A3 WILD-TYPE     33     19     58     36     16     45
D663V9, multiclass
        clus
vv       SLC23A3 MUTATED SLC23A3 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               0                19
  CLUS_3               1                58
  CLUS_4               3                36
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC23A3 MUTATED        2      0      1      1      0      0
  SLC23A3 WILD-TYPE     45     39     34     31     23     35
D663V10, multiclass
        clus
vv       SLC23A3 MUTATED SLC23A3 WILD-TYPE
  CLUS_1               2                45
  CLUS_2               0                39
  CLUS_3               1                34
  CLUS_4               1                31
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(664) Variable = WDR60 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR60 MUTATED        0      6      2      0      0
  WDR60 WILD-TYPE     79    120     25     43     12
D664V1, multiclass
        clus
vv       WDR60 MUTATED WDR60 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             2              25
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR60 MUTATED        0      4      2      0
  WDR60 WILD-TYPE     71     72     32     63
D664V2, multiclass
        clus
vv       WDR60 MUTATED WDR60 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             4              72
  CLUS_3             2              32
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR60 MUTATED        0      2      1      1      3
  WDR60 WILD-TYPE     16     60     50     64     52
D664V3, multiclass
        clus
vv       WDR60 MUTATED WDR60 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             1              50
  CLUS_4             1              64
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR60 MUTATED        0      4      2      1
  WDR60 WILD-TYPE     98     40     48     56
D664V4, multiclass
        clus
vv       WDR60 MUTATED WDR60 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             4              40
  CLUS_3             2              48
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR60 MUTATED        4      1      0      2      0
  WDR60 WILD-TYPE     58     58     40     35     59
D664V5, multiclass
        clus
vv       WDR60 MUTATED WDR60 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR60 MUTATED        1      1      5
  WDR60 WILD-TYPE    105     53     92
D664V6, multiclass
        clus
vv       WDR60 MUTATED WDR60 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             1              53
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR60 MUTATED        6      2      0
  WDR60 WILD-TYPE    117     93     71
D664V7, multiclass
        clus
vv       WDR60 MUTATED WDR60 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR60 MUTATED        7      1      0
  WDR60 WILD-TYPE    150     62     69
D664V8, multiclass
        clus
vv       WDR60 MUTATED WDR60 WILD-TYPE
  CLUS_1             7             150
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WDR60 MUTATED        1      3      1      0      0      1
  WDR60 WILD-TYPE     32     16     58     39     16     44
D664V9, multiclass
        clus
vv       WDR60 MUTATED WDR60 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             3              16
  CLUS_3             1              58
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WDR60 MUTATED        2      1      1      2      0      0
  WDR60 WILD-TYPE     45     38     34     30     23     35
D664V10, multiclass
        clus
vv       WDR60 MUTATED WDR60 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             1              38
  CLUS_3             1              34
  CLUS_4             2              30
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(665) Variable = GCDH MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GCDH MUTATED        0      7      0      1      0
  GCDH WILD-TYPE     79    119     27     42     12
D665V1, multiclass
        clus
vv       GCDH MUTATED GCDH WILD-TYPE
  CLUS_1            0             79
  CLUS_2            7            119
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GCDH MUTATED        0      3      0      2
  GCDH WILD-TYPE     71     73     34     61
D665V2, multiclass
        clus
vv       GCDH MUTATED GCDH WILD-TYPE
  CLUS_1            0             71
  CLUS_2            3             73
  CLUS_3            0             34
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GCDH MUTATED        0      3      1      0      4
  GCDH WILD-TYPE     16     59     50     65     51
D665V3, multiclass
        clus
vv       GCDH MUTATED GCDH WILD-TYPE
  CLUS_1            0             16
  CLUS_2            3             59
  CLUS_3            1             50
  CLUS_4            0             65
  CLUS_5            4             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GCDH MUTATED        2      5      1      0
  GCDH WILD-TYPE     96     39     49     57
D665V4, multiclass
        clus
vv       GCDH MUTATED GCDH WILD-TYPE
  CLUS_1            2             96
  CLUS_2            5             39
  CLUS_3            1             49
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GCDH MUTATED        5      0      1      0      0
  GCDH WILD-TYPE     57     59     39     37     59
D665V5, multiclass
        clus
vv       GCDH MUTATED GCDH WILD-TYPE
  CLUS_1            5             57
  CLUS_2            0             59
  CLUS_3            1             39
  CLUS_4            0             37
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GCDH MUTATED        1      0      5
  GCDH WILD-TYPE    105     54     92
D665V6, multiclass
        clus
vv       GCDH MUTATED GCDH WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GCDH MUTATED        8      0      0
  GCDH WILD-TYPE    115     95     71
D665V7, multiclass
        clus
vv       GCDH MUTATED GCDH WILD-TYPE
  CLUS_1            8            115
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GCDH MUTATED        6      1      1
  GCDH WILD-TYPE    151     62     68
D665V8, multiclass
        clus
vv       GCDH MUTATED GCDH WILD-TYPE
  CLUS_1            6            151
  CLUS_2            1             62
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GCDH MUTATED        1      0      2      1      0      0
  GCDH WILD-TYPE     32     19     57     38     16     45
D665V9, multiclass
        clus
vv       GCDH MUTATED GCDH WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             19
  CLUS_3            2             57
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GCDH MUTATED        2      0      2      0      0      0
  GCDH WILD-TYPE     45     39     33     32     23     35
D665V10, multiclass
        clus
vv       GCDH MUTATED GCDH WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            2             33
  CLUS_4            0             32
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(666) Variable = PLEKHH3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHH3 MUTATED        0      7      1      0      1
  PLEKHH3 WILD-TYPE     79    119     26     43     11
D666V1, multiclass
        clus
vv       PLEKHH3 MUTATED PLEKHH3 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               7               119
  CLUS_3               1                26
  CLUS_4               0                43
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHH3 MUTATED        1      4      0      2
  PLEKHH3 WILD-TYPE     70     72     34     61
D666V2, multiclass
        clus
vv       PLEKHH3 MUTATED PLEKHH3 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               4                72
  CLUS_3               0                34
  CLUS_4               2                61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHH3 MUTATED        2      4      1      0      1
  PLEKHH3 WILD-TYPE     14     58     50     65     54
D666V3, multiclass
        clus
vv       PLEKHH3 MUTATED PLEKHH3 WILD-TYPE
  CLUS_1               2                14
  CLUS_2               4                58
  CLUS_3               1                50
  CLUS_4               0                65
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHH3 MUTATED        3      3      2      0
  PLEKHH3 WILD-TYPE     95     41     48     57
D666V4, multiclass
        clus
vv       PLEKHH3 MUTATED PLEKHH3 WILD-TYPE
  CLUS_1               3                95
  CLUS_2               3                41
  CLUS_3               2                48
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHH3 MUTATED        5      0      0      2      0
  PLEKHH3 WILD-TYPE     57     59     40     35     59
D666V5, multiclass
        clus
vv       PLEKHH3 MUTATED PLEKHH3 WILD-TYPE
  CLUS_1               5                57
  CLUS_2               0                59
  CLUS_3               0                40
  CLUS_4               2                35
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHH3 MUTATED        2      0      5
  PLEKHH3 WILD-TYPE    104     54     92
D666V6, multiclass
        clus
vv       PLEKHH3 MUTATED PLEKHH3 WILD-TYPE
  CLUS_1               2               104
  CLUS_2               0                54
  CLUS_3               5                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHH3 MUTATED        9      0      0
  PLEKHH3 WILD-TYPE    114     95     71
D666V7, multiclass
        clus
vv       PLEKHH3 MUTATED PLEKHH3 WILD-TYPE
  CLUS_1               9               114
  CLUS_2               0                95
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHH3 MUTATED        7      1      1
  PLEKHH3 WILD-TYPE    150     62     68
D666V8, multiclass
        clus
vv       PLEKHH3 MUTATED PLEKHH3 WILD-TYPE
  CLUS_1               7               150
  CLUS_2               1                62
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLEKHH3 MUTATED        0      1      5      1      0      0
  PLEKHH3 WILD-TYPE     33     18     54     38     16     45
D666V9, multiclass
        clus
vv       PLEKHH3 MUTATED PLEKHH3 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                18
  CLUS_3               5                54
  CLUS_4               1                38
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLEKHH3 MUTATED        5      0      2      0      0      0
  PLEKHH3 WILD-TYPE     42     39     33     32     23     35
D666V10, multiclass
        clus
vv       PLEKHH3 MUTATED PLEKHH3 WILD-TYPE
  CLUS_1               5                42
  CLUS_2               0                39
  CLUS_3               2                33
  CLUS_4               0                32
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(667) Variable = KRT222 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT222 MUTATED        1      3      0      0      1
  KRT222 WILD-TYPE     78    123     27     43     11
D667V1, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              3              123
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT222 MUTATED        1      2      0      0
  KRT222 WILD-TYPE     70     74     34     63
D667V2, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              2               74
  CLUS_3              0               34
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT222 MUTATED        0      1      1      0      2
  KRT222 WILD-TYPE     16     61     50     65     53
D667V3, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              1               61
  CLUS_3              1               50
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT222 MUTATED        2      2      0      0
  KRT222 WILD-TYPE     96     42     50     57
D667V4, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              2               42
  CLUS_3              0               50
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT222 MUTATED        2      0      1      0      1
  KRT222 WILD-TYPE     60     59     39     37     58
D667V5, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              0               37
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KRT222 MUTATED        0      0      4
  KRT222 WILD-TYPE    106     54     93
D667V6, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              0              106
  CLUS_2              0               54
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KRT222 MUTATED        4      0      1
  KRT222 WILD-TYPE    119     95     70
D667V7, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              4              119
  CLUS_2              0               95
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KRT222 MUTATED        4      0      1
  KRT222 WILD-TYPE    153     63     68
D667V8, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              4              153
  CLUS_2              0               63
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRT222 MUTATED        1      0      1      1      0      0
  KRT222 WILD-TYPE     32     19     58     38     16     45
D667V9, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              0               19
  CLUS_3              1               58
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRT222 MUTATED        1      0      1      1      0      0
  KRT222 WILD-TYPE     46     39     34     31     23     35
D667V10, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(668) Variable = MBL2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBL2 MUTATED        0      4      0      0      0
  MBL2 WILD-TYPE     79    122     27     43     12
D668V1, multiclass
        clus
vv       MBL2 MUTATED MBL2 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            4            122
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBL2 MUTATED        0      2      0      1
  MBL2 WILD-TYPE     71     74     34     62
D668V2, multiclass
        clus
vv       MBL2 MUTATED MBL2 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            2             74
  CLUS_3            0             34
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBL2 MUTATED        0      1      0      0      1
  MBL2 WILD-TYPE     16     61     51     65     54
D668V3, multiclass
[1] "Remove cluster labels:" "MBL2 MUTATED"          
clus
  MBL2 MUTATED MBL2 WILD-TYPE 
             2            247 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-4187     TCGA-BR-4188     TCGA-BR-4191     TCGA-BR-4201 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-4253     TCGA-BR-4255     TCGA-BR-4256     TCGA-BR-4257 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280     TCGA-BR-4292 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-4294     TCGA-BR-4357     TCGA-BR-4362     TCGA-BR-4363 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-4366     TCGA-BR-4368     TCGA-BR-4369     TCGA-BR-4370 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-4371     TCGA-BR-6452     TCGA-BR-6453     TCGA-BR-6454 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457     TCGA-BR-6458 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566     TCGA-BR-6705 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6710     TCGA-BR-6801 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7715     TCGA-BR-7716 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723     TCGA-BR-7851 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8080     TCGA-BR-8081 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289     TCGA-BR-8291 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8297     TCGA-BR-8360 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368     TCGA-BR-8369 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8380 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8484     TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8589     TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8592 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8676     TCGA-BR-8677     TCGA-BR-8678     TCGA-BR-8679 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8680     TCGA-BR-8682     TCGA-BR-8683     TCGA-BR-8686 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T     TCGA-BR-A44U 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J2     TCGA-BR-A4J4 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-A4PE     TCGA-BR-A4PF     TCGA-BR-A4QI     TCGA-BR-A4QL 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CD-8527     TCGA-CD-8528     TCGA-CD-8529     TCGA-CD-8530 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8534     TCGA-CD-8535 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CD-A48A     TCGA-CD-A48C     TCGA-CD-A4MG     TCGA-CD-A4MH 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300     TCGA-CG-4301 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4442     TCGA-CG-4443 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4465 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CG-4466     TCGA-CG-4469     TCGA-CG-4474     TCGA-CG-4475 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CG-4476     TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5724 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-D7-6525     TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-D7-8570     TCGA-D7-8572     TCGA-D7-8573     TCGA-D7-8574 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-D7-8575     TCGA-D7-8578     TCGA-D7-A4YT     TCGA-D7-A4YU 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YX     TCGA-D7-A4YY     TCGA-D7-A4Z0 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-EQ-8122     TCGA-EQ-A4SO     TCGA-F1-6177     TCGA-F1-6874 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7916     TCGA-FP-7998 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-HF-7132     TCGA-HF-7133     TCGA-HF-7136     TCGA-HJ-7597 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-HU-8602     TCGA-HU-8608     TCGA-HU-8610     TCGA-HU-A4GF 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-HU-A4GQ     TCGA-HU-A4GT     TCGA-HU-A4GU     TCGA-HU-A4GX 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-HU-A4GY     TCGA-HU-A4H2     TCGA-HU-A4H3     TCGA-HU-A4H4 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-HU-A4H5     TCGA-HU-A4HD     TCGA-IN-7806     TCGA-IN-7808 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-IN-8462     TCGA-IN-8663     TCGA-IP-7968 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBL2 MUTATED        0      1      1      0
  MBL2 WILD-TYPE     98     43     49     57
D668V4, multiclass
[1] "Remove cluster labels:" "MBL2 MUTATED"          
clus
  MBL2 MUTATED MBL2 WILD-TYPE 
             2            247 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-4187     TCGA-BR-4188     TCGA-BR-4191     TCGA-BR-4201 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-4253     TCGA-BR-4255     TCGA-BR-4256     TCGA-BR-4257 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280     TCGA-BR-4292 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-4294     TCGA-BR-4357     TCGA-BR-4362     TCGA-BR-4363 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-4366     TCGA-BR-4368     TCGA-BR-4369     TCGA-BR-4370 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-4371     TCGA-BR-6452     TCGA-BR-6453     TCGA-BR-6454 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457     TCGA-BR-6458 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566     TCGA-BR-6705 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6710     TCGA-BR-6801 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7715     TCGA-BR-7716 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723     TCGA-BR-7851 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8080     TCGA-BR-8081 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289     TCGA-BR-8291 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8297     TCGA-BR-8360 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368     TCGA-BR-8369 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8380 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8484     TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8589     TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8592 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8676     TCGA-BR-8677     TCGA-BR-8678     TCGA-BR-8679 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8680     TCGA-BR-8682     TCGA-BR-8683     TCGA-BR-8686 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T     TCGA-BR-A44U 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J2     TCGA-BR-A4J4 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-A4PE     TCGA-BR-A4PF     TCGA-BR-A4QI     TCGA-BR-A4QL 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CD-8527     TCGA-CD-8528     TCGA-CD-8529     TCGA-CD-8530 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8534     TCGA-CD-8535 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CD-A48A     TCGA-CD-A48C     TCGA-CD-A4MG     TCGA-CD-A4MH 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300     TCGA-CG-4301 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4442     TCGA-CG-4443 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4465 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CG-4466     TCGA-CG-4469     TCGA-CG-4474     TCGA-CG-4475 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CG-4476     TCGA-CG-4477     TCGA-CG-5717     TCGA-CG-5718 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5724 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-D7-6525     TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-D7-8570     TCGA-D7-8572     TCGA-D7-8573     TCGA-D7-8574 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-D7-8575     TCGA-D7-8578     TCGA-D7-A4YT     TCGA-D7-A4YU 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YX     TCGA-D7-A4YY     TCGA-D7-A4Z0 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-EQ-8122     TCGA-EQ-A4SO     TCGA-F1-6177     TCGA-F1-6874 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7916     TCGA-FP-7998 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-HF-7132     TCGA-HF-7133     TCGA-HF-7136     TCGA-HJ-7597 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-HU-8602     TCGA-HU-8608     TCGA-HU-8610     TCGA-HU-A4GF 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-HU-A4GQ     TCGA-HU-A4GT     TCGA-HU-A4GU     TCGA-HU-A4GX 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-HU-A4GY     TCGA-HU-A4H2     TCGA-HU-A4H3     TCGA-HU-A4H4 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-HU-A4H5     TCGA-HU-A4HD     TCGA-IN-7806     TCGA-IN-7808 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
    TCGA-IN-8462     TCGA-IN-8663     TCGA-IP-7968 
"MBL2 WILD-TYPE" "MBL2 WILD-TYPE" "MBL2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBL2 MUTATED        3      0      0      1      0
  MBL2 WILD-TYPE     59     59     40     36     59
D668V5, multiclass
        clus
vv       MBL2 MUTATED MBL2 WILD-TYPE
  CLUS_1            3             59
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBL2 MUTATED        1      0      3
  MBL2 WILD-TYPE    105     54     94
D668V6, multiclass
        clus
vv       MBL2 MUTATED MBL2 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            3             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBL2 MUTATED        4      0      0
  MBL2 WILD-TYPE    119     95     71
D668V7, multiclass
        clus
vv       MBL2 MUTATED MBL2 WILD-TYPE
  CLUS_1            4            119
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBL2 MUTATED        3      1      0
  MBL2 WILD-TYPE    154     62     69
D668V8, multiclass
        clus
vv       MBL2 MUTATED MBL2 WILD-TYPE
  CLUS_1            3            154
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MBL2 MUTATED        0      1      1      1      0      0
  MBL2 WILD-TYPE     33     18     58     38     16     45
D668V9, multiclass
        clus
vv       MBL2 MUTATED MBL2 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             18
  CLUS_3            1             58
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MBL2 MUTATED        2      0      1      0      0      0
  MBL2 WILD-TYPE     45     39     34     32     23     35
D668V10, multiclass
        clus
vv       MBL2 MUTATED MBL2 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            0             32
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(669) Variable = TSPYL5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSPYL5 MUTATED        0      7      1      1      0
  TSPYL5 WILD-TYPE     79    119     26     42     12
D669V1, multiclass
        clus
vv       TSPYL5 MUTATED TSPYL5 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              7              119
  CLUS_3              1               26
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSPYL5 MUTATED        0      5      2      1
  TSPYL5 WILD-TYPE     71     71     32     62
D669V2, multiclass
        clus
vv       TSPYL5 MUTATED TSPYL5 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              5               71
  CLUS_3              2               32
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSPYL5 MUTATED        1      3      0      1      2
  TSPYL5 WILD-TYPE     15     59     51     64     53
D669V3, multiclass
        clus
vv       TSPYL5 MUTATED TSPYL5 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              3               59
  CLUS_3              0               51
  CLUS_4              1               64
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSPYL5 MUTATED        2      1      3      1
  TSPYL5 WILD-TYPE     96     43     47     56
D669V4, multiclass
        clus
vv       TSPYL5 MUTATED TSPYL5 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              1               43
  CLUS_3              3               47
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSPYL5 MUTATED        5      1      1      2      0
  TSPYL5 WILD-TYPE     57     58     39     35     59
D669V5, multiclass
        clus
vv       TSPYL5 MUTATED TSPYL5 WILD-TYPE
  CLUS_1              5               57
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              2               35
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TSPYL5 MUTATED        3      0      6
  TSPYL5 WILD-TYPE    103     54     91
D669V6, multiclass
        clus
vv       TSPYL5 MUTATED TSPYL5 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              0               54
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TSPYL5 MUTATED        8      1      0
  TSPYL5 WILD-TYPE    115     94     71
D669V7, multiclass
        clus
vv       TSPYL5 MUTATED TSPYL5 WILD-TYPE
  CLUS_1              8              115
  CLUS_2              1               94
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TSPYL5 MUTATED        9      0      0
  TSPYL5 WILD-TYPE    148     63     69
D669V8, multiclass
        clus
vv       TSPYL5 MUTATED TSPYL5 WILD-TYPE
  CLUS_1              9              148
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TSPYL5 MUTATED        0      2      1      5      0      0
  TSPYL5 WILD-TYPE     33     17     58     34     16     45
D669V9, multiclass
        clus
vv       TSPYL5 MUTATED TSPYL5 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              2               17
  CLUS_3              1               58
  CLUS_4              5               34
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TSPYL5 MUTATED        2      0      1      2      3      0
  TSPYL5 WILD-TYPE     45     39     34     30     20     35
D669V10, multiclass
        clus
vv       TSPYL5 MUTATED TSPYL5 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              2               30
  CLUS_5              3               20
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(670) Variable = COX8C MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COX8C MUTATED        0      3      1      0      0
  COX8C WILD-TYPE     79    123     26     43     12
D670V1, multiclass
        clus
vv       COX8C MUTATED COX8C WILD-TYPE
  CLUS_1             0              79
  CLUS_2             3             123
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COX8C MUTATED        0      1      2      0
  COX8C WILD-TYPE     71     75     32     63
D670V2, multiclass
        clus
vv       COX8C MUTATED COX8C WILD-TYPE
  CLUS_1             0              71
  CLUS_2             1              75
  CLUS_3             2              32
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COX8C MUTATED        0      1      1      0      1
  COX8C WILD-TYPE     16     61     50     65     54
D670V3, multiclass
        clus
vv       COX8C MUTATED COX8C WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              61
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COX8C MUTATED        0      2      1      0
  COX8C WILD-TYPE     98     42     49     57
D670V4, multiclass
        clus
vv       COX8C MUTATED COX8C WILD-TYPE
  CLUS_1             0              98
  CLUS_2             2              42
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COX8C MUTATED        3      0      0      0      0
  COX8C WILD-TYPE     59     59     40     37     59
D670V5, multiclass
        clus
vv       COX8C MUTATED COX8C WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  COX8C MUTATED        0      0      3
  COX8C WILD-TYPE    106     54     94
D670V6, multiclass
        clus
vv       COX8C MUTATED COX8C WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  COX8C MUTATED        2      2      0
  COX8C WILD-TYPE    121     93     71
D670V7, multiclass
        clus
vv       COX8C MUTATED COX8C WILD-TYPE
  CLUS_1             2             121
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  COX8C MUTATED        3      1      0
  COX8C WILD-TYPE    154     62     69
D670V8, multiclass
        clus
vv       COX8C MUTATED COX8C WILD-TYPE
  CLUS_1             3             154
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  COX8C MUTATED        0      0      0      2      0      1
  COX8C WILD-TYPE     33     19     59     37     16     44
D670V9, multiclass
        clus
vv       COX8C MUTATED COX8C WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              19
  CLUS_3             0              59
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  COX8C MUTATED        0      1      0      0      2      0
  COX8C WILD-TYPE     47     38     35     32     21     35
D670V10, multiclass
        clus
vv       COX8C MUTATED COX8C WILD-TYPE
  CLUS_1             0              47
  CLUS_2             1              38
  CLUS_3             0              35
  CLUS_4             0              32
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(671) Variable = SLC6A11 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC6A11 MUTATED        1      5      1      0      0
  SLC6A11 WILD-TYPE     78    121     26     43     12
D671V1, multiclass
        clus
vv       SLC6A11 MUTATED SLC6A11 WILD-TYPE
  CLUS_1               1                78
  CLUS_2               5               121
  CLUS_3               1                26
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A11 MUTATED        0      2      2      1
  SLC6A11 WILD-TYPE     71     74     32     62
D671V2, multiclass
        clus
vv       SLC6A11 MUTATED SLC6A11 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               2                74
  CLUS_3               2                32
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC6A11 MUTATED        1      1      3      0      2
  SLC6A11 WILD-TYPE     15     61     48     65     53
D671V3, multiclass
        clus
vv       SLC6A11 MUTATED SLC6A11 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               1                61
  CLUS_3               3                48
  CLUS_4               0                65
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A11 MUTATED        3      3      1      0
  SLC6A11 WILD-TYPE     95     41     49     57
D671V4, multiclass
        clus
vv       SLC6A11 MUTATED SLC6A11 WILD-TYPE
  CLUS_1               3                95
  CLUS_2               3                41
  CLUS_3               1                49
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC6A11 MUTATED        3      0      0      2      1
  SLC6A11 WILD-TYPE     59     59     40     35     58
D671V5, multiclass
        clus
vv       SLC6A11 MUTATED SLC6A11 WILD-TYPE
  CLUS_1               3                59
  CLUS_2               0                59
  CLUS_3               0                40
  CLUS_4               2                35
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC6A11 MUTATED        4      0      2
  SLC6A11 WILD-TYPE    102     54     95
D671V6, multiclass
        clus
vv       SLC6A11 MUTATED SLC6A11 WILD-TYPE
  CLUS_1               4               102
  CLUS_2               0                54
  CLUS_3               2                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC6A11 MUTATED        6      1      0
  SLC6A11 WILD-TYPE    117     94     71
D671V7, multiclass
        clus
vv       SLC6A11 MUTATED SLC6A11 WILD-TYPE
  CLUS_1               6               117
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC6A11 MUTATED        7      0      0
  SLC6A11 WILD-TYPE    150     63     69
D671V8, multiclass
        clus
vv       SLC6A11 MUTATED SLC6A11 WILD-TYPE
  CLUS_1               7               150
  CLUS_2               0                63
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC6A11 MUTATED        0      0      4      0      0      0
  SLC6A11 WILD-TYPE     33     19     55     39     16     45
D671V9, multiclass
        clus
vv       SLC6A11 MUTATED SLC6A11 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               0                19
  CLUS_3               4                55
  CLUS_4               0                39
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC6A11 MUTATED        1      0      3      0      0      0
  SLC6A11 WILD-TYPE     46     39     32     32     23     35
D671V10, multiclass
        clus
vv       SLC6A11 MUTATED SLC6A11 WILD-TYPE
  CLUS_1               1                46
  CLUS_2               0                39
  CLUS_3               3                32
  CLUS_4               0                32
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(672) Variable = IKBKAP MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IKBKAP MUTATED        2      9      0      1      1
  IKBKAP WILD-TYPE     77    117     27     42     11
D672V1, multiclass
        clus
vv       IKBKAP MUTATED IKBKAP WILD-TYPE
  CLUS_1              2               77
  CLUS_2              9              117
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKBKAP MUTATED        1      5      2      4
  IKBKAP WILD-TYPE     70     71     32     59
D672V2, multiclass
        clus
vv       IKBKAP MUTATED IKBKAP WILD-TYPE
  CLUS_1              1               70
  CLUS_2              5               71
  CLUS_3              2               32
  CLUS_4              4               59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IKBKAP MUTATED        1      5      3      0      1
  IKBKAP WILD-TYPE     15     57     48     65     54
D672V3, multiclass
        clus
vv       IKBKAP MUTATED IKBKAP WILD-TYPE
  CLUS_1              1               15
  CLUS_2              5               57
  CLUS_3              3               48
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKBKAP MUTATED        4      1      4      1
  IKBKAP WILD-TYPE     94     43     46     56
D672V4, multiclass
        clus
vv       IKBKAP MUTATED IKBKAP WILD-TYPE
  CLUS_1              4               94
  CLUS_2              1               43
  CLUS_3              4               46
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IKBKAP MUTATED        8      1      0      0      3
  IKBKAP WILD-TYPE     54     58     40     37     56
D672V5, multiclass
        clus
vv       IKBKAP MUTATED IKBKAP WILD-TYPE
  CLUS_1              8               54
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              0               37
  CLUS_5              3               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IKBKAP MUTATED        4      1      7
  IKBKAP WILD-TYPE    102     53     90
D672V6, multiclass
        clus
vv       IKBKAP MUTATED IKBKAP WILD-TYPE
  CLUS_1              4              102
  CLUS_2              1               53
  CLUS_3              7               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IKBKAP MUTATED        9      1      3
  IKBKAP WILD-TYPE    114     94     68
D672V7, multiclass
        clus
vv       IKBKAP MUTATED IKBKAP WILD-TYPE
  CLUS_1              9              114
  CLUS_2              1               94
  CLUS_3              3               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IKBKAP MUTATED       10      1      2
  IKBKAP WILD-TYPE    147     62     67
D672V8, multiclass
        clus
vv       IKBKAP MUTATED IKBKAP WILD-TYPE
  CLUS_1             10              147
  CLUS_2              1               62
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IKBKAP MUTATED        2      2      3      3      0      0
  IKBKAP WILD-TYPE     31     17     56     36     16     45
D672V9, multiclass
        clus
vv       IKBKAP MUTATED IKBKAP WILD-TYPE
  CLUS_1              2               31
  CLUS_2              2               17
  CLUS_3              3               56
  CLUS_4              3               36
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IKBKAP MUTATED        3      0      3      3      0      1
  IKBKAP WILD-TYPE     44     39     32     29     23     34
D672V10, multiclass
        clus
vv       IKBKAP MUTATED IKBKAP WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              3               29
  CLUS_5              0               23
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(673) Variable = DDX50 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX50 MUTATED        0      8      2      1      0
  DDX50 WILD-TYPE     79    118     25     42     12
D673V1, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             8             118
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX50 MUTATED        0      7      1      1
  DDX50 WILD-TYPE     71     69     33     62
D673V2, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             7              69
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX50 MUTATED        1      1      3      1      2
  DDX50 WILD-TYPE     15     61     48     64     53
D673V3, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             1              61
  CLUS_3             3              48
  CLUS_4             1              64
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX50 MUTATED        1      5      1      1
  DDX50 WILD-TYPE     97     39     49     56
D673V4, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             5              39
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX50 MUTATED        6      1      0      3      0
  DDX50 WILD-TYPE     56     58     40     34     59
D673V5, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX50 MUTATED        3      0      7
  DDX50 WILD-TYPE    103     54     90
D673V6, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             7              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX50 MUTATED        9      1      1
  DDX50 WILD-TYPE    114     94     70
D673V7, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             9             114
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX50 MUTATED       10      1      0
  DDX50 WILD-TYPE    147     62     69
D673V8, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1            10             147
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DDX50 MUTATED        0      3      2      3      0      1
  DDX50 WILD-TYPE     33     16     57     36     16     44
D673V9, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             3              16
  CLUS_3             2              57
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DDX50 MUTATED        5      1      1      2      0      0
  DDX50 WILD-TYPE     42     38     34     30     23     35
D673V10, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             5              42
  CLUS_2             1              38
  CLUS_3             1              34
  CLUS_4             2              30
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(674) Variable = CD3EAP MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD3EAP MUTATED        0      6      0      0      1
  CD3EAP WILD-TYPE     79    120     27     43     11
D674V1, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              0               79
  CLUS_2              6              120
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD3EAP MUTATED        0      3      0      1
  CD3EAP WILD-TYPE     71     73     34     62
D674V2, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              0               71
  CLUS_2              3               73
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD3EAP MUTATED        1      1      1      1      3
  CD3EAP WILD-TYPE     15     61     50     64     52
D674V3, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              1               15
  CLUS_2              1               61
  CLUS_3              1               50
  CLUS_4              1               64
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD3EAP MUTATED        3      3      0      1
  CD3EAP WILD-TYPE     95     41     50     56
D674V4, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              3               95
  CLUS_2              3               41
  CLUS_3              0               50
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD3EAP MUTATED        4      1      1      0      0
  CD3EAP WILD-TYPE     58     58     39     37     59
D674V5, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              4               58
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              0               37
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CD3EAP MUTATED        1      1      4
  CD3EAP WILD-TYPE    105     53     93
D674V6, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              1              105
  CLUS_2              1               53
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CD3EAP MUTATED        5      1      1
  CD3EAP WILD-TYPE    118     94     70
D674V7, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              5              118
  CLUS_2              1               94
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CD3EAP MUTATED        6      1      0
  CD3EAP WILD-TYPE    151     62     69
D674V8, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              6              151
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CD3EAP MUTATED        0      0      2      2      0      0
  CD3EAP WILD-TYPE     33     19     57     37     16     45
D674V9, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               19
  CLUS_3              2               57
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CD3EAP MUTATED        1      0      2      1      0      0
  CD3EAP WILD-TYPE     46     39     33     31     23     35
D674V10, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(675) Variable = NMNAT1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NMNAT1 MUTATED        0      3      0      0      0
  NMNAT1 WILD-TYPE     79    123     27     43     12
D675V1, multiclass
        clus
vv       NMNAT1 MUTATED NMNAT1 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              3              123
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NMNAT1 MUTATED        0      1      1      0
  NMNAT1 WILD-TYPE     71     75     33     63
D675V2, multiclass
[1] "Remove cluster labels:" "NMNAT1 MUTATED"        
clus
  NMNAT1 MUTATED NMNAT1 WILD-TYPE 
               2              242 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6453 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-7715       TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8077       TCGA-BR-8078       TCGA-BR-8080       TCGA-BR-8081 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289       TCGA-BR-8291 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8297       TCGA-BR-8360 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368       TCGA-BR-8369 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8483       TCGA-BR-8484       TCGA-BR-8485       TCGA-BR-8486 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8487       TCGA-BR-8588       TCGA-BR-8589       TCGA-BR-8590 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8686       TCGA-BR-8687       TCGA-BR-8690 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A44T       TCGA-BR-A44U       TCGA-BR-A452       TCGA-BR-A453 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A4CQ       TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A4IV       TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A4J2       TCGA-BR-A4J4       TCGA-BR-A4J6       TCGA-BR-A4J7 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4PE       TCGA-BR-A4PF 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A4QI       TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-5799       TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-5803       TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8528 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-8534       TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-A487       TCGA-CD-A489       TCGA-CD-A48A       TCGA-CD-A48C 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI       TCGA-CD-A4MJ 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-5717       TCGA-CG-5718 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-8572       TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8575 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-8576       TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-A4Z0       TCGA-EQ-5647       TCGA-EQ-8122       TCGA-EQ-A4SO 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-FP-7735       TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-FP-8099       TCGA-FP-8209       TCGA-FP-8210       TCGA-FP-8211 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-FP-8631       TCGA-FP-A4BE       TCGA-FP-A4BF       TCGA-HF-7132 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HF-7133       TCGA-HF-7136       TCGA-HJ-7597       TCGA-HU-8243 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-8245       TCGA-HU-8249       TCGA-HU-8602       TCGA-HU-8604 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-8608       TCGA-HU-8610       TCGA-HU-A4G2       TCGA-HU-A4G3 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-A4G6       TCGA-HU-A4G8       TCGA-HU-A4G9       TCGA-HU-A4GC 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-A4GD       TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GN 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-A4GP       TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GU 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H0       TCGA-HU-A4H2 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-A4HD       TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-IN-8663       TCGA-IP-7968 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NMNAT1 MUTATED        0      1      1      0      0
  NMNAT1 WILD-TYPE     16     61     50     65     55
D675V3, multiclass
[1] "Remove cluster labels:" "NMNAT1 MUTATED"        
clus
  NMNAT1 MUTATED NMNAT1 WILD-TYPE 
               2              247 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-4187       TCGA-BR-4188       TCGA-BR-4191       TCGA-BR-4201 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256       TCGA-BR-4257 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280       TCGA-BR-4294 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-4357       TCGA-BR-4361       TCGA-BR-4362       TCGA-BR-4363 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-4366       TCGA-BR-4368       TCGA-BR-4369       TCGA-BR-4370 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-4371       TCGA-BR-6452       TCGA-BR-6453       TCGA-BR-6454 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457       TCGA-BR-6458 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566       TCGA-BR-6705 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6710       TCGA-BR-6801 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-7196       TCGA-BR-7197 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-7703       TCGA-BR-7715       TCGA-BR-7716       TCGA-BR-7717 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-7722       TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8059       TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8286       TCGA-BR-8289       TCGA-BR-8291       TCGA-BR-8295 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8296       TCGA-BR-8297       TCGA-BR-8360       TCGA-BR-8361 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365       TCGA-BR-8366 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8367       TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8370 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8380       TCGA-BR-8381 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483       TCGA-BR-8484 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588       TCGA-BR-8589 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8686       TCGA-BR-8687 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8690       TCGA-BR-A44T       TCGA-BR-A44U       TCGA-BR-A452 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR       TCGA-BR-A4CS 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY       TCGA-BR-A4IZ 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A4J1       TCGA-BR-A4J2       TCGA-BR-A4J4       TCGA-BR-A4J6 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4PE 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A4PF       TCGA-BR-A4QI       TCGA-BR-A4QL       TCGA-BR-A4QM 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800       TCGA-CD-5801 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5804       TCGA-CD-5813 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8527 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-8528       TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-8532       TCGA-CD-8534       TCGA-CD-8535       TCGA-CD-8536 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489       TCGA-CD-A48A 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-A4MJ       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4442       TCGA-CG-4443       TCGA-CG-4444 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4465       TCGA-CG-4466 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-4469       TCGA-CG-4474       TCGA-CG-4475       TCGA-CG-4476 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5723       TCGA-CG-5724 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-6525       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8573       TCGA-D7-8574 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-8575       TCGA-D7-8578       TCGA-D7-A4YT       TCGA-D7-A4YU 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY       TCGA-D7-A4Z0 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-EQ-8122       TCGA-EQ-A4SO       TCGA-F1-6177       TCGA-F1-6874 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7916       TCGA-FP-7998 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HF-7132       TCGA-HF-7133       TCGA-HF-7136       TCGA-HJ-7597 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-8602       TCGA-HU-8608       TCGA-HU-8610       TCGA-HU-A4GF 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GU       TCGA-HU-A4GX 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-A4GY       TCGA-HU-A4H2       TCGA-HU-A4H3       TCGA-HU-A4H4 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-A4H5       TCGA-HU-A4HD       TCGA-IN-7806       TCGA-IN-7808 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-IN-8462       TCGA-IN-8663       TCGA-IP-7968 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NMNAT1 MUTATED        0      1      1      0
  NMNAT1 WILD-TYPE     98     43     49     57
D675V4, multiclass
[1] "Remove cluster labels:" "NMNAT1 MUTATED"        
clus
  NMNAT1 MUTATED NMNAT1 WILD-TYPE 
               2              247 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-4183       TCGA-BR-4184 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-4187       TCGA-BR-4188       TCGA-BR-4191       TCGA-BR-4201 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256       TCGA-BR-4257 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280       TCGA-BR-4294 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-4357       TCGA-BR-4361       TCGA-BR-4362       TCGA-BR-4363 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-4366       TCGA-BR-4368       TCGA-BR-4369       TCGA-BR-4370 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-4371       TCGA-BR-6452       TCGA-BR-6453       TCGA-BR-6454 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457       TCGA-BR-6458 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566       TCGA-BR-6705 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6710       TCGA-BR-6801 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-7196       TCGA-BR-7197 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-7703       TCGA-BR-7715       TCGA-BR-7716       TCGA-BR-7717 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-7722       TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8059       TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8286       TCGA-BR-8289       TCGA-BR-8291       TCGA-BR-8295 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8296       TCGA-BR-8297       TCGA-BR-8360       TCGA-BR-8361 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365       TCGA-BR-8366 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8367       TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8370 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8380       TCGA-BR-8381 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483       TCGA-BR-8484 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588       TCGA-BR-8589 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8686       TCGA-BR-8687 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8690       TCGA-BR-A44T       TCGA-BR-A44U       TCGA-BR-A452 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR       TCGA-BR-A4CS 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY       TCGA-BR-A4IZ 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A4J1       TCGA-BR-A4J2       TCGA-BR-A4J4       TCGA-BR-A4J6 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4PE 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A4PF       TCGA-BR-A4QI       TCGA-BR-A4QL       TCGA-BR-A4QM 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800       TCGA-CD-5801 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5804       TCGA-CD-5813 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8527 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-8528       TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-8532       TCGA-CD-8534       TCGA-CD-8535       TCGA-CD-8536 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489       TCGA-CD-A48A 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-A4MJ       TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-4438       TCGA-CG-4442       TCGA-CG-4443       TCGA-CG-4444 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-4449       TCGA-CG-4455       TCGA-CG-4465       TCGA-CG-4466 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-4469       TCGA-CG-4474       TCGA-CG-4475       TCGA-CG-4476 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5723       TCGA-CG-5724 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-6525       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8573       TCGA-D7-8574 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-8575       TCGA-D7-8578       TCGA-D7-A4YT       TCGA-D7-A4YU 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY       TCGA-D7-A4Z0 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-EQ-8122       TCGA-EQ-A4SO       TCGA-F1-6177       TCGA-F1-6874 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7916       TCGA-FP-7998 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HF-7132       TCGA-HF-7133       TCGA-HF-7136       TCGA-HJ-7597 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-8602       TCGA-HU-8608       TCGA-HU-8610       TCGA-HU-A4GF 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GU       TCGA-HU-A4GX 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-A4GY       TCGA-HU-A4H2       TCGA-HU-A4H3       TCGA-HU-A4H4 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-A4H5       TCGA-HU-A4HD       TCGA-IN-7806       TCGA-IN-7808 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-IN-8462       TCGA-IN-8663       TCGA-IP-7968 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NMNAT1 MUTATED        1      0      1      1      0
  NMNAT1 WILD-TYPE     61     59     39     36     59
D675V5, multiclass
        clus
vv       NMNAT1 MUTATED NMNAT1 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NMNAT1 MUTATED        0      0      3
  NMNAT1 WILD-TYPE    106     54     94
D675V6, multiclass
        clus
vv       NMNAT1 MUTATED NMNAT1 WILD-TYPE
  CLUS_1              0              106
  CLUS_2              0               54
  CLUS_3              3               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NMNAT1 MUTATED        3      0      0
  NMNAT1 WILD-TYPE    120     95     71
D675V7, multiclass
        clus
vv       NMNAT1 MUTATED NMNAT1 WILD-TYPE
  CLUS_1              3              120
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NMNAT1 MUTATED        3      0      0
  NMNAT1 WILD-TYPE    154     63     69
D675V8, multiclass
        clus
vv       NMNAT1 MUTATED NMNAT1 WILD-TYPE
  CLUS_1              3              154
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NMNAT1 MUTATED        0      1      1      0      0      0
  NMNAT1 WILD-TYPE     33     18     58     39     16     45
D675V9, multiclass
[1] "Remove cluster labels:" "NMNAT1 MUTATED"        
clus
  NMNAT1 MUTATED NMNAT1 WILD-TYPE 
               2              209 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6453 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-7715       TCGA-BR-7717       TCGA-BR-7723       TCGA-BR-7851 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8077       TCGA-BR-8078 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8080       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8297 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8360       TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8370 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373       TCGA-BR-8380 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8487       TCGA-BR-8588 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A44T       TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J6 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8534       TCGA-CD-8535 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-4449       TCGA-CG-5717 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5726 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8574       TCGA-D7-8575 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-8576       TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YY       TCGA-D7-A4Z0 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-EQ-5647       TCGA-EQ-8122       TCGA-F1-6177       TCGA-F1-6874 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7735       TCGA-FP-7829 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-FP-7998       TCGA-FP-8099       TCGA-FP-8209       TCGA-FP-8210 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-FP-8211       TCGA-FP-8631       TCGA-FP-A4BE       TCGA-HF-7132 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HF-7136       TCGA-HU-8243       TCGA-HU-8602       TCGA-HU-8604 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-8608       TCGA-HU-A4G3       TCGA-HU-A4G8       TCGA-HU-A4GC 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-A4GD       TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GN 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GX       TCGA-HU-A4GY 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-A4H2       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-IP-7968 
"NMNAT1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NMNAT1 MUTATED        1      0      1      0      0      0
  NMNAT1 WILD-TYPE     46     39     34     32     23     35
D675V10, multiclass
[1] "Remove cluster labels:" "NMNAT1 MUTATED"        
clus
  NMNAT1 MUTATED NMNAT1 WILD-TYPE 
               2              209 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6453 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-7715       TCGA-BR-7717       TCGA-BR-7723       TCGA-BR-7851 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8077       TCGA-BR-8078 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8080       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8297 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8360       TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8370 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373       TCGA-BR-8380 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8487       TCGA-BR-8588 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A44T       TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J6 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8534       TCGA-CD-8535 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-4449       TCGA-CG-5717 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5726 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8574       TCGA-D7-8575 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-8576       TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YY       TCGA-D7-A4Z0 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-EQ-5647       TCGA-EQ-8122       TCGA-F1-6177       TCGA-F1-6874 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7735       TCGA-FP-7829 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-FP-7998       TCGA-FP-8099       TCGA-FP-8209       TCGA-FP-8210 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-FP-8211       TCGA-FP-8631       TCGA-FP-A4BE       TCGA-HF-7132 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HF-7136       TCGA-HU-8243       TCGA-HU-8602       TCGA-HU-8604 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-8608       TCGA-HU-A4G3       TCGA-HU-A4G8       TCGA-HU-A4GC 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-A4GD       TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GN 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GX       TCGA-HU-A4GY 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-HU-A4H2       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" "NMNAT1 WILD-TYPE" 
      TCGA-IP-7968 
"NMNAT1 WILD-TYPE" 

Clustering(676) Variable = KIDINS220 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIDINS220 MUTATED        2     10      1      2      1
  KIDINS220 WILD-TYPE     77    116     26     41     11
D676V1, multiclass
        clus
vv       KIDINS220 MUTATED KIDINS220 WILD-TYPE
  CLUS_1                 2                  77
  CLUS_2                10                 116
  CLUS_3                 1                  26
  CLUS_4                 2                  41
  CLUS_5                 1                  11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIDINS220 MUTATED        4      7      0      1
  KIDINS220 WILD-TYPE     67     69     34     62
D676V2, multiclass
        clus
vv       KIDINS220 MUTATED KIDINS220 WILD-TYPE
  CLUS_1                 4                  67
  CLUS_2                 7                  69
  CLUS_3                 0                  34
  CLUS_4                 1                  62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIDINS220 MUTATED        2      5      2      0      3
  KIDINS220 WILD-TYPE     14     57     49     65     52
D676V3, multiclass
        clus
vv       KIDINS220 MUTATED KIDINS220 WILD-TYPE
  CLUS_1                 2                  14
  CLUS_2                 5                  57
  CLUS_3                 2                  49
  CLUS_4                 0                  65
  CLUS_5                 3                  52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIDINS220 MUTATED        3      5      4      0
  KIDINS220 WILD-TYPE     95     39     46     57
D676V4, multiclass
        clus
vv       KIDINS220 MUTATED KIDINS220 WILD-TYPE
  CLUS_1                 3                  95
  CLUS_2                 5                  39
  CLUS_3                 4                  46
  CLUS_4                 0                  57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIDINS220 MUTATED        6      1      3      4      1
  KIDINS220 WILD-TYPE     56     58     37     33     58
D676V5, multiclass
        clus
vv       KIDINS220 MUTATED KIDINS220 WILD-TYPE
  CLUS_1                 6                  56
  CLUS_2                 1                  58
  CLUS_3                 3                  37
  CLUS_4                 4                  33
  CLUS_5                 1                  58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  KIDINS220 MUTATED        2      0     13
  KIDINS220 WILD-TYPE    104     54     84
D676V6, multiclass
        clus
vv       KIDINS220 MUTATED KIDINS220 WILD-TYPE
  CLUS_1                 2                 104
  CLUS_2                 0                  54
  CLUS_3                13                  84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  KIDINS220 MUTATED       13      0      3
  KIDINS220 WILD-TYPE    110     95     68
D676V7, multiclass
        clus
vv       KIDINS220 MUTATED KIDINS220 WILD-TYPE
  CLUS_1                13                 110
  CLUS_2                 0                  95
  CLUS_3                 3                  68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  KIDINS220 MUTATED       14      0      2
  KIDINS220 WILD-TYPE    143     63     67
D676V8, multiclass
        clus
vv       KIDINS220 MUTATED KIDINS220 WILD-TYPE
  CLUS_1                14                 143
  CLUS_2                 0                  63
  CLUS_3                 2                  67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIDINS220 MUTATED        1      4      3      2      0      0
  KIDINS220 WILD-TYPE     32     15     56     37     16     45
D676V9, multiclass
        clus
vv       KIDINS220 MUTATED KIDINS220 WILD-TYPE
  CLUS_1                 1                  32
  CLUS_2                 4                  15
  CLUS_3                 3                  56
  CLUS_4                 2                  37
  CLUS_5                 0                  16
  CLUS_6                 0                  45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIDINS220 MUTATED        7      0      2      1      0      0
  KIDINS220 WILD-TYPE     40     39     33     31     23     35
D676V10, multiclass
        clus
vv       KIDINS220 MUTATED KIDINS220 WILD-TYPE
  CLUS_1                 7                  40
  CLUS_2                 0                  39
  CLUS_3                 2                  33
  CLUS_4                 1                  31
  CLUS_5                 0                  23
  CLUS_6                 0                  35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(677) Variable = TRIM46 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIM46 MUTATED        1      8      1      1      1
  TRIM46 WILD-TYPE     78    118     26     42     11
D677V1, multiclass
        clus
vv       TRIM46 MUTATED TRIM46 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              8              118
  CLUS_3              1               26
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM46 MUTATED        0      7      1      0
  TRIM46 WILD-TYPE     71     69     33     63
D677V2, multiclass
        clus
vv       TRIM46 MUTATED TRIM46 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              7               69
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIM46 MUTATED        0      5      1      1      3
  TRIM46 WILD-TYPE     16     57     50     64     52
D677V3, multiclass
        clus
vv       TRIM46 MUTATED TRIM46 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              5               57
  CLUS_3              1               50
  CLUS_4              1               64
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM46 MUTATED        1      4      4      1
  TRIM46 WILD-TYPE     97     40     46     56
D677V4, multiclass
        clus
vv       TRIM46 MUTATED TRIM46 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              4               40
  CLUS_3              4               46
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIM46 MUTATED        7      1      0      3      0
  TRIM46 WILD-TYPE     55     58     40     34     59
D677V5, multiclass
        clus
vv       TRIM46 MUTATED TRIM46 WILD-TYPE
  CLUS_1              7               55
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              3               34
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM46 MUTATED        1      1      9
  TRIM46 WILD-TYPE    105     53     88
D677V6, multiclass
        clus
vv       TRIM46 MUTATED TRIM46 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              1               53
  CLUS_3              9               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM46 MUTATED       10      2      0
  TRIM46 WILD-TYPE    113     93     71
D677V7, multiclass
        clus
vv       TRIM46 MUTATED TRIM46 WILD-TYPE
  CLUS_1             10              113
  CLUS_2              2               93
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM46 MUTATED       11      0      1
  TRIM46 WILD-TYPE    146     63     68
D677V8, multiclass
        clus
vv       TRIM46 MUTATED TRIM46 WILD-TYPE
  CLUS_1             11              146
  CLUS_2              0               63
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRIM46 MUTATED        1      1      2      4      0      0
  TRIM46 WILD-TYPE     32     18     57     35     16     45
D677V9, multiclass
        clus
vv       TRIM46 MUTATED TRIM46 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              4               35
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRIM46 MUTATED        3      0      2      1      2      0
  TRIM46 WILD-TYPE     44     39     33     31     21     35
D677V10, multiclass
        clus
vv       TRIM46 MUTATED TRIM46 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              1               31
  CLUS_5              2               21
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(678) Variable = GIGYF2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIGYF2 MUTATED        0      8      1      1      1
  GIGYF2 WILD-TYPE     79    118     26     42     11
D678V1, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              8              118
  CLUS_3              1               26
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIGYF2 MUTATED        0      3      3      2
  GIGYF2 WILD-TYPE     71     73     31     61
D678V2, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              3               73
  CLUS_3              3               31
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIGYF2 MUTATED        1      6      1      0      3
  GIGYF2 WILD-TYPE     15     56     50     65     52
D678V3, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              6               56
  CLUS_3              1               50
  CLUS_4              0               65
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIGYF2 MUTATED        2      3      4      2
  GIGYF2 WILD-TYPE     96     41     46     55
D678V4, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              3               41
  CLUS_3              4               46
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIGYF2 MUTATED        8      1      0      1      0
  GIGYF2 WILD-TYPE     54     58     40     36     59
D678V5, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              8               54
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIGYF2 MUTATED        4      0      6
  GIGYF2 WILD-TYPE    102     54     91
D678V6, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              4              102
  CLUS_2              0               54
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIGYF2 MUTATED       10      1      0
  GIGYF2 WILD-TYPE    113     94     71
D678V7, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1             10              113
  CLUS_2              1               94
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIGYF2 MUTATED       10      1      0
  GIGYF2 WILD-TYPE    147     62     69
D678V8, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1             10              147
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GIGYF2 MUTATED        0      1      5      0      0      1
  GIGYF2 WILD-TYPE     33     18     54     39     16     44
D678V9, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               18
  CLUS_3              5               54
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GIGYF2 MUTATED        1      1      4      0      1      0
  GIGYF2 WILD-TYPE     46     38     31     32     22     35
D678V10, multiclass
        clus
vv       GIGYF2 MUTATED GIGYF2 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              1               38
  CLUS_3              4               31
  CLUS_4              0               32
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(679) Variable = P2RX1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P2RX1 MUTATED        0      3      0      0      0
  P2RX1 WILD-TYPE     79    123     27     43     12
D679V1, multiclass
        clus
vv       P2RX1 MUTATED P2RX1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             3             123
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RX1 MUTATED        0      3      0      0
  P2RX1 WILD-TYPE     71     73     34     63
D679V2, multiclass
        clus
vv       P2RX1 MUTATED P2RX1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             3              73
  CLUS_3             0              34
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P2RX1 MUTATED        0      1      0      0      1
  P2RX1 WILD-TYPE     16     61     51     65     54
D679V3, multiclass
[1] "Remove cluster labels:" "P2RX1 MUTATED"         
clus
  P2RX1 MUTATED P2RX1 WILD-TYPE 
              2             247 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6710 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7715 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8080 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-A4J4      TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4442 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4474 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5717 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7916 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-FP-7998      TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7136 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-HJ-7597      TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4GF 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RX1 MUTATED        0      1      1      0
  P2RX1 WILD-TYPE     98     43     49     57
D679V4, multiclass
[1] "Remove cluster labels:" "P2RX1 MUTATED"         
clus
  P2RX1 MUTATED P2RX1 WILD-TYPE 
              2             247 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4183      TCGA-BR-4184 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6710 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7715 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8080 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-A4J4      TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4442 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4474 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5717 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7916 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-FP-7998      TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7136 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-HJ-7597      TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4GF 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P2RX1 MUTATED        2      0      0      0      0
  P2RX1 WILD-TYPE     60     59     40     37     59
D679V5, multiclass
[1] "Remove cluster labels:" "P2RX1 MUTATED"         
clus
  P2RX1 MUTATED P2RX1 WILD-TYPE 
              2             255 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4187      TCGA-BR-4191 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-4257      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-4292      TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-4362      TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-4369      TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-6453      TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-6565      TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-6707      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7716 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8078 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8297      TCGA-BR-8361 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8366 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8371 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CR 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-CD-5798 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5803 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8526 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48C 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4442      TCGA-CG-4443      TCGA-CG-4444 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-4449      TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-4469      TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5732      TCGA-CG-5734 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-6518      TCGA-D7-6519 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-EQ-8122 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7916 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-HF-7133      TCGA-HF-7136      TCGA-HU-8604      TCGA-HU-8608 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4G3      TCGA-HU-A4G6 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-HU-A4G9      TCGA-HU-A4GC      TCGA-HU-A4GF      TCGA-HU-A4GH 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GT      TCGA-HU-A4GU 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H0      TCGA-HU-A4H2 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-HU-A4H8      TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  P2RX1 MUTATED        0      0      2
  P2RX1 WILD-TYPE    106     54     95
D679V6, multiclass
[1] "Remove cluster labels:" "P2RX1 MUTATED"         
clus
  P2RX1 MUTATED P2RX1 WILD-TYPE 
              2             255 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4187      TCGA-BR-4191 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-4257      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-4292      TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-4362      TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-4369      TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-6453      TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-6457      TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-6565      TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-6707      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7716 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8078 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8297      TCGA-BR-8361 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8366 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8371 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CR 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-CD-5798 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5803 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8526 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48C 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4442      TCGA-CG-4443      TCGA-CG-4444 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-4449      TCGA-CG-4462      TCGA-CG-4465      TCGA-CG-4466 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-4469      TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5732      TCGA-CG-5734 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-6518      TCGA-D7-6519 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-EQ-8122 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7916 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-HF-7133      TCGA-HF-7136      TCGA-HU-8604      TCGA-HU-8608 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4G3      TCGA-HU-A4G6 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-HU-A4G9      TCGA-HU-A4GC      TCGA-HU-A4GF      TCGA-HU-A4GH 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GT      TCGA-HU-A4GU 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H0      TCGA-HU-A4H2 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-HU-A4H8      TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
     TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" "P2RX1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  P2RX1 MUTATED        1      1      1
  P2RX1 WILD-TYPE    122     94     70
D679V7, multiclass
        clus
vv       P2RX1 MUTATED P2RX1 WILD-TYPE
  CLUS_1             1             122
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  P2RX1 MUTATED        2      1      0
  P2RX1 WILD-TYPE    155     62     69
D679V8, multiclass
        clus
vv       P2RX1 MUTATED P2RX1 WILD-TYPE
  CLUS_1             2             155
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  P2RX1 MUTATED        0      1      1      1      0      0
  P2RX1 WILD-TYPE     33     18     58     38     16     45
D679V9, multiclass
        clus
vv       P2RX1 MUTATED P2RX1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              18
  CLUS_3             1              58
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  P2RX1 MUTATED        2      0      1      0      0      0
  P2RX1 WILD-TYPE     45     39     34     32     23     35
D679V10, multiclass
        clus
vv       P2RX1 MUTATED P2RX1 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(680) Variable = CSNK1G3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSNK1G3 MUTATED        0      6      1      0      0
  CSNK1G3 WILD-TYPE     79    120     26     43     12
D680V1, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               6               120
  CLUS_3               1                26
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1G3 MUTATED        0      4      1      1
  CSNK1G3 WILD-TYPE     71     72     33     62
D680V2, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               4                72
  CLUS_3               1                33
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSNK1G3 MUTATED        1      1      3      0      1
  CSNK1G3 WILD-TYPE     15     61     48     65     54
D680V3, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               1                61
  CLUS_3               3                48
  CLUS_4               0                65
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1G3 MUTATED        1      5      0      0
  CSNK1G3 WILD-TYPE     97     39     50     57
D680V4, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               5                39
  CLUS_3               0                50
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSNK1G3 MUTATED        4      0      0      1      0
  CSNK1G3 WILD-TYPE     58     59     40     36     59
D680V5, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               4                58
  CLUS_2               0                59
  CLUS_3               0                40
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CSNK1G3 MUTATED        1      0      4
  CSNK1G3 WILD-TYPE    105     54     93
D680V6, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               0                54
  CLUS_3               4                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CSNK1G3 MUTATED        5      1      1
  CSNK1G3 WILD-TYPE    118     94     70
D680V7, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               5               118
  CLUS_2               1                94
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CSNK1G3 MUTATED        6      1      0
  CSNK1G3 WILD-TYPE    151     62     69
D680V8, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               6               151
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CSNK1G3 MUTATED        0      0      3      2      0      1
  CSNK1G3 WILD-TYPE     33     19     56     37     16     44
D680V9, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               0                19
  CLUS_3               3                56
  CLUS_4               2                37
  CLUS_5               0                16
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CSNK1G3 MUTATED        3      1      2      0      0      0
  CSNK1G3 WILD-TYPE     44     38     33     32     23     35
D680V10, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               3                44
  CLUS_2               1                38
  CLUS_3               2                33
  CLUS_4               0                32
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(681) Variable = TIMP3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TIMP3 MUTATED        2      3      0      0      1
  TIMP3 WILD-TYPE     77    123     27     43     11
D681V1, multiclass
        clus
vv       TIMP3 MUTATED TIMP3 WILD-TYPE
  CLUS_1             2              77
  CLUS_2             3             123
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIMP3 MUTATED        1      3      1      0
  TIMP3 WILD-TYPE     70     73     33     63
D681V2, multiclass
        clus
vv       TIMP3 MUTATED TIMP3 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             3              73
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TIMP3 MUTATED        0      2      2      0      0
  TIMP3 WILD-TYPE     16     60     49     65     55
D681V3, multiclass
        clus
vv       TIMP3 MUTATED TIMP3 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             0              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIMP3 MUTATED        2      2      0      0
  TIMP3 WILD-TYPE     96     42     50     57
D681V4, multiclass
        clus
vv       TIMP3 MUTATED TIMP3 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             2              42
  CLUS_3             0              50
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TIMP3 MUTATED        2      0      1      1      2
  TIMP3 WILD-TYPE     60     59     39     36     57
D681V5, multiclass
        clus
vv       TIMP3 MUTATED TIMP3 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIMP3 MUTATED        3      0      3
  TIMP3 WILD-TYPE    103     54     94
D681V6, multiclass
        clus
vv       TIMP3 MUTATED TIMP3 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIMP3 MUTATED        3      1      2
  TIMP3 WILD-TYPE    120     94     69
D681V7, multiclass
        clus
vv       TIMP3 MUTATED TIMP3 WILD-TYPE
  CLUS_1             3             120
  CLUS_2             1              94
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIMP3 MUTATED        4      0      2
  TIMP3 WILD-TYPE    153     63     67
D681V8, multiclass
        clus
vv       TIMP3 MUTATED TIMP3 WILD-TYPE
  CLUS_1             4             153
  CLUS_2             0              63
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TIMP3 MUTATED        2      0      0      1      0      0
  TIMP3 WILD-TYPE     31     19     59     38     16     45
D681V9, multiclass
        clus
vv       TIMP3 MUTATED TIMP3 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              19
  CLUS_3             0              59
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TIMP3 MUTATED        2      0      0      0      0      1
  TIMP3 WILD-TYPE     45     39     35     32     23     34
D681V10, multiclass
        clus
vv       TIMP3 MUTATED TIMP3 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             0              35
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(682) Variable = C10ORF120 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C10ORF120 MUTATED        1      3      0      1      0
  C10ORF120 WILD-TYPE     78    123     27     42     12
D682V1, multiclass
        clus
vv       C10ORF120 MUTATED C10ORF120 WILD-TYPE
  CLUS_1                 1                  78
  CLUS_2                 3                 123
  CLUS_3                 0                  27
  CLUS_4                 1                  42
  CLUS_5                 0                  12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF120 MUTATED        1      2      0      0
  C10ORF120 WILD-TYPE     70     74     34     63
D682V2, multiclass
        clus
vv       C10ORF120 MUTATED C10ORF120 WILD-TYPE
  CLUS_1                 1                  70
  CLUS_2                 2                  74
  CLUS_3                 0                  34
  CLUS_4                 0                  63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C10ORF120 MUTATED        0      3      1      0      0
  C10ORF120 WILD-TYPE     16     59     50     65     55
D682V3, multiclass
        clus
vv       C10ORF120 MUTATED C10ORF120 WILD-TYPE
  CLUS_1                 0                  16
  CLUS_2                 3                  59
  CLUS_3                 1                  50
  CLUS_4                 0                  65
  CLUS_5                 0                  55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF120 MUTATED        0      3      1      0
  C10ORF120 WILD-TYPE     98     41     49     57
D682V4, multiclass
        clus
vv       C10ORF120 MUTATED C10ORF120 WILD-TYPE
  CLUS_1                 0                  98
  CLUS_2                 3                  41
  CLUS_3                 1                  49
  CLUS_4                 0                  57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C10ORF120 MUTATED        1      0      0      1      0
  C10ORF120 WILD-TYPE     61     59     40     36     59
D682V5, multiclass
[1] "Remove cluster labels:" "C10ORF120 MUTATED"     
clus
  C10ORF120 MUTATED C10ORF120 WILD-TYPE 
                  2                 255 
         TCGA-B7-5816          TCGA-B7-5818          TCGA-BR-4187 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-4191          TCGA-BR-4201          TCGA-BR-4253 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-4255          TCGA-BR-4256          TCGA-BR-4257 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-4267          TCGA-BR-4279          TCGA-BR-4280 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-4292          TCGA-BR-4294          TCGA-BR-4357 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-4361          TCGA-BR-4362          TCGA-BR-4363 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-4366          TCGA-BR-4368          TCGA-BR-4369 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-4370          TCGA-BR-4371          TCGA-BR-6452 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6453          TCGA-BR-6454          TCGA-BR-6455 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6456          TCGA-BR-6457          TCGA-BR-6458 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6563          TCGA-BR-6564          TCGA-BR-6565 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6566          TCGA-BR-6705          TCGA-BR-6706 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6707          TCGA-BR-6710          TCGA-BR-6801 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6802          TCGA-BR-6803          TCGA-BR-6852 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-7196          TCGA-BR-7197          TCGA-BR-7703 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-7707          TCGA-BR-7715          TCGA-BR-7716 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-7717          TCGA-BR-7722          TCGA-BR-7723 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-7851          TCGA-BR-7901          TCGA-BR-7957 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-7958          TCGA-BR-7959          TCGA-BR-8058 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8059          TCGA-BR-8077          TCGA-BR-8078 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8080          TCGA-BR-8081          TCGA-BR-8284 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8286          TCGA-BR-8289          TCGA-BR-8291 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8297          TCGA-BR-8361          TCGA-BR-8363 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8364          TCGA-BR-8365          TCGA-BR-8366 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8367          TCGA-BR-8368          TCGA-BR-8369 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8371          TCGA-BR-8372          TCGA-BR-8373 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8380          TCGA-BR-8381          TCGA-BR-8382 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8384          TCGA-BR-8483          TCGA-BR-8484 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8485          TCGA-BR-8486          TCGA-BR-8487 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8588          TCGA-BR-8589          TCGA-BR-8590 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8591          TCGA-BR-8592          TCGA-BR-8677 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8678          TCGA-BR-8679          TCGA-BR-8680 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8682          TCGA-BR-8683          TCGA-BR-8686 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8687          TCGA-BR-A44T          TCGA-BR-A452 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A453          TCGA-BR-A4CR          TCGA-BR-A4CS 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A4IU          TCGA-BR-A4IV          TCGA-BR-A4IY 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A4IZ          TCGA-BR-A4J1          TCGA-BR-A4J2 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A4J4          TCGA-BR-A4J6          TCGA-BR-A4J7 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A4J8          TCGA-BR-A4PD          TCGA-BR-A4PE 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A4PF          TCGA-BR-A4QI          TCGA-CD-5798 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-5799          TCGA-CD-5800          TCGA-CD-5801 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-5803          TCGA-CD-5804          TCGA-CD-5813 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-8524          TCGA-CD-8526          TCGA-CD-8528 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-8529          TCGA-CD-8530          TCGA-CD-8531 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-8532          TCGA-CD-8534          TCGA-CD-8535 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-8536          TCGA-CD-A486          TCGA-CD-A487 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-A489          TCGA-CD-A48C          TCGA-CD-A4MG 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-A4MH          TCGA-CD-A4MI          TCGA-CD-A4MJ 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-4301          TCGA-CG-4304          TCGA-CG-4305 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-4306          TCGA-CG-4436          TCGA-CG-4437 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-4438          TCGA-CG-4440          TCGA-CG-4441 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-4443          TCGA-CG-4444          TCGA-CG-4449 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-4462          TCGA-CG-4465          TCGA-CG-4466 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-4469          TCGA-CG-4474          TCGA-CG-4475 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-4476          TCGA-CG-4477          TCGA-CG-5717 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-5718          TCGA-CG-5719          TCGA-CG-5720 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-5721          TCGA-CG-5722          TCGA-CG-5723 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-5724          TCGA-CG-5726          TCGA-CG-5732 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-5734          TCGA-D7-5577          TCGA-D7-5578 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-6518          TCGA-D7-6519          TCGA-D7-6520 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-6521          TCGA-D7-6522          TCGA-D7-6524 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-6525          TCGA-D7-6526          TCGA-D7-6527 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-6528          TCGA-D7-6815          TCGA-D7-6817 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-6818          TCGA-D7-6820          TCGA-D7-6822 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-8570          TCGA-D7-8572          TCGA-D7-8573 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-8574          TCGA-D7-8575          TCGA-D7-8576 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-8578          TCGA-D7-8579          TCGA-D7-A4YT 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-A4YU          TCGA-D7-A4YV          TCGA-D7-A4YX 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-A4YY          TCGA-D7-A4Z0          TCGA-EQ-8122 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-EQ-A4SO          TCGA-F1-6177          TCGA-F1-6874 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-F1-6875          TCGA-F1-A448          TCGA-FP-7735 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-FP-7829          TCGA-FP-7916          TCGA-FP-7998 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-FP-8099          TCGA-FP-8209          TCGA-FP-8210 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-FP-8211          TCGA-FP-8631          TCGA-FP-A4BE 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HF-7132          TCGA-HF-7133          TCGA-HF-7136 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-8602          TCGA-HU-8604          TCGA-HU-8608 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-8610          TCGA-HU-A4G2          TCGA-HU-A4G3 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4G6          TCGA-HU-A4G8          TCGA-HU-A4G9 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4GC          TCGA-HU-A4GF          TCGA-HU-A4GH 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4GN          TCGA-HU-A4GP          TCGA-HU-A4GT 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4GX          TCGA-HU-A4GY          TCGA-HU-A4H0 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4H2          TCGA-HU-A4H3          TCGA-HU-A4H4 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4H5          TCGA-HU-A4H6          TCGA-HU-A4H8 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4HD          TCGA-IN-7806          TCGA-IN-7808 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-IN-8462          TCGA-IN-8663          TCGA-IP-7968 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C10ORF120 MUTATED        0      0      2
  C10ORF120 WILD-TYPE    106     54     95
D682V6, multiclass
[1] "Remove cluster labels:" "C10ORF120 MUTATED"     
clus
  C10ORF120 MUTATED C10ORF120 WILD-TYPE 
                  2                 255 
         TCGA-B7-5816          TCGA-B7-5818          TCGA-BR-4187 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-4191          TCGA-BR-4201          TCGA-BR-4253 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-4255          TCGA-BR-4256          TCGA-BR-4257 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-4267          TCGA-BR-4279          TCGA-BR-4280 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-4292          TCGA-BR-4294          TCGA-BR-4357 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-4361          TCGA-BR-4362          TCGA-BR-4363 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-4366          TCGA-BR-4368          TCGA-BR-4369 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-4370          TCGA-BR-4371          TCGA-BR-6452 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6453          TCGA-BR-6454          TCGA-BR-6455 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6456          TCGA-BR-6457          TCGA-BR-6458 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6563          TCGA-BR-6564          TCGA-BR-6565 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6566          TCGA-BR-6705          TCGA-BR-6706 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6707          TCGA-BR-6710          TCGA-BR-6801 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6802          TCGA-BR-6803          TCGA-BR-6852 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-7196          TCGA-BR-7197          TCGA-BR-7703 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-7707          TCGA-BR-7715          TCGA-BR-7716 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-7717          TCGA-BR-7722          TCGA-BR-7723 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-7851          TCGA-BR-7901          TCGA-BR-7957 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-7958          TCGA-BR-7959          TCGA-BR-8058 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8059          TCGA-BR-8077          TCGA-BR-8078 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8080          TCGA-BR-8081          TCGA-BR-8284 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8286          TCGA-BR-8289          TCGA-BR-8291 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8297          TCGA-BR-8361          TCGA-BR-8363 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8364          TCGA-BR-8365          TCGA-BR-8366 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8367          TCGA-BR-8368          TCGA-BR-8369 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8371          TCGA-BR-8372          TCGA-BR-8373 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8380          TCGA-BR-8381          TCGA-BR-8382 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8384          TCGA-BR-8483          TCGA-BR-8484 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8485          TCGA-BR-8486          TCGA-BR-8487 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8588          TCGA-BR-8589          TCGA-BR-8590 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8591          TCGA-BR-8592          TCGA-BR-8677 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8678          TCGA-BR-8679          TCGA-BR-8680 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8682          TCGA-BR-8683          TCGA-BR-8686 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8687          TCGA-BR-A44T          TCGA-BR-A452 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A453          TCGA-BR-A4CR          TCGA-BR-A4CS 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A4IU          TCGA-BR-A4IV          TCGA-BR-A4IY 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A4IZ          TCGA-BR-A4J1          TCGA-BR-A4J2 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A4J4          TCGA-BR-A4J6          TCGA-BR-A4J7 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A4J8          TCGA-BR-A4PD          TCGA-BR-A4PE 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A4PF          TCGA-BR-A4QI          TCGA-CD-5798 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-5799          TCGA-CD-5800          TCGA-CD-5801 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-5803          TCGA-CD-5804          TCGA-CD-5813 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-8524          TCGA-CD-8526          TCGA-CD-8528 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-8529          TCGA-CD-8530          TCGA-CD-8531 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-8532          TCGA-CD-8534          TCGA-CD-8535 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-8536          TCGA-CD-A486          TCGA-CD-A487 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-A489          TCGA-CD-A48C          TCGA-CD-A4MG 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-A4MH          TCGA-CD-A4MI          TCGA-CD-A4MJ 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-4301          TCGA-CG-4304          TCGA-CG-4305 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-4306          TCGA-CG-4436          TCGA-CG-4437 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-4438          TCGA-CG-4440          TCGA-CG-4441 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-4443          TCGA-CG-4444          TCGA-CG-4449 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-4462          TCGA-CG-4465          TCGA-CG-4466 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-4469          TCGA-CG-4474          TCGA-CG-4475 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-4476          TCGA-CG-4477          TCGA-CG-5717 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-5718          TCGA-CG-5719          TCGA-CG-5720 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-5721          TCGA-CG-5722          TCGA-CG-5723 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-5724          TCGA-CG-5726          TCGA-CG-5732 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-5734          TCGA-D7-5577          TCGA-D7-5578 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-6518          TCGA-D7-6519          TCGA-D7-6520 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-6521          TCGA-D7-6522          TCGA-D7-6524 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-6525          TCGA-D7-6526          TCGA-D7-6527 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-6528          TCGA-D7-6815          TCGA-D7-6817 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-6818          TCGA-D7-6820          TCGA-D7-6822 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-8570          TCGA-D7-8572          TCGA-D7-8573 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-8574          TCGA-D7-8575          TCGA-D7-8576 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-8578          TCGA-D7-8579          TCGA-D7-A4YT 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-A4YU          TCGA-D7-A4YV          TCGA-D7-A4YX 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-A4YY          TCGA-D7-A4Z0          TCGA-EQ-8122 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-EQ-A4SO          TCGA-F1-6177          TCGA-F1-6874 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-F1-6875          TCGA-F1-A448          TCGA-FP-7735 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-FP-7829          TCGA-FP-7916          TCGA-FP-7998 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-FP-8099          TCGA-FP-8209          TCGA-FP-8210 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-FP-8211          TCGA-FP-8631          TCGA-FP-A4BE 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HF-7132          TCGA-HF-7133          TCGA-HF-7136 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-8602          TCGA-HU-8604          TCGA-HU-8608 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-8610          TCGA-HU-A4G2          TCGA-HU-A4G3 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4G6          TCGA-HU-A4G8          TCGA-HU-A4G9 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4GC          TCGA-HU-A4GF          TCGA-HU-A4GH 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4GN          TCGA-HU-A4GP          TCGA-HU-A4GT 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4GX          TCGA-HU-A4GY          TCGA-HU-A4H0 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4H2          TCGA-HU-A4H3          TCGA-HU-A4H4 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4H5          TCGA-HU-A4H6          TCGA-HU-A4H8 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4HD          TCGA-IN-7806          TCGA-IN-7808 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-IN-8462          TCGA-IN-8663          TCGA-IP-7968 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C10ORF120 MUTATED        4      0      1
  C10ORF120 WILD-TYPE    119     95     70
D682V7, multiclass
        clus
vv       C10ORF120 MUTATED C10ORF120 WILD-TYPE
  CLUS_1                 4                 119
  CLUS_2                 0                  95
  CLUS_3                 1                  70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C10ORF120 MUTATED        4      0      1
  C10ORF120 WILD-TYPE    153     63     68
D682V8, multiclass
        clus
vv       C10ORF120 MUTATED C10ORF120 WILD-TYPE
  CLUS_1                 4                 153
  CLUS_2                 0                  63
  CLUS_3                 1                  68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C10ORF120 MUTATED        1      0      1      0      0      0
  C10ORF120 WILD-TYPE     32     19     58     39     16     45
D682V9, multiclass
[1] "Remove cluster labels:" "C10ORF120 MUTATED"     
clus
  C10ORF120 MUTATED C10ORF120 WILD-TYPE 
                  2                 209 
         TCGA-B7-5816          TCGA-B7-5818          TCGA-BR-6452 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6453          TCGA-BR-6454          TCGA-BR-6455 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6456          TCGA-BR-6457          TCGA-BR-6458 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6563          TCGA-BR-6564          TCGA-BR-6565 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6566          TCGA-BR-6705          TCGA-BR-6706 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6707          TCGA-BR-6710          TCGA-BR-6801 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6802          TCGA-BR-6803          TCGA-BR-6852 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-7196          TCGA-BR-7197          TCGA-BR-7703 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-7707          TCGA-BR-7715          TCGA-BR-7717 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-7723          TCGA-BR-7851          TCGA-BR-7901 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-7957          TCGA-BR-7958          TCGA-BR-7959 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8058          TCGA-BR-8059          TCGA-BR-8077 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8078          TCGA-BR-8080          TCGA-BR-8284 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8286          TCGA-BR-8289          TCGA-BR-8291 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8295          TCGA-BR-8296          TCGA-BR-8297 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8360          TCGA-BR-8361          TCGA-BR-8363 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8364          TCGA-BR-8365          TCGA-BR-8368 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8369          TCGA-BR-8370          TCGA-BR-8371 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8372          TCGA-BR-8373          TCGA-BR-8380 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8381          TCGA-BR-8382          TCGA-BR-8384 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8483          TCGA-BR-8485          TCGA-BR-8486 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8487          TCGA-BR-8588          TCGA-BR-8590 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8591          TCGA-BR-8592          TCGA-BR-8676 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8677          TCGA-BR-8678          TCGA-BR-8679 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8680          TCGA-BR-8682          TCGA-BR-8683 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8687          TCGA-BR-8690          TCGA-BR-A44T 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A452          TCGA-BR-A453          TCGA-BR-A4CQ 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A4CR          TCGA-BR-A4CS          TCGA-BR-A4IU 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A4IV          TCGA-BR-A4IY          TCGA-BR-A4IZ 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A4J1          TCGA-BR-A4J6          TCGA-BR-A4J7 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A4J8          TCGA-BR-A4PD          TCGA-BR-A4QI 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A4QL          TCGA-BR-A4QM          TCGA-CD-5798 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-5799          TCGA-CD-5800          TCGA-CD-5801 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-5802          TCGA-CD-5803          TCGA-CD-5804 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-5813          TCGA-CD-8524          TCGA-CD-8525 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-8526          TCGA-CD-8527          TCGA-CD-8529 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-8530          TCGA-CD-8531          TCGA-CD-8532 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-8534          TCGA-CD-8535          TCGA-CD-8536 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-A486          TCGA-CD-A487          TCGA-CD-A489 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-A48C          TCGA-CD-A4MG          TCGA-CD-A4MH 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-A4MI          TCGA-CG-4437          TCGA-CG-4441 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-4449          TCGA-CG-5717          TCGA-CG-5718 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-5719          TCGA-CG-5720          TCGA-CG-5721 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-5722          TCGA-CG-5723          TCGA-CG-5724 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-5726          TCGA-CG-5727          TCGA-CG-5728 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-5730          TCGA-CG-5732          TCGA-CG-5734 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-5577          TCGA-D7-5578          TCGA-D7-5579 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-6518          TCGA-D7-6519          TCGA-D7-6520 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-6521          TCGA-D7-6522          TCGA-D7-6524 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-6525          TCGA-D7-6526          TCGA-D7-6527 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-6528          TCGA-D7-6815          TCGA-D7-6817 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-6818          TCGA-D7-6820          TCGA-D7-6822 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-8570          TCGA-D7-8572          TCGA-D7-8574 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-8575          TCGA-D7-8576          TCGA-D7-8578 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-8579          TCGA-D7-A4YT          TCGA-D7-A4YU 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-A4YV          TCGA-D7-A4YY          TCGA-D7-A4Z0 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-EQ-5647          TCGA-EQ-8122          TCGA-F1-6177 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-F1-6874          TCGA-F1-6875          TCGA-F1-A448 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-FP-7735          TCGA-FP-7829          TCGA-FP-7998 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-FP-8099          TCGA-FP-8209          TCGA-FP-8210 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-FP-8211          TCGA-FP-8631          TCGA-FP-A4BE 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HF-7132          TCGA-HF-7136          TCGA-HU-8602 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-8604          TCGA-HU-8608          TCGA-HU-A4G3 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4G8          TCGA-HU-A4GC          TCGA-HU-A4GD 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4GF          TCGA-HU-A4GH          TCGA-HU-A4GN 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4GQ          TCGA-HU-A4GT          TCGA-HU-A4GX 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4GY          TCGA-HU-A4H2          TCGA-HU-A4H4 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4H5          TCGA-HU-A4H6          TCGA-HU-A4H8 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-IN-7806          TCGA-IN-7808          TCGA-IN-8462 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-IN-8663          TCGA-IP-7968 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C10ORF120 MUTATED        1      0      1      0      0      0
  C10ORF120 WILD-TYPE     46     39     34     32     23     35
D682V10, multiclass
[1] "Remove cluster labels:" "C10ORF120 MUTATED"     
clus
  C10ORF120 MUTATED C10ORF120 WILD-TYPE 
                  2                 209 
         TCGA-B7-5816          TCGA-B7-5818          TCGA-BR-6452 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6453          TCGA-BR-6454          TCGA-BR-6455 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6456          TCGA-BR-6457          TCGA-BR-6458 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6563          TCGA-BR-6564          TCGA-BR-6565 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6566          TCGA-BR-6705          TCGA-BR-6706 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6707          TCGA-BR-6710          TCGA-BR-6801 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-6802          TCGA-BR-6803          TCGA-BR-6852 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-7196          TCGA-BR-7197          TCGA-BR-7703 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-7707          TCGA-BR-7715          TCGA-BR-7717 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-7723          TCGA-BR-7851          TCGA-BR-7901 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-7957          TCGA-BR-7958          TCGA-BR-7959 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8058          TCGA-BR-8059          TCGA-BR-8077 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8078          TCGA-BR-8080          TCGA-BR-8284 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8286          TCGA-BR-8289          TCGA-BR-8291 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8295          TCGA-BR-8296          TCGA-BR-8297 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8360          TCGA-BR-8361          TCGA-BR-8363 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8364          TCGA-BR-8365          TCGA-BR-8368 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8369          TCGA-BR-8370          TCGA-BR-8371 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8372          TCGA-BR-8373          TCGA-BR-8380 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8381          TCGA-BR-8382          TCGA-BR-8384 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8483          TCGA-BR-8485          TCGA-BR-8486 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8487          TCGA-BR-8588          TCGA-BR-8590 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8591          TCGA-BR-8592          TCGA-BR-8676 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8677          TCGA-BR-8678          TCGA-BR-8679 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8680          TCGA-BR-8682          TCGA-BR-8683 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-8687          TCGA-BR-8690          TCGA-BR-A44T 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A452          TCGA-BR-A453          TCGA-BR-A4CQ 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A4CR          TCGA-BR-A4CS          TCGA-BR-A4IU 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A4IV          TCGA-BR-A4IY          TCGA-BR-A4IZ 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A4J1          TCGA-BR-A4J6          TCGA-BR-A4J7 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A4J8          TCGA-BR-A4PD          TCGA-BR-A4QI 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-BR-A4QL          TCGA-BR-A4QM          TCGA-CD-5798 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-5799          TCGA-CD-5800          TCGA-CD-5801 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-5802          TCGA-CD-5803          TCGA-CD-5804 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-5813          TCGA-CD-8524          TCGA-CD-8525 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-8526          TCGA-CD-8527          TCGA-CD-8529 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-8530          TCGA-CD-8531          TCGA-CD-8532 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-8534          TCGA-CD-8535          TCGA-CD-8536 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-A486          TCGA-CD-A487          TCGA-CD-A489 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-A48C          TCGA-CD-A4MG          TCGA-CD-A4MH 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CD-A4MI          TCGA-CG-4437          TCGA-CG-4441 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-4449          TCGA-CG-5717          TCGA-CG-5718 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-5719          TCGA-CG-5720          TCGA-CG-5721 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-5722          TCGA-CG-5723          TCGA-CG-5724 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-5726          TCGA-CG-5727          TCGA-CG-5728 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-CG-5730          TCGA-CG-5732          TCGA-CG-5734 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-5577          TCGA-D7-5578          TCGA-D7-5579 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-6518          TCGA-D7-6519          TCGA-D7-6520 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-6521          TCGA-D7-6522          TCGA-D7-6524 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-6525          TCGA-D7-6526          TCGA-D7-6527 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-6528          TCGA-D7-6815          TCGA-D7-6817 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-6818          TCGA-D7-6820          TCGA-D7-6822 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-8570          TCGA-D7-8572          TCGA-D7-8574 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-8575          TCGA-D7-8576          TCGA-D7-8578 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-8579          TCGA-D7-A4YT          TCGA-D7-A4YU 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-D7-A4YV          TCGA-D7-A4YY          TCGA-D7-A4Z0 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-EQ-5647          TCGA-EQ-8122          TCGA-F1-6177 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-F1-6874          TCGA-F1-6875          TCGA-F1-A448 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-FP-7735          TCGA-FP-7829          TCGA-FP-7998 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-FP-8099          TCGA-FP-8209          TCGA-FP-8210 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-FP-8211          TCGA-FP-8631          TCGA-FP-A4BE 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HF-7132          TCGA-HF-7136          TCGA-HU-8602 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-8604          TCGA-HU-8608          TCGA-HU-A4G3 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4G8          TCGA-HU-A4GC          TCGA-HU-A4GD 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4GF          TCGA-HU-A4GH          TCGA-HU-A4GN 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4GQ          TCGA-HU-A4GT          TCGA-HU-A4GX 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4GY          TCGA-HU-A4H2          TCGA-HU-A4H4 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-HU-A4H5          TCGA-HU-A4H6          TCGA-HU-A4H8 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-IN-7806          TCGA-IN-7808          TCGA-IN-8462 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 
         TCGA-IN-8663          TCGA-IP-7968 
"C10ORF120 WILD-TYPE" "C10ORF120 WILD-TYPE" 

Clustering(683) Variable = PIK3R1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3R1 MUTATED        2      7      0      1      0
  PIK3R1 WILD-TYPE     77    119     27     42     12
D683V1, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              2               77
  CLUS_2              7              119
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        1      5      0      1
  PIK3R1 WILD-TYPE     70     71     34     62
D683V2, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              5               71
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3R1 MUTATED        2      1      3      0      3
  PIK3R1 WILD-TYPE     14     61     48     65     52
D683V3, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              2               14
  CLUS_2              1               61
  CLUS_3              3               48
  CLUS_4              0               65
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        2      6      0      1
  PIK3R1 WILD-TYPE     96     38     50     56
D683V4, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              6               38
  CLUS_3              0               50
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3R1 MUTATED        3      0      0      4      2
  PIK3R1 WILD-TYPE     59     59     40     33     57
D683V5, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              4               33
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        3      0      6
  PIK3R1 WILD-TYPE    103     54     91
D683V6, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              0               54
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        9      0      1
  PIK3R1 WILD-TYPE    114     95     70
D683V7, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              9              114
  CLUS_2              0               95
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        8      0      2
  PIK3R1 WILD-TYPE    149     63     67
D683V8, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              8              149
  CLUS_2              0               63
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIK3R1 MUTATED        0      2      3      0      1      0
  PIK3R1 WILD-TYPE     33     17     56     39     15     45
D683V9, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              2               17
  CLUS_3              3               56
  CLUS_4              0               39
  CLUS_5              1               15
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIK3R1 MUTATED        3      0      2      0      0      1
  PIK3R1 WILD-TYPE     44     39     33     32     23     34
D683V10, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(684) Variable = DGKD MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DGKD MUTATED        1      4      1      0      0
  DGKD WILD-TYPE     78    122     26     43     12
D684V1, multiclass
        clus
vv       DGKD MUTATED DGKD WILD-TYPE
  CLUS_1            1             78
  CLUS_2            4            122
  CLUS_3            1             26
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DGKD MUTATED        1      3      1      0
  DGKD WILD-TYPE     70     73     33     63
D684V2, multiclass
        clus
vv       DGKD MUTATED DGKD WILD-TYPE
  CLUS_1            1             70
  CLUS_2            3             73
  CLUS_3            1             33
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DGKD MUTATED        0      2      2      0      1
  DGKD WILD-TYPE     16     60     49     65     54
D684V3, multiclass
        clus
vv       DGKD MUTATED DGKD WILD-TYPE
  CLUS_1            0             16
  CLUS_2            2             60
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DGKD MUTATED        2      2      1      0
  DGKD WILD-TYPE     96     42     49     57
D684V4, multiclass
        clus
vv       DGKD MUTATED DGKD WILD-TYPE
  CLUS_1            2             96
  CLUS_2            2             42
  CLUS_3            1             49
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DGKD MUTATED        4      0      0      0      0
  DGKD WILD-TYPE     58     59     40     37     59
D684V5, multiclass
        clus
vv       DGKD MUTATED DGKD WILD-TYPE
  CLUS_1            4             58
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            0             37
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DGKD MUTATED        1      0      3
  DGKD WILD-TYPE    105     54     94
D684V6, multiclass
        clus
vv       DGKD MUTATED DGKD WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            3             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DGKD MUTATED        3      1      2
  DGKD WILD-TYPE    120     94     69
D684V7, multiclass
        clus
vv       DGKD MUTATED DGKD WILD-TYPE
  CLUS_1            3            120
  CLUS_2            1             94
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DGKD MUTATED        4      1      1
  DGKD WILD-TYPE    153     62     68
D684V8, multiclass
        clus
vv       DGKD MUTATED DGKD WILD-TYPE
  CLUS_1            4            153
  CLUS_2            1             62
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DGKD MUTATED        1      0      0      3      0      1
  DGKD WILD-TYPE     32     19     59     36     16     44
D684V9, multiclass
        clus
vv       DGKD MUTATED DGKD WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             19
  CLUS_3            0             59
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DGKD MUTATED        3      1      0      0      0      1
  DGKD WILD-TYPE     44     38     35     32     23     34
D684V10, multiclass
        clus
vv       DGKD MUTATED DGKD WILD-TYPE
  CLUS_1            3             44
  CLUS_2            1             38
  CLUS_3            0             35
  CLUS_4            0             32
  CLUS_5            0             23
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(685) Variable = RDBP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RDBP MUTATED        0      5      2      0      1
  RDBP WILD-TYPE     79    121     25     43     11
D685V1, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            0             79
  CLUS_2            5            121
  CLUS_3            2             25
  CLUS_4            0             43
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RDBP MUTATED        0      4      3      0
  RDBP WILD-TYPE     71     72     31     63
D685V2, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            0             71
  CLUS_2            4             72
  CLUS_3            3             31
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RDBP MUTATED        0      2      1      0      4
  RDBP WILD-TYPE     16     60     50     65     51
D685V3, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            0             16
  CLUS_2            2             60
  CLUS_3            1             50
  CLUS_4            0             65
  CLUS_5            4             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RDBP MUTATED        1      3      2      1
  RDBP WILD-TYPE     97     41     48     56
D685V4, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            1             97
  CLUS_2            3             41
  CLUS_3            2             48
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RDBP MUTATED        6      0      0      1      0
  RDBP WILD-TYPE     56     59     40     36     59
D685V5, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            6             56
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RDBP MUTATED        2      0      5
  RDBP WILD-TYPE    104     54     92
D685V6, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            2            104
  CLUS_2            0             54
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RDBP MUTATED        5      2      1
  RDBP WILD-TYPE    118     93     70
D685V7, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            5            118
  CLUS_2            2             93
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RDBP MUTATED        7      1      0
  RDBP WILD-TYPE    150     62     69
D685V8, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            7            150
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RDBP MUTATED        0      1      1      3      0      1
  RDBP WILD-TYPE     33     18     58     36     16     44
D685V9, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             18
  CLUS_3            1             58
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RDBP MUTATED        2      1      0      0      3      0
  RDBP WILD-TYPE     45     38     35     32     20     35
D685V10, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            2             45
  CLUS_2            1             38
  CLUS_3            0             35
  CLUS_4            0             32
  CLUS_5            3             20
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(686) Variable = LUC7L3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LUC7L3 MUTATED        1      3      0      2      0
  LUC7L3 WILD-TYPE     78    123     27     41     12
D686V1, multiclass
        clus
vv       LUC7L3 MUTATED LUC7L3 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              3              123
  CLUS_3              0               27
  CLUS_4              2               41
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LUC7L3 MUTATED        1      5      0      0
  LUC7L3 WILD-TYPE     70     71     34     63
D686V2, multiclass
        clus
vv       LUC7L3 MUTATED LUC7L3 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              5               71
  CLUS_3              0               34
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LUC7L3 MUTATED        0      5      0      0      0
  LUC7L3 WILD-TYPE     16     57     51     65     55
D686V3, multiclass
        clus
vv       LUC7L3 MUTATED LUC7L3 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              5               57
  CLUS_3              0               51
  CLUS_4              0               65
  CLUS_5              0               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LUC7L3 MUTATED        0      2      3      0
  LUC7L3 WILD-TYPE     98     42     47     57
D686V4, multiclass
        clus
vv       LUC7L3 MUTATED LUC7L3 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              2               42
  CLUS_3              3               47
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LUC7L3 MUTATED        3      0      0      2      1
  LUC7L3 WILD-TYPE     59     59     40     35     58
D686V5, multiclass
        clus
vv       LUC7L3 MUTATED LUC7L3 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              2               35
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LUC7L3 MUTATED        0      1      5
  LUC7L3 WILD-TYPE    106     53     92
D686V6, multiclass
        clus
vv       LUC7L3 MUTATED LUC7L3 WILD-TYPE
  CLUS_1              0              106
  CLUS_2              1               53
  CLUS_3              5               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LUC7L3 MUTATED        4      1      1
  LUC7L3 WILD-TYPE    119     94     70
D686V7, multiclass
        clus
vv       LUC7L3 MUTATED LUC7L3 WILD-TYPE
  CLUS_1              4              119
  CLUS_2              1               94
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LUC7L3 MUTATED        5      0      1
  LUC7L3 WILD-TYPE    152     63     68
D686V8, multiclass
        clus
vv       LUC7L3 MUTATED LUC7L3 WILD-TYPE
  CLUS_1              5              152
  CLUS_2              0               63
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LUC7L3 MUTATED        2      1      0      3      0      0
  LUC7L3 WILD-TYPE     31     18     59     36     16     45
D686V9, multiclass
        clus
vv       LUC7L3 MUTATED LUC7L3 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               18
  CLUS_3              0               59
  CLUS_4              3               36
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LUC7L3 MUTATED        4      0      0      1      1      0
  LUC7L3 WILD-TYPE     43     39     35     31     22     35
D686V10, multiclass
        clus
vv       LUC7L3 MUTATED LUC7L3 WILD-TYPE
  CLUS_1              4               43
  CLUS_2              0               39
  CLUS_3              0               35
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(687) Variable = ROCK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ROCK1 MUTATED        3      9      1      0      2
  ROCK1 WILD-TYPE     76    117     26     43     10
D687V1, multiclass
        clus
vv       ROCK1 MUTATED ROCK1 WILD-TYPE
  CLUS_1             3              76
  CLUS_2             9             117
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROCK1 MUTATED        0      8      1      1
  ROCK1 WILD-TYPE     71     68     33     62
D687V2, multiclass
        clus
vv       ROCK1 MUTATED ROCK1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             8              68
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ROCK1 MUTATED        1      5      2      0      5
  ROCK1 WILD-TYPE     15     57     49     65     50
D687V3, multiclass
        clus
vv       ROCK1 MUTATED ROCK1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             5              57
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROCK1 MUTATED        3      6      3      1
  ROCK1 WILD-TYPE     95     38     47     56
D687V4, multiclass
        clus
vv       ROCK1 MUTATED ROCK1 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             6              38
  CLUS_3             3              47
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ROCK1 MUTATED        9      1      1      2      1
  ROCK1 WILD-TYPE     53     58     39     35     58
D687V5, multiclass
        clus
vv       ROCK1 MUTATED ROCK1 WILD-TYPE
  CLUS_1             9              53
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             2              35
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ROCK1 MUTATED        2      1     11
  ROCK1 WILD-TYPE    104     53     86
D687V6, multiclass
        clus
vv       ROCK1 MUTATED ROCK1 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              53
  CLUS_3            11              86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ROCK1 MUTATED       11      1      4
  ROCK1 WILD-TYPE    112     94     67
D687V7, multiclass
        clus
vv       ROCK1 MUTATED ROCK1 WILD-TYPE
  CLUS_1            11             112
  CLUS_2             1              94
  CLUS_3             4              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ROCK1 MUTATED       14      1      1
  ROCK1 WILD-TYPE    143     62     68
D687V8, multiclass
        clus
vv       ROCK1 MUTATED ROCK1 WILD-TYPE
  CLUS_1            14             143
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ROCK1 MUTATED        2      0      3      2      0      1
  ROCK1 WILD-TYPE     31     19     56     37     16     44
D687V9, multiclass
        clus
vv       ROCK1 MUTATED ROCK1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              19
  CLUS_3             3              56
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ROCK1 MUTATED        4      1      1      2      0      0
  ROCK1 WILD-TYPE     43     38     34     30     23     35
D687V10, multiclass
        clus
vv       ROCK1 MUTATED ROCK1 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             1              38
  CLUS_3             1              34
  CLUS_4             2              30
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(688) Variable = WWP2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WWP2 MUTATED        0     12      0      0      0
  WWP2 WILD-TYPE     79    114     27     43     12
D688V1, multiclass
        clus
vv       WWP2 MUTATED WWP2 WILD-TYPE
  CLUS_1            0             79
  CLUS_2           12            114
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WWP2 MUTATED        0      2      3      5
  WWP2 WILD-TYPE     71     74     31     58
D688V2, multiclass
        clus
vv       WWP2 MUTATED WWP2 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            2             74
  CLUS_3            3             31
  CLUS_4            5             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WWP2 MUTATED        2      7      0      0      1
  WWP2 WILD-TYPE     14     55     51     65     54
D688V3, multiclass
        clus
vv       WWP2 MUTATED WWP2 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            7             55
  CLUS_3            0             51
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WWP2 MUTATED        3      3      4      0
  WWP2 WILD-TYPE     95     41     46     57
D688V4, multiclass
        clus
vv       WWP2 MUTATED WWP2 WILD-TYPE
  CLUS_1            3             95
  CLUS_2            3             41
  CLUS_3            4             46
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WWP2 MUTATED        9      0      1      1      0
  WWP2 WILD-TYPE     53     59     39     36     59
D688V5, multiclass
        clus
vv       WWP2 MUTATED WWP2 WILD-TYPE
  CLUS_1            9             53
  CLUS_2            0             59
  CLUS_3            1             39
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WWP2 MUTATED        5      1      5
  WWP2 WILD-TYPE    101     53     92
D688V6, multiclass
        clus
vv       WWP2 MUTATED WWP2 WILD-TYPE
  CLUS_1            5            101
  CLUS_2            1             53
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WWP2 MUTATED       10      1      1
  WWP2 WILD-TYPE    113     94     70
D688V7, multiclass
        clus
vv       WWP2 MUTATED WWP2 WILD-TYPE
  CLUS_1           10            113
  CLUS_2            1             94
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WWP2 MUTATED       10      1      1
  WWP2 WILD-TYPE    147     62     68
D688V8, multiclass
        clus
vv       WWP2 MUTATED WWP2 WILD-TYPE
  CLUS_1           10            147
  CLUS_2            1             62
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WWP2 MUTATED        0      1      4      5      0      0
  WWP2 WILD-TYPE     33     18     55     34     16     45
D688V9, multiclass
        clus
vv       WWP2 MUTATED WWP2 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            1             18
  CLUS_3            4             55
  CLUS_4            5             34
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WWP2 MUTATED        2      1      4      0      2      1
  WWP2 WILD-TYPE     45     38     31     32     21     34
D688V10, multiclass
        clus
vv       WWP2 MUTATED WWP2 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            1             38
  CLUS_3            4             31
  CLUS_4            0             32
  CLUS_5            2             21
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(689) Variable = STAT6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAT6 MUTATED        0      3      0      0      0
  STAT6 WILD-TYPE     79    123     27     43     12
D689V1, multiclass
        clus
vv       STAT6 MUTATED STAT6 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             3             123
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAT6 MUTATED        0      2      0      0
  STAT6 WILD-TYPE     71     74     34     63
D689V2, multiclass
[1] "Remove cluster labels:" "STAT6 MUTATED"         
clus
  STAT6 MUTATED STAT6 WILD-TYPE 
              2             242 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8589 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U      TCGA-BR-A452 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J6 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-BR-A4QM      TCGA-CD-5798 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-A486      TCGA-CD-A487 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4437 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-FP-A4BE      TCGA-FP-A4BF      TCGA-HF-7132      TCGA-HF-7133 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HJ-7597      TCGA-HU-8243      TCGA-HU-8245 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-8249      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4G3      TCGA-HU-A4G6 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4G8      TCGA-HU-A4G9      TCGA-HU-A4GC      TCGA-HU-A4GD 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GP 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H0      TCGA-HU-A4H2      TCGA-HU-A4H3 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-IN-8663      TCGA-IP-7968 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAT6 MUTATED        0      1      0      0      2
  STAT6 WILD-TYPE     16     61     51     65     53
D689V3, multiclass
        clus
vv       STAT6 MUTATED STAT6 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              61
  CLUS_3             0              51
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAT6 MUTATED        0      3      0      0
  STAT6 WILD-TYPE     98     41     50     57
D689V4, multiclass
        clus
vv       STAT6 MUTATED STAT6 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             3              41
  CLUS_3             0              50
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAT6 MUTATED        2      0      0      0      0
  STAT6 WILD-TYPE     60     59     40     37     59
D689V5, multiclass
[1] "Remove cluster labels:" "STAT6 MUTATED"         
clus
  STAT6 MUTATED STAT6 WILD-TYPE 
              2             255 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4187      TCGA-BR-4191 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-4257      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-4292      TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8297      TCGA-BR-8361      TCGA-BR-8363 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8371      TCGA-BR-8372 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8589 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8677 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-A44T 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CR      TCGA-BR-A4CS 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J6 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-CD-5798      TCGA-CD-5799 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5803      TCGA-CD-5804 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8526      TCGA-CD-8528 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-A486      TCGA-CD-A487 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-A489      TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4301      TCGA-CG-4304 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4442 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4462 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4474 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5717 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-FP-A4BE      TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7136 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608      TCGA-HU-8610 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4G2      TCGA-HU-A4G3      TCGA-HU-A4G6      TCGA-HU-A4G8 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4G9      TCGA-HU-A4GC      TCGA-HU-A4GF      TCGA-HU-A4GH 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GT      TCGA-HU-A4GU 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H0      TCGA-HU-A4H2 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4H8      TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAT6 MUTATED        0      0      2
  STAT6 WILD-TYPE    106     54     95
D689V6, multiclass
[1] "Remove cluster labels:" "STAT6 MUTATED"         
clus
  STAT6 MUTATED STAT6 WILD-TYPE 
              2             255 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4187      TCGA-BR-4191 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-4257      TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-4292      TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8297      TCGA-BR-8361      TCGA-BR-8363 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8371      TCGA-BR-8372 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8589 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8677 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-A44T 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CR      TCGA-BR-A4CS 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J6 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-CD-5798      TCGA-CD-5799 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5803      TCGA-CD-5804 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8526      TCGA-CD-8528 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-A486      TCGA-CD-A487 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-A489      TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4301      TCGA-CG-4304 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4442 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4462 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4474 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5717 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-FP-A4BE      TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7136 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608      TCGA-HU-8610 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4G2      TCGA-HU-A4G3      TCGA-HU-A4G6      TCGA-HU-A4G8 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4G9      TCGA-HU-A4GC      TCGA-HU-A4GF      TCGA-HU-A4GH 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GT      TCGA-HU-A4GU 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H0      TCGA-HU-A4H2 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4H8      TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAT6 MUTATED        2      0      1
  STAT6 WILD-TYPE    121     95     70
D689V7, multiclass
        clus
vv       STAT6 MUTATED STAT6 WILD-TYPE
  CLUS_1             2             121
  CLUS_2             0              95
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAT6 MUTATED        3      0      0
  STAT6 WILD-TYPE    154     63     69
D689V8, multiclass
        clus
vv       STAT6 MUTATED STAT6 WILD-TYPE
  CLUS_1             3             154
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STAT6 MUTATED        1      0      0      1      0      0
  STAT6 WILD-TYPE     32     19     59     38     16     45
D689V9, multiclass
[1] "Remove cluster labels:" "STAT6 MUTATED"         
clus
  STAT6 MUTATED STAT6 WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48C 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CG-4437 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717      TCGA-CG-5718 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-EQ-5647 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7998 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132      TCGA-HF-7136 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC      TCGA-HU-A4GD 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-IP-7968 
"STAT6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STAT6 MUTATED        2      0      0      0      0      0
  STAT6 WILD-TYPE     45     39     35     32     23     35
D689V10, multiclass
[1] "Remove cluster labels:" "STAT6 MUTATED"         
clus
  STAT6 MUTATED STAT6 WILD-TYPE 
              2             209 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48C 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CG-4437 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717      TCGA-CG-5718 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-EQ-5647 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7998 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132      TCGA-HF-7136 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC      TCGA-HU-A4GD 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" "STAT6 WILD-TYPE" 
     TCGA-IP-7968 
"STAT6 WILD-TYPE" 

Clustering(690) Variable = CELSR1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CELSR1 MUTATED        0     27      2      5      1
  CELSR1 WILD-TYPE     79     99     25     38     11
D690V1, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1              0               79
  CLUS_2             27               99
  CLUS_3              2               25
  CLUS_4              5               38
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CELSR1 MUTATED        3     18      4      4
  CELSR1 WILD-TYPE     68     58     30     59
D690V2, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1              3               68
  CLUS_2             18               58
  CLUS_3              4               30
  CLUS_4              4               59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CELSR1 MUTATED        2      8     11      2      7
  CELSR1 WILD-TYPE     14     54     40     63     48
D690V3, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1              2               14
  CLUS_2              8               54
  CLUS_3             11               40
  CLUS_4              2               63
  CLUS_5              7               48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CELSR1 MUTATED       11     12      6      1
  CELSR1 WILD-TYPE     87     32     44     56
D690V4, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1             11               87
  CLUS_2             12               32
  CLUS_3              6               44
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CELSR1 MUTATED       12      5      7      7      1
  CELSR1 WILD-TYPE     50     54     33     30     58
D690V5, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1             12               50
  CLUS_2              5               54
  CLUS_3              7               33
  CLUS_4              7               30
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CELSR1 MUTATED        6      4     22
  CELSR1 WILD-TYPE    100     50     75
D690V6, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1              6              100
  CLUS_2              4               50
  CLUS_3             22               75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CELSR1 MUTATED       27      6      2
  CELSR1 WILD-TYPE     96     89     69
D690V7, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1             27               96
  CLUS_2              6               89
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CELSR1 MUTATED       27      3      5
  CELSR1 WILD-TYPE    130     60     64
D690V8, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1             27              130
  CLUS_2              3               60
  CLUS_3              5               64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CELSR1 MUTATED        3      3      9      6      1      3
  CELSR1 WILD-TYPE     30     16     50     33     15     42
D690V9, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              3               16
  CLUS_3              9               50
  CLUS_4              6               33
  CLUS_5              1               15
  CLUS_6              3               42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CELSR1 MUTATED        7      2      7      4      3      2
  CELSR1 WILD-TYPE     40     37     28     28     20     33
D690V10, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1              7               40
  CLUS_2              2               37
  CLUS_3              7               28
  CLUS_4              4               28
  CLUS_5              3               20
  CLUS_6              2               33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(691) Variable = MACF1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MACF1 MUTATED        7     27      3      5      2
  MACF1 WILD-TYPE     72     99     24     38     10
D691V1, multiclass
        clus
vv       MACF1 MUTATED MACF1 WILD-TYPE
  CLUS_1             7              72
  CLUS_2            27              99
  CLUS_3             3              24
  CLUS_4             5              38
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MACF1 MUTATED        6     22      5      5
  MACF1 WILD-TYPE     65     54     29     58
D691V2, multiclass
        clus
vv       MACF1 MUTATED MACF1 WILD-TYPE
  CLUS_1             6              65
  CLUS_2            22              54
  CLUS_3             5              29
  CLUS_4             5              58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MACF1 MUTATED        4     14     11      2      7
  MACF1 WILD-TYPE     12     48     40     63     48
D691V3, multiclass
        clus
vv       MACF1 MUTATED MACF1 WILD-TYPE
  CLUS_1             4              12
  CLUS_2            14              48
  CLUS_3            11              40
  CLUS_4             2              63
  CLUS_5             7              48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MACF1 MUTATED       13     14      7      4
  MACF1 WILD-TYPE     85     30     43     53
D691V4, multiclass
        clus
vv       MACF1 MUTATED MACF1 WILD-TYPE
  CLUS_1            13              85
  CLUS_2            14              30
  CLUS_3             7              43
  CLUS_4             4              53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MACF1 MUTATED       18      4      5      7      7
  MACF1 WILD-TYPE     44     55     35     30     52
D691V5, multiclass
        clus
vv       MACF1 MUTATED MACF1 WILD-TYPE
  CLUS_1            18              44
  CLUS_2             4              55
  CLUS_3             5              35
  CLUS_4             7              30
  CLUS_5             7              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MACF1 MUTATED       12      5     24
  MACF1 WILD-TYPE     94     49     73
D691V6, multiclass
        clus
vv       MACF1 MUTATED MACF1 WILD-TYPE
  CLUS_1            12              94
  CLUS_2             5              49
  CLUS_3            24              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MACF1 MUTATED       30      8      7
  MACF1 WILD-TYPE     93     87     64
D691V7, multiclass
        clus
vv       MACF1 MUTATED MACF1 WILD-TYPE
  CLUS_1            30              93
  CLUS_2             8              87
  CLUS_3             7              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MACF1 MUTATED       34      5      6
  MACF1 WILD-TYPE    123     58     63
D691V8, multiclass
        clus
vv       MACF1 MUTATED MACF1 WILD-TYPE
  CLUS_1            34             123
  CLUS_2             5              58
  CLUS_3             6              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MACF1 MUTATED        7      6     10      7      0      3
  MACF1 WILD-TYPE     26     13     49     32     16     42
D691V9, multiclass
        clus
vv       MACF1 MUTATED MACF1 WILD-TYPE
  CLUS_1             7              26
  CLUS_2             6              13
  CLUS_3            10              49
  CLUS_4             7              32
  CLUS_5             0              16
  CLUS_6             3              42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MACF1 MUTATED       14      3      6      2      5      3
  MACF1 WILD-TYPE     33     36     29     30     18     32
D691V10, multiclass
        clus
vv       MACF1 MUTATED MACF1 WILD-TYPE
  CLUS_1            14              33
  CLUS_2             3              36
  CLUS_3             6              29
  CLUS_4             2              30
  CLUS_5             5              18
  CLUS_6             3              32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(692) Variable = DYRK1A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYRK1A MUTATED        0      7      0      1      0
  DYRK1A WILD-TYPE     79    119     27     42     12
D692V1, multiclass
        clus
vv       DYRK1A MUTATED DYRK1A WILD-TYPE
  CLUS_1              0               79
  CLUS_2              7              119
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYRK1A MUTATED        0      4      2      2
  DYRK1A WILD-TYPE     71     72     32     61
D692V2, multiclass
        clus
vv       DYRK1A MUTATED DYRK1A WILD-TYPE
  CLUS_1              0               71
  CLUS_2              4               72
  CLUS_3              2               32
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYRK1A MUTATED        0      3      0      1      3
  DYRK1A WILD-TYPE     16     59     51     64     52
D692V3, multiclass
        clus
vv       DYRK1A MUTATED DYRK1A WILD-TYPE
  CLUS_1              0               16
  CLUS_2              3               59
  CLUS_3              0               51
  CLUS_4              1               64
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYRK1A MUTATED        1      3      2      1
  DYRK1A WILD-TYPE     97     41     48     56
D692V4, multiclass
        clus
vv       DYRK1A MUTATED DYRK1A WILD-TYPE
  CLUS_1              1               97
  CLUS_2              3               41
  CLUS_3              2               48
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYRK1A MUTATED        5      1      1      0      1
  DYRK1A WILD-TYPE     57     58     39     37     58
D692V5, multiclass
        clus
vv       DYRK1A MUTATED DYRK1A WILD-TYPE
  CLUS_1              5               57
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              0               37
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DYRK1A MUTATED        3      0      5
  DYRK1A WILD-TYPE    103     54     92
D692V6, multiclass
        clus
vv       DYRK1A MUTATED DYRK1A WILD-TYPE
  CLUS_1              3              103
  CLUS_2              0               54
  CLUS_3              5               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DYRK1A MUTATED        8      1      0
  DYRK1A WILD-TYPE    115     94     71
D692V7, multiclass
        clus
vv       DYRK1A MUTATED DYRK1A WILD-TYPE
  CLUS_1              8              115
  CLUS_2              1               94
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DYRK1A MUTATED        8      1      0
  DYRK1A WILD-TYPE    149     62     69
D692V8, multiclass
        clus
vv       DYRK1A MUTATED DYRK1A WILD-TYPE
  CLUS_1              8              149
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DYRK1A MUTATED        2      0      3      2      0      1
  DYRK1A WILD-TYPE     31     19     56     37     16     44
D692V9, multiclass
        clus
vv       DYRK1A MUTATED DYRK1A WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               19
  CLUS_3              3               56
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DYRK1A MUTATED        3      1      2      2      0      0
  DYRK1A WILD-TYPE     44     38     33     30     23     35
D692V10, multiclass
        clus
vv       DYRK1A MUTATED DYRK1A WILD-TYPE
  CLUS_1              3               44
  CLUS_2              1               38
  CLUS_3              2               33
  CLUS_4              2               30
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(693) Variable = TXLNG MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TXLNG MUTATED        0      6      1      0      0
  TXLNG WILD-TYPE     79    120     26     43     12
D693V1, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXLNG MUTATED        0      4      1      0
  TXLNG WILD-TYPE     71     72     33     63
D693V2, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             0              71
  CLUS_2             4              72
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TXLNG MUTATED        0      1      2      0      3
  TXLNG WILD-TYPE     16     61     49     65     52
D693V3, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              61
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXLNG MUTATED        0      5      0      1
  TXLNG WILD-TYPE     98     39     50     56
D693V4, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             0              98
  CLUS_2             5              39
  CLUS_3             0              50
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TXLNG MUTATED        2      1      0      2      0
  TXLNG WILD-TYPE     60     58     40     35     59
D693V5, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TXLNG MUTATED        0      1      4
  TXLNG WILD-TYPE    106     53     93
D693V6, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             0             106
  CLUS_2             1              53
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TXLNG MUTATED        6      0      1
  TXLNG WILD-TYPE    117     95     70
D693V7, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             6             117
  CLUS_2             0              95
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TXLNG MUTATED        6      0      1
  TXLNG WILD-TYPE    151     63     68
D693V8, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             6             151
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TXLNG MUTATED        1      2      1      1      0      0
  TXLNG WILD-TYPE     32     17     58     38     16     45
D693V9, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              17
  CLUS_3             1              58
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TXLNG MUTATED        2      0      1      1      1      0
  TXLNG WILD-TYPE     45     39     34     31     22     35
D693V10, multiclass
        clus
vv       TXLNG MUTATED TXLNG WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(694) Variable = OR10J3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR10J3 MUTATED        5      1      1      1      0
  OR10J3 WILD-TYPE     74    125     26     42     12
D694V1, multiclass
        clus
vv       OR10J3 MUTATED OR10J3 WILD-TYPE
  CLUS_1              5               74
  CLUS_2              1              125
  CLUS_3              1               26
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR10J3 MUTATED        4      1      0      1
  OR10J3 WILD-TYPE     67     75     34     62
D694V2, multiclass
        clus
vv       OR10J3 MUTATED OR10J3 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              1               75
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR10J3 MUTATED        4      0      0      1      2
  OR10J3 WILD-TYPE     12     62     51     64     53
D694V3, multiclass
        clus
vv       OR10J3 MUTATED OR10J3 WILD-TYPE
  CLUS_1              4               12
  CLUS_2              0               62
  CLUS_3              0               51
  CLUS_4              1               64
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR10J3 MUTATED        5      1      0      1
  OR10J3 WILD-TYPE     93     43     50     56
D694V4, multiclass
        clus
vv       OR10J3 MUTATED OR10J3 WILD-TYPE
  CLUS_1              5               93
  CLUS_2              1               43
  CLUS_3              0               50
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR10J3 MUTATED        2      0      1      1      4
  OR10J3 WILD-TYPE     60     59     39     36     55
D694V5, multiclass
        clus
vv       OR10J3 MUTATED OR10J3 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              1               36
  CLUS_5              4               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10J3 MUTATED        4      0      4
  OR10J3 WILD-TYPE    102     54     93
D694V6, multiclass
        clus
vv       OR10J3 MUTATED OR10J3 WILD-TYPE
  CLUS_1              4              102
  CLUS_2              0               54
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10J3 MUTATED        3      1      4
  OR10J3 WILD-TYPE    120     94     67
D694V7, multiclass
        clus
vv       OR10J3 MUTATED OR10J3 WILD-TYPE
  CLUS_1              3              120
  CLUS_2              1               94
  CLUS_3              4               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10J3 MUTATED        5      0      3
  OR10J3 WILD-TYPE    152     63     66
D694V8, multiclass
        clus
vv       OR10J3 MUTATED OR10J3 WILD-TYPE
  CLUS_1              5              152
  CLUS_2              0               63
  CLUS_3              3               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR10J3 MUTATED        2      0      1      0      1      1
  OR10J3 WILD-TYPE     31     19     58     39     15     44
D694V9, multiclass
        clus
vv       OR10J3 MUTATED OR10J3 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               19
  CLUS_3              1               58
  CLUS_4              0               39
  CLUS_5              1               15
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR10J3 MUTATED        1      0      1      1      0      2
  OR10J3 WILD-TYPE     46     39     34     31     23     33
D694V10, multiclass
        clus
vv       OR10J3 MUTATED OR10J3 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              2               33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(695) Variable = CDX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDX2 MUTATED        0      2      0      1      0
  CDX2 WILD-TYPE     79    124     27     42     12
D695V1, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            2            124
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDX2 MUTATED        0      1      1      0
  CDX2 WILD-TYPE     71     75     33     63
D695V2, multiclass
[1] "Remove cluster labels:" "CDX2 MUTATED"          
clus
  CDX2 MUTATED CDX2 WILD-TYPE 
             2            242 
    TCGA-B7-5818     TCGA-BR-6453     TCGA-BR-6454     TCGA-BR-6455 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-6456     TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6563 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566     TCGA-BR-6705 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6710     TCGA-BR-6801 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-7959     TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8077 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8078     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8286     TCGA-BR-8289     TCGA-BR-8291     TCGA-BR-8295 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8296     TCGA-BR-8297     TCGA-BR-8360     TCGA-BR-8361 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365     TCGA-BR-8366 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8367     TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373     TCGA-BR-8380 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8484     TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8487 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8588     TCGA-BR-8589     TCGA-BR-8590     TCGA-BR-8591 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677     TCGA-BR-8678 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682     TCGA-BR-8683 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8686     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-A44U     TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-A4CR     TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J2 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-A4J4     TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-A4PD     TCGA-BR-A4PE     TCGA-BR-A4PF     TCGA-BR-A4QI 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CD-5804     TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CD-8526     TCGA-CD-8527     TCGA-CD-8528     TCGA-CD-8529 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8534 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CD-A489     TCGA-CD-A48A     TCGA-CD-A48C     TCGA-CD-A4MG 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4437 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YX     TCGA-D7-A4YY     TCGA-D7-A4Z0 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-EQ-5647     TCGA-EQ-8122     TCGA-EQ-A4SO     TCGA-F1-6177 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-F1-6874     TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7735 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211     TCGA-FP-8631 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-FP-A4BE     TCGA-FP-A4BF     TCGA-HF-7132     TCGA-HF-7133 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-HF-7136     TCGA-HJ-7597     TCGA-HU-8243     TCGA-HU-8245 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-HU-8249     TCGA-HU-8602     TCGA-HU-8604     TCGA-HU-8608 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4G3     TCGA-HU-A4G6 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-HU-A4G8     TCGA-HU-A4G9     TCGA-HU-A4GC     TCGA-HU-A4GD 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GN     TCGA-HU-A4GP 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-HU-A4GQ     TCGA-HU-A4GT     TCGA-HU-A4GU     TCGA-HU-A4GX 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-HU-A4GY     TCGA-HU-A4H0     TCGA-HU-A4H2     TCGA-HU-A4H3 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6     TCGA-HU-A4H8 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-HU-A4HD     TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-IN-8663     TCGA-IP-7968 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDX2 MUTATED        0      1      1      1      0
  CDX2 WILD-TYPE     16     61     50     64     55
D695V3, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            1             61
  CLUS_3            1             50
  CLUS_4            1             64
  CLUS_5            0             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDX2 MUTATED        0      2      0      1
  CDX2 WILD-TYPE     98     42     50     56
D695V4, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            0             98
  CLUS_2            2             42
  CLUS_3            0             50
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDX2 MUTATED        2      1      0      0      0
  CDX2 WILD-TYPE     60     58     40     37     59
D695V5, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            2             60
  CLUS_2            1             58
  CLUS_3            0             40
  CLUS_4            0             37
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDX2 MUTATED        2      0      1
  CDX2 WILD-TYPE    104     54     96
D695V6, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            0             54
  CLUS_3            1             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDX2 MUTATED        3      0      0
  CDX2 WILD-TYPE    120     95     71
D695V7, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            3            120
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDX2 MUTATED        3      0      0
  CDX2 WILD-TYPE    154     63     69
D695V8, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            3            154
  CLUS_2            0             63
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDX2 MUTATED        0      0      2      0      0      0
  CDX2 WILD-TYPE     33     19     57     39     16     45
D695V9, multiclass
[1] "Remove cluster labels:" "CDX2 MUTATED"          
clus
  CDX2 MUTATED CDX2 WILD-TYPE 
             2            209 
    TCGA-B7-5818     TCGA-BR-6453     TCGA-BR-6454     TCGA-BR-6455 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-6456     TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6563 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566     TCGA-BR-6705 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6710     TCGA-BR-6801 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-7717     TCGA-BR-7723     TCGA-BR-7851     TCGA-BR-7901 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959     TCGA-BR-8058 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8059     TCGA-BR-8077     TCGA-BR-8078     TCGA-BR-8080 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289     TCGA-BR-8291 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8297     TCGA-BR-8360 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370     TCGA-BR-8371 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8372     TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8485 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8590 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J6     TCGA-BR-A4J7 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI     TCGA-BR-A4QL 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CD-8532     TCGA-CD-8534     TCGA-CD-8535     TCGA-CD-8536 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489     TCGA-CD-A48C 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CG-4437 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5717     TCGA-CG-5718 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D7-8572     TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YY     TCGA-D7-A4Z0     TCGA-EQ-5647 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829     TCGA-FP-7998 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-FP-8631     TCGA-FP-A4BE     TCGA-HF-7132     TCGA-HF-7136 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604     TCGA-HU-8608 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC     TCGA-HU-A4GD 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GN     TCGA-HU-A4GQ 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-HU-A4GT     TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H2 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6     TCGA-HU-A4H8 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-IP-7968 
"CDX2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDX2 MUTATED        0      0      2      0      0      0
  CDX2 WILD-TYPE     47     39     33     32     23     35
D695V10, multiclass
[1] "Remove cluster labels:" "CDX2 MUTATED"          
clus
  CDX2 MUTATED CDX2 WILD-TYPE 
             2            209 
    TCGA-B7-5818     TCGA-BR-6453     TCGA-BR-6454     TCGA-BR-6455 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-6456     TCGA-BR-6457     TCGA-BR-6458     TCGA-BR-6563 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566     TCGA-BR-6705 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6710     TCGA-BR-6801 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7707     TCGA-BR-7715 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-7717     TCGA-BR-7723     TCGA-BR-7851     TCGA-BR-7901 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959     TCGA-BR-8058 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8059     TCGA-BR-8077     TCGA-BR-8078     TCGA-BR-8080 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289     TCGA-BR-8291 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8297     TCGA-BR-8360 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370     TCGA-BR-8371 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8372     TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8485 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8590 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J6     TCGA-BR-A4J7 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI     TCGA-BR-A4QL 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CD-8532     TCGA-CD-8534     TCGA-CD-8535     TCGA-CD-8536 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489     TCGA-CD-A48C 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CG-4437 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5717     TCGA-CG-5718 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D7-8572     TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YY     TCGA-D7-A4Z0     TCGA-EQ-5647 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829     TCGA-FP-7998 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-FP-8631     TCGA-FP-A4BE     TCGA-HF-7132     TCGA-HF-7136 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604     TCGA-HU-8608 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC     TCGA-HU-A4GD 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GN     TCGA-HU-A4GQ 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-HU-A4GT     TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H2 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6     TCGA-HU-A4H8 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" "CDX2 WILD-TYPE" 
    TCGA-IP-7968 
"CDX2 WILD-TYPE" 

Clustering(696) Variable = ZMIZ1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMIZ1 MUTATED        0     12      0      1      2
  ZMIZ1 WILD-TYPE     79    114     27     42     10
D696V1, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2            12             114
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        0      9      1      1
  ZMIZ1 WILD-TYPE     71     67     33     62
D696V2, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             9              67
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMIZ1 MUTATED        0      3      4      0      6
  ZMIZ1 WILD-TYPE     16     59     47     65     49
D696V3, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              59
  CLUS_3             4              47
  CLUS_4             0              65
  CLUS_5             6              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        4      7      1      1
  ZMIZ1 WILD-TYPE     94     37     49     56
D696V4, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             4              94
  CLUS_2             7              37
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMIZ1 MUTATED        6      1      1      3      0
  ZMIZ1 WILD-TYPE     56     58     39     34     59
D696V5, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        1      1      9
  ZMIZ1 WILD-TYPE    105     53     88
D696V6, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             1              53
  CLUS_3             9              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED       12      2      1
  ZMIZ1 WILD-TYPE    111     93     70
D696V7, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1            12             111
  CLUS_2             2              93
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED       13      2      0
  ZMIZ1 WILD-TYPE    144     61     69
D696V8, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1            13             144
  CLUS_2             2              61
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZMIZ1 MUTATED        1      2      3      2      0      1
  ZMIZ1 WILD-TYPE     32     17     56     37     16     44
D696V9, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              17
  CLUS_3             3              56
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZMIZ1 MUTATED        3      1      2      2      1      0
  ZMIZ1 WILD-TYPE     44     38     33     30     22     35
D696V10, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             1              38
  CLUS_3             2              33
  CLUS_4             2              30
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(697) Variable = MMP10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP10 MUTATED        1      6      0      0      1
  MMP10 WILD-TYPE     78    120     27     43     11
D697V1, multiclass
        clus
vv       MMP10 MUTATED MMP10 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP10 MUTATED        1      6      0      1
  MMP10 WILD-TYPE     70     70     34     62
D697V2, multiclass
        clus
vv       MMP10 MUTATED MMP10 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             6              70
  CLUS_3             0              34
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP10 MUTATED        1      4      0      0      2
  MMP10 WILD-TYPE     15     58     51     65     53
D697V3, multiclass
        clus
vv       MMP10 MUTATED MMP10 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             4              58
  CLUS_3             0              51
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP10 MUTATED        1      2      4      0
  MMP10 WILD-TYPE     97     42     46     57
D697V4, multiclass
        clus
vv       MMP10 MUTATED MMP10 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             2              42
  CLUS_3             4              46
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP10 MUTATED        4      0      0      1      0
  MMP10 WILD-TYPE     58     59     40     36     59
D697V5, multiclass
        clus
vv       MMP10 MUTATED MMP10 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP10 MUTATED        1      1      3
  MMP10 WILD-TYPE    105     53     94
D697V6, multiclass
        clus
vv       MMP10 MUTATED MMP10 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             1              53
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP10 MUTATED        4      2      2
  MMP10 WILD-TYPE    119     93     69
D697V7, multiclass
        clus
vv       MMP10 MUTATED MMP10 WILD-TYPE
  CLUS_1             4             119
  CLUS_2             2              93
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP10 MUTATED        7      0      1
  MMP10 WILD-TYPE    150     63     68
D697V8, multiclass
        clus
vv       MMP10 MUTATED MMP10 WILD-TYPE
  CLUS_1             7             150
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MMP10 MUTATED        2      0      2      2      0      0
  MMP10 WILD-TYPE     31     19     57     37     16     45
D697V9, multiclass
        clus
vv       MMP10 MUTATED MMP10 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              19
  CLUS_3             2              57
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MMP10 MUTATED        1      0      2      1      2      0
  MMP10 WILD-TYPE     46     39     33     31     21     35
D697V10, multiclass
        clus
vv       MMP10 MUTATED MMP10 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             1              31
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(698) Variable = BCL2L14 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL2L14 MUTATED        1      2      0      0      0
  BCL2L14 WILD-TYPE     78    124     27     43     12
D698V1, multiclass
        clus
vv       BCL2L14 MUTATED BCL2L14 WILD-TYPE
  CLUS_1               1                78
  CLUS_2               2               124
  CLUS_3               0                27
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL2L14 MUTATED        0      2      0      0
  BCL2L14 WILD-TYPE     71     74     34     63
D698V2, multiclass
[1] "Remove cluster labels:" "BCL2L14 MUTATED"       
clus
  BCL2L14 MUTATED BCL2L14 WILD-TYPE 
                2               242 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6453 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-7707        TCGA-BR-7715        TCGA-BR-7716        TCGA-BR-7717 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-7722        TCGA-BR-7723        TCGA-BR-7851        TCGA-BR-7901 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-7957        TCGA-BR-7958        TCGA-BR-7959        TCGA-BR-8058 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8059        TCGA-BR-8077        TCGA-BR-8078        TCGA-BR-8080 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8081        TCGA-BR-8284        TCGA-BR-8286        TCGA-BR-8289 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8296        TCGA-BR-8297 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8360        TCGA-BR-8361        TCGA-BR-8363        TCGA-BR-8364 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8365        TCGA-BR-8366        TCGA-BR-8367        TCGA-BR-8368 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8369        TCGA-BR-8370        TCGA-BR-8371        TCGA-BR-8372 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8373        TCGA-BR-8380        TCGA-BR-8381        TCGA-BR-8382 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8384        TCGA-BR-8483        TCGA-BR-8484        TCGA-BR-8485 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8486        TCGA-BR-8487        TCGA-BR-8588        TCGA-BR-8589 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8680 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8686        TCGA-BR-8687 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8690        TCGA-BR-A44T        TCGA-BR-A44U        TCGA-BR-A452 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-A453        TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-A4IU        TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-A4J1        TCGA-BR-A4J2        TCGA-BR-A4J4        TCGA-BR-A4J6 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4PE 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-A4PF        TCGA-BR-A4QL        TCGA-BR-A4QM        TCGA-CD-5798 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CD-5799        TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CD-5803        TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CD-8525        TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8528 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CD-8529        TCGA-CD-8530        TCGA-CD-8531        TCGA-CD-8532 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CD-8534        TCGA-CD-8535        TCGA-CD-8536        TCGA-CD-A486 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CD-A487        TCGA-CD-A489        TCGA-CD-A48A        TCGA-CD-A48C 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CD-A4MG        TCGA-CD-A4MH        TCGA-CD-A4MI        TCGA-CD-A4MJ 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CG-4437        TCGA-CG-4441        TCGA-CG-5717        TCGA-CG-5718 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721        TCGA-CG-5722 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5726        TCGA-CG-5727 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CG-5728        TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CG-5734        TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822        TCGA-D7-8570 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-D7-8572        TCGA-D7-8573        TCGA-D7-8574        TCGA-D7-8575 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-D7-8576        TCGA-D7-8578        TCGA-D7-8579        TCGA-D7-A4YT 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-D7-A4YU        TCGA-D7-A4YV        TCGA-D7-A4YX        TCGA-D7-A4YY 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-D7-A4Z0        TCGA-EQ-5647        TCGA-EQ-8122        TCGA-EQ-A4SO 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-F1-6177        TCGA-F1-6875        TCGA-F1-A448        TCGA-FP-7735 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-FP-7829        TCGA-FP-7916        TCGA-FP-7998        TCGA-FP-8099 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-FP-8209        TCGA-FP-8210        TCGA-FP-8211        TCGA-FP-8631 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-FP-A4BE        TCGA-FP-A4BF        TCGA-HF-7132        TCGA-HF-7133 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-HF-7136        TCGA-HJ-7597        TCGA-HU-8243        TCGA-HU-8245 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-HU-8249        TCGA-HU-8602        TCGA-HU-8604        TCGA-HU-8608 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-HU-8610        TCGA-HU-A4G2        TCGA-HU-A4G3        TCGA-HU-A4G6 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-HU-A4G8        TCGA-HU-A4G9        TCGA-HU-A4GC        TCGA-HU-A4GD 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GN        TCGA-HU-A4GP 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-HU-A4GQ        TCGA-HU-A4GT        TCGA-HU-A4GU        TCGA-HU-A4GX 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-HU-A4GY        TCGA-HU-A4H0        TCGA-HU-A4H2        TCGA-HU-A4H3 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4H6        TCGA-HU-A4H8 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-HU-A4HD        TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-IN-8663        TCGA-IP-7968 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL2L14 MUTATED        0      2      0      1      0
  BCL2L14 WILD-TYPE     16     60     51     64     55
D698V3, multiclass
        clus
vv       BCL2L14 MUTATED BCL2L14 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               2                60
  CLUS_3               0                51
  CLUS_4               1                64
  CLUS_5               0                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL2L14 MUTATED        0      1      1      1
  BCL2L14 WILD-TYPE     98     43     49     56
D698V4, multiclass
        clus
vv       BCL2L14 MUTATED BCL2L14 WILD-TYPE
  CLUS_1               0                98
  CLUS_2               1                43
  CLUS_3               1                49
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL2L14 MUTATED        1      0      0      2      0
  BCL2L14 WILD-TYPE     61     59     40     35     59
D698V5, multiclass
        clus
vv       BCL2L14 MUTATED BCL2L14 WILD-TYPE
  CLUS_1               1                61
  CLUS_2               0                59
  CLUS_3               0                40
  CLUS_4               2                35
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  BCL2L14 MUTATED        0      1      2
  BCL2L14 WILD-TYPE    106     53     95
D698V6, multiclass
        clus
vv       BCL2L14 MUTATED BCL2L14 WILD-TYPE
  CLUS_1               0               106
  CLUS_2               1                53
  CLUS_3               2                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  BCL2L14 MUTATED        2      1      0
  BCL2L14 WILD-TYPE    121     94     71
D698V7, multiclass
        clus
vv       BCL2L14 MUTATED BCL2L14 WILD-TYPE
  CLUS_1               2               121
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  BCL2L14 MUTATED        2      1      0
  BCL2L14 WILD-TYPE    155     62     69
D698V8, multiclass
        clus
vv       BCL2L14 MUTATED BCL2L14 WILD-TYPE
  CLUS_1               2               155
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCL2L14 MUTATED        0      1      1      0      0      0
  BCL2L14 WILD-TYPE     33     18     58     39     16     45
D698V9, multiclass
[1] "Remove cluster labels:" "BCL2L14 MUTATED"       
clus
  BCL2L14 MUTATED BCL2L14 WILD-TYPE 
                2               209 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6453 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-7707        TCGA-BR-7715        TCGA-BR-7717        TCGA-BR-7723 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7958 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8077 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8078        TCGA-BR-8080        TCGA-BR-8284        TCGA-BR-8286 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8289        TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8296 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8297        TCGA-BR-8360        TCGA-BR-8361        TCGA-BR-8363 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8364        TCGA-BR-8365        TCGA-BR-8368        TCGA-BR-8369 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8370        TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8373 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8380        TCGA-BR-8381        TCGA-BR-8382        TCGA-BR-8384 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8483        TCGA-BR-8485        TCGA-BR-8486        TCGA-BR-8487 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8588        TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8676        TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8680        TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8687 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8690        TCGA-BR-A44T        TCGA-BR-A452        TCGA-BR-A453 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-A4J6        TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-A4QL        TCGA-BR-A4QM        TCGA-CD-5798        TCGA-CD-5799 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8525 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8529        TCGA-CD-8530 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CD-8531        TCGA-CD-8532        TCGA-CD-8534        TCGA-CD-8535 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487        TCGA-CD-A489 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CD-A48C        TCGA-CD-A4MG        TCGA-CD-A4MH        TCGA-CD-A4MI 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CG-4437        TCGA-CG-4441        TCGA-CG-4449        TCGA-CG-5717 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5726 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CG-5727        TCGA-CG-5728        TCGA-CG-5730        TCGA-CG-5732 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CG-5733        TCGA-CG-5734        TCGA-D7-5577        TCGA-D7-5578 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-D7-5579        TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-D7-6521        TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-D7-6526        TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-D7-8570        TCGA-D7-8572        TCGA-D7-8574        TCGA-D7-8575 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-D7-8576        TCGA-D7-8578        TCGA-D7-8579        TCGA-D7-A4YT 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-D7-A4YU        TCGA-D7-A4YV        TCGA-D7-A4YY        TCGA-D7-A4Z0 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-EQ-5647        TCGA-EQ-8122        TCGA-F1-6177        TCGA-F1-6875 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-F1-A448        TCGA-FP-7735        TCGA-FP-7829        TCGA-FP-7998 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-FP-8099        TCGA-FP-8209        TCGA-FP-8210        TCGA-FP-8211 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-FP-8631        TCGA-FP-A4BE        TCGA-HF-7132        TCGA-HF-7136 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-HU-8243        TCGA-HU-8602        TCGA-HU-8604        TCGA-HU-8608 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-HU-A4G3        TCGA-HU-A4G8        TCGA-HU-A4GC        TCGA-HU-A4GD 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GN        TCGA-HU-A4GQ 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-HU-A4GT        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H2 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4H6        TCGA-HU-A4H8 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-IP-7968 
"BCL2L14 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCL2L14 MUTATED        1      0      0      0      1      0
  BCL2L14 WILD-TYPE     46     39     35     32     22     35
D698V10, multiclass
[1] "Remove cluster labels:" "BCL2L14 MUTATED"       
clus
  BCL2L14 MUTATED BCL2L14 WILD-TYPE 
                2               209 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6453 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-7707        TCGA-BR-7715        TCGA-BR-7717        TCGA-BR-7723 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7958 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8077 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8078        TCGA-BR-8080        TCGA-BR-8284        TCGA-BR-8286 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8289        TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8296 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8297        TCGA-BR-8360        TCGA-BR-8361        TCGA-BR-8363 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8364        TCGA-BR-8365        TCGA-BR-8368        TCGA-BR-8369 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8370        TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8373 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8380        TCGA-BR-8381        TCGA-BR-8382        TCGA-BR-8384 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8483        TCGA-BR-8485        TCGA-BR-8486        TCGA-BR-8487 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8588        TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8676        TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8680        TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8687 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-8690        TCGA-BR-A44T        TCGA-BR-A452        TCGA-BR-A453 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-A4J6        TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-BR-A4QL        TCGA-BR-A4QM        TCGA-CD-5798        TCGA-CD-5799 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8525 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8529        TCGA-CD-8530 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CD-8531        TCGA-CD-8532        TCGA-CD-8534        TCGA-CD-8535 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487        TCGA-CD-A489 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CD-A48C        TCGA-CD-A4MG        TCGA-CD-A4MH        TCGA-CD-A4MI 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CG-4437        TCGA-CG-4441        TCGA-CG-4449        TCGA-CG-5717 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5726 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CG-5727        TCGA-CG-5728        TCGA-CG-5730        TCGA-CG-5732 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-CG-5733        TCGA-CG-5734        TCGA-D7-5577        TCGA-D7-5578 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-D7-5579        TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-D7-6521        TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-D7-6526        TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-D7-8570        TCGA-D7-8572        TCGA-D7-8574        TCGA-D7-8575 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-D7-8576        TCGA-D7-8578        TCGA-D7-8579        TCGA-D7-A4YT 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-D7-A4YU        TCGA-D7-A4YV        TCGA-D7-A4YY        TCGA-D7-A4Z0 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-EQ-5647        TCGA-EQ-8122        TCGA-F1-6177        TCGA-F1-6875 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-F1-A448        TCGA-FP-7735        TCGA-FP-7829        TCGA-FP-7998 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-FP-8099        TCGA-FP-8209        TCGA-FP-8210        TCGA-FP-8211 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-FP-8631        TCGA-FP-A4BE        TCGA-HF-7132        TCGA-HF-7136 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-HU-8243        TCGA-HU-8602        TCGA-HU-8604        TCGA-HU-8608 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-HU-A4G3        TCGA-HU-A4G8        TCGA-HU-A4GC        TCGA-HU-A4GD 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GN        TCGA-HU-A4GQ 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-HU-A4GT        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H2 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4H6        TCGA-HU-A4H8 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" "BCL2L14 WILD-TYPE" 
       TCGA-IP-7968 
"BCL2L14 WILD-TYPE" 

Clustering(699) Variable = HDAC4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HDAC4 MUTATED        0     17      2      1      2
  HDAC4 WILD-TYPE     79    109     25     42     10
D699V1, multiclass
        clus
vv       HDAC4 MUTATED HDAC4 WILD-TYPE
  CLUS_1             0              79
  CLUS_2            17             109
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDAC4 MUTATED        1     16      2      1
  HDAC4 WILD-TYPE     70     60     32     62
D699V2, multiclass
        clus
vv       HDAC4 MUTATED HDAC4 WILD-TYPE
  CLUS_1             1              70
  CLUS_2            16              60
  CLUS_3             2              32
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HDAC4 MUTATED        0      8      6      0      6
  HDAC4 WILD-TYPE     16     54     45     65     49
D699V3, multiclass
        clus
vv       HDAC4 MUTATED HDAC4 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             8              54
  CLUS_3             6              45
  CLUS_4             0              65
  CLUS_5             6              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDAC4 MUTATED        3     13      4      0
  HDAC4 WILD-TYPE     95     31     46     57
D699V4, multiclass
        clus
vv       HDAC4 MUTATED HDAC4 WILD-TYPE
  CLUS_1             3              95
  CLUS_2            13              31
  CLUS_3             4              46
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HDAC4 MUTATED       10      0      3      5      0
  HDAC4 WILD-TYPE     52     59     37     32     59
D699V5, multiclass
        clus
vv       HDAC4 MUTATED HDAC4 WILD-TYPE
  CLUS_1            10              52
  CLUS_2             0              59
  CLUS_3             3              37
  CLUS_4             5              32
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDAC4 MUTATED        1      0     17
  HDAC4 WILD-TYPE    105     54     80
D699V6, multiclass
        clus
vv       HDAC4 MUTATED HDAC4 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3            17              80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDAC4 MUTATED       18      2      2
  HDAC4 WILD-TYPE    105     93     69
D699V7, multiclass
        clus
vv       HDAC4 MUTATED HDAC4 WILD-TYPE
  CLUS_1            18             105
  CLUS_2             2              93
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDAC4 MUTATED       21      1      0
  HDAC4 WILD-TYPE    136     62     69
D699V8, multiclass
        clus
vv       HDAC4 MUTATED HDAC4 WILD-TYPE
  CLUS_1            21             136
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HDAC4 MUTATED        3      2      5      6      0      1
  HDAC4 WILD-TYPE     30     17     54     33     16     44
D699V9, multiclass
        clus
vv       HDAC4 MUTATED HDAC4 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             2              17
  CLUS_3             5              54
  CLUS_4             6              33
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HDAC4 MUTATED       10      1      2      2      2      0
  HDAC4 WILD-TYPE     37     38     33     30     21     35
D699V10, multiclass
        clus
vv       HDAC4 MUTATED HDAC4 WILD-TYPE
  CLUS_1            10              37
  CLUS_2             1              38
  CLUS_3             2              33
  CLUS_4             2              30
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(700) Variable = CNTROB MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNTROB MUTATED        0      6      0      1      0
  CNTROB WILD-TYPE     79    120     27     42     12
D700V1, multiclass
        clus
vv       CNTROB MUTATED CNTROB WILD-TYPE
  CLUS_1              0               79
  CLUS_2              6              120
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTROB MUTATED        0      5      1      0
  CNTROB WILD-TYPE     71     71     33     63
D700V2, multiclass
        clus
vv       CNTROB MUTATED CNTROB WILD-TYPE
  CLUS_1              0               71
  CLUS_2              5               71
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNTROB MUTATED        0      4      2      0      0
  CNTROB WILD-TYPE     16     58     49     65     55
D700V3, multiclass
        clus
vv       CNTROB MUTATED CNTROB WILD-TYPE
  CLUS_1              0               16
  CLUS_2              4               58
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              0               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTROB MUTATED        1      4      1      0
  CNTROB WILD-TYPE     97     40     49     57
D700V4, multiclass
        clus
vv       CNTROB MUTATED CNTROB WILD-TYPE
  CLUS_1              1               97
  CLUS_2              4               40
  CLUS_3              1               49
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNTROB MUTATED        4      0      0      3      0
  CNTROB WILD-TYPE     58     59     40     34     59
D700V5, multiclass
        clus
vv       CNTROB MUTATED CNTROB WILD-TYPE
  CLUS_1              4               58
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              3               34
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CNTROB MUTATED        2      0      5
  CNTROB WILD-TYPE    104     54     92
D700V6, multiclass
        clus
vv       CNTROB MUTATED CNTROB WILD-TYPE
  CLUS_1              2              104
  CLUS_2              0               54
  CLUS_3              5               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CNTROB MUTATED        7      0      0
  CNTROB WILD-TYPE    116     95     71
D700V7, multiclass
        clus
vv       CNTROB MUTATED CNTROB WILD-TYPE
  CLUS_1              7              116
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CNTROB MUTATED        7      0      0
  CNTROB WILD-TYPE    150     63     69
D700V8, multiclass
        clus
vv       CNTROB MUTATED CNTROB WILD-TYPE
  CLUS_1              7              150
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNTROB MUTATED        1      1      2      1      1      0
  CNTROB WILD-TYPE     32     18     57     38     15     45
D700V9, multiclass
        clus
vv       CNTROB MUTATED CNTROB WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              1               38
  CLUS_5              1               15
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNTROB MUTATED        3      0      2      1      0      0
  CNTROB WILD-TYPE     44     39     33     31     23     35
D700V10, multiclass
        clus
vv       CNTROB MUTATED CNTROB WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(701) Variable = SP100 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SP100 MUTATED        1      7      2      3      1
  SP100 WILD-TYPE     78    119     25     40     11
D701V1, multiclass
        clus
vv       SP100 MUTATED SP100 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             7             119
  CLUS_3             2              25
  CLUS_4             3              40
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP100 MUTATED        2      7      3      2
  SP100 WILD-TYPE     69     69     31     61
D701V2, multiclass
        clus
vv       SP100 MUTATED SP100 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             7              69
  CLUS_3             3              31
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SP100 MUTATED        1      5      3      1      3
  SP100 WILD-TYPE     15     57     48     64     52
D701V3, multiclass
        clus
vv       SP100 MUTATED SP100 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             5              57
  CLUS_3             3              48
  CLUS_4             1              64
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP100 MUTATED        2      5      5      1
  SP100 WILD-TYPE     96     39     45     56
D701V4, multiclass
        clus
vv       SP100 MUTATED SP100 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             5              39
  CLUS_3             5              45
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SP100 MUTATED        5      3      2      3      1
  SP100 WILD-TYPE     57     56     38     34     58
D701V5, multiclass
        clus
vv       SP100 MUTATED SP100 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             3              56
  CLUS_3             2              38
  CLUS_4             3              34
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SP100 MUTATED        6      1      7
  SP100 WILD-TYPE    100     53     90
D701V6, multiclass
        clus
vv       SP100 MUTATED SP100 WILD-TYPE
  CLUS_1             6             100
  CLUS_2             1              53
  CLUS_3             7              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SP100 MUTATED       11      3      1
  SP100 WILD-TYPE    112     92     70
D701V7, multiclass
        clus
vv       SP100 MUTATED SP100 WILD-TYPE
  CLUS_1            11             112
  CLUS_2             3              92
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SP100 MUTATED       11      2      2
  SP100 WILD-TYPE    146     61     67
D701V8, multiclass
        clus
vv       SP100 MUTATED SP100 WILD-TYPE
  CLUS_1            11             146
  CLUS_2             2              61
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SP100 MUTATED        1      3      5      1      0      2
  SP100 WILD-TYPE     32     16     54     38     16     43
D701V9, multiclass
        clus
vv       SP100 MUTATED SP100 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             3              16
  CLUS_3             5              54
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             2              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SP100 MUTATED        3      0      5      1      2      1
  SP100 WILD-TYPE     44     39     30     31     21     34
D701V10, multiclass
        clus
vv       SP100 MUTATED SP100 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             5              30
  CLUS_4             1              31
  CLUS_5             2              21
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(702) Variable = ZNF334 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF334 MUTATED        1      9      0      2      0
  ZNF334 WILD-TYPE     78    117     27     41     12
D702V1, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              9              117
  CLUS_3              0               27
  CLUS_4              2               41
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF334 MUTATED        1      5      2      1
  ZNF334 WILD-TYPE     70     71     32     62
D702V2, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              5               71
  CLUS_3              2               32
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF334 MUTATED        0      6      2      1      2
  ZNF334 WILD-TYPE     16     56     49     64     53
D702V3, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              6               56
  CLUS_3              2               49
  CLUS_4              1               64
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF334 MUTATED        0      7      3      1
  ZNF334 WILD-TYPE     98     37     47     56
D702V4, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              7               37
  CLUS_3              3               47
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF334 MUTATED        7      1      0      2      1
  ZNF334 WILD-TYPE     55     58     40     35     58
D702V5, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              7               55
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              2               35
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF334 MUTATED        2      0      9
  ZNF334 WILD-TYPE    104     54     88
D702V6, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              2              104
  CLUS_2              0               54
  CLUS_3              9               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF334 MUTATED       10      0      2
  ZNF334 WILD-TYPE    113     95     69
D702V7, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1             10              113
  CLUS_2              0               95
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF334 MUTATED       10      1      1
  ZNF334 WILD-TYPE    147     62     68
D702V8, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1             10              147
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF334 MUTATED        3      0      3      1      0      0
  ZNF334 WILD-TYPE     30     19     56     38     16     45
D702V9, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              0               19
  CLUS_3              3               56
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF334 MUTATED        3      0      3      1      0      0
  ZNF334 WILD-TYPE     44     39     32     31     23     35
D702V10, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(703) Variable = GABRD MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GABRD MUTATED        0      6      0      0      0
  GABRD WILD-TYPE     79    120     27     43     12
D703V1, multiclass
        clus
vv       GABRD MUTATED GABRD WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRD MUTATED        1      4      0      1
  GABRD WILD-TYPE     70     72     34     62
D703V2, multiclass
        clus
vv       GABRD MUTATED GABRD WILD-TYPE
  CLUS_1             1              70
  CLUS_2             4              72
  CLUS_3             0              34
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GABRD MUTATED        0      1      1      0      1
  GABRD WILD-TYPE     16     61     50     65     54
D703V3, multiclass
        clus
vv       GABRD MUTATED GABRD WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              61
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRD MUTATED        1      1      1      0
  GABRD WILD-TYPE     97     43     49     57
D703V4, multiclass
        clus
vv       GABRD MUTATED GABRD WILD-TYPE
  CLUS_1             1              97
  CLUS_2             1              43
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GABRD MUTATED        2      0      1      2      0
  GABRD WILD-TYPE     60     59     39     35     59
D703V5, multiclass
        clus
vv       GABRD MUTATED GABRD WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GABRD MUTATED        0      1      4
  GABRD WILD-TYPE    106     53     93
D703V6, multiclass
        clus
vv       GABRD MUTATED GABRD WILD-TYPE
  CLUS_1             0             106
  CLUS_2             1              53
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GABRD MUTATED        5      1      0
  GABRD WILD-TYPE    118     94     71
D703V7, multiclass
        clus
vv       GABRD MUTATED GABRD WILD-TYPE
  CLUS_1             5             118
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GABRD MUTATED        6      0      0
  GABRD WILD-TYPE    151     63     69
D703V8, multiclass
        clus
vv       GABRD MUTATED GABRD WILD-TYPE
  CLUS_1             6             151
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GABRD MUTATED        0      3      0      2      0      0
  GABRD WILD-TYPE     33     16     59     37     16     45
D703V9, multiclass
        clus
vv       GABRD MUTATED GABRD WILD-TYPE
  CLUS_1             0              33
  CLUS_2             3              16
  CLUS_3             0              59
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GABRD MUTATED        4      0      0      0      1      0
  GABRD WILD-TYPE     43     39     35     32     22     35
D703V10, multiclass
        clus
vv       GABRD MUTATED GABRD WILD-TYPE
  CLUS_1             4              43
  CLUS_2             0              39
  CLUS_3             0              35
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(704) Variable = LENG1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LENG1 MUTATED        0      6      1      1      0
  LENG1 WILD-TYPE     79    120     26     42     12
D704V1, multiclass
        clus
vv       LENG1 MUTATED LENG1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LENG1 MUTATED        0      5      2      0
  LENG1 WILD-TYPE     71     71     32     63
D704V2, multiclass
        clus
vv       LENG1 MUTATED LENG1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             5              71
  CLUS_3             2              32
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LENG1 MUTATED        0      4      3      1      0
  LENG1 WILD-TYPE     16     58     48     64     55
D704V3, multiclass
        clus
vv       LENG1 MUTATED LENG1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             4              58
  CLUS_3             3              48
  CLUS_4             1              64
  CLUS_5             0              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LENG1 MUTATED        0      4      3      1
  LENG1 WILD-TYPE     98     40     47     56
D704V4, multiclass
        clus
vv       LENG1 MUTATED LENG1 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             4              40
  CLUS_3             3              47
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LENG1 MUTATED        2      1      0      4      0
  LENG1 WILD-TYPE     60     58     40     33     59
D704V5, multiclass
        clus
vv       LENG1 MUTATED LENG1 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             4              33
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LENG1 MUTATED        0      1      6
  LENG1 WILD-TYPE    106     53     91
D704V6, multiclass
        clus
vv       LENG1 MUTATED LENG1 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             1              53
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LENG1 MUTATED        5      3      0
  LENG1 WILD-TYPE    118     92     71
D704V7, multiclass
        clus
vv       LENG1 MUTATED LENG1 WILD-TYPE
  CLUS_1             5             118
  CLUS_2             3              92
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LENG1 MUTATED        6      2      0
  LENG1 WILD-TYPE    151     61     69
D704V8, multiclass
        clus
vv       LENG1 MUTATED LENG1 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             2              61
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LENG1 MUTATED        1      1      2      1      0      1
  LENG1 WILD-TYPE     32     18     57     38     16     44
D704V9, multiclass
        clus
vv       LENG1 MUTATED LENG1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             2              57
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LENG1 MUTATED        3      1      1      0      1      0
  LENG1 WILD-TYPE     44     38     34     32     22     35
D704V10, multiclass
        clus
vv       LENG1 MUTATED LENG1 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             1              38
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(705) Variable = TBC1D23 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D23 MUTATED        0      2      1      0      1
  TBC1D23 WILD-TYPE     79    124     26     43     11
D705V1, multiclass
        clus
vv       TBC1D23 MUTATED TBC1D23 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               2               124
  CLUS_3               1                26
  CLUS_4               0                43
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D23 MUTATED        1      1      1      0
  TBC1D23 WILD-TYPE     70     75     33     63
D705V2, multiclass
        clus
vv       TBC1D23 MUTATED TBC1D23 WILD-TYPE
  CLUS_1               1                70
  CLUS_2               1                75
  CLUS_3               1                33
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D23 MUTATED        0      2      2      0      0
  TBC1D23 WILD-TYPE     16     60     49     65     55
D705V3, multiclass
        clus
vv       TBC1D23 MUTATED TBC1D23 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               2                60
  CLUS_3               2                49
  CLUS_4               0                65
  CLUS_5               0                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D23 MUTATED        1      3      0      0
  TBC1D23 WILD-TYPE     97     41     50     57
D705V4, multiclass
        clus
vv       TBC1D23 MUTATED TBC1D23 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               3                41
  CLUS_3               0                50
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D23 MUTATED        1      0      1      1      0
  TBC1D23 WILD-TYPE     61     59     39     36     59
D705V5, multiclass
        clus
vv       TBC1D23 MUTATED TBC1D23 WILD-TYPE
  CLUS_1               1                61
  CLUS_2               0                59
  CLUS_3               1                39
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TBC1D23 MUTATED        0      0      3
  TBC1D23 WILD-TYPE    106     54     94
D705V6, multiclass
        clus
vv       TBC1D23 MUTATED TBC1D23 WILD-TYPE
  CLUS_1               0               106
  CLUS_2               0                54
  CLUS_3               3                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TBC1D23 MUTATED        3      1      0
  TBC1D23 WILD-TYPE    120     94     71
D705V7, multiclass
        clus
vv       TBC1D23 MUTATED TBC1D23 WILD-TYPE
  CLUS_1               3               120
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TBC1D23 MUTATED        3      1      0
  TBC1D23 WILD-TYPE    154     62     69
D705V8, multiclass
        clus
vv       TBC1D23 MUTATED TBC1D23 WILD-TYPE
  CLUS_1               3               154
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TBC1D23 MUTATED        1      1      0      0      0      1
  TBC1D23 WILD-TYPE     32     18     59     39     16     44
D705V9, multiclass
        clus
vv       TBC1D23 MUTATED TBC1D23 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                18
  CLUS_3               0                59
  CLUS_4               0                39
  CLUS_5               0                16
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TBC1D23 MUTATED        2      1      0      0      0      0
  TBC1D23 WILD-TYPE     45     38     35     32     23     35
D705V10, multiclass
        clus
vv       TBC1D23 MUTATED TBC1D23 WILD-TYPE
  CLUS_1               2                45
  CLUS_2               1                38
  CLUS_3               0                35
  CLUS_4               0                32
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(706) Variable = EPHA10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA10 MUTATED        1     12      0      0      0
  EPHA10 WILD-TYPE     78    114     27     43     12
D706V1, multiclass
        clus
vv       EPHA10 MUTATED EPHA10 WILD-TYPE
  CLUS_1              1               78
  CLUS_2             12              114
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA10 MUTATED        1      7      2      0
  EPHA10 WILD-TYPE     70     69     32     63
D706V2, multiclass
        clus
vv       EPHA10 MUTATED EPHA10 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              7               69
  CLUS_3              2               32
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA10 MUTATED        1      6      0      0      4
  EPHA10 WILD-TYPE     15     56     51     65     51
D706V3, multiclass
        clus
vv       EPHA10 MUTATED EPHA10 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              6               56
  CLUS_3              0               51
  CLUS_4              0               65
  CLUS_5              4               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA10 MUTATED        2      4      5      0
  EPHA10 WILD-TYPE     96     40     45     57
D706V4, multiclass
        clus
vv       EPHA10 MUTATED EPHA10 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              4               40
  CLUS_3              5               45
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA10 MUTATED        6      1      2      2      1
  EPHA10 WILD-TYPE     56     58     38     35     58
D706V5, multiclass
        clus
vv       EPHA10 MUTATED EPHA10 WILD-TYPE
  CLUS_1              6               56
  CLUS_2              1               58
  CLUS_3              2               38
  CLUS_4              2               35
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EPHA10 MUTATED        3      0      9
  EPHA10 WILD-TYPE    103     54     88
D706V6, multiclass
        clus
vv       EPHA10 MUTATED EPHA10 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              0               54
  CLUS_3              9               88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EPHA10 MUTATED       10      1      2
  EPHA10 WILD-TYPE    113     94     69
D706V7, multiclass
        clus
vv       EPHA10 MUTATED EPHA10 WILD-TYPE
  CLUS_1             10              113
  CLUS_2              1               94
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EPHA10 MUTATED       13      0      0
  EPHA10 WILD-TYPE    144     63     69
D706V8, multiclass
        clus
vv       EPHA10 MUTATED EPHA10 WILD-TYPE
  CLUS_1             13              144
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPHA10 MUTATED        1      1      4      4      0      0
  EPHA10 WILD-TYPE     32     18     55     35     16     45
D706V9, multiclass
        clus
vv       EPHA10 MUTATED EPHA10 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              4               55
  CLUS_4              4               35
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPHA10 MUTATED        4      0      3      1      2      0
  EPHA10 WILD-TYPE     43     39     32     31     21     35
D706V10, multiclass
        clus
vv       EPHA10 MUTATED EPHA10 WILD-TYPE
  CLUS_1              4               43
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              1               31
  CLUS_5              2               21
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(707) Variable = EHBP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EHBP1 MUTATED        0      6      2      1      0
  EHBP1 WILD-TYPE     79    120     25     42     12
D707V1, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             6             120
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHBP1 MUTATED        2      2      1      2
  EHBP1 WILD-TYPE     69     74     33     61
D707V2, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             2              74
  CLUS_3             1              33
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EHBP1 MUTATED        1      3      0      2      1
  EHBP1 WILD-TYPE     15     59     51     63     54
D707V3, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3              59
  CLUS_3             0              51
  CLUS_4             2              63
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHBP1 MUTATED        1      1      4      1
  EHBP1 WILD-TYPE     97     43     46     56
D707V4, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             1              43
  CLUS_3             4              46
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EHBP1 MUTATED        6      1      0      1      1
  EHBP1 WILD-TYPE     56     58     40     36     58
D707V5, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EHBP1 MUTATED        4      2      3
  EHBP1 WILD-TYPE    102     52     94
D707V6, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             2              52
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EHBP1 MUTATED        6      3      0
  EHBP1 WILD-TYPE    117     92     71
D707V7, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             3              92
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EHBP1 MUTATED        5      3      1
  EHBP1 WILD-TYPE    152     60     68
D707V8, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             5             152
  CLUS_2             3              60
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EHBP1 MUTATED        0      0      2      2      0      3
  EHBP1 WILD-TYPE     33     19     57     37     16     42
D707V9, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              19
  CLUS_3             2              57
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             3              42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EHBP1 MUTATED        0      1      2      1      3      0
  EHBP1 WILD-TYPE     47     38     33     31     20     35
D707V10, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             1              38
  CLUS_3             2              33
  CLUS_4             1              31
  CLUS_5             3              20
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(708) Variable = NUAK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUAK1 MUTATED        2     10      2      2      0
  NUAK1 WILD-TYPE     77    116     25     41     12
D708V1, multiclass
        clus
vv       NUAK1 MUTATED NUAK1 WILD-TYPE
  CLUS_1             2              77
  CLUS_2            10             116
  CLUS_3             2              25
  CLUS_4             2              41
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUAK1 MUTATED        1      8      3      1
  NUAK1 WILD-TYPE     70     68     31     62
D708V2, multiclass
        clus
vv       NUAK1 MUTATED NUAK1 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             8              68
  CLUS_3             3              31
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUAK1 MUTATED        1      6      0      1      6
  NUAK1 WILD-TYPE     15     56     51     64     49
D708V3, multiclass
        clus
vv       NUAK1 MUTATED NUAK1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             6              56
  CLUS_3             0              51
  CLUS_4             1              64
  CLUS_5             6              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUAK1 MUTATED        1      7      4      2
  NUAK1 WILD-TYPE     97     37     46     55
D708V4, multiclass
        clus
vv       NUAK1 MUTATED NUAK1 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             7              37
  CLUS_3             4              46
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUAK1 MUTATED        8      2      2      2      1
  NUAK1 WILD-TYPE     54     57     38     35     58
D708V5, multiclass
        clus
vv       NUAK1 MUTATED NUAK1 WILD-TYPE
  CLUS_1             8              54
  CLUS_2             2              57
  CLUS_3             2              38
  CLUS_4             2              35
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUAK1 MUTATED        5      1      9
  NUAK1 WILD-TYPE    101     53     88
D708V6, multiclass
        clus
vv       NUAK1 MUTATED NUAK1 WILD-TYPE
  CLUS_1             5             101
  CLUS_2             1              53
  CLUS_3             9              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUAK1 MUTATED       10      3      3
  NUAK1 WILD-TYPE    113     92     68
D708V7, multiclass
        clus
vv       NUAK1 MUTATED NUAK1 WILD-TYPE
  CLUS_1            10             113
  CLUS_2             3              92
  CLUS_3             3              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUAK1 MUTATED       12      3      1
  NUAK1 WILD-TYPE    145     60     68
D708V8, multiclass
        clus
vv       NUAK1 MUTATED NUAK1 WILD-TYPE
  CLUS_1            12             145
  CLUS_2             3              60
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NUAK1 MUTATED        2      1      3      3      0      2
  NUAK1 WILD-TYPE     31     18     56     36     16     43
D708V9, multiclass
        clus
vv       NUAK1 MUTATED NUAK1 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              18
  CLUS_3             3              56
  CLUS_4             3              36
  CLUS_5             0              16
  CLUS_6             2              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NUAK1 MUTATED        4      0      3      1      2      1
  NUAK1 WILD-TYPE     43     39     32     31     21     34
D708V10, multiclass
        clus
vv       NUAK1 MUTATED NUAK1 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             0              39
  CLUS_3             3              32
  CLUS_4             1              31
  CLUS_5             2              21
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(709) Variable = IGHMBP2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGHMBP2 MUTATED        0      9      1      2      0
  IGHMBP2 WILD-TYPE     79    117     26     41     12
D709V1, multiclass
        clus
vv       IGHMBP2 MUTATED IGHMBP2 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               9               117
  CLUS_3               1                26
  CLUS_4               2                41
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGHMBP2 MUTATED        0      7      1      3
  IGHMBP2 WILD-TYPE     71     69     33     60
D709V2, multiclass
        clus
vv       IGHMBP2 MUTATED IGHMBP2 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               7                69
  CLUS_3               1                33
  CLUS_4               3                60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGHMBP2 MUTATED        1      1      4      1      3
  IGHMBP2 WILD-TYPE     15     61     47     64     52
D709V3, multiclass
        clus
vv       IGHMBP2 MUTATED IGHMBP2 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               1                61
  CLUS_3               4                47
  CLUS_4               1                64
  CLUS_5               3                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGHMBP2 MUTATED        1      6      2      1
  IGHMBP2 WILD-TYPE     97     38     48     56
D709V4, multiclass
        clus
vv       IGHMBP2 MUTATED IGHMBP2 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               6                38
  CLUS_3               2                48
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGHMBP2 MUTATED        5      1      0      3      1
  IGHMBP2 WILD-TYPE     57     58     40     34     58
D709V5, multiclass
        clus
vv       IGHMBP2 MUTATED IGHMBP2 WILD-TYPE
  CLUS_1               5                57
  CLUS_2               1                58
  CLUS_3               0                40
  CLUS_4               3                34
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  IGHMBP2 MUTATED        2      1      7
  IGHMBP2 WILD-TYPE    104     53     90
D709V6, multiclass
        clus
vv       IGHMBP2 MUTATED IGHMBP2 WILD-TYPE
  CLUS_1               2               104
  CLUS_2               1                53
  CLUS_3               7                90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  IGHMBP2 MUTATED       10      2      0
  IGHMBP2 WILD-TYPE    113     93     71
D709V7, multiclass
        clus
vv       IGHMBP2 MUTATED IGHMBP2 WILD-TYPE
  CLUS_1              10               113
  CLUS_2               2                93
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  IGHMBP2 MUTATED       10      2      0
  IGHMBP2 WILD-TYPE    147     61     69
D709V8, multiclass
        clus
vv       IGHMBP2 MUTATED IGHMBP2 WILD-TYPE
  CLUS_1              10               147
  CLUS_2               2                61
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IGHMBP2 MUTATED        1      2      5      0      0      2
  IGHMBP2 WILD-TYPE     32     17     54     39     16     43
D709V9, multiclass
        clus
vv       IGHMBP2 MUTATED IGHMBP2 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               2                17
  CLUS_3               5                54
  CLUS_4               0                39
  CLUS_5               0                16
  CLUS_6               2                43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IGHMBP2 MUTATED        3      2      3      2      0      0
  IGHMBP2 WILD-TYPE     44     37     32     30     23     35
D709V10, multiclass
        clus
vv       IGHMBP2 MUTATED IGHMBP2 WILD-TYPE
  CLUS_1               3                44
  CLUS_2               2                37
  CLUS_3               3                32
  CLUS_4               2                30
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(710) Variable = PIK3C2G MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3C2G MUTATED        0      7      2      1      0
  PIK3C2G WILD-TYPE     79    119     25     42     12
D710V1, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               0                79
  CLUS_2               7               119
  CLUS_3               2                25
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3C2G MUTATED        0      5      2      1
  PIK3C2G WILD-TYPE     71     71     32     62
D710V2, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               0                71
  CLUS_2               5                71
  CLUS_3               2                32
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3C2G MUTATED        1      3      1      2      2
  PIK3C2G WILD-TYPE     15     59     50     63     53
D710V3, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               1                15
  CLUS_2               3                59
  CLUS_3               1                50
  CLUS_4               2                63
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3C2G MUTATED        2      3      2      2
  PIK3C2G WILD-TYPE     96     41     48     55
D710V4, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               2                96
  CLUS_2               3                41
  CLUS_3               2                48
  CLUS_4               2                55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3C2G MUTATED        5      1      1      2      0
  PIK3C2G WILD-TYPE     57     58     39     35     59
D710V5, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               5                57
  CLUS_2               1                58
  CLUS_3               1                39
  CLUS_4               2                35
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PIK3C2G MUTATED        3      2      4
  PIK3C2G WILD-TYPE    103     52     93
D710V6, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               3               103
  CLUS_2               2                52
  CLUS_3               4                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PIK3C2G MUTATED        8      2      0
  PIK3C2G WILD-TYPE    115     93     71
D710V7, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               8               115
  CLUS_2               2                93
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PIK3C2G MUTATED        9      1      0
  PIK3C2G WILD-TYPE    148     62     69
D710V8, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               9               148
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIK3C2G MUTATED        1      1      3      3      0      0
  PIK3C2G WILD-TYPE     32     18     56     36     16     45
D710V9, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               1                32
  CLUS_2               1                18
  CLUS_3               3                56
  CLUS_4               3                36
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIK3C2G MUTATED        1      0      3      2      2      0
  PIK3C2G WILD-TYPE     46     39     32     30     21     35
D710V10, multiclass
        clus
vv       PIK3C2G MUTATED PIK3C2G WILD-TYPE
  CLUS_1               1                46
  CLUS_2               0                39
  CLUS_3               3                32
  CLUS_4               2                30
  CLUS_5               2                21
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(711) Variable = SLC2A12 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC2A12 MUTATED        1      6      0      0      0
  SLC2A12 WILD-TYPE     78    120     27     43     12
D711V1, multiclass
        clus
vv       SLC2A12 MUTATED SLC2A12 WILD-TYPE
  CLUS_1               1                78
  CLUS_2               6               120
  CLUS_3               0                27
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC2A12 MUTATED        0      5      0      1
  SLC2A12 WILD-TYPE     71     71     34     62
D711V2, multiclass
        clus
vv       SLC2A12 MUTATED SLC2A12 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               5                71
  CLUS_3               0                34
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC2A12 MUTATED        0      2      2      0      1
  SLC2A12 WILD-TYPE     16     60     49     65     54
D711V3, multiclass
        clus
vv       SLC2A12 MUTATED SLC2A12 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               2                60
  CLUS_3               2                49
  CLUS_4               0                65
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC2A12 MUTATED        2      2      1      0
  SLC2A12 WILD-TYPE     96     42     49     57
D711V4, multiclass
        clus
vv       SLC2A12 MUTATED SLC2A12 WILD-TYPE
  CLUS_1               2                96
  CLUS_2               2                42
  CLUS_3               1                49
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC2A12 MUTATED        2      0      0      2      0
  SLC2A12 WILD-TYPE     60     59     40     35     59
D711V5, multiclass
        clus
vv       SLC2A12 MUTATED SLC2A12 WILD-TYPE
  CLUS_1               2                60
  CLUS_2               0                59
  CLUS_3               0                40
  CLUS_4               2                35
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC2A12 MUTATED        0      0      4
  SLC2A12 WILD-TYPE    106     54     93
D711V6, multiclass
        clus
vv       SLC2A12 MUTATED SLC2A12 WILD-TYPE
  CLUS_1               0               106
  CLUS_2               0                54
  CLUS_3               4                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC2A12 MUTATED        7      0      0
  SLC2A12 WILD-TYPE    116     95     71
D711V7, multiclass
        clus
vv       SLC2A12 MUTATED SLC2A12 WILD-TYPE
  CLUS_1               7               116
  CLUS_2               0                95
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC2A12 MUTATED        7      0      0
  SLC2A12 WILD-TYPE    150     63     69
D711V8, multiclass
        clus
vv       SLC2A12 MUTATED SLC2A12 WILD-TYPE
  CLUS_1               7               150
  CLUS_2               0                63
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC2A12 MUTATED        1      0      2      2      0      0
  SLC2A12 WILD-TYPE     32     19     57     37     16     45
D711V9, multiclass
        clus
vv       SLC2A12 MUTATED SLC2A12 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               0                19
  CLUS_3               2                57
  CLUS_4               2                37
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC2A12 MUTATED        2      0      1      2      0      0
  SLC2A12 WILD-TYPE     45     39     34     30     23     35
D711V10, multiclass
        clus
vv       SLC2A12 MUTATED SLC2A12 WILD-TYPE
  CLUS_1               2                45
  CLUS_2               0                39
  CLUS_3               1                34
  CLUS_4               2                30
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(712) Variable = ARID3A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID3A MUTATED        0      4      0      1      1
  ARID3A WILD-TYPE     79    122     27     42     11
D712V1, multiclass
        clus
vv       ARID3A MUTATED ARID3A WILD-TYPE
  CLUS_1              0               79
  CLUS_2              4              122
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID3A MUTATED        0      5      0      1
  ARID3A WILD-TYPE     71     71     34     62
D712V2, multiclass
        clus
vv       ARID3A MUTATED ARID3A WILD-TYPE
  CLUS_1              0               71
  CLUS_2              5               71
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID3A MUTATED        1      1      1      1      0
  ARID3A WILD-TYPE     15     61     50     64     55
D712V3, multiclass
        clus
vv       ARID3A MUTATED ARID3A WILD-TYPE
  CLUS_1              1               15
  CLUS_2              1               61
  CLUS_3              1               50
  CLUS_4              1               64
  CLUS_5              0               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID3A MUTATED        1      2      0      1
  ARID3A WILD-TYPE     97     42     50     56
D712V4, multiclass
        clus
vv       ARID3A MUTATED ARID3A WILD-TYPE
  CLUS_1              1               97
  CLUS_2              2               42
  CLUS_3              0               50
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID3A MUTATED        4      0      1      1      0
  ARID3A WILD-TYPE     58     59     39     36     59
D712V5, multiclass
        clus
vv       ARID3A MUTATED ARID3A WILD-TYPE
  CLUS_1              4               58
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID3A MUTATED        2      0      4
  ARID3A WILD-TYPE    104     54     93
D712V6, multiclass
        clus
vv       ARID3A MUTATED ARID3A WILD-TYPE
  CLUS_1              2              104
  CLUS_2              0               54
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID3A MUTATED        6      0      0
  ARID3A WILD-TYPE    117     95     71
D712V7, multiclass
        clus
vv       ARID3A MUTATED ARID3A WILD-TYPE
  CLUS_1              6              117
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID3A MUTATED        6      0      0
  ARID3A WILD-TYPE    151     63     69
D712V8, multiclass
        clus
vv       ARID3A MUTATED ARID3A WILD-TYPE
  CLUS_1              6              151
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARID3A MUTATED        1      1      2      1      0      0
  ARID3A WILD-TYPE     32     18     57     38     16     45
D712V9, multiclass
        clus
vv       ARID3A MUTATED ARID3A WILD-TYPE
  CLUS_1              1               32
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARID3A MUTATED        2      0      2      1      0      0
  ARID3A WILD-TYPE     45     39     33     31     23     35
D712V10, multiclass
        clus
vv       ARID3A MUTATED ARID3A WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(713) Variable = WSB2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WSB2 MUTATED        0      8      0      1      0
  WSB2 WILD-TYPE     79    118     27     42     12
D713V1, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            8            118
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WSB2 MUTATED        0      5      2      1
  WSB2 WILD-TYPE     71     71     32     62
D713V2, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            5             71
  CLUS_3            2             32
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WSB2 MUTATED        0      6      3      0      0
  WSB2 WILD-TYPE     16     56     48     65     55
D713V3, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            6             56
  CLUS_3            3             48
  CLUS_4            0             65
  CLUS_5            0             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WSB2 MUTATED        0      6      3      0
  WSB2 WILD-TYPE     98     38     47     57
D713V4, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            0             98
  CLUS_2            6             38
  CLUS_3            3             47
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WSB2 MUTATED        5      0      1      2      0
  WSB2 WILD-TYPE     57     59     39     35     59
D713V5, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            5             57
  CLUS_2            0             59
  CLUS_3            1             39
  CLUS_4            2             35
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WSB2 MUTATED        2      0      6
  WSB2 WILD-TYPE    104     54     91
D713V6, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            0             54
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WSB2 MUTATED        9      0      0
  WSB2 WILD-TYPE    114     95     71
D713V7, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            9            114
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WSB2 MUTATED        8      1      0
  WSB2 WILD-TYPE    149     62     69
D713V8, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            8            149
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WSB2 MUTATED        0      2      5      0      0      0
  WSB2 WILD-TYPE     33     17     54     39     16     45
D713V9, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            0             33
  CLUS_2            2             17
  CLUS_3            5             54
  CLUS_4            0             39
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WSB2 MUTATED        1      0      4      2      0      0
  WSB2 WILD-TYPE     46     39     31     30     23     35
D713V10, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            1             46
  CLUS_2            0             39
  CLUS_3            4             31
  CLUS_4            2             30
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(714) Variable = SMAD7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD7 MUTATED        1      2      0      1      0
  SMAD7 WILD-TYPE     78    124     27     42     12
D714V1, multiclass
        clus
vv       SMAD7 MUTATED SMAD7 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             2             124
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD7 MUTATED        1      2      0      0
  SMAD7 WILD-TYPE     70     74     34     63
D714V2, multiclass
        clus
vv       SMAD7 MUTATED SMAD7 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             2              74
  CLUS_3             0              34
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD7 MUTATED        0      2      1      1      0
  SMAD7 WILD-TYPE     16     60     50     64     55
D714V3, multiclass
        clus
vv       SMAD7 MUTATED SMAD7 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             1              50
  CLUS_4             1              64
  CLUS_5             0              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD7 MUTATED        0      1      2      1
  SMAD7 WILD-TYPE     98     43     48     56
D714V4, multiclass
        clus
vv       SMAD7 MUTATED SMAD7 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             1              43
  CLUS_3             2              48
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD7 MUTATED        1      2      0      1      1
  SMAD7 WILD-TYPE     61     57     40     36     58
D714V5, multiclass
        clus
vv       SMAD7 MUTATED SMAD7 WILD-TYPE
  CLUS_1             1              61
  CLUS_2             2              57
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD7 MUTATED        3      0      2
  SMAD7 WILD-TYPE    103     54     95
D714V6, multiclass
        clus
vv       SMAD7 MUTATED SMAD7 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             2              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD7 MUTATED        4      0      1
  SMAD7 WILD-TYPE    119     95     70
D714V7, multiclass
        clus
vv       SMAD7 MUTATED SMAD7 WILD-TYPE
  CLUS_1             4             119
  CLUS_2             0              95
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD7 MUTATED        4      0      1
  SMAD7 WILD-TYPE    153     63     68
D714V8, multiclass
        clus
vv       SMAD7 MUTATED SMAD7 WILD-TYPE
  CLUS_1             4             153
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMAD7 MUTATED        2      1      0      0      0      0
  SMAD7 WILD-TYPE     31     18     59     39     16     45
D714V9, multiclass
        clus
vv       SMAD7 MUTATED SMAD7 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              18
  CLUS_3             0              59
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMAD7 MUTATED        2      0      0      1      0      0
  SMAD7 WILD-TYPE     45     39     35     31     23     35
D714V10, multiclass
        clus
vv       SMAD7 MUTATED SMAD7 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             0              35
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(715) Variable = ROBO2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ROBO2 MUTATED        4     20      2      1      3
  ROBO2 WILD-TYPE     75    106     25     42      9
D715V1, multiclass
        clus
vv       ROBO2 MUTATED ROBO2 WILD-TYPE
  CLUS_1             4              75
  CLUS_2            20             106
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             3               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROBO2 MUTATED        2     15      3      3
  ROBO2 WILD-TYPE     69     61     31     60
D715V2, multiclass
        clus
vv       ROBO2 MUTATED ROBO2 WILD-TYPE
  CLUS_1             2              69
  CLUS_2            15              61
  CLUS_3             3              31
  CLUS_4             3              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ROBO2 MUTATED        2      7      5      5      8
  ROBO2 WILD-TYPE     14     55     46     60     47
D715V3, multiclass
        clus
vv       ROBO2 MUTATED ROBO2 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             7              55
  CLUS_3             5              46
  CLUS_4             5              60
  CLUS_5             8              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ROBO2 MUTATED        9     10      2      6
  ROBO2 WILD-TYPE     89     34     48     51
D715V4, multiclass
        clus
vv       ROBO2 MUTATED ROBO2 WILD-TYPE
  CLUS_1             9              89
  CLUS_2            10              34
  CLUS_3             2              48
  CLUS_4             6              51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ROBO2 MUTATED       13      1      5      7      4
  ROBO2 WILD-TYPE     49     58     35     30     55
D715V5, multiclass
        clus
vv       ROBO2 MUTATED ROBO2 WILD-TYPE
  CLUS_1            13              49
  CLUS_2             1              58
  CLUS_3             5              35
  CLUS_4             7              30
  CLUS_5             4              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ROBO2 MUTATED        7      6     17
  ROBO2 WILD-TYPE     99     48     80
D715V6, multiclass
        clus
vv       ROBO2 MUTATED ROBO2 WILD-TYPE
  CLUS_1             7              99
  CLUS_2             6              48
  CLUS_3            17              80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ROBO2 MUTATED       20      5      6
  ROBO2 WILD-TYPE    103     90     65
D715V7, multiclass
        clus
vv       ROBO2 MUTATED ROBO2 WILD-TYPE
  CLUS_1            20             103
  CLUS_2             5              90
  CLUS_3             6              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ROBO2 MUTATED       23      3      5
  ROBO2 WILD-TYPE    134     60     64
D715V8, multiclass
        clus
vv       ROBO2 MUTATED ROBO2 WILD-TYPE
  CLUS_1            23             134
  CLUS_2             3              60
  CLUS_3             5              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ROBO2 MUTATED        2      2      8      6      2      0
  ROBO2 WILD-TYPE     31     17     51     33     14     45
D715V9, multiclass
        clus
vv       ROBO2 MUTATED ROBO2 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             2              17
  CLUS_3             8              51
  CLUS_4             6              33
  CLUS_5             2              14
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ROBO2 MUTATED        4      0      6      4      5      1
  ROBO2 WILD-TYPE     43     39     29     28     18     34
D715V10, multiclass
        clus
vv       ROBO2 MUTATED ROBO2 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             0              39
  CLUS_3             6              29
  CLUS_4             4              28
  CLUS_5             5              18
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(716) Variable = GPATCH8 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPATCH8 MUTATED        2     19      1      0      1
  GPATCH8 WILD-TYPE     77    107     26     43     11
D716V1, multiclass
        clus
vv       GPATCH8 MUTATED GPATCH8 WILD-TYPE
  CLUS_1               2                77
  CLUS_2              19               107
  CLUS_3               1                26
  CLUS_4               0                43
  CLUS_5               1                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPATCH8 MUTATED        3      8      5      4
  GPATCH8 WILD-TYPE     68     68     29     59
D716V2, multiclass
        clus
vv       GPATCH8 MUTATED GPATCH8 WILD-TYPE
  CLUS_1               3                68
  CLUS_2               8                68
  CLUS_3               5                29
  CLUS_4               4                59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPATCH8 MUTATED        1      9      6      1      3
  GPATCH8 WILD-TYPE     15     53     45     64     52
D716V3, multiclass
        clus
vv       GPATCH8 MUTATED GPATCH8 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               9                53
  CLUS_3               6                45
  CLUS_4               1                64
  CLUS_5               3                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPATCH8 MUTATED        4      9      5      2
  GPATCH8 WILD-TYPE     94     35     45     55
D716V4, multiclass
        clus
vv       GPATCH8 MUTATED GPATCH8 WILD-TYPE
  CLUS_1               4                94
  CLUS_2               9                35
  CLUS_3               5                45
  CLUS_4               2                55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPATCH8 MUTATED        9      1      4      3      0
  GPATCH8 WILD-TYPE     53     58     36     34     59
D716V5, multiclass
        clus
vv       GPATCH8 MUTATED GPATCH8 WILD-TYPE
  CLUS_1               9                53
  CLUS_2               1                58
  CLUS_3               4                36
  CLUS_4               3                34
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GPATCH8 MUTATED        6      0     11
  GPATCH8 WILD-TYPE    100     54     86
D716V6, multiclass
        clus
vv       GPATCH8 MUTATED GPATCH8 WILD-TYPE
  CLUS_1               6               100
  CLUS_2               0                54
  CLUS_3              11                86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GPATCH8 MUTATED       16      3      4
  GPATCH8 WILD-TYPE    107     92     67
D716V7, multiclass
        clus
vv       GPATCH8 MUTATED GPATCH8 WILD-TYPE
  CLUS_1              16               107
  CLUS_2               3                92
  CLUS_3               4                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GPATCH8 MUTATED       17      3      3
  GPATCH8 WILD-TYPE    140     60     66
D716V8, multiclass
        clus
vv       GPATCH8 MUTATED GPATCH8 WILD-TYPE
  CLUS_1              17               140
  CLUS_2               3                60
  CLUS_3               3                66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPATCH8 MUTATED        3      2      9      1      1      1
  GPATCH8 WILD-TYPE     30     17     50     38     15     44
D716V9, multiclass
        clus
vv       GPATCH8 MUTATED GPATCH8 WILD-TYPE
  CLUS_1               3                30
  CLUS_2               2                17
  CLUS_3               9                50
  CLUS_4               1                38
  CLUS_5               1                15
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPATCH8 MUTATED        7      1      7      0      1      1
  GPATCH8 WILD-TYPE     40     38     28     32     22     34
D716V10, multiclass
        clus
vv       GPATCH8 MUTATED GPATCH8 WILD-TYPE
  CLUS_1               7                40
  CLUS_2               1                38
  CLUS_3               7                28
  CLUS_4               0                32
  CLUS_5               1                22
  CLUS_6               1                34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(717) Variable = AFP MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFP MUTATED        0      3      0      0      0
  AFP WILD-TYPE     79    123     27     43     12
D717V1, multiclass
        clus
vv       AFP MUTATED AFP WILD-TYPE
  CLUS_1           0            79
  CLUS_2           3           123
  CLUS_3           0            27
  CLUS_4           0            43
  CLUS_5           0            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFP MUTATED        0      2      0      0
  AFP WILD-TYPE     71     74     34     63
D717V2, multiclass
[1] "Remove cluster labels:" "AFP MUTATED"           
clus
  AFP MUTATED AFP WILD-TYPE 
            2           242 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6453    TCGA-BR-6454 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-6455    TCGA-BR-6456    TCGA-BR-6457    TCGA-BR-6458    TCGA-BR-6563 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705    TCGA-BR-6706 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-6707    TCGA-BR-6710    TCGA-BR-6801    TCGA-BR-6802    TCGA-BR-6803 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197    TCGA-BR-7703    TCGA-BR-7707 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-7715    TCGA-BR-7716    TCGA-BR-7717    TCGA-BR-7722    TCGA-BR-7723 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-7901    TCGA-BR-7957    TCGA-BR-7958    TCGA-BR-7959    TCGA-BR-8058 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8059    TCGA-BR-8077    TCGA-BR-8078    TCGA-BR-8080    TCGA-BR-8081 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8284    TCGA-BR-8286    TCGA-BR-8289    TCGA-BR-8291    TCGA-BR-8295 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8296    TCGA-BR-8297    TCGA-BR-8360    TCGA-BR-8361    TCGA-BR-8363 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8364    TCGA-BR-8365    TCGA-BR-8366    TCGA-BR-8367    TCGA-BR-8368 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8369    TCGA-BR-8370    TCGA-BR-8371    TCGA-BR-8372    TCGA-BR-8373 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8380    TCGA-BR-8381    TCGA-BR-8382    TCGA-BR-8384    TCGA-BR-8483 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8484    TCGA-BR-8485    TCGA-BR-8486    TCGA-BR-8487    TCGA-BR-8588 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8589    TCGA-BR-8590    TCGA-BR-8591    TCGA-BR-8592    TCGA-BR-8676 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8677    TCGA-BR-8678    TCGA-BR-8679    TCGA-BR-8680    TCGA-BR-8682 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8683    TCGA-BR-8686    TCGA-BR-8687    TCGA-BR-8690    TCGA-BR-A44T 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-A44U    TCGA-BR-A452    TCGA-BR-A453    TCGA-BR-A4CQ    TCGA-BR-A4CR 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-A4CS    TCGA-BR-A4IU    TCGA-BR-A4IV    TCGA-BR-A4IY    TCGA-BR-A4IZ 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-A4J1    TCGA-BR-A4J2    TCGA-BR-A4J4    TCGA-BR-A4J6    TCGA-BR-A4J7 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-A4J8    TCGA-BR-A4PD    TCGA-BR-A4PE    TCGA-BR-A4PF    TCGA-BR-A4QI 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-A4QL    TCGA-BR-A4QM    TCGA-CD-5798    TCGA-CD-5799    TCGA-CD-5800 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803    TCGA-CD-5804    TCGA-CD-5813 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-8524    TCGA-CD-8525    TCGA-CD-8526    TCGA-CD-8527    TCGA-CD-8528 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-8529    TCGA-CD-8530    TCGA-CD-8531    TCGA-CD-8532    TCGA-CD-8534 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-8535    TCGA-CD-8536    TCGA-CD-A486    TCGA-CD-A487    TCGA-CD-A489 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-A48A    TCGA-CD-A48C    TCGA-CD-A4MG    TCGA-CD-A4MH    TCGA-CD-A4MJ 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-4437    TCGA-CG-4441    TCGA-CG-5717    TCGA-CG-5718    TCGA-CG-5719 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723    TCGA-CG-5724 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728    TCGA-CG-5730    TCGA-CG-5732 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577    TCGA-D7-5578    TCGA-D7-5579 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520    TCGA-D7-6521    TCGA-D7-6522 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526    TCGA-D7-6527    TCGA-D7-6528 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818    TCGA-D7-6820    TCGA-D7-6822 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-8570    TCGA-D7-8572    TCGA-D7-8573    TCGA-D7-8574    TCGA-D7-8575 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-8576    TCGA-D7-8578    TCGA-D7-8579    TCGA-D7-A4YT    TCGA-D7-A4YU 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-A4YV    TCGA-D7-A4YX    TCGA-D7-A4YY    TCGA-D7-A4Z0    TCGA-EQ-5647 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-EQ-8122    TCGA-EQ-A4SO    TCGA-F1-6177    TCGA-F1-6874    TCGA-F1-6875 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-F1-A448    TCGA-FP-7735    TCGA-FP-7829    TCGA-FP-7916    TCGA-FP-7998 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-FP-8099    TCGA-FP-8209    TCGA-FP-8210    TCGA-FP-8211    TCGA-FP-8631 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-FP-A4BE    TCGA-FP-A4BF    TCGA-HF-7132    TCGA-HF-7133    TCGA-HF-7136 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HJ-7597    TCGA-HU-8243    TCGA-HU-8245    TCGA-HU-8249    TCGA-HU-8602 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-8604    TCGA-HU-8608    TCGA-HU-8610    TCGA-HU-A4G2    TCGA-HU-A4G3 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-A4G6    TCGA-HU-A4G8    TCGA-HU-A4G9    TCGA-HU-A4GC    TCGA-HU-A4GD 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-A4GF    TCGA-HU-A4GH    TCGA-HU-A4GN    TCGA-HU-A4GP    TCGA-HU-A4GQ 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-A4GT    TCGA-HU-A4GU    TCGA-HU-A4GX    TCGA-HU-A4GY    TCGA-HU-A4H0 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-A4H2    TCGA-HU-A4H3    TCGA-HU-A4H4    TCGA-HU-A4H5    TCGA-HU-A4H6 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-A4H8    TCGA-HU-A4HD    TCGA-IN-7806    TCGA-IN-7808    TCGA-IN-8462 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-IN-8663    TCGA-IP-7968 
"AFP WILD-TYPE" "AFP WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFP MUTATED        0      2      1      0      0
  AFP WILD-TYPE     16     60     50     65     55
D717V3, multiclass
        clus
vv       AFP MUTATED AFP WILD-TYPE
  CLUS_1           0            16
  CLUS_2           2            60
  CLUS_3           1            50
  CLUS_4           0            65
  CLUS_5           0            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFP MUTATED        1      1      1      0
  AFP WILD-TYPE     97     43     49     57
D717V4, multiclass
        clus
vv       AFP MUTATED AFP WILD-TYPE
  CLUS_1           1            97
  CLUS_2           1            43
  CLUS_3           1            49
  CLUS_4           0            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFP MUTATED        0      1      0      1      0
  AFP WILD-TYPE     62     58     40     36     59
D717V5, multiclass
[1] "Remove cluster labels:" "AFP MUTATED"           
clus
  AFP MUTATED AFP WILD-TYPE 
            2           255 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-4187    TCGA-BR-4191    TCGA-BR-4201 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-4253    TCGA-BR-4255    TCGA-BR-4256    TCGA-BR-4257    TCGA-BR-4267 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-4279    TCGA-BR-4280    TCGA-BR-4292    TCGA-BR-4294    TCGA-BR-4357 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-4361    TCGA-BR-4362    TCGA-BR-4363    TCGA-BR-4366    TCGA-BR-4368 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-4369    TCGA-BR-4370    TCGA-BR-4371    TCGA-BR-6452    TCGA-BR-6453 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-6454    TCGA-BR-6455    TCGA-BR-6456    TCGA-BR-6457    TCGA-BR-6458 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-6563    TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6710    TCGA-BR-6801    TCGA-BR-6802 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-6803    TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197    TCGA-BR-7703 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-7707    TCGA-BR-7715    TCGA-BR-7716    TCGA-BR-7717    TCGA-BR-7722 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-7723    TCGA-BR-7901    TCGA-BR-7957    TCGA-BR-7958    TCGA-BR-7959 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8058    TCGA-BR-8059    TCGA-BR-8077    TCGA-BR-8078    TCGA-BR-8080 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8081    TCGA-BR-8284    TCGA-BR-8286    TCGA-BR-8289    TCGA-BR-8291 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8297    TCGA-BR-8361    TCGA-BR-8363    TCGA-BR-8364    TCGA-BR-8365 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8366    TCGA-BR-8367    TCGA-BR-8368    TCGA-BR-8369    TCGA-BR-8371 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8372    TCGA-BR-8373    TCGA-BR-8380    TCGA-BR-8381    TCGA-BR-8382 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8384    TCGA-BR-8483    TCGA-BR-8484    TCGA-BR-8485    TCGA-BR-8486 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8487    TCGA-BR-8588    TCGA-BR-8589    TCGA-BR-8590    TCGA-BR-8591 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8592    TCGA-BR-8677    TCGA-BR-8678    TCGA-BR-8679    TCGA-BR-8680 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8682    TCGA-BR-8683    TCGA-BR-8686    TCGA-BR-8687    TCGA-BR-A44T 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-A452    TCGA-BR-A453    TCGA-BR-A4CR    TCGA-BR-A4CS    TCGA-BR-A4IU 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-A4IV    TCGA-BR-A4IY    TCGA-BR-A4IZ    TCGA-BR-A4J1    TCGA-BR-A4J2 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-A4J4    TCGA-BR-A4J6    TCGA-BR-A4J7    TCGA-BR-A4J8    TCGA-BR-A4PD 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-A4PE    TCGA-BR-A4PF    TCGA-BR-A4QI    TCGA-CD-5798    TCGA-CD-5799 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5803    TCGA-CD-5804    TCGA-CD-5813 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-8524    TCGA-CD-8526    TCGA-CD-8528    TCGA-CD-8529    TCGA-CD-8530 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-8531    TCGA-CD-8532    TCGA-CD-8534    TCGA-CD-8535    TCGA-CD-8536 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-A486    TCGA-CD-A487    TCGA-CD-A489    TCGA-CD-A48C    TCGA-CD-A4MG 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-A4MH    TCGA-CD-A4MJ    TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-4306    TCGA-CG-4436    TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-4441    TCGA-CG-4442    TCGA-CG-4443    TCGA-CG-4444    TCGA-CG-4449 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-4462    TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4474 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-4475    TCGA-CG-4476    TCGA-CG-4477    TCGA-CG-5717    TCGA-CG-5718 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-5724    TCGA-CG-5726    TCGA-CG-5732    TCGA-CG-5734    TCGA-D7-5577 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-5578    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520    TCGA-D7-6521 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526    TCGA-D7-6527 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818    TCGA-D7-6820 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-6822    TCGA-D7-8570    TCGA-D7-8572    TCGA-D7-8573    TCGA-D7-8574 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-8575    TCGA-D7-8576    TCGA-D7-8578    TCGA-D7-8579    TCGA-D7-A4YT 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-A4YU    TCGA-D7-A4YV    TCGA-D7-A4YX    TCGA-D7-A4YY    TCGA-D7-A4Z0 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-EQ-8122    TCGA-EQ-A4SO    TCGA-F1-6177    TCGA-F1-6874    TCGA-F1-6875 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-F1-A448    TCGA-FP-7735    TCGA-FP-7829    TCGA-FP-7916    TCGA-FP-7998 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-FP-8099    TCGA-FP-8209    TCGA-FP-8210    TCGA-FP-8211    TCGA-FP-8631 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-FP-A4BE    TCGA-HF-7132    TCGA-HF-7133    TCGA-HF-7136    TCGA-HU-8602 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-8604    TCGA-HU-8608    TCGA-HU-8610    TCGA-HU-A4G2    TCGA-HU-A4G3 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-A4G6    TCGA-HU-A4G8    TCGA-HU-A4G9    TCGA-HU-A4GC    TCGA-HU-A4GF 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-A4GH    TCGA-HU-A4GN    TCGA-HU-A4GP    TCGA-HU-A4GT    TCGA-HU-A4GU 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-A4GX    TCGA-HU-A4GY    TCGA-HU-A4H0    TCGA-HU-A4H2    TCGA-HU-A4H3 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-A4H4    TCGA-HU-A4H5    TCGA-HU-A4H6    TCGA-HU-A4H8    TCGA-HU-A4HD 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-IN-7806    TCGA-IN-7808    TCGA-IN-8462    TCGA-IN-8663    TCGA-IP-7968 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  AFP MUTATED        0      2      0
  AFP WILD-TYPE    106     52     97
D717V6, multiclass
[1] "Remove cluster labels:" "AFP MUTATED"           
clus
  AFP MUTATED AFP WILD-TYPE 
            2           255 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-4187    TCGA-BR-4191    TCGA-BR-4201 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-4253    TCGA-BR-4255    TCGA-BR-4256    TCGA-BR-4257    TCGA-BR-4267 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-4279    TCGA-BR-4280    TCGA-BR-4292    TCGA-BR-4294    TCGA-BR-4357 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-4361    TCGA-BR-4362    TCGA-BR-4363    TCGA-BR-4366    TCGA-BR-4368 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-4369    TCGA-BR-4370    TCGA-BR-4371    TCGA-BR-6452    TCGA-BR-6453 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-6454    TCGA-BR-6455    TCGA-BR-6456    TCGA-BR-6457    TCGA-BR-6458 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-6563    TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6710    TCGA-BR-6801    TCGA-BR-6802 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-6803    TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197    TCGA-BR-7703 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-7707    TCGA-BR-7715    TCGA-BR-7716    TCGA-BR-7717    TCGA-BR-7722 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-7723    TCGA-BR-7901    TCGA-BR-7957    TCGA-BR-7958    TCGA-BR-7959 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8058    TCGA-BR-8059    TCGA-BR-8077    TCGA-BR-8078    TCGA-BR-8080 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8081    TCGA-BR-8284    TCGA-BR-8286    TCGA-BR-8289    TCGA-BR-8291 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8297    TCGA-BR-8361    TCGA-BR-8363    TCGA-BR-8364    TCGA-BR-8365 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8366    TCGA-BR-8367    TCGA-BR-8368    TCGA-BR-8369    TCGA-BR-8371 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8372    TCGA-BR-8373    TCGA-BR-8380    TCGA-BR-8381    TCGA-BR-8382 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8384    TCGA-BR-8483    TCGA-BR-8484    TCGA-BR-8485    TCGA-BR-8486 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8487    TCGA-BR-8588    TCGA-BR-8589    TCGA-BR-8590    TCGA-BR-8591 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8592    TCGA-BR-8677    TCGA-BR-8678    TCGA-BR-8679    TCGA-BR-8680 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8682    TCGA-BR-8683    TCGA-BR-8686    TCGA-BR-8687    TCGA-BR-A44T 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-A452    TCGA-BR-A453    TCGA-BR-A4CR    TCGA-BR-A4CS    TCGA-BR-A4IU 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-A4IV    TCGA-BR-A4IY    TCGA-BR-A4IZ    TCGA-BR-A4J1    TCGA-BR-A4J2 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-A4J4    TCGA-BR-A4J6    TCGA-BR-A4J7    TCGA-BR-A4J8    TCGA-BR-A4PD 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-A4PE    TCGA-BR-A4PF    TCGA-BR-A4QI    TCGA-CD-5798    TCGA-CD-5799 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5803    TCGA-CD-5804    TCGA-CD-5813 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-8524    TCGA-CD-8526    TCGA-CD-8528    TCGA-CD-8529    TCGA-CD-8530 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-8531    TCGA-CD-8532    TCGA-CD-8534    TCGA-CD-8535    TCGA-CD-8536 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-A486    TCGA-CD-A487    TCGA-CD-A489    TCGA-CD-A48C    TCGA-CD-A4MG 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-A4MH    TCGA-CD-A4MJ    TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-4306    TCGA-CG-4436    TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-4441    TCGA-CG-4442    TCGA-CG-4443    TCGA-CG-4444    TCGA-CG-4449 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-4462    TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4474 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-4475    TCGA-CG-4476    TCGA-CG-4477    TCGA-CG-5717    TCGA-CG-5718 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-5724    TCGA-CG-5726    TCGA-CG-5732    TCGA-CG-5734    TCGA-D7-5577 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-5578    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520    TCGA-D7-6521 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526    TCGA-D7-6527 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818    TCGA-D7-6820 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-6822    TCGA-D7-8570    TCGA-D7-8572    TCGA-D7-8573    TCGA-D7-8574 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-8575    TCGA-D7-8576    TCGA-D7-8578    TCGA-D7-8579    TCGA-D7-A4YT 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-A4YU    TCGA-D7-A4YV    TCGA-D7-A4YX    TCGA-D7-A4YY    TCGA-D7-A4Z0 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-EQ-8122    TCGA-EQ-A4SO    TCGA-F1-6177    TCGA-F1-6874    TCGA-F1-6875 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-F1-A448    TCGA-FP-7735    TCGA-FP-7829    TCGA-FP-7916    TCGA-FP-7998 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-FP-8099    TCGA-FP-8209    TCGA-FP-8210    TCGA-FP-8211    TCGA-FP-8631 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-FP-A4BE    TCGA-HF-7132    TCGA-HF-7133    TCGA-HF-7136    TCGA-HU-8602 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-8604    TCGA-HU-8608    TCGA-HU-8610    TCGA-HU-A4G2    TCGA-HU-A4G3 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-A4G6    TCGA-HU-A4G8    TCGA-HU-A4G9    TCGA-HU-A4GC    TCGA-HU-A4GF 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-A4GH    TCGA-HU-A4GN    TCGA-HU-A4GP    TCGA-HU-A4GT    TCGA-HU-A4GU 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-A4GX    TCGA-HU-A4GY    TCGA-HU-A4H0    TCGA-HU-A4H2    TCGA-HU-A4H3 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-A4H4    TCGA-HU-A4H5    TCGA-HU-A4H6    TCGA-HU-A4H8    TCGA-HU-A4HD 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-IN-7806    TCGA-IN-7808    TCGA-IN-8462    TCGA-IN-8663    TCGA-IP-7968 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  AFP MUTATED        1      2      0
  AFP WILD-TYPE    122     93     71
D717V7, multiclass
        clus
vv       AFP MUTATED AFP WILD-TYPE
  CLUS_1           1           122
  CLUS_2           2            93
  CLUS_3           0            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  AFP MUTATED        2      1      0
  AFP WILD-TYPE    155     62     69
D717V8, multiclass
        clus
vv       AFP MUTATED AFP WILD-TYPE
  CLUS_1           2           155
  CLUS_2           1            62
  CLUS_3           0            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AFP MUTATED        0      0      0      1      0      1
  AFP WILD-TYPE     33     19     59     38     16     44
D717V9, multiclass
[1] "Remove cluster labels:" "AFP MUTATED"           
clus
  AFP MUTATED AFP WILD-TYPE 
            2           209 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6453    TCGA-BR-6454 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-6455    TCGA-BR-6456    TCGA-BR-6457    TCGA-BR-6458    TCGA-BR-6563 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705    TCGA-BR-6706 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-6707    TCGA-BR-6710    TCGA-BR-6801    TCGA-BR-6802    TCGA-BR-6803 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197    TCGA-BR-7703    TCGA-BR-7707 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-7715    TCGA-BR-7717    TCGA-BR-7723    TCGA-BR-7901    TCGA-BR-7957 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-7958    TCGA-BR-7959    TCGA-BR-8058    TCGA-BR-8059    TCGA-BR-8077 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8078    TCGA-BR-8080    TCGA-BR-8284    TCGA-BR-8286    TCGA-BR-8289 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8291    TCGA-BR-8295    TCGA-BR-8296    TCGA-BR-8297    TCGA-BR-8360 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8361    TCGA-BR-8363    TCGA-BR-8364    TCGA-BR-8365    TCGA-BR-8368 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8369    TCGA-BR-8370    TCGA-BR-8371    TCGA-BR-8372    TCGA-BR-8373 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8380    TCGA-BR-8381    TCGA-BR-8382    TCGA-BR-8384    TCGA-BR-8483 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8485    TCGA-BR-8486    TCGA-BR-8487    TCGA-BR-8588    TCGA-BR-8590 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8591    TCGA-BR-8592    TCGA-BR-8676    TCGA-BR-8677    TCGA-BR-8678 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8679    TCGA-BR-8680    TCGA-BR-8682    TCGA-BR-8683    TCGA-BR-8687 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8690    TCGA-BR-A44T    TCGA-BR-A452    TCGA-BR-A453    TCGA-BR-A4CQ 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-A4CR    TCGA-BR-A4CS    TCGA-BR-A4IU    TCGA-BR-A4IV    TCGA-BR-A4IY 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-A4IZ    TCGA-BR-A4J1    TCGA-BR-A4J6    TCGA-BR-A4J7    TCGA-BR-A4J8 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-A4PD    TCGA-BR-A4QI    TCGA-BR-A4QL    TCGA-BR-A4QM    TCGA-CD-5798 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-5799    TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-5804    TCGA-CD-5813    TCGA-CD-8524    TCGA-CD-8525    TCGA-CD-8526 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-8527    TCGA-CD-8529    TCGA-CD-8530    TCGA-CD-8531    TCGA-CD-8532 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-8534    TCGA-CD-8535    TCGA-CD-8536    TCGA-CD-A486    TCGA-CD-A487 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-A489    TCGA-CD-A48C    TCGA-CD-A4MG    TCGA-CD-A4MH    TCGA-CG-4437 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-4441    TCGA-CG-4449    TCGA-CG-5717    TCGA-CG-5718    TCGA-CG-5719 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723    TCGA-CG-5724 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728    TCGA-CG-5730    TCGA-CG-5732 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577    TCGA-D7-5578    TCGA-D7-5579 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520    TCGA-D7-6521    TCGA-D7-6522 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526    TCGA-D7-6527    TCGA-D7-6528 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818    TCGA-D7-6820    TCGA-D7-6822 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-8570    TCGA-D7-8572    TCGA-D7-8574    TCGA-D7-8575    TCGA-D7-8576 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-8578    TCGA-D7-8579    TCGA-D7-A4YT    TCGA-D7-A4YU    TCGA-D7-A4YV 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-A4YY    TCGA-D7-A4Z0    TCGA-EQ-5647    TCGA-EQ-8122    TCGA-F1-6177 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-F1-6874    TCGA-F1-6875    TCGA-F1-A448    TCGA-FP-7735    TCGA-FP-7829 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-FP-7998    TCGA-FP-8099    TCGA-FP-8209    TCGA-FP-8210    TCGA-FP-8211 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-FP-8631    TCGA-FP-A4BE    TCGA-HF-7132    TCGA-HF-7136    TCGA-HU-8243 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-8602    TCGA-HU-8604    TCGA-HU-8608    TCGA-HU-A4G3    TCGA-HU-A4G8 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-A4GC    TCGA-HU-A4GD    TCGA-HU-A4GF    TCGA-HU-A4GH    TCGA-HU-A4GN 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-A4GQ    TCGA-HU-A4GT    TCGA-HU-A4GX    TCGA-HU-A4GY    TCGA-HU-A4H2 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-A4H4    TCGA-HU-A4H5    TCGA-HU-A4H6    TCGA-HU-A4H8    TCGA-IN-7806 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-IN-7808    TCGA-IN-8462    TCGA-IN-8663    TCGA-IP-7968 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AFP MUTATED        0      1      0      0      1      0
  AFP WILD-TYPE     47     38     35     32     22     35
D717V10, multiclass
[1] "Remove cluster labels:" "AFP MUTATED"           
clus
  AFP MUTATED AFP WILD-TYPE 
            2           209 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-6452    TCGA-BR-6453    TCGA-BR-6454 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-6455    TCGA-BR-6456    TCGA-BR-6457    TCGA-BR-6458    TCGA-BR-6563 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705    TCGA-BR-6706 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-6707    TCGA-BR-6710    TCGA-BR-6801    TCGA-BR-6802    TCGA-BR-6803 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197    TCGA-BR-7703    TCGA-BR-7707 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-7715    TCGA-BR-7717    TCGA-BR-7723    TCGA-BR-7901    TCGA-BR-7957 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-7958    TCGA-BR-7959    TCGA-BR-8058    TCGA-BR-8059    TCGA-BR-8077 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8078    TCGA-BR-8080    TCGA-BR-8284    TCGA-BR-8286    TCGA-BR-8289 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8291    TCGA-BR-8295    TCGA-BR-8296    TCGA-BR-8297    TCGA-BR-8360 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8361    TCGA-BR-8363    TCGA-BR-8364    TCGA-BR-8365    TCGA-BR-8368 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8369    TCGA-BR-8370    TCGA-BR-8371    TCGA-BR-8372    TCGA-BR-8373 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8380    TCGA-BR-8381    TCGA-BR-8382    TCGA-BR-8384    TCGA-BR-8483 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8485    TCGA-BR-8486    TCGA-BR-8487    TCGA-BR-8588    TCGA-BR-8590 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8591    TCGA-BR-8592    TCGA-BR-8676    TCGA-BR-8677    TCGA-BR-8678 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8679    TCGA-BR-8680    TCGA-BR-8682    TCGA-BR-8683    TCGA-BR-8687 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-8690    TCGA-BR-A44T    TCGA-BR-A452    TCGA-BR-A453    TCGA-BR-A4CQ 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-A4CR    TCGA-BR-A4CS    TCGA-BR-A4IU    TCGA-BR-A4IV    TCGA-BR-A4IY 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-A4IZ    TCGA-BR-A4J1    TCGA-BR-A4J6    TCGA-BR-A4J7    TCGA-BR-A4J8 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-BR-A4PD    TCGA-BR-A4QI    TCGA-BR-A4QL    TCGA-BR-A4QM    TCGA-CD-5798 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-5799    TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-5804    TCGA-CD-5813    TCGA-CD-8524    TCGA-CD-8525    TCGA-CD-8526 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-8527    TCGA-CD-8529    TCGA-CD-8530    TCGA-CD-8531    TCGA-CD-8532 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-8534    TCGA-CD-8535    TCGA-CD-8536    TCGA-CD-A486    TCGA-CD-A487 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CD-A489    TCGA-CD-A48C    TCGA-CD-A4MG    TCGA-CD-A4MH    TCGA-CG-4437 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-4441    TCGA-CG-4449    TCGA-CG-5717    TCGA-CG-5718    TCGA-CG-5719 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723    TCGA-CG-5724 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728    TCGA-CG-5730    TCGA-CG-5732 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577    TCGA-D7-5578    TCGA-D7-5579 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520    TCGA-D7-6521    TCGA-D7-6522 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526    TCGA-D7-6527    TCGA-D7-6528 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818    TCGA-D7-6820    TCGA-D7-6822 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-8570    TCGA-D7-8572    TCGA-D7-8574    TCGA-D7-8575    TCGA-D7-8576 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-8578    TCGA-D7-8579    TCGA-D7-A4YT    TCGA-D7-A4YU    TCGA-D7-A4YV 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-D7-A4YY    TCGA-D7-A4Z0    TCGA-EQ-5647    TCGA-EQ-8122    TCGA-F1-6177 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-F1-6874    TCGA-F1-6875    TCGA-F1-A448    TCGA-FP-7735    TCGA-FP-7829 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-FP-7998    TCGA-FP-8099    TCGA-FP-8209    TCGA-FP-8210    TCGA-FP-8211 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-FP-8631    TCGA-FP-A4BE    TCGA-HF-7132    TCGA-HF-7136    TCGA-HU-8243 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-8602    TCGA-HU-8604    TCGA-HU-8608    TCGA-HU-A4G3    TCGA-HU-A4G8 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-A4GC    TCGA-HU-A4GD    TCGA-HU-A4GF    TCGA-HU-A4GH    TCGA-HU-A4GN 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-A4GQ    TCGA-HU-A4GT    TCGA-HU-A4GX    TCGA-HU-A4GY    TCGA-HU-A4H2 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-HU-A4H4    TCGA-HU-A4H5    TCGA-HU-A4H6    TCGA-HU-A4H8    TCGA-IN-7806 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 
   TCGA-IN-7808    TCGA-IN-8462    TCGA-IN-8663    TCGA-IP-7968 
"AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" "AFP WILD-TYPE" 

Clustering(718) Variable = CPD MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPD MUTATED        0      7      1      1      0
  CPD WILD-TYPE     79    119     26     42     12
D718V1, multiclass
        clus
vv       CPD MUTATED CPD WILD-TYPE
  CLUS_1           0            79
  CLUS_2           7           119
  CLUS_3           1            26
  CLUS_4           1            42
  CLUS_5           0            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPD MUTATED        0      7      0      1
  CPD WILD-TYPE     71     69     34     62
D718V2, multiclass
        clus
vv       CPD MUTATED CPD WILD-TYPE
  CLUS_1           0            71
  CLUS_2           7            69
  CLUS_3           0            34
  CLUS_4           1            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPD MUTATED        0      2      2      0      3
  CPD WILD-TYPE     16     60     49     65     52
D718V3, multiclass
        clus
vv       CPD MUTATED CPD WILD-TYPE
  CLUS_1           0            16
  CLUS_2           2            60
  CLUS_3           2            49
  CLUS_4           0            65
  CLUS_5           3            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPD MUTATED        0      6      1      0
  CPD WILD-TYPE     98     38     49     57
D718V4, multiclass
        clus
vv       CPD MUTATED CPD WILD-TYPE
  CLUS_1           0            98
  CLUS_2           6            38
  CLUS_3           1            49
  CLUS_4           0            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPD MUTATED        6      0      0      3      0
  CPD WILD-TYPE     56     59     40     34     59
D718V5, multiclass
        clus
vv       CPD MUTATED CPD WILD-TYPE
  CLUS_1           6            56
  CLUS_2           0            59
  CLUS_3           0            40
  CLUS_4           3            34
  CLUS_5           0            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CPD MUTATED        1      0      8
  CPD WILD-TYPE    105     54     89
D718V6, multiclass
        clus
vv       CPD MUTATED CPD WILD-TYPE
  CLUS_1           1           105
  CLUS_2           0            54
  CLUS_3           8            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CPD MUTATED        9      0      0
  CPD WILD-TYPE    114     95     71
D718V7, multiclass
        clus
vv       CPD MUTATED CPD WILD-TYPE
  CLUS_1           9           114
  CLUS_2           0            95
  CLUS_3           0            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CPD MUTATED        8      1      0
  CPD WILD-TYPE    149     62     69
D718V8, multiclass
        clus
vv       CPD MUTATED CPD WILD-TYPE
  CLUS_1           8           149
  CLUS_2           1            62
  CLUS_3           0            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CPD MUTATED        2      1      2      2      0      0
  CPD WILD-TYPE     31     18     57     37     16     45
D718V9, multiclass
        clus
vv       CPD MUTATED CPD WILD-TYPE
  CLUS_1           2            31
  CLUS_2           1            18
  CLUS_3           2            57
  CLUS_4           2            37
  CLUS_5           0            16
  CLUS_6           0            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CPD MUTATED        3      0      2      2      0      0
  CPD WILD-TYPE     44     39     33     30     23     35
D718V10, multiclass
        clus
vv       CPD MUTATED CPD WILD-TYPE
  CLUS_1           3            44
  CLUS_2           0            39
  CLUS_3           2            33
  CLUS_4           2            30
  CLUS_5           0            23
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(719) Variable = RFX5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RFX5 MUTATED        1      8      0      0      1
  RFX5 WILD-TYPE     78    118     27     43     11
D719V1, multiclass
        clus
vv       RFX5 MUTATED RFX5 WILD-TYPE
  CLUS_1            1             78
  CLUS_2            8            118
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RFX5 MUTATED        1      8      1      0
  RFX5 WILD-TYPE     70     68     33     63
D719V2, multiclass
        clus
vv       RFX5 MUTATED RFX5 WILD-TYPE
  CLUS_1            1             70
  CLUS_2            8             68
  CLUS_3            1             33
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RFX5 MUTATED        1      2      2      0      2
  RFX5 WILD-TYPE     15     60     49     65     53
D719V3, multiclass
        clus
vv       RFX5 MUTATED RFX5 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            2             60
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RFX5 MUTATED        2      3      1      1
  RFX5 WILD-TYPE     96     41     49     56
D719V4, multiclass
        clus
vv       RFX5 MUTATED RFX5 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            3             41
  CLUS_3            1             49
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RFX5 MUTATED        4      1      3      1      1
  RFX5 WILD-TYPE     58     58     37     36     58
D719V5, multiclass
        clus
vv       RFX5 MUTATED RFX5 WILD-TYPE
  CLUS_1            4             58
  CLUS_2            1             58
  CLUS_3            3             37
  CLUS_4            1             36
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RFX5 MUTATED        1      1      8
  RFX5 WILD-TYPE    105     53     89
D719V6, multiclass
        clus
vv       RFX5 MUTATED RFX5 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            1             53
  CLUS_3            8             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RFX5 MUTATED        8      0      2
  RFX5 WILD-TYPE    115     95     69
D719V7, multiclass
        clus
vv       RFX5 MUTATED RFX5 WILD-TYPE
  CLUS_1            8            115
  CLUS_2            0             95
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RFX5 MUTATED        9      0      1
  RFX5 WILD-TYPE    148     63     68
D719V8, multiclass
        clus
vv       RFX5 MUTATED RFX5 WILD-TYPE
  CLUS_1            9            148
  CLUS_2            0             63
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RFX5 MUTATED        3      1      2      3      0      0
  RFX5 WILD-TYPE     30     18     57     36     16     45
D719V9, multiclass
        clus
vv       RFX5 MUTATED RFX5 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            1             18
  CLUS_3            2             57
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RFX5 MUTATED        2      0      2      4      1      0
  RFX5 WILD-TYPE     45     39     33     28     22     35
D719V10, multiclass
        clus
vv       RFX5 MUTATED RFX5 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            2             33
  CLUS_4            4             28
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(720) Variable = FER MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FER MUTATED        3      7      1      0      0
  FER WILD-TYPE     76    119     26     43     12
D720V1, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           3            76
  CLUS_2           7           119
  CLUS_3           1            26
  CLUS_4           0            43
  CLUS_5           0            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FER MUTATED        2      6      1      1
  FER WILD-TYPE     69     70     33     62
D720V2, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           2            69
  CLUS_2           6            70
  CLUS_3           1            33
  CLUS_4           1            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FER MUTATED        3      2      3      0      2
  FER WILD-TYPE     13     60     48     65     53
D720V3, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           3            13
  CLUS_2           2            60
  CLUS_3           3            48
  CLUS_4           0            65
  CLUS_5           2            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FER MUTATED        4      6      0      0
  FER WILD-TYPE     94     38     50     57
D720V4, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           4            94
  CLUS_2           6            38
  CLUS_3           0            50
  CLUS_4           0            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FER MUTATED        6      0      1      1      2
  FER WILD-TYPE     56     59     39     36     57
D720V5, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           6            56
  CLUS_2           0            59
  CLUS_3           1            39
  CLUS_4           1            36
  CLUS_5           2            57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FER MUTATED        3      0      7
  FER WILD-TYPE    103     54     90
D720V6, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           3           103
  CLUS_2           0            54
  CLUS_3           7            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FER MUTATED        7      1      3
  FER WILD-TYPE    116     94     68
D720V7, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           7           116
  CLUS_2           1            94
  CLUS_3           3            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FER MUTATED        9      1      1
  FER WILD-TYPE    148     62     68
D720V8, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           9           148
  CLUS_2           1            62
  CLUS_3           1            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FER MUTATED        4      0      2      1      0      1
  FER WILD-TYPE     29     19     57     38     16     44
D720V9, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           4            29
  CLUS_2           0            19
  CLUS_3           2            57
  CLUS_4           1            38
  CLUS_5           0            16
  CLUS_6           1            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FER MUTATED        2      1      2      2      0      1
  FER WILD-TYPE     45     38     33     30     23     34
D720V10, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           2            45
  CLUS_2           1            38
  CLUS_3           2            33
  CLUS_4           2            30
  CLUS_5           0            23
  CLUS_6           1            34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(721) Variable = SNRPA MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNRPA MUTATED        1      5      0      1      1
  SNRPA WILD-TYPE     78    121     27     42     11
D721V1, multiclass
        clus
vv       SNRPA MUTATED SNRPA WILD-TYPE
  CLUS_1             1              78
  CLUS_2             5             121
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNRPA MUTATED        0      2      2      1
  SNRPA WILD-TYPE     71     74     32     62
D721V2, multiclass
        clus
vv       SNRPA MUTATED SNRPA WILD-TYPE
  CLUS_1             0              71
  CLUS_2             2              74
  CLUS_3             2              32
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNRPA MUTATED        1      3      2      0      2
  SNRPA WILD-TYPE     15     59     49     65     53
D721V3, multiclass
        clus
vv       SNRPA MUTATED SNRPA WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3              59
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNRPA MUTATED        3      3      2      0
  SNRPA WILD-TYPE     95     41     48     57
D721V4, multiclass
        clus
vv       SNRPA MUTATED SNRPA WILD-TYPE
  CLUS_1             3              95
  CLUS_2             3              41
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNRPA MUTATED        3      0      0      4      1
  SNRPA WILD-TYPE     59     59     40     33     58
D721V5, multiclass
        clus
vv       SNRPA MUTATED SNRPA WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             4              33
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SNRPA MUTATED        2      1      5
  SNRPA WILD-TYPE    104     53     92
D721V6, multiclass
        clus
vv       SNRPA MUTATED SNRPA WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              53
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SNRPA MUTATED        6      1      1
  SNRPA WILD-TYPE    117     94     70
D721V7, multiclass
        clus
vv       SNRPA MUTATED SNRPA WILD-TYPE
  CLUS_1             6             117
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SNRPA MUTATED        7      0      1
  SNRPA WILD-TYPE    150     63     68
D721V8, multiclass
        clus
vv       SNRPA MUTATED SNRPA WILD-TYPE
  CLUS_1             7             150
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SNRPA MUTATED        1      1      0      1      0      0
  SNRPA WILD-TYPE     32     18     59     38     16     45
D721V9, multiclass
        clus
vv       SNRPA MUTATED SNRPA WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             0              59
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SNRPA MUTATED        0      1      0      0      1      1
  SNRPA WILD-TYPE     47     38     35     32     22     34
D721V10, multiclass
        clus
vv       SNRPA MUTATED SNRPA WILD-TYPE
  CLUS_1             0              47
  CLUS_2             1              38
  CLUS_3             0              35
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(722) Variable = C2ORF43 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C2ORF43 MUTATED        0      1      2      0      0
  C2ORF43 WILD-TYPE     79    125     25     43     12
D722V1, multiclass
        clus
vv       C2ORF43 MUTATED C2ORF43 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               1               125
  CLUS_3               2                25
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF43 MUTATED        0      1      0      1
  C2ORF43 WILD-TYPE     71     75     34     62
D722V2, multiclass
[1] "Remove cluster labels:" "C2ORF43 MUTATED"       
clus
  C2ORF43 MUTATED C2ORF43 WILD-TYPE 
                2               242 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6453 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-7707        TCGA-BR-7715        TCGA-BR-7716        TCGA-BR-7717 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-7722        TCGA-BR-7723        TCGA-BR-7851        TCGA-BR-7901 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-7957        TCGA-BR-7958        TCGA-BR-7959        TCGA-BR-8058 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8059        TCGA-BR-8077        TCGA-BR-8078        TCGA-BR-8080 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8081        TCGA-BR-8284        TCGA-BR-8286        TCGA-BR-8289 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8296        TCGA-BR-8297 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8360        TCGA-BR-8361        TCGA-BR-8363        TCGA-BR-8364 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8365        TCGA-BR-8366        TCGA-BR-8367        TCGA-BR-8368 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8369        TCGA-BR-8370        TCGA-BR-8371        TCGA-BR-8372 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8373        TCGA-BR-8380        TCGA-BR-8381        TCGA-BR-8382 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8384        TCGA-BR-8483        TCGA-BR-8484        TCGA-BR-8485 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8486        TCGA-BR-8487        TCGA-BR-8588        TCGA-BR-8589 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8680 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8686        TCGA-BR-8687 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8690        TCGA-BR-A44T        TCGA-BR-A44U        TCGA-BR-A452 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-A453        TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-A4IU        TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-A4J1        TCGA-BR-A4J2        TCGA-BR-A4J4        TCGA-BR-A4J6 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4PE 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-A4PF        TCGA-BR-A4QI        TCGA-BR-A4QL        TCGA-BR-A4QM 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CD-5798        TCGA-CD-5799        TCGA-CD-5800        TCGA-CD-5801 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CD-5802        TCGA-CD-5803        TCGA-CD-5804        TCGA-CD-5813 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CD-8524        TCGA-CD-8525        TCGA-CD-8526        TCGA-CD-8527 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CD-8528        TCGA-CD-8529        TCGA-CD-8530        TCGA-CD-8531 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CD-8532        TCGA-CD-8534        TCGA-CD-8535        TCGA-CD-8536 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CD-A486        TCGA-CD-A487        TCGA-CD-A489        TCGA-CD-A48A 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CD-A48C        TCGA-CD-A4MH        TCGA-CD-A4MI        TCGA-CD-A4MJ 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CG-4437        TCGA-CG-4441        TCGA-CG-5717        TCGA-CG-5718 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721        TCGA-CG-5722 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5726        TCGA-CG-5727 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CG-5728        TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CG-5734        TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6522 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-D7-8570        TCGA-D7-8572 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-D7-8573        TCGA-D7-8574        TCGA-D7-8575        TCGA-D7-8576 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-D7-8578        TCGA-D7-8579        TCGA-D7-A4YT        TCGA-D7-A4YU 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-D7-A4YV        TCGA-D7-A4YX        TCGA-D7-A4YY        TCGA-D7-A4Z0 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-EQ-5647        TCGA-EQ-8122        TCGA-EQ-A4SO        TCGA-F1-6177 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-F1-6874        TCGA-F1-6875        TCGA-F1-A448        TCGA-FP-7735 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-FP-7829        TCGA-FP-7916        TCGA-FP-7998        TCGA-FP-8099 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-FP-8209        TCGA-FP-8210        TCGA-FP-8211        TCGA-FP-8631 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-FP-A4BE        TCGA-FP-A4BF        TCGA-HF-7132        TCGA-HF-7133 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-HF-7136        TCGA-HJ-7597        TCGA-HU-8243        TCGA-HU-8245 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-HU-8249        TCGA-HU-8602        TCGA-HU-8604        TCGA-HU-8608 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-HU-8610        TCGA-HU-A4G2        TCGA-HU-A4G3        TCGA-HU-A4G6 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-HU-A4G8        TCGA-HU-A4G9        TCGA-HU-A4GC        TCGA-HU-A4GD 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GN        TCGA-HU-A4GP 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-HU-A4GQ        TCGA-HU-A4GT        TCGA-HU-A4GU        TCGA-HU-A4GX 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-HU-A4GY        TCGA-HU-A4H0        TCGA-HU-A4H2        TCGA-HU-A4H3 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4H6        TCGA-HU-A4H8 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-HU-A4HD        TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-IN-8663        TCGA-IP-7968 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C2ORF43 MUTATED        0      0      0      0      3
  C2ORF43 WILD-TYPE     16     62     51     65     52
D722V3, multiclass
        clus
vv       C2ORF43 MUTATED C2ORF43 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               0                62
  CLUS_3               0                51
  CLUS_4               0                65
  CLUS_5               3                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF43 MUTATED        0      2      0      1
  C2ORF43 WILD-TYPE     98     42     50     56
D722V4, multiclass
        clus
vv       C2ORF43 MUTATED C2ORF43 WILD-TYPE
  CLUS_1               0                98
  CLUS_2               2                42
  CLUS_3               0                50
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C2ORF43 MUTATED        0      0      2      1      0
  C2ORF43 WILD-TYPE     62     59     38     36     59
D722V5, multiclass
        clus
vv       C2ORF43 MUTATED C2ORF43 WILD-TYPE
  CLUS_1               0                62
  CLUS_2               0                59
  CLUS_3               2                38
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C2ORF43 MUTATED        1      0      2
  C2ORF43 WILD-TYPE    105     54     95
D722V6, multiclass
        clus
vv       C2ORF43 MUTATED C2ORF43 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               0                54
  CLUS_3               2                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C2ORF43 MUTATED        2      1      0
  C2ORF43 WILD-TYPE    121     94     71
D722V7, multiclass
        clus
vv       C2ORF43 MUTATED C2ORF43 WILD-TYPE
  CLUS_1               2               121
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C2ORF43 MUTATED        3      0      0
  C2ORF43 WILD-TYPE    154     63     69
D722V8, multiclass
        clus
vv       C2ORF43 MUTATED C2ORF43 WILD-TYPE
  CLUS_1               3               154
  CLUS_2               0                63
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C2ORF43 MUTATED        0      1      0      0      0      1
  C2ORF43 WILD-TYPE     33     18     59     39     16     44
D722V9, multiclass
[1] "Remove cluster labels:" "C2ORF43 MUTATED"       
clus
  C2ORF43 MUTATED C2ORF43 WILD-TYPE 
                2               209 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6453 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-7707        TCGA-BR-7715        TCGA-BR-7717        TCGA-BR-7723 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7958 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8077 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8078        TCGA-BR-8080        TCGA-BR-8284        TCGA-BR-8286 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8289        TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8296 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8297        TCGA-BR-8360        TCGA-BR-8361        TCGA-BR-8363 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8364        TCGA-BR-8365        TCGA-BR-8368        TCGA-BR-8369 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8370        TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8373 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8380        TCGA-BR-8381        TCGA-BR-8382        TCGA-BR-8384 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8483        TCGA-BR-8485        TCGA-BR-8486        TCGA-BR-8487 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8588        TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8676        TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8680        TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8687 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8690        TCGA-BR-A44T        TCGA-BR-A452        TCGA-BR-A453 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-A4J6        TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-A4QI        TCGA-BR-A4QL        TCGA-BR-A4QM        TCGA-CD-5798 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CD-5799        TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CD-5803        TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CD-8525        TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8529 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CD-8530        TCGA-CD-8531        TCGA-CD-8532        TCGA-CD-8534 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CD-8535        TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CD-A489        TCGA-CD-A48C        TCGA-CD-A4MH        TCGA-CD-A4MI 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CG-4437        TCGA-CG-4441        TCGA-CG-4449        TCGA-CG-5717 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5726 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CG-5727        TCGA-CG-5728        TCGA-CG-5730        TCGA-CG-5732 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CG-5733        TCGA-CG-5734        TCGA-D7-5577        TCGA-D7-5578 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-D7-5579        TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822        TCGA-D7-8570 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-D7-8572        TCGA-D7-8574        TCGA-D7-8575        TCGA-D7-8576 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-D7-8578        TCGA-D7-8579        TCGA-D7-A4YT        TCGA-D7-A4YU 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-D7-A4YV        TCGA-D7-A4YY        TCGA-D7-A4Z0        TCGA-EQ-5647 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-EQ-8122        TCGA-F1-6177        TCGA-F1-6874        TCGA-F1-6875 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-F1-A448        TCGA-FP-7735        TCGA-FP-7829        TCGA-FP-7998 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-FP-8099        TCGA-FP-8209        TCGA-FP-8210        TCGA-FP-8211 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-FP-8631        TCGA-FP-A4BE        TCGA-HF-7132        TCGA-HF-7136 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-HU-8243        TCGA-HU-8602        TCGA-HU-8604        TCGA-HU-8608 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-HU-A4G3        TCGA-HU-A4G8        TCGA-HU-A4GC        TCGA-HU-A4GD 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GN        TCGA-HU-A4GQ 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-HU-A4GT        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H2 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4H6        TCGA-HU-A4H8 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-IP-7968 
"C2ORF43 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C2ORF43 MUTATED        1      0      0      1      0      0
  C2ORF43 WILD-TYPE     46     39     35     31     23     35
D722V10, multiclass
[1] "Remove cluster labels:" "C2ORF43 MUTATED"       
clus
  C2ORF43 MUTATED C2ORF43 WILD-TYPE 
                2               209 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-BR-6452        TCGA-BR-6453 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-7707        TCGA-BR-7715        TCGA-BR-7717        TCGA-BR-7723 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7958 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8077 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8078        TCGA-BR-8080        TCGA-BR-8284        TCGA-BR-8286 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8289        TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8296 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8297        TCGA-BR-8360        TCGA-BR-8361        TCGA-BR-8363 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8364        TCGA-BR-8365        TCGA-BR-8368        TCGA-BR-8369 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8370        TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8373 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8380        TCGA-BR-8381        TCGA-BR-8382        TCGA-BR-8384 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8483        TCGA-BR-8485        TCGA-BR-8486        TCGA-BR-8487 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8588        TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8676        TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8680        TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8687 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-8690        TCGA-BR-A44T        TCGA-BR-A452        TCGA-BR-A453 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-A4J6        TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-BR-A4QI        TCGA-BR-A4QL        TCGA-BR-A4QM        TCGA-CD-5798 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CD-5799        TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CD-5803        TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CD-8525        TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8529 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CD-8530        TCGA-CD-8531        TCGA-CD-8532        TCGA-CD-8534 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CD-8535        TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CD-A489        TCGA-CD-A48C        TCGA-CD-A4MH        TCGA-CD-A4MI 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CG-4437        TCGA-CG-4441        TCGA-CG-4449        TCGA-CG-5717 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5726 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CG-5727        TCGA-CG-5728        TCGA-CG-5730        TCGA-CG-5732 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-CG-5733        TCGA-CG-5734        TCGA-D7-5577        TCGA-D7-5578 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-D7-5579        TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822        TCGA-D7-8570 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-D7-8572        TCGA-D7-8574        TCGA-D7-8575        TCGA-D7-8576 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-D7-8578        TCGA-D7-8579        TCGA-D7-A4YT        TCGA-D7-A4YU 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-D7-A4YV        TCGA-D7-A4YY        TCGA-D7-A4Z0        TCGA-EQ-5647 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-EQ-8122        TCGA-F1-6177        TCGA-F1-6874        TCGA-F1-6875 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-F1-A448        TCGA-FP-7735        TCGA-FP-7829        TCGA-FP-7998 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-FP-8099        TCGA-FP-8209        TCGA-FP-8210        TCGA-FP-8211 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-FP-8631        TCGA-FP-A4BE        TCGA-HF-7132        TCGA-HF-7136 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-HU-8243        TCGA-HU-8602        TCGA-HU-8604        TCGA-HU-8608 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-HU-A4G3        TCGA-HU-A4G8        TCGA-HU-A4GC        TCGA-HU-A4GD 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GN        TCGA-HU-A4GQ 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-HU-A4GT        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H2 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4H6        TCGA-HU-A4H8 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" "C2ORF43 WILD-TYPE" 
       TCGA-IP-7968 
"C2ORF43 WILD-TYPE" 

Clustering(723) Variable = TMEM109 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM109 MUTATED        0      6      0      2      0
  TMEM109 WILD-TYPE     79    120     27     41     12
D723V1, multiclass
        clus
vv       TMEM109 MUTATED TMEM109 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               6               120
  CLUS_3               0                27
  CLUS_4               2                41
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM109 MUTATED        0      6      1      1
  TMEM109 WILD-TYPE     71     70     33     62
D723V2, multiclass
        clus
vv       TMEM109 MUTATED TMEM109 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               6                70
  CLUS_3               1                33
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM109 MUTATED        1      3      2      0      1
  TMEM109 WILD-TYPE     15     59     49     65     54
D723V3, multiclass
        clus
vv       TMEM109 MUTATED TMEM109 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               3                59
  CLUS_3               2                49
  CLUS_4               0                65
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM109 MUTATED        1      5      1      0
  TMEM109 WILD-TYPE     97     39     49     57
D723V4, multiclass
        clus
vv       TMEM109 MUTATED TMEM109 WILD-TYPE
  CLUS_1               1                97
  CLUS_2               5                39
  CLUS_3               1                49
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM109 MUTATED        6      0      0      2      0
  TMEM109 WILD-TYPE     56     59     40     35     59
D723V5, multiclass
        clus
vv       TMEM109 MUTATED TMEM109 WILD-TYPE
  CLUS_1               6                56
  CLUS_2               0                59
  CLUS_3               0                40
  CLUS_4               2                35
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM109 MUTATED        2      0      6
  TMEM109 WILD-TYPE    104     54     91
D723V6, multiclass
        clus
vv       TMEM109 MUTATED TMEM109 WILD-TYPE
  CLUS_1               2               104
  CLUS_2               0                54
  CLUS_3               6                91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM109 MUTATED        7      1      0
  TMEM109 WILD-TYPE    116     94     71
D723V7, multiclass
        clus
vv       TMEM109 MUTATED TMEM109 WILD-TYPE
  CLUS_1               7               116
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM109 MUTATED        8      0      0
  TMEM109 WILD-TYPE    149     63     69
D723V8, multiclass
        clus
vv       TMEM109 MUTATED TMEM109 WILD-TYPE
  CLUS_1               8               149
  CLUS_2               0                63
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM109 MUTATED        0      1      4      2      0      0
  TMEM109 WILD-TYPE     33     18     55     37     16     45
D723V9, multiclass
        clus
vv       TMEM109 MUTATED TMEM109 WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                18
  CLUS_3               4                55
  CLUS_4               2                37
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM109 MUTATED        2      0      4      0      1      0
  TMEM109 WILD-TYPE     45     39     31     32     22     35
D723V10, multiclass
        clus
vv       TMEM109 MUTATED TMEM109 WILD-TYPE
  CLUS_1               2                45
  CLUS_2               0                39
  CLUS_3               4                31
  CLUS_4               0                32
  CLUS_5               1                22
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(724) Variable = SRRT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRRT MUTATED        0     10      1      1      0
  SRRT WILD-TYPE     79    116     26     42     12
D724V1, multiclass
        clus
vv       SRRT MUTATED SRRT WILD-TYPE
  CLUS_1            0             79
  CLUS_2           10            116
  CLUS_3            1             26
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRRT MUTATED        1      7      0      2
  SRRT WILD-TYPE     70     69     34     61
D724V2, multiclass
        clus
vv       SRRT MUTATED SRRT WILD-TYPE
  CLUS_1            1             70
  CLUS_2            7             69
  CLUS_3            0             34
  CLUS_4            2             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRRT MUTATED        2      4      2      0      2
  SRRT WILD-TYPE     14     58     49     65     53
D724V3, multiclass
        clus
vv       SRRT MUTATED SRRT WILD-TYPE
  CLUS_1            2             14
  CLUS_2            4             58
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRRT MUTATED        3      3      3      1
  SRRT WILD-TYPE     95     41     47     56
D724V4, multiclass
        clus
vv       SRRT MUTATED SRRT WILD-TYPE
  CLUS_1            3             95
  CLUS_2            3             41
  CLUS_3            3             47
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRRT MUTATED        5      1      2      1      1
  SRRT WILD-TYPE     57     58     38     36     58
D724V5, multiclass
        clus
vv       SRRT MUTATED SRRT WILD-TYPE
  CLUS_1            5             57
  CLUS_2            1             58
  CLUS_3            2             38
  CLUS_4            1             36
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRRT MUTATED        3      1      6
  SRRT WILD-TYPE    103     53     91
D724V6, multiclass
        clus
vv       SRRT MUTATED SRRT WILD-TYPE
  CLUS_1            3            103
  CLUS_2            1             53
  CLUS_3            6             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRRT MUTATED        9      3      0
  SRRT WILD-TYPE    114     92     71
D724V7, multiclass
        clus
vv       SRRT MUTATED SRRT WILD-TYPE
  CLUS_1            9            114
  CLUS_2            3             92
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRRT MUTATED       10      1      1
  SRRT WILD-TYPE    147     62     68
D724V8, multiclass
        clus
vv       SRRT MUTATED SRRT WILD-TYPE
  CLUS_1           10            147
  CLUS_2            1             62
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SRRT MUTATED        0      2      4      2      1      1
  SRRT WILD-TYPE     33     17     55     37     15     44
D724V9, multiclass
        clus
vv       SRRT MUTATED SRRT WILD-TYPE
  CLUS_1            0             33
  CLUS_2            2             17
  CLUS_3            4             55
  CLUS_4            2             37
  CLUS_5            1             15
  CLUS_6            1             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SRRT MUTATED        3      1      4      0      1      1
  SRRT WILD-TYPE     44     38     31     32     22     34
D724V10, multiclass
        clus
vv       SRRT MUTATED SRRT WILD-TYPE
  CLUS_1            3             44
  CLUS_2            1             38
  CLUS_3            4             31
  CLUS_4            0             32
  CLUS_5            1             22
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(725) Variable = CASP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASP1 MUTATED        2      2      0      0      0
  CASP1 WILD-TYPE     77    124     27     43     12
D725V1, multiclass
        clus
vv       CASP1 MUTATED CASP1 WILD-TYPE
  CLUS_1             2              77
  CLUS_2             2             124
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP1 MUTATED        1      2      1      0
  CASP1 WILD-TYPE     70     74     33     63
D725V2, multiclass
        clus
vv       CASP1 MUTATED CASP1 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             2              74
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASP1 MUTATED        0      0      2      0      2
  CASP1 WILD-TYPE     16     62     49     65     53
D725V3, multiclass
        clus
vv       CASP1 MUTATED CASP1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             0              62
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP1 MUTATED        1      2      0      1
  CASP1 WILD-TYPE     97     42     50     56
D725V4, multiclass
        clus
vv       CASP1 MUTATED CASP1 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             2              42
  CLUS_3             0              50
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASP1 MUTATED        2      0      0      1      1
  CASP1 WILD-TYPE     60     59     40     36     58
D725V5, multiclass
        clus
vv       CASP1 MUTATED CASP1 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP1 MUTATED        2      0      2
  CASP1 WILD-TYPE    104     54     95
D725V6, multiclass
        clus
vv       CASP1 MUTATED CASP1 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             2              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP1 MUTATED        3      0      1
  CASP1 WILD-TYPE    120     95     70
D725V7, multiclass
        clus
vv       CASP1 MUTATED CASP1 WILD-TYPE
  CLUS_1             3             120
  CLUS_2             0              95
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP1 MUTATED        3      0      1
  CASP1 WILD-TYPE    154     63     68
D725V8, multiclass
        clus
vv       CASP1 MUTATED CASP1 WILD-TYPE
  CLUS_1             3             154
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CASP1 MUTATED        1      1      2      0      0      0
  CASP1 WILD-TYPE     32     18     57     39     16     45
D725V9, multiclass
        clus
vv       CASP1 MUTATED CASP1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             2              57
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CASP1 MUTATED        1      0      1      0      1      1
  CASP1 WILD-TYPE     46     39     34     32     22     34
D725V10, multiclass
        clus
vv       CASP1 MUTATED CASP1 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(726) Variable = NOL6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOL6 MUTATED        1     12      1      1      1
  NOL6 WILD-TYPE     78    114     26     42     11
D726V1, multiclass
        clus
vv       NOL6 MUTATED NOL6 WILD-TYPE
  CLUS_1            1             78
  CLUS_2           12            114
  CLUS_3            1             26
  CLUS_4            1             42
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOL6 MUTATED        0     12      1      1
  NOL6 WILD-TYPE     71     64     33     62
D726V2, multiclass
        clus
vv       NOL6 MUTATED NOL6 WILD-TYPE
  CLUS_1            0             71
  CLUS_2           12             64
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOL6 MUTATED        0      3      3      1      7
  NOL6 WILD-TYPE     16     59     48     64     48
D726V3, multiclass
        clus
vv       NOL6 MUTATED NOL6 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            3             59
  CLUS_3            3             48
  CLUS_4            1             64
  CLUS_5            7             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOL6 MUTATED        2      6      2      4
  NOL6 WILD-TYPE     96     38     48     53
D726V4, multiclass
        clus
vv       NOL6 MUTATED NOL6 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            6             38
  CLUS_3            2             48
  CLUS_4            4             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOL6 MUTATED        6      3      2      5      0
  NOL6 WILD-TYPE     56     56     38     32     59
D726V5, multiclass
        clus
vv       NOL6 MUTATED NOL6 WILD-TYPE
  CLUS_1            6             56
  CLUS_2            3             56
  CLUS_3            2             38
  CLUS_4            5             32
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOL6 MUTATED        2      2     12
  NOL6 WILD-TYPE    104     52     85
D726V6, multiclass
        clus
vv       NOL6 MUTATED NOL6 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            2             52
  CLUS_3           12             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOL6 MUTATED       14      2      1
  NOL6 WILD-TYPE    109     93     70
D726V7, multiclass
        clus
vv       NOL6 MUTATED NOL6 WILD-TYPE
  CLUS_1           14            109
  CLUS_2            2             93
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOL6 MUTATED       13      2      2
  NOL6 WILD-TYPE    144     61     67
D726V8, multiclass
        clus
vv       NOL6 MUTATED NOL6 WILD-TYPE
  CLUS_1           13            144
  CLUS_2            2             61
  CLUS_3            2             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NOL6 MUTATED        3      2      5      1      0      2
  NOL6 WILD-TYPE     30     17     54     38     16     43
D726V9, multiclass
        clus
vv       NOL6 MUTATED NOL6 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            2             17
  CLUS_3            5             54
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            2             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NOL6 MUTATED        4      2      3      3      1      0
  NOL6 WILD-TYPE     43     37     32     29     22     35
D726V10, multiclass
        clus
vv       NOL6 MUTATED NOL6 WILD-TYPE
  CLUS_1            4             43
  CLUS_2            2             37
  CLUS_3            3             32
  CLUS_4            3             29
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(727) Variable = AKR7A2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKR7A2 MUTATED        1      5      0      1      0
  AKR7A2 WILD-TYPE     78    121     27     42     12
D727V1, multiclass
        clus
vv       AKR7A2 MUTATED AKR7A2 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              5              121
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKR7A2 MUTATED        0      6      0      0
  AKR7A2 WILD-TYPE     71     70     34     63
D727V2, multiclass
        clus
vv       AKR7A2 MUTATED AKR7A2 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              6               70
  CLUS_3              0               34
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKR7A2 MUTATED        1      1      4      0      1
  AKR7A2 WILD-TYPE     15     61     47     65     54
D727V3, multiclass
        clus
vv       AKR7A2 MUTATED AKR7A2 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              1               61
  CLUS_3              4               47
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKR7A2 MUTATED        2      5      0      0
  AKR7A2 WILD-TYPE     96     39     50     57
D727V4, multiclass
        clus
vv       AKR7A2 MUTATED AKR7A2 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              5               39
  CLUS_3              0               50
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKR7A2 MUTATED        3      1      0      3      1
  AKR7A2 WILD-TYPE     59     58     40     34     58
D727V5, multiclass
        clus
vv       AKR7A2 MUTATED AKR7A2 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              3               34
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKR7A2 MUTATED        1      1      6
  AKR7A2 WILD-TYPE    105     53     91
D727V6, multiclass
        clus
vv       AKR7A2 MUTATED AKR7A2 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              1               53
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKR7A2 MUTATED        7      1      0
  AKR7A2 WILD-TYPE    116     94     71
D727V7, multiclass
        clus
vv       AKR7A2 MUTATED AKR7A2 WILD-TYPE
  CLUS_1              7              116
  CLUS_2              1               94
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKR7A2 MUTATED        6      1      1
  AKR7A2 WILD-TYPE    151     62     68
D727V8, multiclass
        clus
vv       AKR7A2 MUTATED AKR7A2 WILD-TYPE
  CLUS_1              6              151
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AKR7A2 MUTATED        2      0      1      1      0      1
  AKR7A2 WILD-TYPE     31     19     58     38     16     44
D727V9, multiclass
        clus
vv       AKR7A2 MUTATED AKR7A2 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               19
  CLUS_3              1               58
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AKR7A2 MUTATED        2      1      1      0      1      0
  AKR7A2 WILD-TYPE     45     38     34     32     22     35
D727V10, multiclass
        clus
vv       AKR7A2 MUTATED AKR7A2 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              1               38
  CLUS_3              1               34
  CLUS_4              0               32
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(728) Variable = TNKS1BP1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNKS1BP1 MUTATED        1     14      2      0      1
  TNKS1BP1 WILD-TYPE     78    112     25     43     11
D728V1, multiclass
        clus
vv       TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE
  CLUS_1                1                 78
  CLUS_2               14                112
  CLUS_3                2                 25
  CLUS_4                0                 43
  CLUS_5                1                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNKS1BP1 MUTATED        1     10      1      3
  TNKS1BP1 WILD-TYPE     70     66     33     60
D728V2, multiclass
        clus
vv       TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE
  CLUS_1                1                 70
  CLUS_2               10                 66
  CLUS_3                1                 33
  CLUS_4                3                 60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNKS1BP1 MUTATED        1      7      2      2      4
  TNKS1BP1 WILD-TYPE     15     55     49     63     51
D728V3, multiclass
        clus
vv       TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                7                 55
  CLUS_3                2                 49
  CLUS_4                2                 63
  CLUS_5                4                 51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNKS1BP1 MUTATED        3      6      6      1
  TNKS1BP1 WILD-TYPE     95     38     44     56
D728V4, multiclass
        clus
vv       TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE
  CLUS_1                3                 95
  CLUS_2                6                 38
  CLUS_3                6                 44
  CLUS_4                1                 56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNKS1BP1 MUTATED        8      0      4      3      1
  TNKS1BP1 WILD-TYPE     54     59     36     34     58
D728V5, multiclass
        clus
vv       TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE
  CLUS_1                8                 54
  CLUS_2                0                 59
  CLUS_3                4                 36
  CLUS_4                3                 34
  CLUS_5                1                 58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TNKS1BP1 MUTATED        5      1     10
  TNKS1BP1 WILD-TYPE    101     53     87
D728V6, multiclass
        clus
vv       TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE
  CLUS_1                5                101
  CLUS_2                1                 53
  CLUS_3               10                 87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TNKS1BP1 MUTATED       15      3      1
  TNKS1BP1 WILD-TYPE    108     92     70
D728V7, multiclass
        clus
vv       TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE
  CLUS_1               15                108
  CLUS_2                3                 92
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TNKS1BP1 MUTATED       14      2      3
  TNKS1BP1 WILD-TYPE    143     61     66
D728V8, multiclass
        clus
vv       TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE
  CLUS_1               14                143
  CLUS_2                2                 61
  CLUS_3                3                 66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNKS1BP1 MUTATED        3      2      4      4      0      1
  TNKS1BP1 WILD-TYPE     30     17     55     35     16     44
D728V9, multiclass
        clus
vv       TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE
  CLUS_1                3                 30
  CLUS_2                2                 17
  CLUS_3                4                 55
  CLUS_4                4                 35
  CLUS_5                0                 16
  CLUS_6                1                 44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNKS1BP1 MUTATED        4      0      4      0      4      2
  TNKS1BP1 WILD-TYPE     43     39     31     32     19     33
D728V10, multiclass
        clus
vv       TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE
  CLUS_1                4                 43
  CLUS_2                0                 39
  CLUS_3                4                 31
  CLUS_4                0                 32
  CLUS_5                4                 19
  CLUS_6                2                 33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(729) Variable = CALCRL MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CALCRL MUTATED        0      3      2      1      2
  CALCRL WILD-TYPE     79    123     25     42     10
D729V1, multiclass
        clus
vv       CALCRL MUTATED CALCRL WILD-TYPE
  CLUS_1              0               79
  CLUS_2              3              123
  CLUS_3              2               25
  CLUS_4              1               42
  CLUS_5              2               10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CALCRL MUTATED        1      3      1      0
  CALCRL WILD-TYPE     70     73     33     63
D729V2, multiclass
        clus
vv       CALCRL MUTATED CALCRL WILD-TYPE
  CLUS_1              1               70
  CLUS_2              3               73
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CALCRL MUTATED        0      4      0      0      4
  CALCRL WILD-TYPE     16     58     51     65     51
D729V3, multiclass
        clus
vv       CALCRL MUTATED CALCRL WILD-TYPE
  CLUS_1              0               16
  CLUS_2              4               58
  CLUS_3              0               51
  CLUS_4              0               65
  CLUS_5              4               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CALCRL MUTATED        1      5      0      2
  CALCRL WILD-TYPE     97     39     50     55
D729V4, multiclass
        clus
vv       CALCRL MUTATED CALCRL WILD-TYPE
  CLUS_1              1               97
  CLUS_2              5               39
  CLUS_3              0               50
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CALCRL MUTATED        4      1      1      1      0
  CALCRL WILD-TYPE     58     58     39     36     59
D729V5, multiclass
        clus
vv       CALCRL MUTATED CALCRL WILD-TYPE
  CLUS_1              4               58
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CALCRL MUTATED        3      2      2
  CALCRL WILD-TYPE    103     52     95
D729V6, multiclass
        clus
vv       CALCRL MUTATED CALCRL WILD-TYPE
  CLUS_1              3              103
  CLUS_2              2               52
  CLUS_3              2               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CALCRL MUTATED        6      2      0
  CALCRL WILD-TYPE    117     93     71
D729V7, multiclass
        clus
vv       CALCRL MUTATED CALCRL WILD-TYPE
  CLUS_1              6              117
  CLUS_2              2               93
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CALCRL MUTATED        6      2      0
  CALCRL WILD-TYPE    151     61     69
D729V8, multiclass
        clus
vv       CALCRL MUTATED CALCRL WILD-TYPE
  CLUS_1              6              151
  CLUS_2              2               61
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CALCRL MUTATED        0      0      2      1      0      2
  CALCRL WILD-TYPE     33     19     57     38     16     43
D729V9, multiclass
        clus
vv       CALCRL MUTATED CALCRL WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               19
  CLUS_3              2               57
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              2               43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CALCRL MUTATED        1      1      1      1      1      0
  CALCRL WILD-TYPE     46     38     34     31     22     35
D729V10, multiclass
        clus
vv       CALCRL MUTATED CALCRL WILD-TYPE
  CLUS_1              1               46
  CLUS_2              1               38
  CLUS_3              1               34
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(730) Variable = OSBPL2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSBPL2 MUTATED        3      4      0      0      0
  OSBPL2 WILD-TYPE     76    122     27     43     12
D730V1, multiclass
        clus
vv       OSBPL2 MUTATED OSBPL2 WILD-TYPE
  CLUS_1              3               76
  CLUS_2              4              122
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL2 MUTATED        2      1      1      0
  OSBPL2 WILD-TYPE     69     75     33     63
D730V2, multiclass
        clus
vv       OSBPL2 MUTATED OSBPL2 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              1               75
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSBPL2 MUTATED        0      6      0      0      1
  OSBPL2 WILD-TYPE     16     56     51     65     54
D730V3, multiclass
        clus
vv       OSBPL2 MUTATED OSBPL2 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              6               56
  CLUS_3              0               51
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL2 MUTATED        0      3      4      0
  OSBPL2 WILD-TYPE     98     41     46     57
D730V4, multiclass
        clus
vv       OSBPL2 MUTATED OSBPL2 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              3               41
  CLUS_3              4               46
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSBPL2 MUTATED        2      0      0      1      2
  OSBPL2 WILD-TYPE     60     59     40     36     57
D730V5, multiclass
        clus
vv       OSBPL2 MUTATED OSBPL2 WILD-TYPE
  CLUS_1              2               60
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              1               36
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OSBPL2 MUTATED        4      0      1
  OSBPL2 WILD-TYPE    102     54     96
D730V6, multiclass
        clus
vv       OSBPL2 MUTATED OSBPL2 WILD-TYPE
  CLUS_1              4              102
  CLUS_2              0               54
  CLUS_3              1               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OSBPL2 MUTATED        5      0      2
  OSBPL2 WILD-TYPE    118     95     69
D730V7, multiclass
        clus
vv       OSBPL2 MUTATED OSBPL2 WILD-TYPE
  CLUS_1              5              118
  CLUS_2              0               95
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OSBPL2 MUTATED        5      0      2
  OSBPL2 WILD-TYPE    152     63     67
D730V8, multiclass
        clus
vv       OSBPL2 MUTATED OSBPL2 WILD-TYPE
  CLUS_1              5              152
  CLUS_2              0               63
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OSBPL2 MUTATED        3      0      1      0      0      0
  OSBPL2 WILD-TYPE     30     19     58     39     16     45
D730V9, multiclass
        clus
vv       OSBPL2 MUTATED OSBPL2 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              0               19
  CLUS_3              1               58
  CLUS_4              0               39
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OSBPL2 MUTATED        2      0      1      0      0      1
  OSBPL2 WILD-TYPE     45     39     34     32     23     34
D730V10, multiclass
        clus
vv       OSBPL2 MUTATED OSBPL2 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              0               32
  CLUS_5              0               23
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(731) Variable = KLHL14 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLHL14 MUTATED        1     13      2      0      1
  KLHL14 WILD-TYPE     78    113     25     43     11
D731V1, multiclass
        clus
vv       KLHL14 MUTATED KLHL14 WILD-TYPE
  CLUS_1              1               78
  CLUS_2             13              113
  CLUS_3              2               25
  CLUS_4              0               43
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL14 MUTATED        1     10      2      1
  KLHL14 WILD-TYPE     70     66     32     62
D731V2, multiclass
        clus
vv       KLHL14 MUTATED KLHL14 WILD-TYPE
  CLUS_1              1               70
  CLUS_2             10               66
  CLUS_3              2               32
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLHL14 MUTATED        0      5      4      0      6
  KLHL14 WILD-TYPE     16     57     47     65     49
D731V3, multiclass
        clus
vv       KLHL14 MUTATED KLHL14 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              5               57
  CLUS_3              4               47
  CLUS_4              0               65
  CLUS_5              6               49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL14 MUTATED        4      7      3      1
  KLHL14 WILD-TYPE     94     37     47     56
D731V4, multiclass
        clus
vv       KLHL14 MUTATED KLHL14 WILD-TYPE
  CLUS_1              4               94
  CLUS_2              7               37
  CLUS_3              3               47
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLHL14 MUTATED       10      1      0      4      1
  KLHL14 WILD-TYPE     52     58     40     33     58
D731V5, multiclass
        clus
vv       KLHL14 MUTATED KLHL14 WILD-TYPE
  CLUS_1             10               52
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              4               33
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHL14 MUTATED        3      2     11
  KLHL14 WILD-TYPE    103     52     86
D731V6, multiclass
        clus
vv       KLHL14 MUTATED KLHL14 WILD-TYPE
  CLUS_1              3              103
  CLUS_2              2               52
  CLUS_3             11               86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHL14 MUTATED       12      3      2
  KLHL14 WILD-TYPE    111     92     69
D731V7, multiclass
        clus
vv       KLHL14 MUTATED KLHL14 WILD-TYPE
  CLUS_1             12              111
  CLUS_2              3               92
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHL14 MUTATED       14      2      1
  KLHL14 WILD-TYPE    143     61     68
D731V8, multiclass
        clus
vv       KLHL14 MUTATED KLHL14 WILD-TYPE
  CLUS_1             14              143
  CLUS_2              2               61
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KLHL14 MUTATED        2      1      5      4      0      2
  KLHL14 WILD-TYPE     31     18     54     35     16     43
D731V9, multiclass
        clus
vv       KLHL14 MUTATED KLHL14 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               18
  CLUS_3              5               54
  CLUS_4              4               35
  CLUS_5              0               16
  CLUS_6              2               43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KLHL14 MUTATED        5      2      2      1      3      1
  KLHL14 WILD-TYPE     42     37     33     31     20     34
D731V10, multiclass
        clus
vv       KLHL14 MUTATED KLHL14 WILD-TYPE
  CLUS_1              5               42
  CLUS_2              2               37
  CLUS_3              2               33
  CLUS_4              1               31
  CLUS_5              3               20
  CLUS_6              1               34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(732) Variable = USP28 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP28 MUTATED        2      9      2      0      0
  USP28 WILD-TYPE     77    117     25     43     12
D732V1, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             2              77
  CLUS_2             9             117
  CLUS_3             2              25
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP28 MUTATED        1      7      3      1
  USP28 WILD-TYPE     70     69     31     62
D732V2, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             7              69
  CLUS_3             3              31
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP28 MUTATED        2      3      3      1      4
  USP28 WILD-TYPE     14     59     48     64     51
D732V3, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             3              59
  CLUS_3             3              48
  CLUS_4             1              64
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP28 MUTATED        4      6      3      0
  USP28 WILD-TYPE     94     38     47     57
D732V4, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             4              94
  CLUS_2             6              38
  CLUS_3             3              47
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP28 MUTATED        4      1      0      5      2
  USP28 WILD-TYPE     58     58     40     32     57
D732V5, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             5              32
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP28 MUTATED        4      1      7
  USP28 WILD-TYPE    102     53     90
D732V6, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             1              53
  CLUS_3             7              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP28 MUTATED        9      3      1
  USP28 WILD-TYPE    114     92     70
D732V7, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             9             114
  CLUS_2             3              92
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP28 MUTATED       11      2      0
  USP28 WILD-TYPE    146     61     69
D732V8, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1            11             146
  CLUS_2             2              61
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  USP28 MUTATED        2      2      5      1      0      1
  USP28 WILD-TYPE     31     17     54     38     16     44
D732V9, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             2              17
  CLUS_3             5              54
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  USP28 MUTATED        4      1      4      1      1      0
  USP28 WILD-TYPE     43     38     31     31     22     35
D732V10, multiclass
        clus
vv       USP28 MUTATED USP28 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             1              38
  CLUS_3             4              31
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(733) Variable = C19ORF70 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF70 MUTATED        0      3      1      1      1
  C19ORF70 WILD-TYPE     79    123     26     42     11
D733V1, multiclass
        clus
vv       C19ORF70 MUTATED C19ORF70 WILD-TYPE
  CLUS_1                0                 79
  CLUS_2                3                123
  CLUS_3                1                 26
  CLUS_4                1                 42
  CLUS_5                1                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF70 MUTATED        0      5      0      0
  C19ORF70 WILD-TYPE     71     71     34     63
D733V2, multiclass
        clus
vv       C19ORF70 MUTATED C19ORF70 WILD-TYPE
  CLUS_1                0                 71
  CLUS_2                5                 71
  CLUS_3                0                 34
  CLUS_4                0                 63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF70 MUTATED        0      4      0      0      1
  C19ORF70 WILD-TYPE     16     58     51     65     54
D733V3, multiclass
        clus
vv       C19ORF70 MUTATED C19ORF70 WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                4                 58
  CLUS_3                0                 51
  CLUS_4                0                 65
  CLUS_5                1                 54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF70 MUTATED        1      3      1      0
  C19ORF70 WILD-TYPE     97     41     49     57
D733V4, multiclass
        clus
vv       C19ORF70 MUTATED C19ORF70 WILD-TYPE
  CLUS_1                1                 97
  CLUS_2                3                 41
  CLUS_3                1                 49
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF70 MUTATED        3      0      0      2      0
  C19ORF70 WILD-TYPE     59     59     40     35     59
D733V5, multiclass
        clus
vv       C19ORF70 MUTATED C19ORF70 WILD-TYPE
  CLUS_1                3                 59
  CLUS_2                0                 59
  CLUS_3                0                 40
  CLUS_4                2                 35
  CLUS_5                0                 59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF70 MUTATED        0      1      4
  C19ORF70 WILD-TYPE    106     53     93
D733V6, multiclass
        clus
vv       C19ORF70 MUTATED C19ORF70 WILD-TYPE
  CLUS_1                0                106
  CLUS_2                1                 53
  CLUS_3                4                 93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF70 MUTATED        5      1      0
  C19ORF70 WILD-TYPE    118     94     71
D733V7, multiclass
        clus
vv       C19ORF70 MUTATED C19ORF70 WILD-TYPE
  CLUS_1                5                118
  CLUS_2                1                 94
  CLUS_3                0                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF70 MUTATED        6      0      0
  C19ORF70 WILD-TYPE    151     63     69
D733V8, multiclass
        clus
vv       C19ORF70 MUTATED C19ORF70 WILD-TYPE
  CLUS_1                6                151
  CLUS_2                0                 63
  CLUS_3                0                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C19ORF70 MUTATED        0      2      1      2      0      0
  C19ORF70 WILD-TYPE     33     17     58     37     16     45
D733V9, multiclass
        clus
vv       C19ORF70 MUTATED C19ORF70 WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                2                 17
  CLUS_3                1                 58
  CLUS_4                2                 37
  CLUS_5                0                 16
  CLUS_6                0                 45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C19ORF70 MUTATED        4      0      0      0      1      0
  C19ORF70 WILD-TYPE     43     39     35     32     22     35
D733V10, multiclass
        clus
vv       C19ORF70 MUTATED C19ORF70 WILD-TYPE
  CLUS_1                4                 43
  CLUS_2                0                 39
  CLUS_3                0                 35
  CLUS_4                0                 32
  CLUS_5                1                 22
  CLUS_6                0                 35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(734) Variable = SLA MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLA MUTATED        0      4      0      0      0
  SLA WILD-TYPE     79    122     27     43     12
D734V1, multiclass
        clus
vv       SLA MUTATED SLA WILD-TYPE
  CLUS_1           0            79
  CLUS_2           4           122
  CLUS_3           0            27
  CLUS_4           0            43
  CLUS_5           0            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLA MUTATED        0      4      0      0
  SLA WILD-TYPE     71     72     34     63
D734V2, multiclass
        clus
vv       SLA MUTATED SLA WILD-TYPE
  CLUS_1           0            71
  CLUS_2           4            72
  CLUS_3           0            34
  CLUS_4           0            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLA MUTATED        0      0      1      0      1
  SLA WILD-TYPE     16     62     50     65     54
D734V3, multiclass
[1] "Remove cluster labels:" "SLA MUTATED"           
clus
  SLA MUTATED SLA WILD-TYPE 
            2           247 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-4183    TCGA-BR-4184    TCGA-BR-4187 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-4188    TCGA-BR-4191    TCGA-BR-4201    TCGA-BR-4253    TCGA-BR-4255 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-4256    TCGA-BR-4257    TCGA-BR-4267    TCGA-BR-4279    TCGA-BR-4280 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-4292    TCGA-BR-4294    TCGA-BR-4357    TCGA-BR-4361    TCGA-BR-4362 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-4363    TCGA-BR-4366    TCGA-BR-4368    TCGA-BR-4369    TCGA-BR-4370 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-4371    TCGA-BR-6453    TCGA-BR-6454    TCGA-BR-6455    TCGA-BR-6456 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-6457    TCGA-BR-6458    TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-6705    TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6710    TCGA-BR-6801 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-7703    TCGA-BR-7715    TCGA-BR-7716    TCGA-BR-7717    TCGA-BR-7722 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-7723    TCGA-BR-7851    TCGA-BR-7901    TCGA-BR-7957    TCGA-BR-7958 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-7959    TCGA-BR-8058    TCGA-BR-8059    TCGA-BR-8080    TCGA-BR-8081 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-8284    TCGA-BR-8286    TCGA-BR-8289    TCGA-BR-8291    TCGA-BR-8295 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-8296    TCGA-BR-8297    TCGA-BR-8360    TCGA-BR-8361    TCGA-BR-8363 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-8364    TCGA-BR-8365    TCGA-BR-8366    TCGA-BR-8367    TCGA-BR-8368 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-8369    TCGA-BR-8370    TCGA-BR-8371    TCGA-BR-8372    TCGA-BR-8380 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-8381    TCGA-BR-8382    TCGA-BR-8384    TCGA-BR-8483    TCGA-BR-8484 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-8485    TCGA-BR-8486    TCGA-BR-8588    TCGA-BR-8589    TCGA-BR-8590 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-8591    TCGA-BR-8592    TCGA-BR-8676    TCGA-BR-8677    TCGA-BR-8678 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-8679    TCGA-BR-8680    TCGA-BR-8682    TCGA-BR-8683    TCGA-BR-8686 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-8687    TCGA-BR-8690    TCGA-BR-A44T    TCGA-BR-A44U    TCGA-BR-A452 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-A453    TCGA-BR-A4CQ    TCGA-BR-A4CR    TCGA-BR-A4CS    TCGA-BR-A4IU 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-A4IV    TCGA-BR-A4IY    TCGA-BR-A4IZ    TCGA-BR-A4J1    TCGA-BR-A4J2 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-A4J4    TCGA-BR-A4J6    TCGA-BR-A4J7    TCGA-BR-A4J8    TCGA-BR-A4PD 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-A4PE    TCGA-BR-A4PF    TCGA-BR-A4QI    TCGA-BR-A4QL    TCGA-BR-A4QM 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CD-5798    TCGA-CD-5799    TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CD-5803    TCGA-CD-5804    TCGA-CD-5813    TCGA-CD-8524    TCGA-CD-8525 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CD-8526    TCGA-CD-8527    TCGA-CD-8528    TCGA-CD-8529    TCGA-CD-8530 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CD-8531    TCGA-CD-8532    TCGA-CD-8534    TCGA-CD-8535    TCGA-CD-8536 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CD-A486    TCGA-CD-A487    TCGA-CD-A489    TCGA-CD-A48A    TCGA-CD-A48C 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CD-A4MG    TCGA-CD-A4MH    TCGA-CD-A4MI    TCGA-CD-A4MJ    TCGA-CG-4300 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306    TCGA-CG-4436 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4442    TCGA-CG-4443    TCGA-CG-4444 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CG-4474    TCGA-CG-4475    TCGA-CG-4476    TCGA-CG-4477    TCGA-CG-5717 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CG-5718    TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5723 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CG-5724    TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728    TCGA-CG-5730 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577    TCGA-D7-5578 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520    TCGA-D7-6521 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6527    TCGA-D7-6528 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818    TCGA-D7-6820    TCGA-D7-6822 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-D7-8570    TCGA-D7-8572    TCGA-D7-8573    TCGA-D7-8574    TCGA-D7-8575 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-D7-8578    TCGA-D7-A4YT    TCGA-D7-A4YU    TCGA-D7-A4YV    TCGA-D7-A4YX 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-D7-A4YY    TCGA-D7-A4Z0    TCGA-EQ-8122    TCGA-EQ-A4SO    TCGA-F1-6177 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-F1-6874    TCGA-F1-6875    TCGA-F1-A448    TCGA-FP-7916    TCGA-FP-7998 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-HF-7132    TCGA-HF-7133    TCGA-HF-7136    TCGA-HJ-7597    TCGA-HU-8608 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-HU-8610    TCGA-HU-A4GF    TCGA-HU-A4GQ    TCGA-HU-A4GT    TCGA-HU-A4GU 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-HU-A4GX    TCGA-HU-A4GY    TCGA-HU-A4H2    TCGA-HU-A4H3    TCGA-HU-A4H4 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-HU-A4H5    TCGA-HU-A4HD    TCGA-IN-7806    TCGA-IN-7808    TCGA-IN-8462 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-IN-8663    TCGA-IP-7968 
"SLA WILD-TYPE" "SLA WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLA MUTATED        0      2      0      0
  SLA WILD-TYPE     98     42     50     57
D734V4, multiclass
[1] "Remove cluster labels:" "SLA MUTATED"           
clus
  SLA MUTATED SLA WILD-TYPE 
            2           247 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-BR-4183    TCGA-BR-4184    TCGA-BR-4187 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-4188    TCGA-BR-4191    TCGA-BR-4201    TCGA-BR-4253    TCGA-BR-4255 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-4256    TCGA-BR-4257    TCGA-BR-4267    TCGA-BR-4279    TCGA-BR-4280 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-4292    TCGA-BR-4294    TCGA-BR-4357    TCGA-BR-4361    TCGA-BR-4362 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-4363    TCGA-BR-4366    TCGA-BR-4368    TCGA-BR-4369    TCGA-BR-4370 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-4371    TCGA-BR-6453    TCGA-BR-6454    TCGA-BR-6455    TCGA-BR-6456 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-6457    TCGA-BR-6458    TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-6705    TCGA-BR-6706    TCGA-BR-6707    TCGA-BR-6710    TCGA-BR-6801 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-6802    TCGA-BR-6803    TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-7703    TCGA-BR-7715    TCGA-BR-7716    TCGA-BR-7717    TCGA-BR-7722 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-7723    TCGA-BR-7851    TCGA-BR-7901    TCGA-BR-7957    TCGA-BR-7958 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-7959    TCGA-BR-8058    TCGA-BR-8059    TCGA-BR-8080    TCGA-BR-8081 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-8284    TCGA-BR-8286    TCGA-BR-8289    TCGA-BR-8291    TCGA-BR-8295 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-8296    TCGA-BR-8297    TCGA-BR-8360    TCGA-BR-8361    TCGA-BR-8363 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-8364    TCGA-BR-8365    TCGA-BR-8366    TCGA-BR-8367    TCGA-BR-8368 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-8369    TCGA-BR-8370    TCGA-BR-8371    TCGA-BR-8372    TCGA-BR-8380 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-8381    TCGA-BR-8382    TCGA-BR-8384    TCGA-BR-8483    TCGA-BR-8484 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-8485    TCGA-BR-8486    TCGA-BR-8588    TCGA-BR-8589    TCGA-BR-8590 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-8591    TCGA-BR-8592    TCGA-BR-8676    TCGA-BR-8677    TCGA-BR-8678 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-8679    TCGA-BR-8680    TCGA-BR-8682    TCGA-BR-8683    TCGA-BR-8686 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-8687    TCGA-BR-8690    TCGA-BR-A44T    TCGA-BR-A44U    TCGA-BR-A452 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-A453    TCGA-BR-A4CQ    TCGA-BR-A4CR    TCGA-BR-A4CS    TCGA-BR-A4IU 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-A4IV    TCGA-BR-A4IY    TCGA-BR-A4IZ    TCGA-BR-A4J1    TCGA-BR-A4J2 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-A4J4    TCGA-BR-A4J6    TCGA-BR-A4J7    TCGA-BR-A4J8    TCGA-BR-A4PD 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-BR-A4PE    TCGA-BR-A4PF    TCGA-BR-A4QI    TCGA-BR-A4QL    TCGA-BR-A4QM 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CD-5798    TCGA-CD-5799    TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CD-5803    TCGA-CD-5804    TCGA-CD-5813    TCGA-CD-8524    TCGA-CD-8525 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CD-8526    TCGA-CD-8527    TCGA-CD-8528    TCGA-CD-8529    TCGA-CD-8530 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CD-8531    TCGA-CD-8532    TCGA-CD-8534    TCGA-CD-8535    TCGA-CD-8536 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CD-A486    TCGA-CD-A487    TCGA-CD-A489    TCGA-CD-A48A    TCGA-CD-A48C 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CD-A4MG    TCGA-CD-A4MH    TCGA-CD-A4MI    TCGA-CD-A4MJ    TCGA-CG-4300 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306    TCGA-CG-4436 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4442    TCGA-CG-4443    TCGA-CG-4444 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CG-4449    TCGA-CG-4455    TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CG-4474    TCGA-CG-4475    TCGA-CG-4476    TCGA-CG-4477    TCGA-CG-5717 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CG-5718    TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5723 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CG-5724    TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728    TCGA-CG-5730 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577    TCGA-D7-5578 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520    TCGA-D7-6521 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6527    TCGA-D7-6528 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818    TCGA-D7-6820    TCGA-D7-6822 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-D7-8570    TCGA-D7-8572    TCGA-D7-8573    TCGA-D7-8574    TCGA-D7-8575 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-D7-8578    TCGA-D7-A4YT    TCGA-D7-A4YU    TCGA-D7-A4YV    TCGA-D7-A4YX 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-D7-A4YY    TCGA-D7-A4Z0    TCGA-EQ-8122    TCGA-EQ-A4SO    TCGA-F1-6177 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-F1-6874    TCGA-F1-6875    TCGA-F1-A448    TCGA-FP-7916    TCGA-FP-7998 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-HF-7132    TCGA-HF-7133    TCGA-HF-7136    TCGA-HJ-7597    TCGA-HU-8608 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-HU-8610    TCGA-HU-A4GF    TCGA-HU-A4GQ    TCGA-HU-A4GT    TCGA-HU-A4GU 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-HU-A4GX    TCGA-HU-A4GY    TCGA-HU-A4H2    TCGA-HU-A4H3    TCGA-HU-A4H4 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-HU-A4H5    TCGA-HU-A4HD    TCGA-IN-7806    TCGA-IN-7808    TCGA-IN-8462 
"SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" "SLA WILD-TYPE" 
   TCGA-IN-8663    TCGA-IP-7968 
"SLA WILD-TYPE" "SLA WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLA MUTATED        4      0      0      0      0
  SLA WILD-TYPE     58     59     40     37     59
D734V5, multiclass
        clus
vv       SLA MUTATED SLA WILD-TYPE
  CLUS_1           4            58
  CLUS_2           0            59
  CLUS_3           0            40
  CLUS_4           0            37
  CLUS_5           0            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SLA MUTATED        0      0      4
  SLA WILD-TYPE    106     54     93
D734V6, multiclass
        clus
vv       SLA MUTATED SLA WILD-TYPE
  CLUS_1           0           106
  CLUS_2           0            54
  CLUS_3           4            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SLA MUTATED        3      0      1
  SLA WILD-TYPE    120     95     70
D734V7, multiclass
        clus
vv       SLA MUTATED SLA WILD-TYPE
  CLUS_1           3           120
  CLUS_2           0            95
  CLUS_3           1            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SLA MUTATED        4      0      0
  SLA WILD-TYPE    153     63     69
D734V8, multiclass
        clus
vv       SLA MUTATED SLA WILD-TYPE
  CLUS_1           4           153
  CLUS_2           0            63
  CLUS_3           0            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLA MUTATED        0      0      1      3      0      0
  SLA WILD-TYPE     33     19     58     36     16     45
D734V9, multiclass
        clus
vv       SLA MUTATED SLA WILD-TYPE
  CLUS_1           0            33
  CLUS_2           0            19
  CLUS_3           1            58
  CLUS_4           3            36
  CLUS_5           0            16
  CLUS_6           0            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLA MUTATED        2      0      1      1      0      0
  SLA WILD-TYPE     45     39     34     31     23     35
D734V10, multiclass
        clus
vv       SLA MUTATED SLA WILD-TYPE
  CLUS_1           2            45
  CLUS_2           0            39
  CLUS_3           1            34
  CLUS_4           1            31
  CLUS_5           0            23
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(735) Variable = FOXA3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXA3 MUTATED        0      5      1      0      1
  FOXA3 WILD-TYPE     79    121     26     43     11
D735V1, multiclass
        clus
vv       FOXA3 MUTATED FOXA3 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             5             121
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXA3 MUTATED        0      2      2      1
  FOXA3 WILD-TYPE     71     74     32     62
D735V2, multiclass
        clus
vv       FOXA3 MUTATED FOXA3 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             2              74
  CLUS_3             2              32
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXA3 MUTATED        0      2      3      0      1
  FOXA3 WILD-TYPE     16     60     48     65     54
D735V3, multiclass
        clus
vv       FOXA3 MUTATED FOXA3 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              60
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXA3 MUTATED        1      4      1      0
  FOXA3 WILD-TYPE     97     40     49     57
D735V4, multiclass
        clus
vv       FOXA3 MUTATED FOXA3 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             4              40
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXA3 MUTATED        4      0      1      1      0
  FOXA3 WILD-TYPE     58     59     39     36     59
D735V5, multiclass
        clus
vv       FOXA3 MUTATED FOXA3 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXA3 MUTATED        2      0      4
  FOXA3 WILD-TYPE    104     54     93
D735V6, multiclass
        clus
vv       FOXA3 MUTATED FOXA3 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXA3 MUTATED        6      1      0
  FOXA3 WILD-TYPE    117     94     71
D735V7, multiclass
        clus
vv       FOXA3 MUTATED FOXA3 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXA3 MUTATED        5      2      0
  FOXA3 WILD-TYPE    152     61     69
D735V8, multiclass
        clus
vv       FOXA3 MUTATED FOXA3 WILD-TYPE
  CLUS_1             5             152
  CLUS_2             2              61
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FOXA3 MUTATED        0      1      3      0      0      1
  FOXA3 WILD-TYPE     33     18     56     39     16     44
D735V9, multiclass
        clus
vv       FOXA3 MUTATED FOXA3 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              18
  CLUS_3             3              56
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FOXA3 MUTATED        1      1      3      0      0      0
  FOXA3 WILD-TYPE     46     38     32     32     23     35
D735V10, multiclass
        clus
vv       FOXA3 MUTATED FOXA3 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(736) Variable = CSNK1G1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSNK1G1 MUTATED        0      4      0      1      0
  CSNK1G1 WILD-TYPE     79    122     27     42     12
D736V1, multiclass
        clus
vv       CSNK1G1 MUTATED CSNK1G1 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               4               122
  CLUS_3               0                27
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1G1 MUTATED        0      4      0      0
  CSNK1G1 WILD-TYPE     71     72     34     63
D736V2, multiclass
        clus
vv       CSNK1G1 MUTATED CSNK1G1 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               4                72
  CLUS_3               0                34
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSNK1G1 MUTATED        0      1      1      0      2
  CSNK1G1 WILD-TYPE     16     61     50     65     53
D736V3, multiclass
        clus
vv       CSNK1G1 MUTATED CSNK1G1 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               1                61
  CLUS_3               1                50
  CLUS_4               0                65
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1G1 MUTATED        2      2      0      0
  CSNK1G1 WILD-TYPE     96     42     50     57
D736V4, multiclass
        clus
vv       CSNK1G1 MUTATED CSNK1G1 WILD-TYPE
  CLUS_1               2                96
  CLUS_2               2                42
  CLUS_3               0                50
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSNK1G1 MUTATED        4      0      2      0      0
  CSNK1G1 WILD-TYPE     58     59     38     37     59
D736V5, multiclass
        clus
vv       CSNK1G1 MUTATED CSNK1G1 WILD-TYPE
  CLUS_1               4                58
  CLUS_2               0                59
  CLUS_3               2                38
  CLUS_4               0                37
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CSNK1G1 MUTATED        1      0      5
  CSNK1G1 WILD-TYPE    105     54     92
D736V6, multiclass
        clus
vv       CSNK1G1 MUTATED CSNK1G1 WILD-TYPE
  CLUS_1               1               105
  CLUS_2               0                54
  CLUS_3               5                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CSNK1G1 MUTATED        6      0      0
  CSNK1G1 WILD-TYPE    117     95     71
D736V7, multiclass
        clus
vv       CSNK1G1 MUTATED CSNK1G1 WILD-TYPE
  CLUS_1               6               117
  CLUS_2               0                95
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CSNK1G1 MUTATED        5      0      1
  CSNK1G1 WILD-TYPE    152     63     68
D736V8, multiclass
        clus
vv       CSNK1G1 MUTATED CSNK1G1 WILD-TYPE
  CLUS_1               5               152
  CLUS_2               0                63
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CSNK1G1 MUTATED        2      0      0      2      0      0
  CSNK1G1 WILD-TYPE     31     19     59     37     16     45
D736V9, multiclass
        clus
vv       CSNK1G1 MUTATED CSNK1G1 WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                19
  CLUS_3               0                59
  CLUS_4               2                37
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CSNK1G1 MUTATED        4      0      0      0      0      0
  CSNK1G1 WILD-TYPE     43     39     35     32     23     35
D736V10, multiclass
        clus
vv       CSNK1G1 MUTATED CSNK1G1 WILD-TYPE
  CLUS_1               4                43
  CLUS_2               0                39
  CLUS_3               0                35
  CLUS_4               0                32
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(737) Variable = SLC7A13 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC7A13 MUTATED        0      9      0      0      0
  SLC7A13 WILD-TYPE     79    117     27     43     12
D737V1, multiclass
        clus
vv       SLC7A13 MUTATED SLC7A13 WILD-TYPE
  CLUS_1               0                79
  CLUS_2               9               117
  CLUS_3               0                27
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC7A13 MUTATED        0      6      2      0
  SLC7A13 WILD-TYPE     71     70     32     63
D737V2, multiclass
        clus
vv       SLC7A13 MUTATED SLC7A13 WILD-TYPE
  CLUS_1               0                71
  CLUS_2               6                70
  CLUS_3               2                32
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC7A13 MUTATED        0      1      4      0      1
  SLC7A13 WILD-TYPE     16     61     47     65     54
D737V3, multiclass
        clus
vv       SLC7A13 MUTATED SLC7A13 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               1                61
  CLUS_3               4                47
  CLUS_4               0                65
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC7A13 MUTATED        2      4      0      0
  SLC7A13 WILD-TYPE     96     40     50     57
D737V4, multiclass
        clus
vv       SLC7A13 MUTATED SLC7A13 WILD-TYPE
  CLUS_1               2                96
  CLUS_2               4                40
  CLUS_3               0                50
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC7A13 MUTATED        6      1      1      1      0
  SLC7A13 WILD-TYPE     56     58     39     36     59
D737V5, multiclass
        clus
vv       SLC7A13 MUTATED SLC7A13 WILD-TYPE
  CLUS_1               6                56
  CLUS_2               1                58
  CLUS_3               1                39
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC7A13 MUTATED        2      1      6
  SLC7A13 WILD-TYPE    104     53     91
D737V6, multiclass
        clus
vv       SLC7A13 MUTATED SLC7A13 WILD-TYPE
  CLUS_1               2               104
  CLUS_2               1                53
  CLUS_3               6                91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC7A13 MUTATED        8      1      0
  SLC7A13 WILD-TYPE    115     94     71
D737V7, multiclass
        clus
vv       SLC7A13 MUTATED SLC7A13 WILD-TYPE
  CLUS_1               8               115
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC7A13 MUTATED        8      1      0
  SLC7A13 WILD-TYPE    149     62     69
D737V8, multiclass
        clus
vv       SLC7A13 MUTATED SLC7A13 WILD-TYPE
  CLUS_1               8               149
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC7A13 MUTATED        1      2      2      1      0      1
  SLC7A13 WILD-TYPE     32     17     57     38     16     44
D737V9, multiclass
        clus
vv       SLC7A13 MUTATED SLC7A13 WILD-TYPE
  CLUS_1               1                32
  CLUS_2               2                17
  CLUS_3               2                57
  CLUS_4               1                38
  CLUS_5               0                16
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC7A13 MUTATED        3      1      2      0      1      0
  SLC7A13 WILD-TYPE     44     38     33     32     22     35
D737V10, multiclass
        clus
vv       SLC7A13 MUTATED SLC7A13 WILD-TYPE
  CLUS_1               3                44
  CLUS_2               1                38
  CLUS_3               2                33
  CLUS_4               0                32
  CLUS_5               1                22
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(738) Variable = SPAG17 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPAG17 MUTATED        3     14      1      3      0
  SPAG17 WILD-TYPE     76    112     26     40     12
D738V1, multiclass
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  CLUS_1              3               76
  CLUS_2             14              112
  CLUS_3              1               26
  CLUS_4              3               40
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAG17 MUTATED        2     12      3      2
  SPAG17 WILD-TYPE     69     64     31     61
D738V2, multiclass
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  CLUS_1              2               69
  CLUS_2             12               64
  CLUS_3              3               31
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPAG17 MUTATED        3      5      4      3      5
  SPAG17 WILD-TYPE     13     57     47     62     50
D738V3, multiclass
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  CLUS_1              3               13
  CLUS_2              5               57
  CLUS_3              4               47
  CLUS_4              3               62
  CLUS_5              5               50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPAG17 MUTATED        6     10      2      2
  SPAG17 WILD-TYPE     92     34     48     55
D738V4, multiclass
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  CLUS_1              6               92
  CLUS_2             10               34
  CLUS_3              2               48
  CLUS_4              2               55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPAG17 MUTATED       10      0      2      4      4
  SPAG17 WILD-TYPE     52     59     38     33     55
D738V5, multiclass
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  CLUS_1             10               52
  CLUS_2              0               59
  CLUS_3              2               38
  CLUS_4              4               33
  CLUS_5              4               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPAG17 MUTATED        8      0     12
  SPAG17 WILD-TYPE     98     54     85
D738V6, multiclass
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  CLUS_1              8               98
  CLUS_2              0               54
  CLUS_3             12               85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPAG17 MUTATED       17      0      5
  SPAG17 WILD-TYPE    106     95     66
D738V7, multiclass
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  CLUS_1             17              106
  CLUS_2              0               95
  CLUS_3              5               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPAG17 MUTATED       20      0      2
  SPAG17 WILD-TYPE    137     63     67
D738V8, multiclass
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  CLUS_1             20              137
  CLUS_2              0               63
  CLUS_3              2               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPAG17 MUTATED        5      2      7      2      1      0
  SPAG17 WILD-TYPE     28     17     52     37     15     45
D738V9, multiclass
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  CLUS_1              5               28
  CLUS_2              2               17
  CLUS_3              7               52
  CLUS_4              2               37
  CLUS_5              1               15
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPAG17 MUTATED        7      0      6      2      0      2
  SPAG17 WILD-TYPE     40     39     29     30     23     33
D738V10, multiclass
        clus
vv       SPAG17 MUTATED SPAG17 WILD-TYPE
  CLUS_1              7               40
  CLUS_2              0               39
  CLUS_3              6               29
  CLUS_4              2               30
  CLUS_5              0               23
  CLUS_6              2               33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(739) Variable = PDS5B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDS5B MUTATED        0      8      2      3      1
  PDS5B WILD-TYPE     79    118     25     40     11
D739V1, multiclass
        clus
vv       PDS5B MUTATED PDS5B WILD-TYPE
  CLUS_1             0              79
  CLUS_2             8             118
  CLUS_3             2              25
  CLUS_4             3              40
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDS5B MUTATED        0      8      2      1
  PDS5B WILD-TYPE     71     68     32     62
D739V2, multiclass
        clus
vv       PDS5B MUTATED PDS5B WILD-TYPE
  CLUS_1             0              71
  CLUS_2             8              68
  CLUS_3             2              32
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDS5B MUTATED        0      3      4      2      3
  PDS5B WILD-TYPE     16     59     47     63     52
D739V3, multiclass
        clus
vv       PDS5B MUTATED PDS5B WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              59
  CLUS_3             4              47
  CLUS_4             2              63
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDS5B MUTATED        0      9      1      2
  PDS5B WILD-TYPE     98     35     49     55
D739V4, multiclass
        clus
vv       PDS5B MUTATED PDS5B WILD-TYPE
  CLUS_1             0              98
  CLUS_2             9              35
  CLUS_3             1              49
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDS5B MUTATED        5      2      3      2      0
  PDS5B WILD-TYPE     57     57     37     35     59
D739V5, multiclass
        clus
vv       PDS5B MUTATED PDS5B WILD-TYPE
  CLUS_1             5              57
  CLUS_2             2              57
  CLUS_3             3              37
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDS5B MUTATED        3      1      8
  PDS5B WILD-TYPE    103     53     89
D739V6, multiclass
        clus
vv       PDS5B MUTATED PDS5B WILD-TYPE
  CLUS_1             3             103
  CLUS_2             1              53
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDS5B MUTATED       11      2      1
  PDS5B WILD-TYPE    112     93     70
D739V7, multiclass
        clus
vv       PDS5B MUTATED PDS5B WILD-TYPE
  CLUS_1            11             112
  CLUS_2             2              93
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDS5B MUTATED       11      3      0
  PDS5B WILD-TYPE    146     60     69
D739V8, multiclass
        clus
vv       PDS5B MUTATED PDS5B WILD-TYPE
  CLUS_1            11             146
  CLUS_2             3              60
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PDS5B MUTATED        1      2      4      1      0      1
  PDS5B WILD-TYPE     32     17     55     38     16     44
D739V9, multiclass
        clus
vv       PDS5B MUTATED PDS5B WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              17
  CLUS_3             4              55
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PDS5B MUTATED        3      1      2      3      0      0
  PDS5B WILD-TYPE     44     38     33     29     23     35
D739V10, multiclass
        clus
vv       PDS5B MUTATED PDS5B WILD-TYPE
  CLUS_1             3              44
  CLUS_2             1              38
  CLUS_3             2              33
  CLUS_4             3              29
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(740) Variable = TAC4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAC4 MUTATED        0      2      0      1      0
  TAC4 WILD-TYPE     79    124     27     42     12
D740V1, multiclass
        clus
vv       TAC4 MUTATED TAC4 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            2            124
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAC4 MUTATED        0      2      0      1
  TAC4 WILD-TYPE     71     74     34     62
D740V2, multiclass
        clus
vv       TAC4 MUTATED TAC4 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            2             74
  CLUS_3            0             34
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAC4 MUTATED        0      1      1      0      0
  TAC4 WILD-TYPE     16     61     50     65     55
D740V3, multiclass
[1] "Remove cluster labels:" "TAC4 MUTATED"          
clus
  TAC4 MUTATED TAC4 WILD-TYPE 
             2            247 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-4187     TCGA-BR-4188     TCGA-BR-4191     TCGA-BR-4201 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-4253     TCGA-BR-4255     TCGA-BR-4256     TCGA-BR-4257 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280     TCGA-BR-4292 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-4294     TCGA-BR-4357     TCGA-BR-4361     TCGA-BR-4362 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-4363     TCGA-BR-4366     TCGA-BR-4368     TCGA-BR-4369 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-4370     TCGA-BR-4371     TCGA-BR-6452     TCGA-BR-6453 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6710 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7715 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-7959     TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8080 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8081     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8297 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8360     TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8369     TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8380     TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8483     TCGA-BR-8484     TCGA-BR-8485     TCGA-BR-8486 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8588     TCGA-BR-8589     TCGA-BR-8590     TCGA-BR-8591 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677     TCGA-BR-8678 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682     TCGA-BR-8683 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8686     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-A44U     TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-A4CR     TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J2 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-A4J4     TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-A4PD     TCGA-BR-A4PE     TCGA-BR-A4PF     TCGA-BR-A4QI 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-5804     TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-8526     TCGA-CD-8527     TCGA-CD-8528     TCGA-CD-8529 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8534 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-A489     TCGA-CD-A48A     TCGA-CD-A48C     TCGA-CD-A4MG 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4442 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469     TCGA-CG-4474 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-4475     TCGA-CG-4476     TCGA-CG-4477     TCGA-CG-5717 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6527     TCGA-D7-6528 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572     TCGA-D7-8573 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8578     TCGA-D7-A4YT 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4YX     TCGA-D7-A4YY 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-A4Z0     TCGA-EQ-8122     TCGA-EQ-A4SO     TCGA-F1-6177 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-F1-6874     TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7916 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-FP-7998     TCGA-HF-7132     TCGA-HF-7133     TCGA-HF-7136 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-HJ-7597     TCGA-HU-8602     TCGA-HU-8608     TCGA-HU-8610 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-HU-A4GF     TCGA-HU-A4GQ     TCGA-HU-A4GT     TCGA-HU-A4GX 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-HU-A4GY     TCGA-HU-A4H2     TCGA-HU-A4H3     TCGA-HU-A4H4 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-HU-A4H5     TCGA-HU-A4HD     TCGA-IN-7806     TCGA-IN-7808 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-IN-8462     TCGA-IN-8663     TCGA-IP-7968 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAC4 MUTATED        0      1      1      0
  TAC4 WILD-TYPE     98     43     49     57
D740V4, multiclass
[1] "Remove cluster labels:" "TAC4 MUTATED"          
clus
  TAC4 MUTATED TAC4 WILD-TYPE 
             2            247 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-4183     TCGA-BR-4184 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-4187     TCGA-BR-4188     TCGA-BR-4191     TCGA-BR-4201 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-4253     TCGA-BR-4255     TCGA-BR-4256     TCGA-BR-4257 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280     TCGA-BR-4292 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-4294     TCGA-BR-4357     TCGA-BR-4361     TCGA-BR-4362 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-4363     TCGA-BR-4366     TCGA-BR-4368     TCGA-BR-4369 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-4370     TCGA-BR-4371     TCGA-BR-6452     TCGA-BR-6453 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6710 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7715 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-7959     TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8080 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8081     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8297 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8360     TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8369     TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8380     TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8483     TCGA-BR-8484     TCGA-BR-8485     TCGA-BR-8486 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8588     TCGA-BR-8589     TCGA-BR-8590     TCGA-BR-8591 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677     TCGA-BR-8678 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682     TCGA-BR-8683 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8686     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-A44U     TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-A4CR     TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J2 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-A4J4     TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-A4PD     TCGA-BR-A4PE     TCGA-BR-A4PF     TCGA-BR-A4QI 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-5804     TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-8526     TCGA-CD-8527     TCGA-CD-8528     TCGA-CD-8529 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8534 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-A489     TCGA-CD-A48A     TCGA-CD-A48C     TCGA-CD-A4MG 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4442 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469     TCGA-CG-4474 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-4475     TCGA-CG-4476     TCGA-CG-4477     TCGA-CG-5717 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6527     TCGA-D7-6528 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572     TCGA-D7-8573 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8578     TCGA-D7-A4YT 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4YX     TCGA-D7-A4YY 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-A4Z0     TCGA-EQ-8122     TCGA-EQ-A4SO     TCGA-F1-6177 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-F1-6874     TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7916 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-FP-7998     TCGA-HF-7132     TCGA-HF-7133     TCGA-HF-7136 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-HJ-7597     TCGA-HU-8602     TCGA-HU-8608     TCGA-HU-8610 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-HU-A4GF     TCGA-HU-A4GQ     TCGA-HU-A4GT     TCGA-HU-A4GX 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-HU-A4GY     TCGA-HU-A4H2     TCGA-HU-A4H3     TCGA-HU-A4H4 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-HU-A4H5     TCGA-HU-A4HD     TCGA-IN-7806     TCGA-IN-7808 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-IN-8462     TCGA-IN-8663     TCGA-IP-7968 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAC4 MUTATED        2      0      0      1      0
  TAC4 WILD-TYPE     60     59     40     36     59
D740V5, multiclass
        clus
vv       TAC4 MUTATED TAC4 WILD-TYPE
  CLUS_1            2             60
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAC4 MUTATED        1      0      2
  TAC4 WILD-TYPE    105     54     95
D740V6, multiclass
        clus
vv       TAC4 MUTATED TAC4 WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            2             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAC4 MUTATED        3      0      0
  TAC4 WILD-TYPE    120     95     71
D740V7, multiclass
        clus
vv       TAC4 MUTATED TAC4 WILD-TYPE
  CLUS_1            3            120
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAC4 MUTATED        2      1      0
  TAC4 WILD-TYPE    155     62     69
D740V8, multiclass
        clus
vv       TAC4 MUTATED TAC4 WILD-TYPE
  CLUS_1            2            155
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAC4 MUTATED        0      0      1      1      0      0
  TAC4 WILD-TYPE     33     19     58     38     16     45
D740V9, multiclass
[1] "Remove cluster labels:" "TAC4 MUTATED"          
clus
  TAC4 MUTATED TAC4 WILD-TYPE 
             2            209 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6453 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-7715     TCGA-BR-7717     TCGA-BR-7723     TCGA-BR-7851 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8077     TCGA-BR-8078 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8297 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8360     TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373     TCGA-BR-8380 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8677     TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8682     TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-A44T     TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-A4CR     TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J6 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-5804     TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-8526     TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8534     TCGA-CD-8535 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-A48C     TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-4437     TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5717 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-8572     TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YY     TCGA-D7-A4Z0     TCGA-EQ-5647 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829     TCGA-FP-7998 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-FP-8631     TCGA-FP-A4BE     TCGA-HF-7132     TCGA-HF-7136 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604     TCGA-HU-8608 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC     TCGA-HU-A4GD 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GN     TCGA-HU-A4GQ 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-HU-A4GT     TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H2 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6     TCGA-HU-A4H8 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-IP-7968 
"TAC4 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAC4 MUTATED        0      0      1      1      0      0
  TAC4 WILD-TYPE     47     39     34     31     23     35
D740V10, multiclass
[1] "Remove cluster labels:" "TAC4 MUTATED"          
clus
  TAC4 MUTATED TAC4 WILD-TYPE 
             2            209 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-BR-6452     TCGA-BR-6453 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-7715     TCGA-BR-7717     TCGA-BR-7723     TCGA-BR-7851 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8077     TCGA-BR-8078 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8296     TCGA-BR-8297 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8360     TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8365     TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373     TCGA-BR-8380 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8677     TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-8682     TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-A44T     TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-A4CR     TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J6 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-5804     TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-8526     TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8534     TCGA-CD-8535 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CD-A48C     TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-4437     TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5717 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5724     TCGA-CG-5726     TCGA-CG-5727 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-8572     TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YY     TCGA-D7-A4Z0     TCGA-EQ-5647 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829     TCGA-FP-7998 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-FP-8631     TCGA-FP-A4BE     TCGA-HF-7132     TCGA-HF-7136 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604     TCGA-HU-8608 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC     TCGA-HU-A4GD 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GN     TCGA-HU-A4GQ 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-HU-A4GT     TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H2 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6     TCGA-HU-A4H8 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" "TAC4 WILD-TYPE" 
    TCGA-IP-7968 
"TAC4 WILD-TYPE" 

Clustering(741) Variable = PFAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PFAS MUTATED        1      7      0      0      1
  PFAS WILD-TYPE     78    119     27     43     11
D741V1, multiclass
        clus
vv       PFAS MUTATED PFAS WILD-TYPE
  CLUS_1            1             78
  CLUS_2            7            119
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PFAS MUTATED        1      5      1      1
  PFAS WILD-TYPE     70     71     33     62
D741V2, multiclass
        clus
vv       PFAS MUTATED PFAS WILD-TYPE
  CLUS_1            1             70
  CLUS_2            5             71
  CLUS_3            1             33
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PFAS MUTATED        1      1      2      0      4
  PFAS WILD-TYPE     15     61     49     65     51
D741V3, multiclass
        clus
vv       PFAS MUTATED PFAS WILD-TYPE
  CLUS_1            1             15
  CLUS_2            1             61
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            4             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PFAS MUTATED        3      3      1      1
  PFAS WILD-TYPE     95     41     49     56
D741V4, multiclass
        clus
vv       PFAS MUTATED PFAS WILD-TYPE
  CLUS_1            3             95
  CLUS_2            3             41
  CLUS_3            1             49
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PFAS MUTATED        5      1      0      0      1
  PFAS WILD-TYPE     57     58     40     37     58
D741V5, multiclass
        clus
vv       PFAS MUTATED PFAS WILD-TYPE
  CLUS_1            5             57
  CLUS_2            1             58
  CLUS_3            0             40
  CLUS_4            0             37
  CLUS_5            1             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PFAS MUTATED        2      1      4
  PFAS WILD-TYPE    104     53     93
D741V6, multiclass
        clus
vv       PFAS MUTATED PFAS WILD-TYPE
  CLUS_1            2            104
  CLUS_2            1             53
  CLUS_3            4             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PFAS MUTATED        6      2      1
  PFAS WILD-TYPE    117     93     70
D741V7, multiclass
        clus
vv       PFAS MUTATED PFAS WILD-TYPE
  CLUS_1            6            117
  CLUS_2            2             93
  CLUS_3            1             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PFAS MUTATED        7      1      1
  PFAS WILD-TYPE    150     62     68
D741V8, multiclass
        clus
vv       PFAS MUTATED PFAS WILD-TYPE
  CLUS_1            7            150
  CLUS_2            1             62
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PFAS MUTATED        1      0      3      2      0      2
  PFAS WILD-TYPE     32     19     56     37     16     43
D741V9, multiclass
        clus
vv       PFAS MUTATED PFAS WILD-TYPE
  CLUS_1            1             32
  CLUS_2            0             19
  CLUS_3            3             56
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            2             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PFAS MUTATED        2      1      3      0      1      1
  PFAS WILD-TYPE     45     38     32     32     22     34
D741V10, multiclass
        clus
vv       PFAS MUTATED PFAS WILD-TYPE
  CLUS_1            2             45
  CLUS_2            1             38
  CLUS_3            3             32
  CLUS_4            0             32
  CLUS_5            1             22
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(742) Variable = ITGAV MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGAV MUTATED        5      6      0      1      1
  ITGAV WILD-TYPE     74    120     27     42     11
D742V1, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             5              74
  CLUS_2             6             120
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGAV MUTATED        5      5      1      0
  ITGAV WILD-TYPE     66     71     33     63
D742V2, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             5              66
  CLUS_2             5              71
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGAV MUTATED        1      2      0      4      2
  ITGAV WILD-TYPE     15     60     51     61     53
D742V3, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              60
  CLUS_3             0              51
  CLUS_4             4              61
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGAV MUTATED        3      2      1      3
  ITGAV WILD-TYPE     95     42     49     54
D742V4, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             3              95
  CLUS_2             2              42
  CLUS_3             1              49
  CLUS_4             3              54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGAV MUTATED        4      1      1      2      3
  ITGAV WILD-TYPE     58     58     39     35     56
D742V5, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             4              58
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             2              35
  CLUS_5             3              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGAV MUTATED        3      0      8
  ITGAV WILD-TYPE    103     54     89
D742V6, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGAV MUTATED        8      1      4
  ITGAV WILD-TYPE    115     94     67
D742V7, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             8             115
  CLUS_2             1              94
  CLUS_3             4              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGAV MUTATED       10      0      3
  ITGAV WILD-TYPE    147     63     66
D742V8, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1            10             147
  CLUS_2             0              63
  CLUS_3             3              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ITGAV MUTATED        3      1      1      3      1      0
  ITGAV WILD-TYPE     30     18     58     36     15     45
D742V9, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             3              30
  CLUS_2             1              18
  CLUS_3             1              58
  CLUS_4             3              36
  CLUS_5             1              15
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ITGAV MUTATED        6      0      1      0      1      1
  ITGAV WILD-TYPE     41     39     34     32     22     34
D742V10, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             6              41
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(743) Variable = FBXO32 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO32 MUTATED        0      6      0      1      0
  FBXO32 WILD-TYPE     79    120     27     42     12
D743V1, multiclass
        clus
vv       FBXO32 MUTATED FBXO32 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              6              120
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO32 MUTATED        0      5      1      0
  FBXO32 WILD-TYPE     71     71     33     63
D743V2, multiclass
        clus
vv       FBXO32 MUTATED FBXO32 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              5               71
  CLUS_3              1               33
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO32 MUTATED        0      2      2      0      2
  FBXO32 WILD-TYPE     16     60     49     65     53
D743V3, multiclass
        clus
vv       FBXO32 MUTATED FBXO32 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              2               60
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO32 MUTATED        0      5      1      0
  FBXO32 WILD-TYPE     98     39     49     57
D743V4, multiclass
        clus
vv       FBXO32 MUTATED FBXO32 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              5               39
  CLUS_3              1               49
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO32 MUTATED        4      0      0      3      0
  FBXO32 WILD-TYPE     58     59     40     34     59
D743V5, multiclass
        clus
vv       FBXO32 MUTATED FBXO32 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              3               34
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO32 MUTATED        0      0      7
  FBXO32 WILD-TYPE    106     54     90
D743V6, multiclass
        clus
vv       FBXO32 MUTATED FBXO32 WILD-TYPE
  CLUS_1              0              106
  CLUS_2              0               54
  CLUS_3              7               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO32 MUTATED        7      0      0
  FBXO32 WILD-TYPE    116     95     71
D743V7, multiclass
        clus
vv       FBXO32 MUTATED FBXO32 WILD-TYPE
  CLUS_1              7              116
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO32 MUTATED        7      0      0
  FBXO32 WILD-TYPE    150     63     69
D743V8, multiclass
        clus
vv       FBXO32 MUTATED FBXO32 WILD-TYPE
  CLUS_1              7              150
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBXO32 MUTATED        2      0      2      1      0      0
  FBXO32 WILD-TYPE     31     19     57     38     16     45
D743V9, multiclass
        clus
vv       FBXO32 MUTATED FBXO32 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               19
  CLUS_3              2               57
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBXO32 MUTATED        2      0      2      1      0      0
  FBXO32 WILD-TYPE     45     39     33     31     23     35
D743V10, multiclass
        clus
vv       FBXO32 MUTATED FBXO32 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(744) Variable = CHST9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHST9 MUTATED        0      5      0      1      0
  CHST9 WILD-TYPE     79    121     27     42     12
D744V1, multiclass
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             5             121
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHST9 MUTATED        0      2      1      0
  CHST9 WILD-TYPE     71     74     33     63
D744V2, multiclass
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             2              74
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHST9 MUTATED        0      1      2      1      2
  CHST9 WILD-TYPE     16     61     49     64     53
D744V3, multiclass
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              61
  CLUS_3             2              49
  CLUS_4             1              64
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHST9 MUTATED        0      3      0      3
  CHST9 WILD-TYPE     98     41     50     54
D744V4, multiclass
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             3              41
  CLUS_3             0              50
  CLUS_4             3              54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHST9 MUTATED        2      2      1      0      0
  CHST9 WILD-TYPE     60     57     39     37     59
D744V5, multiclass
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             2              57
  CLUS_3             1              39
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHST9 MUTATED        2      1      2
  CHST9 WILD-TYPE    104     53     95
D744V6, multiclass
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              53
  CLUS_3             2              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHST9 MUTATED        4      1      1
  CHST9 WILD-TYPE    119     94     70
D744V7, multiclass
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  CLUS_1             4             119
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHST9 MUTATED        5      0      1
  CHST9 WILD-TYPE    152     63     68
D744V8, multiclass
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  CLUS_1             5             152
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CHST9 MUTATED        1      1      0      1      0      0
  CHST9 WILD-TYPE     32     18     59     38     16     45
D744V9, multiclass
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             0              59
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CHST9 MUTATED        0      0      0      2      1      0
  CHST9 WILD-TYPE     47     39     35     30     22     35
D744V10, multiclass
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             0              39
  CLUS_3             0              35
  CLUS_4             2              30
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(745) Variable = STK36 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK36 MUTATED        1      7      0      2      0
  STK36 WILD-TYPE     78    119     27     41     12
D745V1, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             7             119
  CLUS_3             0              27
  CLUS_4             2              41
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK36 MUTATED        2      3      0      2
  STK36 WILD-TYPE     69     73     34     61
D745V2, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             3              73
  CLUS_3             0              34
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK36 MUTATED        1      3      2      2      1
  STK36 WILD-TYPE     15     59     49     63     54
D745V3, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3              59
  CLUS_3             2              49
  CLUS_4             2              63
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK36 MUTATED        2      4      1      2
  STK36 WILD-TYPE     96     40     49     55
D745V4, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             2              96
  CLUS_2             4              40
  CLUS_3             1              49
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK36 MUTATED        6      1      1      1      1
  STK36 WILD-TYPE     56     58     39     36     58
D745V5, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK36 MUTATED        5      1      4
  STK36 WILD-TYPE    101     53     93
D745V6, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             5             101
  CLUS_2             1              53
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK36 MUTATED        7      2      1
  STK36 WILD-TYPE    116     93     70
D745V7, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             7             116
  CLUS_2             2              93
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK36 MUTATED        8      0      2
  STK36 WILD-TYPE    149     63     67
D745V8, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             8             149
  CLUS_2             0              63
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STK36 MUTATED        2      0      3      2      0      0
  STK36 WILD-TYPE     31     19     56     37     16     45
D745V9, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              19
  CLUS_3             3              56
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STK36 MUTATED        0      0      3      1      1      2
  STK36 WILD-TYPE     47     39     32     31     22     33
D745V10, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             0              39
  CLUS_3             3              32
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             2              33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(746) Variable = CCDC25 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC25 MUTATED        0      2      1      0      0
  CCDC25 WILD-TYPE     79    124     26     43     12
D746V1, multiclass
        clus
vv       CCDC25 MUTATED CCDC25 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              2              124
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC25 MUTATED        0      2      0      0
  CCDC25 WILD-TYPE     71     74     34     63
D746V2, multiclass
[1] "Remove cluster labels:" "CCDC25 MUTATED"        
clus
  CCDC25 MUTATED CCDC25 WILD-TYPE 
               2              242 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6453       TCGA-BR-6454 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457       TCGA-BR-6458 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6710 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-7715       TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8077       TCGA-BR-8078       TCGA-BR-8080       TCGA-BR-8081 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289       TCGA-BR-8291 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8297       TCGA-BR-8360 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368       TCGA-BR-8369 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8483       TCGA-BR-8484       TCGA-BR-8485       TCGA-BR-8486 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8487       TCGA-BR-8588       TCGA-BR-8589       TCGA-BR-8590 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8686       TCGA-BR-8687       TCGA-BR-8690 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-A44T       TCGA-BR-A44U       TCGA-BR-A452       TCGA-BR-A453 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-A4CQ       TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-A4IV       TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-A4J2       TCGA-BR-A4J4       TCGA-BR-A4J6       TCGA-BR-A4J7 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4PE       TCGA-BR-A4PF 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-A4QI       TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CD-5799       TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CD-5803       TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8528 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CD-8534       TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CD-A487       TCGA-CD-A489       TCGA-CD-A48A       TCGA-CD-A48C 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CD-A4MH       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4437 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8576 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT       TCGA-D7-A4YU 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY       TCGA-D7-A4Z0 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-EQ-5647       TCGA-EQ-8122       TCGA-EQ-A4SO       TCGA-F1-6177 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7735 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998       TCGA-FP-8099 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-FP-8209       TCGA-FP-8210       TCGA-FP-8211       TCGA-FP-8631 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-FP-A4BE       TCGA-FP-A4BF       TCGA-HF-7132       TCGA-HF-7133 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-HF-7136       TCGA-HJ-7597       TCGA-HU-8243       TCGA-HU-8245 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-HU-8249       TCGA-HU-8602       TCGA-HU-8604       TCGA-HU-8608 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-HU-8610       TCGA-HU-A4G2       TCGA-HU-A4G3       TCGA-HU-A4G6 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-HU-A4G8       TCGA-HU-A4G9       TCGA-HU-A4GC       TCGA-HU-A4GD 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GN       TCGA-HU-A4GP 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GU       TCGA-HU-A4GX 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-HU-A4GY       TCGA-HU-A4H0       TCGA-HU-A4H2       TCGA-HU-A4H3 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6       TCGA-HU-A4H8 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-HU-A4HD       TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-IN-8663       TCGA-IP-7968 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC25 MUTATED        0      0      2      0      1
  CCDC25 WILD-TYPE     16     62     49     65     54
D746V3, multiclass
        clus
vv       CCDC25 MUTATED CCDC25 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              0               62
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC25 MUTATED        0      3      0      0
  CCDC25 WILD-TYPE     98     41     50     57
D746V4, multiclass
        clus
vv       CCDC25 MUTATED CCDC25 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              3               41
  CLUS_3              0               50
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC25 MUTATED        1      0      1      1      0
  CCDC25 WILD-TYPE     61     59     39     36     59
D746V5, multiclass
        clus
vv       CCDC25 MUTATED CCDC25 WILD-TYPE
  CLUS_1              1               61
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC25 MUTATED        0      0      3
  CCDC25 WILD-TYPE    106     54     94
D746V6, multiclass
        clus
vv       CCDC25 MUTATED CCDC25 WILD-TYPE
  CLUS_1              0              106
  CLUS_2              0               54
  CLUS_3              3               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC25 MUTATED        3      0      0
  CCDC25 WILD-TYPE    120     95     71
D746V7, multiclass
        clus
vv       CCDC25 MUTATED CCDC25 WILD-TYPE
  CLUS_1              3              120
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC25 MUTATED        3      0      0
  CCDC25 WILD-TYPE    154     63     69
D746V8, multiclass
        clus
vv       CCDC25 MUTATED CCDC25 WILD-TYPE
  CLUS_1              3              154
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC25 MUTATED        0      1      1      0      0      0
  CCDC25 WILD-TYPE     33     18     58     39     16     45
D746V9, multiclass
[1] "Remove cluster labels:" "CCDC25 MUTATED"        
clus
  CCDC25 MUTATED CCDC25 WILD-TYPE 
               2              209 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6453       TCGA-BR-6454 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457       TCGA-BR-6458 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6710 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-7715       TCGA-BR-7717       TCGA-BR-7723       TCGA-BR-7851 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8077       TCGA-BR-8078 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8080       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8297 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8360       TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8370 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373       TCGA-BR-8380 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8487       TCGA-BR-8588 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-A44T       TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J6 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8534       TCGA-CD-8535 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MH       TCGA-CD-A4MI       TCGA-CG-4437 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4449       TCGA-CG-5717       TCGA-CG-5718 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-D7-8572       TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8576 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT       TCGA-D7-A4YU 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-D7-A4YV       TCGA-D7-A4YY       TCGA-D7-A4Z0       TCGA-EQ-5647 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-EQ-8122       TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-F1-A448       TCGA-FP-7735       TCGA-FP-7829       TCGA-FP-7998 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-FP-8099       TCGA-FP-8209       TCGA-FP-8210       TCGA-FP-8211 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-FP-8631       TCGA-FP-A4BE       TCGA-HF-7132       TCGA-HF-7136 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-HU-8243       TCGA-HU-8602       TCGA-HU-8604       TCGA-HU-8608 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-HU-A4G3       TCGA-HU-A4G8       TCGA-HU-A4GC       TCGA-HU-A4GD 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GN       TCGA-HU-A4GQ 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-HU-A4GT       TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H2 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6       TCGA-HU-A4H8 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-IP-7968 
"CCDC25 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC25 MUTATED        1      0      1      0      0      0
  CCDC25 WILD-TYPE     46     39     34     32     23     35
D746V10, multiclass
[1] "Remove cluster labels:" "CCDC25 MUTATED"        
clus
  CCDC25 MUTATED CCDC25 WILD-TYPE 
               2              209 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6453       TCGA-BR-6454 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457       TCGA-BR-6458 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6710 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7707 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-7715       TCGA-BR-7717       TCGA-BR-7723       TCGA-BR-7851 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8077       TCGA-BR-8078 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8080       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8297 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8360       TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8370 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373       TCGA-BR-8380 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8487       TCGA-BR-8588 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-A44T       TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J6 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8534       TCGA-CD-8535 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MH       TCGA-CD-A4MI       TCGA-CG-4437 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CG-4441       TCGA-CG-4449       TCGA-CG-5717       TCGA-CG-5718 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-D7-8572       TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8576 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT       TCGA-D7-A4YU 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-D7-A4YV       TCGA-D7-A4YY       TCGA-D7-A4Z0       TCGA-EQ-5647 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-EQ-8122       TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-F1-A448       TCGA-FP-7735       TCGA-FP-7829       TCGA-FP-7998 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-FP-8099       TCGA-FP-8209       TCGA-FP-8210       TCGA-FP-8211 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-FP-8631       TCGA-FP-A4BE       TCGA-HF-7132       TCGA-HF-7136 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-HU-8243       TCGA-HU-8602       TCGA-HU-8604       TCGA-HU-8608 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-HU-A4G3       TCGA-HU-A4G8       TCGA-HU-A4GC       TCGA-HU-A4GD 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GN       TCGA-HU-A4GQ 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-HU-A4GT       TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H2 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6       TCGA-HU-A4H8 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" "CCDC25 WILD-TYPE" 
      TCGA-IP-7968 
"CCDC25 WILD-TYPE" 

Clustering(747) Variable = TOP1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOP1 MUTATED        3      7      0      0      0
  TOP1 WILD-TYPE     76    119     27     43     12
D747V1, multiclass
        clus
vv       TOP1 MUTATED TOP1 WILD-TYPE
  CLUS_1            3             76
  CLUS_2            7            119
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOP1 MUTATED        2      5      2      0
  TOP1 WILD-TYPE     69     71     32     63
D747V2, multiclass
        clus
vv       TOP1 MUTATED TOP1 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            5             71
  CLUS_3            2             32
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOP1 MUTATED        0      3      4      0      2
  TOP1 WILD-TYPE     16     59     47     65     53
D747V3, multiclass
        clus
vv       TOP1 MUTATED TOP1 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            3             59
  CLUS_3            4             47
  CLUS_4            0             65
  CLUS_5            2             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOP1 MUTATED        0      5      3      1
  TOP1 WILD-TYPE     98     39     47     56
D747V4, multiclass
        clus
vv       TOP1 MUTATED TOP1 WILD-TYPE
  CLUS_1            0             98
  CLUS_2            5             39
  CLUS_3            3             47
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOP1 MUTATED        5      1      0      2      2
  TOP1 WILD-TYPE     57     58     40     35     57
D747V5, multiclass
        clus
vv       TOP1 MUTATED TOP1 WILD-TYPE
  CLUS_1            5             57
  CLUS_2            1             58
  CLUS_3            0             40
  CLUS_4            2             35
  CLUS_5            2             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TOP1 MUTATED        2      1      7
  TOP1 WILD-TYPE    104     53     90
D747V6, multiclass
        clus
vv       TOP1 MUTATED TOP1 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            1             53
  CLUS_3            7             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TOP1 MUTATED        7      0      3
  TOP1 WILD-TYPE    116     95     68
D747V7, multiclass
        clus
vv       TOP1 MUTATED TOP1 WILD-TYPE
  CLUS_1            7            116
  CLUS_2            0             95
  CLUS_3            3             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TOP1 MUTATED        6      0      4
  TOP1 WILD-TYPE    151     63     65
D747V8, multiclass
        clus
vv       TOP1 MUTATED TOP1 WILD-TYPE
  CLUS_1            6            151
  CLUS_2            0             63
  CLUS_3            4             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TOP1 MUTATED        1      1      3      2      1      0
  TOP1 WILD-TYPE     32     18     56     37     15     45
D747V9, multiclass
        clus
vv       TOP1 MUTATED TOP1 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            3             56
  CLUS_4            2             37
  CLUS_5            1             15
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TOP1 MUTATED        2      0      1      2      2      1
  TOP1 WILD-TYPE     45     39     34     30     21     34
D747V10, multiclass
        clus
vv       TOP1 MUTATED TOP1 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            1             34
  CLUS_4            2             30
  CLUS_5            2             21
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(748) Variable = THBS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THBS1 MUTATED        1     11      0      3      0
  THBS1 WILD-TYPE     78    115     27     40     12
D748V1, multiclass
        clus
vv       THBS1 MUTATED THBS1 WILD-TYPE
  CLUS_1             1              78
  CLUS_2            11             115
  CLUS_3             0              27
  CLUS_4             3              40
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THBS1 MUTATED        1      8      3      1
  THBS1 WILD-TYPE     70     68     31     62
D748V2, multiclass
        clus
vv       THBS1 MUTATED THBS1 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             8              68
  CLUS_3             3              31
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THBS1 MUTATED        0      4      2      2      3
  THBS1 WILD-TYPE     16     58     49     63     52
D748V3, multiclass
        clus
vv       THBS1 MUTATED THBS1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             4              58
  CLUS_3             2              49
  CLUS_4             2              63
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THBS1 MUTATED        3      4      3      1
  THBS1 WILD-TYPE     95     40     47     56
D748V4, multiclass
        clus
vv       THBS1 MUTATED THBS1 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             4              40
  CLUS_3             3              47
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THBS1 MUTATED        8      1      1      3      2
  THBS1 WILD-TYPE     54     58     39     34     57
D748V5, multiclass
        clus
vv       THBS1 MUTATED THBS1 WILD-TYPE
  CLUS_1             8              54
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             3              34
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THBS1 MUTATED        5      0     10
  THBS1 WILD-TYPE    101     54     87
D748V6, multiclass
        clus
vv       THBS1 MUTATED THBS1 WILD-TYPE
  CLUS_1             5             101
  CLUS_2             0              54
  CLUS_3            10              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THBS1 MUTATED       11      1      3
  THBS1 WILD-TYPE    112     94     68
D748V7, multiclass
        clus
vv       THBS1 MUTATED THBS1 WILD-TYPE
  CLUS_1            11             112
  CLUS_2             1              94
  CLUS_3             3              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THBS1 MUTATED       12      1      2
  THBS1 WILD-TYPE    145     62     67
D748V8, multiclass
        clus
vv       THBS1 MUTATED THBS1 WILD-TYPE
  CLUS_1            12             145
  CLUS_2             1              62
  CLUS_3             2              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  THBS1 MUTATED        1      2      4      4      1      0
  THBS1 WILD-TYPE     32     17     55     35     15     45
D748V9, multiclass
        clus
vv       THBS1 MUTATED THBS1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              17
  CLUS_3             4              55
  CLUS_4             4              35
  CLUS_5             1              15
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  THBS1 MUTATED        5      1      3      1      2      0
  THBS1 WILD-TYPE     42     38     32     31     21     35
D748V10, multiclass
        clus
vv       THBS1 MUTATED THBS1 WILD-TYPE
  CLUS_1             5              42
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             1              31
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(749) Variable = PGBD2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGBD2 MUTATED        0      2      0      0      1
  PGBD2 WILD-TYPE     79    124     27     43     11
D749V1, multiclass
        clus
vv       PGBD2 MUTATED PGBD2 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             2             124
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGBD2 MUTATED        0      1      0      0
  PGBD2 WILD-TYPE     71     75     34     63
D749V2, multiclass
[1] "Remove cluster labels:" "PGBD2 MUTATED"         
clus
  PGBD2 MUTATED PGBD2 WILD-TYPE 
              1             243 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296      TCGA-BR-8297 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8589 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U      TCGA-BR-A452 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J6 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-A486 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-5717      TCGA-CG-5718 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726      TCGA-CG-5727 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-EQ-5647      TCGA-EQ-8122      TCGA-EQ-A4SO 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-FP-8631      TCGA-FP-A4BE      TCGA-FP-A4BF      TCGA-HF-7132 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HF-7133      TCGA-HF-7136      TCGA-HJ-7597      TCGA-HU-8243 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-8245      TCGA-HU-8249      TCGA-HU-8602      TCGA-HU-8604 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4G3 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4G6      TCGA-HU-A4G8      TCGA-HU-A4G9      TCGA-HU-A4GC 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H0      TCGA-HU-A4H2 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4H8      TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGBD2 MUTATED        0      3      0      0      0
  PGBD2 WILD-TYPE     16     59     51     65     55
D749V3, multiclass
        clus
vv       PGBD2 MUTATED PGBD2 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              59
  CLUS_3             0              51
  CLUS_4             0              65
  CLUS_5             0              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGBD2 MUTATED        1      2      0      0
  PGBD2 WILD-TYPE     97     42     50     57
D749V4, multiclass
        clus
vv       PGBD2 MUTATED PGBD2 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             2              42
  CLUS_3             0              50
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGBD2 MUTATED        2      0      0      0      0
  PGBD2 WILD-TYPE     60     59     40     37     59
D749V5, multiclass
[1] "Remove cluster labels:" "PGBD2 MUTATED"         
clus
  PGBD2 MUTATED PGBD2 WILD-TYPE 
              2             255 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4187      TCGA-BR-4191 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8297      TCGA-BR-8361      TCGA-BR-8363 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8371      TCGA-BR-8372 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8589 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8677 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-A44T 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CR      TCGA-BR-A4CS 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J6 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-CD-5798      TCGA-CD-5799 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5803      TCGA-CD-5804 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8526      TCGA-CD-8528 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-A486      TCGA-CD-A487 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-A489      TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4301      TCGA-CG-4304 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4442 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4462 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4474 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5717 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-FP-A4BE      TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7136 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608      TCGA-HU-8610 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4G2      TCGA-HU-A4G3      TCGA-HU-A4G6      TCGA-HU-A4G8 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4G9      TCGA-HU-A4GC      TCGA-HU-A4GF      TCGA-HU-A4GH 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GT      TCGA-HU-A4GU 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H0      TCGA-HU-A4H2 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4H8      TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PGBD2 MUTATED        0      0      2
  PGBD2 WILD-TYPE    106     54     95
D749V6, multiclass
[1] "Remove cluster labels:" "PGBD2 MUTATED"         
clus
  PGBD2 MUTATED PGBD2 WILD-TYPE 
              2             255 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-4187      TCGA-BR-4191 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-4201      TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8297      TCGA-BR-8361      TCGA-BR-8363 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8371      TCGA-BR-8372 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8589 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8677 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-A44T 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CR      TCGA-BR-A4CS 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J6 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-CD-5798      TCGA-CD-5799 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5803      TCGA-CD-5804 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8526      TCGA-CD-8528 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-A486      TCGA-CD-A487 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-A489      TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4301      TCGA-CG-4304 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-4438      TCGA-CG-4440      TCGA-CG-4441      TCGA-CG-4442 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4462 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4474 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5717 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-FP-A4BE      TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7136 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608      TCGA-HU-8610 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4G2      TCGA-HU-A4G3      TCGA-HU-A4G6      TCGA-HU-A4G8 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4G9      TCGA-HU-A4GC      TCGA-HU-A4GF      TCGA-HU-A4GH 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GT      TCGA-HU-A4GU 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H0      TCGA-HU-A4H2 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4H8      TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-IN-8462      TCGA-IN-8663      TCGA-IP-7968 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PGBD2 MUTATED        2      0      1
  PGBD2 WILD-TYPE    121     95     70
D749V7, multiclass
        clus
vv       PGBD2 MUTATED PGBD2 WILD-TYPE
  CLUS_1             2             121
  CLUS_2             0              95
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PGBD2 MUTATED        3      0      0
  PGBD2 WILD-TYPE    154     63     69
D749V8, multiclass
        clus
vv       PGBD2 MUTATED PGBD2 WILD-TYPE
  CLUS_1             3             154
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PGBD2 MUTATED        0      0      0      1      0      0
  PGBD2 WILD-TYPE     33     19     59     38     16     45
D749V9, multiclass
[1] "Remove cluster labels:" "PGBD2 MUTATED"         
clus
  PGBD2 MUTATED PGBD2 WILD-TYPE 
              1             210 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4H2      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4H8      TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-IN-8663      TCGA-IP-7968 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PGBD2 MUTATED        1      0      0      0      0      0
  PGBD2 WILD-TYPE     46     39     35     32     23     35
D749V10, multiclass
[1] "Remove cluster labels:" "PGBD2 MUTATED"         
clus
  PGBD2 MUTATED PGBD2 WILD-TYPE 
              1             210 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-BR-6452      TCGA-BR-6453 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717      TCGA-BR-7723 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8077 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8296 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8534 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5717 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5726 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE      TCGA-HF-7132 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GN 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GX      TCGA-HU-A4GY 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4H2      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4H6 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-HU-A4H8      TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 
     TCGA-IN-8663      TCGA-IP-7968 
"PGBD2 WILD-TYPE" "PGBD2 WILD-TYPE" 

Clustering(750) Variable = SH3D19 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH3D19 MUTATED        0      3      0      0      0
  SH3D19 WILD-TYPE     79    123     27     43     12
D750V1, multiclass
        clus
vv       SH3D19 MUTATED SH3D19 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              3              123
  CLUS_3              0               27
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SH3D19 MUTATED        0      2      0      0
  SH3D19 WILD-TYPE     71     74     34     63
D750V2, multiclass
[1] "Remove cluster labels:" "SH3D19 MUTATED"        
clus
  SH3D19 MUTATED SH3D19 WILD-TYPE 
               2              242 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6453 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-7707       TCGA-BR-7715       TCGA-BR-7716       TCGA-BR-7717 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-7722       TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8059       TCGA-BR-8077       TCGA-BR-8078       TCGA-BR-8080 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8081       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8296       TCGA-BR-8297 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8360       TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8365       TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8369       TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8373       TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8384       TCGA-BR-8483       TCGA-BR-8484       TCGA-BR-8485 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8486       TCGA-BR-8487       TCGA-BR-8588       TCGA-BR-8589 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8682 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8686       TCGA-BR-8687       TCGA-BR-8690 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-A44T       TCGA-BR-A44U       TCGA-BR-A452       TCGA-BR-A453 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-A4CQ       TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-A4IV       TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-A4J2       TCGA-BR-A4J4       TCGA-BR-A4J6       TCGA-BR-A4J7 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4PE       TCGA-BR-A4PF 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-A4QI       TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CD-5799       TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CD-5803       TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8528 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CD-8534       TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CD-A487       TCGA-CD-A489       TCGA-CD-A48A       TCGA-CD-A48C 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI       TCGA-CD-A4MJ 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-5717       TCGA-CG-5718 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5726       TCGA-CG-5727 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-D7-8572       TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8575 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-D7-8576       TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-D7-A4Z0       TCGA-EQ-5647       TCGA-EQ-8122       TCGA-EQ-A4SO 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-FP-7735       TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-FP-8099       TCGA-FP-8209       TCGA-FP-8210       TCGA-FP-8211 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-FP-8631       TCGA-FP-A4BE       TCGA-FP-A4BF       TCGA-HF-7132 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-HF-7133       TCGA-HF-7136       TCGA-HJ-7597       TCGA-HU-8243 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-HU-8245       TCGA-HU-8249       TCGA-HU-8604       TCGA-HU-8608 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-HU-8610       TCGA-HU-A4G2       TCGA-HU-A4G3       TCGA-HU-A4G6 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-HU-A4G8       TCGA-HU-A4G9       TCGA-HU-A4GC       TCGA-HU-A4GD 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GN       TCGA-HU-A4GP 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GU       TCGA-HU-A4GX 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-HU-A4GY       TCGA-HU-A4H0       TCGA-HU-A4H2       TCGA-HU-A4H3 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6       TCGA-HU-A4H8 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-HU-A4HD       TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-IN-8663       TCGA-IP-7968 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH3D19 MUTATED        0      1      0      0      2
  SH3D19 WILD-TYPE     16     61     51     65     53
D750V3, multiclass
        clus
vv       SH3D19 MUTATED SH3D19 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              1               61
  CLUS_3              0               51
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SH3D19 MUTATED        0      2      1      0
  SH3D19 WILD-TYPE     98     42     49     57
D750V4, multiclass
        clus
vv       SH3D19 MUTATED SH3D19 WILD-TYPE
  CLUS_1              0               98
  CLUS_2              2               42
  CLUS_3              1               49
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH3D19 MUTATED        3      0      0      0      0
  SH3D19 WILD-TYPE     59     59     40     37     59
D750V5, multiclass
        clus
vv       SH3D19 MUTATED SH3D19 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              0               37
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SH3D19 MUTATED        1      0      2
  SH3D19 WILD-TYPE    105     54     95
D750V6, multiclass
        clus
vv       SH3D19 MUTATED SH3D19 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               54
  CLUS_3              2               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SH3D19 MUTATED        2      0      1
  SH3D19 WILD-TYPE    121     95     70
D750V7, multiclass
        clus
vv       SH3D19 MUTATED SH3D19 WILD-TYPE
  CLUS_1              2              121
  CLUS_2              0               95
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SH3D19 MUTATED        3      0      0
  SH3D19 WILD-TYPE    154     63     69
D750V8, multiclass
        clus
vv       SH3D19 MUTATED SH3D19 WILD-TYPE
  CLUS_1              3              154
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SH3D19 MUTATED        1      0      0      1      0      0
  SH3D19 WILD-TYPE     32     19     59     38     16     45
D750V9, multiclass
[1] "Remove cluster labels:" "SH3D19 MUTATED"        
clus
  SH3D19 MUTATED SH3D19 WILD-TYPE 
               2              209 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6453 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-7707       TCGA-BR-7715       TCGA-BR-7717       TCGA-BR-7723 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8077 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8078       TCGA-BR-8080       TCGA-BR-8284       TCGA-BR-8286 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8289       TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8296 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8297       TCGA-BR-8360       TCGA-BR-8361       TCGA-BR-8363 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8364       TCGA-BR-8365       TCGA-BR-8368       TCGA-BR-8369 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8483       TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8487 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8588       TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-A44T       TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J6 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8534       TCGA-CD-8535 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-4449       TCGA-CG-5717 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5726 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8574       TCGA-D7-8575 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-D7-8576       TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YY       TCGA-D7-A4Z0 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-EQ-5647       TCGA-EQ-8122       TCGA-F1-6177       TCGA-F1-6874 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7735       TCGA-FP-7829 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-FP-7998       TCGA-FP-8099       TCGA-FP-8209       TCGA-FP-8210 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-FP-8211       TCGA-FP-8631       TCGA-FP-A4BE       TCGA-HF-7132 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-HF-7136       TCGA-HU-8243       TCGA-HU-8604       TCGA-HU-8608 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-HU-A4G3       TCGA-HU-A4G8       TCGA-HU-A4GC       TCGA-HU-A4GD 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GN       TCGA-HU-A4GQ 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-HU-A4GT       TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H2 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6       TCGA-HU-A4H8 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-IP-7968 
"SH3D19 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SH3D19 MUTATED        1      0      0      1      0      0
  SH3D19 WILD-TYPE     46     39     35     31     23     35
D750V10, multiclass
[1] "Remove cluster labels:" "SH3D19 MUTATED"        
clus
  SH3D19 MUTATED SH3D19 WILD-TYPE 
               2              209 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-BR-6452       TCGA-BR-6453 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-7707       TCGA-BR-7715       TCGA-BR-7717       TCGA-BR-7723 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8077 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8078       TCGA-BR-8080       TCGA-BR-8284       TCGA-BR-8286 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8289       TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8296 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8297       TCGA-BR-8360       TCGA-BR-8361       TCGA-BR-8363 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8364       TCGA-BR-8365       TCGA-BR-8368       TCGA-BR-8369 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8483       TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8487 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8588       TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-A44T       TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J6 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8534       TCGA-CD-8535 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-4449       TCGA-CG-5717 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5726 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CG-5727       TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-CG-5733       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8574       TCGA-D7-8575 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-D7-8576       TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YY       TCGA-D7-A4Z0 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-EQ-5647       TCGA-EQ-8122       TCGA-F1-6177       TCGA-F1-6874 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7735       TCGA-FP-7829 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-FP-7998       TCGA-FP-8099       TCGA-FP-8209       TCGA-FP-8210 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-FP-8211       TCGA-FP-8631       TCGA-FP-A4BE       TCGA-HF-7132 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-HF-7136       TCGA-HU-8243       TCGA-HU-8604       TCGA-HU-8608 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-HU-A4G3       TCGA-HU-A4G8       TCGA-HU-A4GC       TCGA-HU-A4GD 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GN       TCGA-HU-A4GQ 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-HU-A4GT       TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H2 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6       TCGA-HU-A4H8 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" "SH3D19 WILD-TYPE" 
      TCGA-IP-7968 
"SH3D19 WILD-TYPE" 

Clustering(751) Variable = CCDC30 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC30 MUTATED        0      4      0      1      1
  CCDC30 WILD-TYPE     79    122     27     42     11
D751V1, multiclass
        clus
vv       CCDC30 MUTATED CCDC30 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              4              122
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC30 MUTATED        0      5      0      1
  CCDC30 WILD-TYPE     71     71     34     62
D751V2, multiclass
        clus
vv       CCDC30 MUTATED CCDC30 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              5               71
  CLUS_3              0               34
  CLUS_4              1               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC30 MUTATED        0      2      1      0      2
  CCDC30 WILD-TYPE     16     60     50     65     53
D751V3, multiclass
        clus
vv       CCDC30 MUTATED CCDC30 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              2               60
  CLUS_3              1               50
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC30 MUTATED        1      3      1      0
  CCDC30 WILD-TYPE     97     41     49     57
D751V4, multiclass
        clus
vv       CCDC30 MUTATED CCDC30 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              3               41
  CLUS_3              1               49
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC30 MUTATED        7      0      0      0      0
  CCDC30 WILD-TYPE     55     59     40     37     59
D751V5, multiclass
        clus
vv       CCDC30 MUTATED CCDC30 WILD-TYPE
  CLUS_1              7               55
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              0               37
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC30 MUTATED        0      0      7
  CCDC30 WILD-TYPE    106     54     90
D751V6, multiclass
        clus
vv       CCDC30 MUTATED CCDC30 WILD-TYPE
  CLUS_1              0              106
  CLUS_2              0               54
  CLUS_3              7               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC30 MUTATED        7      0      0
  CCDC30 WILD-TYPE    116     95     71
D751V7, multiclass
        clus
vv       CCDC30 MUTATED CCDC30 WILD-TYPE
  CLUS_1              7              116
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC30 MUTATED        7      0      0
  CCDC30 WILD-TYPE    150     63     69
D751V8, multiclass
        clus
vv       CCDC30 MUTATED CCDC30 WILD-TYPE
  CLUS_1              7              150
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC30 MUTATED        2      1      2      1      0      0
  CCDC30 WILD-TYPE     31     18     57     38     16     45
D751V9, multiclass
        clus
vv       CCDC30 MUTATED CCDC30 WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC30 MUTATED        3      0      1      2      0      0
  CCDC30 WILD-TYPE     44     39     34     30     23     35
D751V10, multiclass
        clus
vv       CCDC30 MUTATED CCDC30 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              2               30
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(752) Variable = C11ORF63 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF63 MUTATED        5      7      0      1      1
  C11ORF63 WILD-TYPE     74    119     27     42     11
D752V1, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                5                 74
  CLUS_2                7                119
  CLUS_3                0                 27
  CLUS_4                1                 42
  CLUS_5                1                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF63 MUTATED        4      7      2      0
  C11ORF63 WILD-TYPE     67     69     32     63
D752V2, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                4                 67
  CLUS_2                7                 69
  CLUS_3                2                 32
  CLUS_4                0                 63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF63 MUTATED        1      4      2      2      3
  C11ORF63 WILD-TYPE     15     58     49     63     52
D752V3, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                4                 58
  CLUS_3                2                 49
  CLUS_4                2                 63
  CLUS_5                3                 52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF63 MUTATED        3      6      2      1
  C11ORF63 WILD-TYPE     95     38     48     56
D752V4, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                3                 95
  CLUS_2                6                 38
  CLUS_3                2                 48
  CLUS_4                1                 56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF63 MUTATED        6      1      1      3      3
  C11ORF63 WILD-TYPE     56     58     39     34     56
D752V5, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                6                 56
  CLUS_2                1                 58
  CLUS_3                1                 39
  CLUS_4                3                 34
  CLUS_5                3                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C11ORF63 MUTATED        5      1      8
  C11ORF63 WILD-TYPE    101     53     89
D752V6, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                5                101
  CLUS_2                1                 53
  CLUS_3                8                 89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C11ORF63 MUTATED       11      1      3
  C11ORF63 WILD-TYPE    112     94     68
D752V7, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1               11                112
  CLUS_2                1                 94
  CLUS_3                3                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C11ORF63 MUTATED       12      1      2
  C11ORF63 WILD-TYPE    145     62     67
D752V8, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1               12                145
  CLUS_2                1                 62
  CLUS_3                2                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C11ORF63 MUTATED        5      2      4      1      0      0
  C11ORF63 WILD-TYPE     28     17     55     38     16     45
D752V9, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                5                 28
  CLUS_2                2                 17
  CLUS_3                4                 55
  CLUS_4                1                 38
  CLUS_5                0                 16
  CLUS_6                0                 45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C11ORF63 MUTATED        6      0      4      0      1      1
  C11ORF63 WILD-TYPE     41     39     31     32     22     34
D752V10, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                6                 41
  CLUS_2                0                 39
  CLUS_3                4                 31
  CLUS_4                0                 32
  CLUS_5                1                 22
  CLUS_6                1                 34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(753) Variable = LRRC52 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRC52 MUTATED        1      4      2      2      0
  LRRC52 WILD-TYPE     78    122     25     41     12
D753V1, multiclass
        clus
vv       LRRC52 MUTATED LRRC52 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              4              122
  CLUS_3              2               25
  CLUS_4              2               41
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC52 MUTATED        2      3      3      0
  LRRC52 WILD-TYPE     69     73     31     63
D753V2, multiclass
        clus
vv       LRRC52 MUTATED LRRC52 WILD-TYPE
  CLUS_1              2               69
  CLUS_2              3               73
  CLUS_3              3               31
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRC52 MUTATED        0      3      0      2      2
  LRRC52 WILD-TYPE     16     59     51     63     53
D753V3, multiclass
        clus
vv       LRRC52 MUTATED LRRC52 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              3               59
  CLUS_3              0               51
  CLUS_4              2               63
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC52 MUTATED        2      1      3      1
  LRRC52 WILD-TYPE     96     43     47     56
D753V4, multiclass
        clus
vv       LRRC52 MUTATED LRRC52 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              1               43
  CLUS_3              3               47
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRC52 MUTATED        6      1      1      0      1
  LRRC52 WILD-TYPE     56     58     39     37     58
D753V5, multiclass
        clus
vv       LRRC52 MUTATED LRRC52 WILD-TYPE
  CLUS_1              6               56
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              0               37
  CLUS_5              1               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC52 MUTATED        5      0      4
  LRRC52 WILD-TYPE    101     54     93
D753V6, multiclass
        clus
vv       LRRC52 MUTATED LRRC52 WILD-TYPE
  CLUS_1              5              101
  CLUS_2              0               54
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC52 MUTATED        7      2      0
  LRRC52 WILD-TYPE    116     93     71
D753V7, multiclass
        clus
vv       LRRC52 MUTATED LRRC52 WILD-TYPE
  CLUS_1              7              116
  CLUS_2              2               93
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC52 MUTATED        7      1      1
  LRRC52 WILD-TYPE    150     62     68
D753V8, multiclass
        clus
vv       LRRC52 MUTATED LRRC52 WILD-TYPE
  CLUS_1              7              150
  CLUS_2              1               62
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRRC52 MUTATED        0      1      3      2      0      1
  LRRC52 WILD-TYPE     33     18     56     37     16     44
D753V9, multiclass
        clus
vv       LRRC52 MUTATED LRRC52 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              1               18
  CLUS_3              3               56
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              1               44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRRC52 MUTATED        3      0      1      0      3      0
  LRRC52 WILD-TYPE     44     39     34     32     20     35
D753V10, multiclass
        clus
vv       LRRC52 MUTATED LRRC52 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              0               32
  CLUS_5              3               20
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(754) Variable = TOX MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOX MUTATED        2      6      1      0      0
  TOX WILD-TYPE     77    120     26     43     12
D754V1, multiclass
        clus
vv       TOX MUTATED TOX WILD-TYPE
  CLUS_1           2            77
  CLUS_2           6           120
  CLUS_3           1            26
  CLUS_4           0            43
  CLUS_5           0            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOX MUTATED        2      5      0      1
  TOX WILD-TYPE     69     71     34     62
D754V2, multiclass
        clus
vv       TOX MUTATED TOX WILD-TYPE
  CLUS_1           2            69
  CLUS_2           5            71
  CLUS_3           0            34
  CLUS_4           1            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOX MUTATED        1      6      0      0      1
  TOX WILD-TYPE     15     56     51     65     54
D754V3, multiclass
        clus
vv       TOX MUTATED TOX WILD-TYPE
  CLUS_1           1            15
  CLUS_2           6            56
  CLUS_3           0            51
  CLUS_4           0            65
  CLUS_5           1            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOX MUTATED        2      2      4      0
  TOX WILD-TYPE     96     42     46     57
D754V4, multiclass
        clus
vv       TOX MUTATED TOX WILD-TYPE
  CLUS_1           2            96
  CLUS_2           2            42
  CLUS_3           4            46
  CLUS_4           0            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOX MUTATED        1      2      1      2      2
  TOX WILD-TYPE     61     57     39     35     57
D754V5, multiclass
        clus
vv       TOX MUTATED TOX WILD-TYPE
  CLUS_1           1            61
  CLUS_2           2            57
  CLUS_3           1            39
  CLUS_4           2            35
  CLUS_5           2            57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TOX MUTATED        1      3      4
  TOX WILD-TYPE    105     51     93
D754V6, multiclass
        clus
vv       TOX MUTATED TOX WILD-TYPE
  CLUS_1           1           105
  CLUS_2           3            51
  CLUS_3           4            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TOX MUTATED        3      4      2
  TOX WILD-TYPE    120     91     69
D754V7, multiclass
        clus
vv       TOX MUTATED TOX WILD-TYPE
  CLUS_1           3           120
  CLUS_2           4            91
  CLUS_3           2            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TOX MUTATED        4      3      2
  TOX WILD-TYPE    153     60     67
D754V8, multiclass
        clus
vv       TOX MUTATED TOX WILD-TYPE
  CLUS_1           4           153
  CLUS_2           3            60
  CLUS_3           2            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TOX MUTATED        2      0      2      2      0      1
  TOX WILD-TYPE     31     19     57     37     16     44
D754V9, multiclass
        clus
vv       TOX MUTATED TOX WILD-TYPE
  CLUS_1           2            31
  CLUS_2           0            19
  CLUS_3           2            57
  CLUS_4           2            37
  CLUS_5           0            16
  CLUS_6           1            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TOX MUTATED        3      1      1      1      1      0
  TOX WILD-TYPE     44     38     34     31     22     35
D754V10, multiclass
        clus
vv       TOX MUTATED TOX WILD-TYPE
  CLUS_1           3            44
  CLUS_2           1            38
  CLUS_3           1            34
  CLUS_4           1            31
  CLUS_5           1            22
  CLUS_6           0            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(755) Variable = FBXO34 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO34 MUTATED        0      6      0      1      0
  FBXO34 WILD-TYPE     79    120     27     42     12
D755V1, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              6              120
  CLUS_3              0               27
  CLUS_4              1               42
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO34 MUTATED        0      3      2      2
  FBXO34 WILD-TYPE     71     73     32     61
D755V2, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              3               73
  CLUS_3              2               32
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO34 MUTATED        0      2      1      1      1
  FBXO34 WILD-TYPE     16     60     50     64     54
D755V3, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              2               60
  CLUS_3              1               50
  CLUS_4              1               64
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO34 MUTATED        1      2      1      1
  FBXO34 WILD-TYPE     97     42     49     56
D755V4, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              2               42
  CLUS_3              1               49
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO34 MUTATED        6      0      0      1      0
  FBXO34 WILD-TYPE     56     59     40     36     59
D755V5, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              6               56
  CLUS_2              0               59
  CLUS_3              0               40
  CLUS_4              1               36
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO34 MUTATED        4      0      3
  FBXO34 WILD-TYPE    102     54     94
D755V6, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              4              102
  CLUS_2              0               54
  CLUS_3              3               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO34 MUTATED        6      1      0
  FBXO34 WILD-TYPE    117     94     71
D755V7, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              6              117
  CLUS_2              1               94
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO34 MUTATED        6      1      0
  FBXO34 WILD-TYPE    151     62     69
D755V8, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              6              151
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBXO34 MUTATED        0      0      5      2      0      0
  FBXO34 WILD-TYPE     33     19     54     37     16     45
D755V9, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              0               33
  CLUS_2              0               19
  CLUS_3              5               54
  CLUS_4              2               37
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBXO34 MUTATED        2      0      3      1      1      0
  FBXO34 WILD-TYPE     45     39     32     31     22     35
D755V10, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              1               31
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(756) Variable = CAB39L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CAB39L MUTATED        0      5      2      0      1
  CAB39L WILD-TYPE     79    121     25     43     11
D756V1, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              0               79
  CLUS_2              5              121
  CLUS_3              2               25
  CLUS_4              0               43
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAB39L MUTATED        0      6      0      0
  CAB39L WILD-TYPE     71     70     34     63
D756V2, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              0               71
  CLUS_2              6               70
  CLUS_3              0               34
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CAB39L MUTATED        1      2      1      1      3
  CAB39L WILD-TYPE     15     60     50     64     52
D756V3, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              1               15
  CLUS_2              2               60
  CLUS_3              1               50
  CLUS_4              1               64
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAB39L MUTATED        2      5      0      1
  CAB39L WILD-TYPE     96     39     50     56
D756V4, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              2               96
  CLUS_2              5               39
  CLUS_3              0               50
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CAB39L MUTATED        4      0      2      0      0
  CAB39L WILD-TYPE     58     59     38     37     59
D756V5, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              4               58
  CLUS_2              0               59
  CLUS_3              2               38
  CLUS_4              0               37
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CAB39L MUTATED        0      0      6
  CAB39L WILD-TYPE    106     54     91
D756V6, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              0              106
  CLUS_2              0               54
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CAB39L MUTATED        6      1      1
  CAB39L WILD-TYPE    117     94     70
D756V7, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              6              117
  CLUS_2              1               94
  CLUS_3              1               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CAB39L MUTATED        7      0      1
  CAB39L WILD-TYPE    150     63     68
D756V8, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              7              150
  CLUS_2              0               63
  CLUS_3              1               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CAB39L MUTATED        2      0      3      1      0      0
  CAB39L WILD-TYPE     31     19     56     38     16     45
D756V9, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              2               31
  CLUS_2              0               19
  CLUS_3              3               56
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CAB39L MUTATED        3      0      2      1      0      0
  CAB39L WILD-TYPE     44     39     33     31     23     35
D756V10, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(757) Variable = VASH1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VASH1 MUTATED        0      4      0      1      2
  VASH1 WILD-TYPE     79    122     27     42     10
D757V1, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             4             122
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VASH1 MUTATED        0      4      1      1
  VASH1 WILD-TYPE     71     72     33     62
D757V2, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             4              72
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VASH1 MUTATED        0      1      2      1      2
  VASH1 WILD-TYPE     16     61     49     64     53
D757V3, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              61
  CLUS_3             2              49
  CLUS_4             1              64
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VASH1 MUTATED        1      3      1      1
  VASH1 WILD-TYPE     97     41     49     56
D757V4, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             3              41
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VASH1 MUTATED        4      1      1      1      0
  VASH1 WILD-TYPE     58     58     39     36     59
D757V5, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VASH1 MUTATED        0      1      6
  VASH1 WILD-TYPE    106     53     91
D757V6, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             1              53
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VASH1 MUTATED        6      1      0
  VASH1 WILD-TYPE    117     94     71
D757V7, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             6             117
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VASH1 MUTATED        6      1      0
  VASH1 WILD-TYPE    151     62     69
D757V8, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             6             151
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  VASH1 MUTATED        1      0      1      0      0      1
  VASH1 WILD-TYPE     32     19     58     39     16     44
D757V9, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             1              58
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  VASH1 MUTATED        0      1      1      1      0      0
  VASH1 WILD-TYPE     47     38     34     31     23     35
D757V10, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             1              38
  CLUS_3             1              34
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(758) Variable = HECA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HECA MUTATED        0     11      0      0      1
  HECA WILD-TYPE     79    115     27     43     11
D758V1, multiclass
        clus
vv       HECA MUTATED HECA WILD-TYPE
  CLUS_1            0             79
  CLUS_2           11            115
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HECA MUTATED        0      5      2      3
  HECA WILD-TYPE     71     71     32     60
D758V2, multiclass
        clus
vv       HECA MUTATED HECA WILD-TYPE
  CLUS_1            0             71
  CLUS_2            5             71
  CLUS_3            2             32
  CLUS_4            3             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HECA MUTATED        1      2      3      0      3
  HECA WILD-TYPE     15     60     48     65     52
D758V3, multiclass
        clus
vv       HECA MUTATED HECA WILD-TYPE
  CLUS_1            1             15
  CLUS_2            2             60
  CLUS_3            3             48
  CLUS_4            0             65
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HECA MUTATED        4      3      2      0
  HECA WILD-TYPE     94     41     48     57
D758V4, multiclass
        clus
vv       HECA MUTATED HECA WILD-TYPE
  CLUS_1            4             94
  CLUS_2            3             41
  CLUS_3            2             48
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HECA MUTATED        9      0      2      0      0
  HECA WILD-TYPE     53     59     38     37     59
D758V5, multiclass
        clus
vv       HECA MUTATED HECA WILD-TYPE
  CLUS_1            9             53
  CLUS_2            0             59
  CLUS_3            2             38
  CLUS_4            0             37
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HECA MUTATED        3      0      8
  HECA WILD-TYPE    103     54     89
D758V6, multiclass
        clus
vv       HECA MUTATED HECA WILD-TYPE
  CLUS_1            3            103
  CLUS_2            0             54
  CLUS_3            8             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HECA MUTATED       12      0      0
  HECA WILD-TYPE    111     95     71
D758V7, multiclass
        clus
vv       HECA MUTATED HECA WILD-TYPE
  CLUS_1           12            111
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HECA MUTATED       12      0      0
  HECA WILD-TYPE    145     63     69
D758V8, multiclass
        clus
vv       HECA MUTATED HECA WILD-TYPE
  CLUS_1           12            145
  CLUS_2            0             63
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HECA MUTATED        1      1      3      2      0      0
  HECA WILD-TYPE     32     18     56     37     16     45
D758V9, multiclass
        clus
vv       HECA MUTATED HECA WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            3             56
  CLUS_4            2             37
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HECA MUTATED        2      0      3      0      2      0
  HECA WILD-TYPE     45     39     32     32     21     35
D758V10, multiclass
        clus
vv       HECA MUTATED HECA WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            3             32
  CLUS_4            0             32
  CLUS_5            2             21
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(759) Variable = TMEM39A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM39A MUTATED        0      5      1      1      0
  TMEM39A WILD-TYPE     79    121     26     42     12
D759V1, multiclass
        clus
vv       TMEM39A MUTATED TMEM39A WILD-TYPE
  CLUS_1               0                79
  CLUS_2               5               121
  CLUS_3               1                26
  CLUS_4               1                42
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM39A MUTATED        1      6      1      0
  TMEM39A WILD-TYPE     70     70     33     63
D759V2, multiclass
        clus
vv       TMEM39A MUTATED TMEM39A WILD-TYPE
  CLUS_1               1                70
  CLUS_2               6                70
  CLUS_3               1                33
  CLUS_4               0                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM39A MUTATED        0      2      1      1      1
  TMEM39A WILD-TYPE     16     60     50     64     54
D759V3, multiclass
        clus
vv       TMEM39A MUTATED TMEM39A WILD-TYPE
  CLUS_1               0                16
  CLUS_2               2                60
  CLUS_3               1                50
  CLUS_4               1                64
  CLUS_5               1                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM39A MUTATED        0      3      2      0
  TMEM39A WILD-TYPE     98     41     48     57
D759V4, multiclass
        clus
vv       TMEM39A MUTATED TMEM39A WILD-TYPE
  CLUS_1               0                98
  CLUS_2               3                41
  CLUS_3               2                48
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM39A MUTATED        4      0      0      3      1
  TMEM39A WILD-TYPE     58     59     40     34     58
D759V5, multiclass
        clus
vv       TMEM39A MUTATED TMEM39A WILD-TYPE
  CLUS_1               4                58
  CLUS_2               0                59
  CLUS_3               0                40
  CLUS_4               3                34
  CLUS_5               1                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM39A MUTATED        2      0      6
  TMEM39A WILD-TYPE    104     54     91
D759V6, multiclass
        clus
vv       TMEM39A MUTATED TMEM39A WILD-TYPE
  CLUS_1               2               104
  CLUS_2               0                54
  CLUS_3               6                91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM39A MUTATED        7      1      0
  TMEM39A WILD-TYPE    116     94     71
D759V7, multiclass
        clus
vv       TMEM39A MUTATED TMEM39A WILD-TYPE
  CLUS_1               7               116
  CLUS_2               1                94
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM39A MUTATED        7      1      0
  TMEM39A WILD-TYPE    150     62     69
D759V8, multiclass
        clus
vv       TMEM39A MUTATED TMEM39A WILD-TYPE
  CLUS_1               7               150
  CLUS_2               1                62
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM39A MUTATED        1      2      2      1      0      1
  TMEM39A WILD-TYPE     32     17     57     38     16     44
D759V9, multiclass
        clus
vv       TMEM39A MUTATED TMEM39A WILD-TYPE
  CLUS_1               1                32
  CLUS_2               2                17
  CLUS_3               2                57
  CLUS_4               1                38
  CLUS_5               0                16
  CLUS_6               1                44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM39A MUTATED        4      0      2      0      1      0
  TMEM39A WILD-TYPE     43     39     33     32     22     35
D759V10, multiclass
        clus
vv       TMEM39A MUTATED TMEM39A WILD-TYPE
  CLUS_1               4                43
  CLUS_2               0                39
  CLUS_3               2                33
  CLUS_4               0                32
  CLUS_5               1                22
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(760) Variable = BRMS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRMS1 MUTATED        1      5      0      0      0
  BRMS1 WILD-TYPE     78    121     27     43     12
D760V1, multiclass
        clus
vv       BRMS1 MUTATED BRMS1 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             5             121
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRMS1 MUTATED        1      3      1      0
  BRMS1 WILD-TYPE     70     73     33     63
D760V2, multiclass
        clus
vv       BRMS1 MUTATED BRMS1 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             3              73
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRMS1 MUTATED        0      0      1      1      1
  BRMS1 WILD-TYPE     16     62     50     64     54
D760V3, multiclass
        clus
vv       BRMS1 MUTATED BRMS1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             0              62
  CLUS_3             1              50
  CLUS_4             1              64
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRMS1 MUTATED        0      1      1      1
  BRMS1 WILD-TYPE     98     43     49     56
D760V4, multiclass
        clus
vv       BRMS1 MUTATED BRMS1 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             1              43
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRMS1 MUTATED        3      1      0      1      1
  BRMS1 WILD-TYPE     59     58     40     36     58
D760V5, multiclass
        clus
vv       BRMS1 MUTATED BRMS1 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRMS1 MUTATED        1      1      4
  BRMS1 WILD-TYPE    105     53     93
D760V6, multiclass
        clus
vv       BRMS1 MUTATED BRMS1 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             1              53
  CLUS_3             4              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRMS1 MUTATED        4      1      1
  BRMS1 WILD-TYPE    119     94     70
D760V7, multiclass
        clus
vv       BRMS1 MUTATED BRMS1 WILD-TYPE
  CLUS_1             4             119
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRMS1 MUTATED        4      1      1
  BRMS1 WILD-TYPE    153     62     68
D760V8, multiclass
        clus
vv       BRMS1 MUTATED BRMS1 WILD-TYPE
  CLUS_1             4             153
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BRMS1 MUTATED        0      2      1      1      1      0
  BRMS1 WILD-TYPE     33     17     58     38     15     45
D760V9, multiclass
        clus
vv       BRMS1 MUTATED BRMS1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              17
  CLUS_3             1              58
  CLUS_4             1              38
  CLUS_5             1              15
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BRMS1 MUTATED        2      0      1      0      1      1
  BRMS1 WILD-TYPE     45     39     34     32     22     34
D760V10, multiclass
        clus
vv       BRMS1 MUTATED BRMS1 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(761) Variable = SPTLC3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPTLC3 MUTATED        4      5      1      1      1
  SPTLC3 WILD-TYPE     75    121     26     42     11
D761V1, multiclass
        clus
vv       SPTLC3 MUTATED SPTLC3 WILD-TYPE
  CLUS_1              4               75
  CLUS_2              5              121
  CLUS_3              1               26
  CLUS_4              1               42
  CLUS_5              1               11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTLC3 MUTATED        4      4      1      2
  SPTLC3 WILD-TYPE     67     72     33     61
D761V2, multiclass
        clus
vv       SPTLC3 MUTATED SPTLC3 WILD-TYPE
  CLUS_1              4               67
  CLUS_2              4               72
  CLUS_3              1               33
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPTLC3 MUTATED        1      6      2      1      1
  SPTLC3 WILD-TYPE     15     56     49     64     54
D761V3, multiclass
        clus
vv       SPTLC3 MUTATED SPTLC3 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              6               56
  CLUS_3              2               49
  CLUS_4              1               64
  CLUS_5              1               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTLC3 MUTATED        4      2      5      0
  SPTLC3 WILD-TYPE     94     42     45     57
D761V4, multiclass
        clus
vv       SPTLC3 MUTATED SPTLC3 WILD-TYPE
  CLUS_1              4               94
  CLUS_2              2               42
  CLUS_3              5               45
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPTLC3 MUTATED        3      1      1      0      4
  SPTLC3 WILD-TYPE     59     58     39     37     55
D761V5, multiclass
        clus
vv       SPTLC3 MUTATED SPTLC3 WILD-TYPE
  CLUS_1              3               59
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              0               37
  CLUS_5              4               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPTLC3 MUTATED        7      0      2
  SPTLC3 WILD-TYPE     99     54     95
D761V6, multiclass
        clus
vv       SPTLC3 MUTATED SPTLC3 WILD-TYPE
  CLUS_1              7               99
  CLUS_2              0               54
  CLUS_3              2               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPTLC3 MUTATED        7      1      4
  SPTLC3 WILD-TYPE    116     94     67
D761V7, multiclass
        clus
vv       SPTLC3 MUTATED SPTLC3 WILD-TYPE
  CLUS_1              7              116
  CLUS_2              1               94
  CLUS_3              4               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPTLC3 MUTATED        6      2      4
  SPTLC3 WILD-TYPE    151     61     65
D761V8, multiclass
        clus
vv       SPTLC3 MUTATED SPTLC3 WILD-TYPE
  CLUS_1              6              151
  CLUS_2              2               61
  CLUS_3              4               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPTLC3 MUTATED        3      0      4      0      1      0
  SPTLC3 WILD-TYPE     30     19     55     39     15     45
D761V9, multiclass
        clus
vv       SPTLC3 MUTATED SPTLC3 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              0               19
  CLUS_3              4               55
  CLUS_4              0               39
  CLUS_5              1               15
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPTLC3 MUTATED        1      0      3      1      0      3
  SPTLC3 WILD-TYPE     46     39     32     31     23     32
D761V10, multiclass
        clus
vv       SPTLC3 MUTATED SPTLC3 WILD-TYPE
  CLUS_1              1               46
  CLUS_2              0               39
  CLUS_3              3               32
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              3               32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(762) Variable = CLCA4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLCA4 MUTATED        0      9      0      1      0
  CLCA4 WILD-TYPE     79    117     27     42     12
D762V1, multiclass
        clus
vv       CLCA4 MUTATED CLCA4 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             9             117
  CLUS_3             0              27
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCA4 MUTATED        0      4      3      2
  CLCA4 WILD-TYPE     71     72     31     61
D762V2, multiclass
        clus
vv       CLCA4 MUTATED CLCA4 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             4              72
  CLUS_3             3              31
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLCA4 MUTATED        0      5      2      1      2
  CLCA4 WILD-TYPE     16     57     49     64     53
D762V3, multiclass
        clus
vv       CLCA4 MUTATED CLCA4 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             5              57
  CLUS_3             2              49
  CLUS_4             1              64
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCA4 MUTATED        0      5      2      3
  CLCA4 WILD-TYPE     98     39     48     54
D762V4, multiclass
        clus
vv       CLCA4 MUTATED CLCA4 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             5              39
  CLUS_3             2              48
  CLUS_4             3              54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLCA4 MUTATED        9      1      0      1      0
  CLCA4 WILD-TYPE     53     58     40     36     59
D762V5, multiclass
        clus
vv       CLCA4 MUTATED CLCA4 WILD-TYPE
  CLUS_1             9              53
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLCA4 MUTATED        4      1      6
  CLCA4 WILD-TYPE    102     53     91
D762V6, multiclass
        clus
vv       CLCA4 MUTATED CLCA4 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             1              53
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLCA4 MUTATED        9      1      1
  CLCA4 WILD-TYPE    114     94     70
D762V7, multiclass
        clus
vv       CLCA4 MUTATED CLCA4 WILD-TYPE
  CLUS_1             9             114
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLCA4 MUTATED        9      1      1
  CLCA4 WILD-TYPE    148     62     68
D762V8, multiclass
        clus
vv       CLCA4 MUTATED CLCA4 WILD-TYPE
  CLUS_1             9             148
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CLCA4 MUTATED        1      1      5      2      0      0
  CLCA4 WILD-TYPE     32     18     54     37     16     45
D762V9, multiclass
        clus
vv       CLCA4 MUTATED CLCA4 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             5              54
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CLCA4 MUTATED        2      0      4      1      2      0
  CLCA4 WILD-TYPE     45     39     31     31     21     35
D762V10, multiclass
        clus
vv       CLCA4 MUTATED CLCA4 WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             4              31
  CLUS_4             1              31
  CLUS_5             2              21
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(763) Variable = DENND1C MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DENND1C MUTATED        1      5      0      0      0
  DENND1C WILD-TYPE     78    121     27     43     12
D763V1, multiclass
        clus
vv       DENND1C MUTATED DENND1C WILD-TYPE
  CLUS_1               1                78
  CLUS_2               5               121
  CLUS_3               0                27
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DENND1C MUTATED        1      4      1      1
  DENND1C WILD-TYPE     70     72     33     62
D763V2, multiclass
        clus
vv       DENND1C MUTATED DENND1C WILD-TYPE
  CLUS_1               1                70
  CLUS_2               4                72
  CLUS_3               1                33
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DENND1C MUTATED        0      3      1      0      0
  DENND1C WILD-TYPE     16     59     50     65     55
D763V3, multiclass
        clus
vv       DENND1C MUTATED DENND1C WILD-TYPE
  CLUS_1               0                16
  CLUS_2               3                59
  CLUS_3               1                50
  CLUS_4               0                65
  CLUS_5               0                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DENND1C MUTATED        0      3      1      0
  DENND1C WILD-TYPE     98     41     49     57
D763V4, multiclass
        clus
vv       DENND1C MUTATED DENND1C WILD-TYPE
  CLUS_1               0                98
  CLUS_2               3                41
  CLUS_3               1                49
  CLUS_4               0                57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DENND1C MUTATED        4      0      0      1      0
  DENND1C WILD-TYPE     58     59     40     36     59
D763V5, multiclass
        clus
vv       DENND1C MUTATED DENND1C WILD-TYPE
  CLUS_1               4                58
  CLUS_2               0                59
  CLUS_3               0                40
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DENND1C MUTATED        1      0      4
  DENND1C WILD-TYPE    105     54     93
D763V6, multiclass
        clus
vv       DENND1C MUTATED DENND1C WILD-TYPE
  CLUS_1               1               105
  CLUS_2               0                54
  CLUS_3               4                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DENND1C MUTATED        6      0      1
  DENND1C WILD-TYPE    117     95     70
D763V7, multiclass
        clus
vv       DENND1C MUTATED DENND1C WILD-TYPE
  CLUS_1               6               117
  CLUS_2               0                95
  CLUS_3               1                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DENND1C MUTATED        5      1      1
  DENND1C WILD-TYPE    152     62     68
D763V8, multiclass
        clus
vv       DENND1C MUTATED DENND1C WILD-TYPE
  CLUS_1               5               152
  CLUS_2               1                62
  CLUS_3               1                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DENND1C MUTATED        2      0      3      1      0      0
  DENND1C WILD-TYPE     31     19     56     38     16     45
D763V9, multiclass
        clus
vv       DENND1C MUTATED DENND1C WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                19
  CLUS_3               3                56
  CLUS_4               1                38
  CLUS_5               0                16
  CLUS_6               0                45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DENND1C MUTATED        3      0      2      0      1      0
  DENND1C WILD-TYPE     44     39     33     32     22     35
D763V10, multiclass
        clus
vv       DENND1C MUTATED DENND1C WILD-TYPE
  CLUS_1               3                44
  CLUS_2               0                39
  CLUS_3               2                33
  CLUS_4               0                32
  CLUS_5               1                22
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(764) Variable = OR4M2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR4M2 MUTATED        0      8      2      1      1
  OR4M2 WILD-TYPE     79    118     25     42     11
D764V1, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             8             118
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4M2 MUTATED        0      8      1      2
  OR4M2 WILD-TYPE     71     68     33     61
D764V2, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             8              68
  CLUS_3             1              33
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR4M2 MUTATED        1      6      1      0      4
  OR4M2 WILD-TYPE     15     56     50     65     51
D764V3, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             6              56
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR4M2 MUTATED        3      5      4      0
  OR4M2 WILD-TYPE     95     39     46     57
D764V4, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             5              39
  CLUS_3             4              46
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR4M2 MUTATED        7      0      0      4      0
  OR4M2 WILD-TYPE     55     59     40     33     59
D764V5, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             7              55
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             4              33
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4M2 MUTATED        3      1      7
  OR4M2 WILD-TYPE    103     53     90
D764V6, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             1              53
  CLUS_3             7              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4M2 MUTATED        9      2      1
  OR4M2 WILD-TYPE    114     93     70
D764V7, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             9             114
  CLUS_2             2              93
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR4M2 MUTATED       11      1      0
  OR4M2 WILD-TYPE    146     62     69
D764V8, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1            11             146
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR4M2 MUTATED        3      1      2      4      0      0
  OR4M2 WILD-TYPE     30     18     57     35     16     45
D764V9, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             3              30
  CLUS_2             1              18
  CLUS_3             2              57
  CLUS_4             4              35
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR4M2 MUTATED        4      0      2      1      3      0
  OR4M2 WILD-TYPE     43     39     33     31     20     35
D764V10, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             1              31
  CLUS_5             3              20
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(765) Variable = USP13 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP13 MUTATED        1      6      2      1      1
  USP13 WILD-TYPE     78    120     25     42     11
D765V1, multiclass
        clus
vv       USP13 MUTATED USP13 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             6             120
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP13 MUTATED        2      1      3      0
  USP13 WILD-TYPE     69     75     31     63
D765V2, multiclass
        clus
vv       USP13 MUTATED USP13 WILD-TYPE
  CLUS_1             2              69
  CLUS_2             1              75
  CLUS_3             3              31
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP13 MUTATED        0      5      3      0      2
  USP13 WILD-TYPE     16     57     48     65     53
D765V3, multiclass
        clus
vv       USP13 MUTATED USP13 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             5              57
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP13 MUTATED        5      3      2      0
  USP13 WILD-TYPE     93     41     48     57
D765V4, multiclass
        clus
vv       USP13 MUTATED USP13 WILD-TYPE
  CLUS_1             5              93
  CLUS_2             3              41
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP13 MUTATED        6      0      1      1      1
  USP13 WILD-TYPE     56     59     39     36     58
D765V5, multiclass
        clus
vv       USP13 MUTATED USP13 WILD-TYPE
  CLUS_1             6              56
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             1              36
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP13 MUTATED        2      0      7
  USP13 WILD-TYPE    104     54     90
D765V6, multiclass
        clus
vv       USP13 MUTATED USP13 WILD-TYPE
  CLUS_1             2             104
  CLUS_2             0              54
  CLUS_3             7              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP13 MUTATED        8      1      2
  USP13 WILD-TYPE    115     94     69
D765V7, multiclass
        clus
vv       USP13 MUTATED USP13 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             1              94
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP13 MUTATED        8      0      3
  USP13 WILD-TYPE    149     63     66
D765V8, multiclass
        clus
vv       USP13 MUTATED USP13 WILD-TYPE
  CLUS_1             8             149
  CLUS_2             0              63
  CLUS_3             3              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  USP13 MUTATED        1      0      1      4      0      0
  USP13 WILD-TYPE     32     19     58     35     16     45
D765V9, multiclass
        clus
vv       USP13 MUTATED USP13 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             0              19
  CLUS_3             1              58
  CLUS_4             4              35
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  USP13 MUTATED        0      0      1      0      3      2
  USP13 WILD-TYPE     47     39     34     32     20     33
D765V10, multiclass
        clus
vv       USP13 MUTATED USP13 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             0              32
  CLUS_5             3              20
  CLUS_6             2              33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(766) Variable = WNT9A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNT9A MUTATED        1      5      2      0      0
  WNT9A WILD-TYPE     78    121     25     43     12
D766V1, multiclass
        clus
vv       WNT9A MUTATED WNT9A WILD-TYPE
  CLUS_1             1              78
  CLUS_2             5             121
  CLUS_3             2              25
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT9A MUTATED        1      4      2      0
  WNT9A WILD-TYPE     70     72     32     63
D766V2, multiclass
        clus
vv       WNT9A MUTATED WNT9A WILD-TYPE
  CLUS_1             1              70
  CLUS_2             4              72
  CLUS_3             2              32
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNT9A MUTATED        0      1      2      1      2
  WNT9A WILD-TYPE     16     61     49     64     53
D766V3, multiclass
        clus
vv       WNT9A MUTATED WNT9A WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              61
  CLUS_3             2              49
  CLUS_4             1              64
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT9A MUTATED        2      1      2      1
  WNT9A WILD-TYPE     96     43     48     56
D766V4, multiclass
        clus
vv       WNT9A MUTATED WNT9A WILD-TYPE
  CLUS_1             2              96
  CLUS_2             1              43
  CLUS_3             2              48
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNT9A MUTATED        3      1      0      3      1
  WNT9A WILD-TYPE     59     58     40     34     58
D766V5, multiclass
        clus
vv       WNT9A MUTATED WNT9A WILD-TYPE
  CLUS_1             3              59
  CLUS_2             1              58
  CLUS_3             0              40
  CLUS_4             3              34
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WNT9A MUTATED        2      1      5
  WNT9A WILD-TYPE    104     53     92
D766V6, multiclass
        clus
vv       WNT9A MUTATED WNT9A WILD-TYPE
  CLUS_1             2             104
  CLUS_2             1              53
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WNT9A MUTATED        5      1      2
  WNT9A WILD-TYPE    118     94     69
D766V7, multiclass
        clus
vv       WNT9A MUTATED WNT9A WILD-TYPE
  CLUS_1             5             118
  CLUS_2             1              94
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WNT9A MUTATED        6      1      1
  WNT9A WILD-TYPE    151     62     68
D766V8, multiclass
        clus
vv       WNT9A MUTATED WNT9A WILD-TYPE
  CLUS_1             6             151
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WNT9A MUTATED        0      2      1      1      1      1
  WNT9A WILD-TYPE     33     17     58     38     15     44
D766V9, multiclass
        clus
vv       WNT9A MUTATED WNT9A WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              17
  CLUS_3             1              58
  CLUS_4             1              38
  CLUS_5             1              15
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WNT9A MUTATED        3      1      0      0      1      1
  WNT9A WILD-TYPE     44     38     35     32     22     34
D766V10, multiclass
        clus
vv       WNT9A MUTATED WNT9A WILD-TYPE
  CLUS_1             3              44
  CLUS_2             1              38
  CLUS_3             0              35
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(767) Variable = MAGI2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAGI2 MUTATED        4     14      2      4      2
  MAGI2 WILD-TYPE     75    112     25     39     10
D767V1, multiclass
        clus
vv       MAGI2 MUTATED MAGI2 WILD-TYPE
  CLUS_1             4              75
  CLUS_2            14             112
  CLUS_3             2              25
  CLUS_4             4              39
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGI2 MUTATED        5     10      2      4
  MAGI2 WILD-TYPE     66     66     32     59
D767V2, multiclass
        clus
vv       MAGI2 MUTATED MAGI2 WILD-TYPE
  CLUS_1             5              66
  CLUS_2            10              66
  CLUS_3             2              32
  CLUS_4             4              59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAGI2 MUTATED        1      4      8      2      9
  MAGI2 WILD-TYPE     15     58     43     63     46
D767V3, multiclass
        clus
vv       MAGI2 MUTATED MAGI2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             4              58
  CLUS_3             8              43
  CLUS_4             2              63
  CLUS_5             9              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGI2 MUTATED        8     10      2      4
  MAGI2 WILD-TYPE     90     34     48     53
D767V4, multiclass
        clus
vv       MAGI2 MUTATED MAGI2 WILD-TYPE
  CLUS_1             8              90
  CLUS_2            10              34
  CLUS_3             2              48
  CLUS_4             4              53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAGI2 MUTATED        9      0      5      3      5
  MAGI2 WILD-TYPE     53     59     35     34     54
D767V5, multiclass
        clus
vv       MAGI2 MUTATED MAGI2 WILD-TYPE
  CLUS_1             9              53
  CLUS_2             0              59
  CLUS_3             5              35
  CLUS_4             3              34
  CLUS_5             5              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAGI2 MUTATED        9      0     13
  MAGI2 WILD-TYPE     97     54     84
D767V6, multiclass
        clus
vv       MAGI2 MUTATED MAGI2 WILD-TYPE
  CLUS_1             9              97
  CLUS_2             0              54
  CLUS_3            13              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAGI2 MUTATED       18      3      5
  MAGI2 WILD-TYPE    105     92     66
D767V7, multiclass
        clus
vv       MAGI2 MUTATED MAGI2 WILD-TYPE
  CLUS_1            18             105
  CLUS_2             3              92
  CLUS_3             5              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAGI2 MUTATED       20      2      4
  MAGI2 WILD-TYPE    137     61     65
D767V8, multiclass
        clus
vv       MAGI2 MUTATED MAGI2 WILD-TYPE
  CLUS_1            20             137
  CLUS_2             2              61
  CLUS_3             4              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAGI2 MUTATED        5      2      4      4      0      1
  MAGI2 WILD-TYPE     28     17     55     35     16     44
D767V9, multiclass
        clus
vv       MAGI2 MUTATED MAGI2 WILD-TYPE
  CLUS_1             5              28
  CLUS_2             2              17
  CLUS_3             4              55
  CLUS_4             4              35
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAGI2 MUTATED        3      1      2      6      1      3
  MAGI2 WILD-TYPE     44     38     33     26     22     32
D767V10, multiclass
        clus
vv       MAGI2 MUTATED MAGI2 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             1              38
  CLUS_3             2              33
  CLUS_4             6              26
  CLUS_5             1              22
  CLUS_6             3              32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(768) Variable = C10ORF54 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C10ORF54 MUTATED        1      1      0      0      1
  C10ORF54 WILD-TYPE     78    125     27     43     11
D768V1, multiclass
        clus
vv       C10ORF54 MUTATED C10ORF54 WILD-TYPE
  CLUS_1                1                 78
  CLUS_2                1                125
  CLUS_3                0                 27
  CLUS_4                0                 43
  CLUS_5                1                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF54 MUTATED        0      2      0      0
  C10ORF54 WILD-TYPE     71     74     34     63
D768V2, multiclass
[1] "Remove cluster labels:" "C10ORF54 MUTATED"      
clus
  C10ORF54 MUTATED C10ORF54 WILD-TYPE 
                 2                242 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-6453         TCGA-BR-6454         TCGA-BR-6455 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-6456         TCGA-BR-6457         TCGA-BR-6458 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-6563         TCGA-BR-6564         TCGA-BR-6565 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-6566         TCGA-BR-6705         TCGA-BR-6706 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-6707         TCGA-BR-6710         TCGA-BR-6801 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-7196         TCGA-BR-7197         TCGA-BR-7707 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-7715         TCGA-BR-7716         TCGA-BR-7717 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-7722         TCGA-BR-7723         TCGA-BR-7851 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-7901         TCGA-BR-7957         TCGA-BR-7958 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-7959         TCGA-BR-8058         TCGA-BR-8059 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8077         TCGA-BR-8078         TCGA-BR-8080 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8081         TCGA-BR-8284         TCGA-BR-8286 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8289         TCGA-BR-8291         TCGA-BR-8295 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8296         TCGA-BR-8297         TCGA-BR-8360 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8361         TCGA-BR-8363         TCGA-BR-8364 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8365         TCGA-BR-8366         TCGA-BR-8367 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8368         TCGA-BR-8369         TCGA-BR-8370 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8371         TCGA-BR-8372         TCGA-BR-8373 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8380         TCGA-BR-8381         TCGA-BR-8382 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8384         TCGA-BR-8483         TCGA-BR-8484 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8485         TCGA-BR-8486         TCGA-BR-8487 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8588         TCGA-BR-8589         TCGA-BR-8590 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8591         TCGA-BR-8592         TCGA-BR-8676 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8677         TCGA-BR-8678         TCGA-BR-8679 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8680         TCGA-BR-8682         TCGA-BR-8683 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8686         TCGA-BR-8687         TCGA-BR-8690 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-A44T         TCGA-BR-A44U         TCGA-BR-A452 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-A453         TCGA-BR-A4CQ         TCGA-BR-A4CR 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-A4CS         TCGA-BR-A4IU         TCGA-BR-A4IV 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-A4IY         TCGA-BR-A4IZ         TCGA-BR-A4J1 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-A4J2         TCGA-BR-A4J4         TCGA-BR-A4J6 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-A4J7         TCGA-BR-A4J8         TCGA-BR-A4PD 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-A4PE         TCGA-BR-A4PF         TCGA-BR-A4QI 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-A4QL         TCGA-BR-A4QM         TCGA-CD-5798 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-5799         TCGA-CD-5800         TCGA-CD-5801 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-5802         TCGA-CD-5803         TCGA-CD-5804 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CD-8524         TCGA-CD-8525 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-8526         TCGA-CD-8527         TCGA-CD-8528 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-8529         TCGA-CD-8530         TCGA-CD-8531 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-8532         TCGA-CD-8534         TCGA-CD-8535 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-8536         TCGA-CD-A486         TCGA-CD-A487 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-A489         TCGA-CD-A48A         TCGA-CD-A48C 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-A4MG         TCGA-CD-A4MH         TCGA-CD-A4MI 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-A4MJ         TCGA-CG-4437         TCGA-CG-4441 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5726 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CG-5727         TCGA-CG-5728         TCGA-CG-5730 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CG-5732         TCGA-CG-5733         TCGA-CG-5734 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-5577         TCGA-D7-5578         TCGA-D7-5579 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-6518         TCGA-D7-6519         TCGA-D7-6520 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-6521         TCGA-D7-6522         TCGA-D7-6524 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-6525         TCGA-D7-6526         TCGA-D7-6527 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-6528         TCGA-D7-6815         TCGA-D7-6817 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-6818         TCGA-D7-6820         TCGA-D7-6822 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-8570         TCGA-D7-8572         TCGA-D7-8573 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-8574         TCGA-D7-8575         TCGA-D7-8576 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-8578         TCGA-D7-8579         TCGA-D7-A4YT 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-A4YU         TCGA-D7-A4YV         TCGA-D7-A4YX 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-A4YY         TCGA-D7-A4Z0         TCGA-EQ-5647 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-EQ-8122         TCGA-EQ-A4SO         TCGA-F1-6177 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-F1-6874         TCGA-F1-6875         TCGA-F1-A448 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-FP-7735         TCGA-FP-7829         TCGA-FP-7916 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-FP-7998         TCGA-FP-8099         TCGA-FP-8209 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-FP-8210         TCGA-FP-8211         TCGA-FP-8631 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-FP-A4BE         TCGA-FP-A4BF         TCGA-HF-7132 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HF-7133         TCGA-HF-7136         TCGA-HJ-7597 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-8243         TCGA-HU-8245         TCGA-HU-8249 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-8602         TCGA-HU-8604         TCGA-HU-8608 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-8610         TCGA-HU-A4G2         TCGA-HU-A4G3 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-A4G6         TCGA-HU-A4G8         TCGA-HU-A4G9 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-A4GC         TCGA-HU-A4GD         TCGA-HU-A4GF 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-A4GH         TCGA-HU-A4GN         TCGA-HU-A4GP 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-A4GQ         TCGA-HU-A4GT         TCGA-HU-A4GU 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-A4GX         TCGA-HU-A4GY         TCGA-HU-A4H0 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-A4H2         TCGA-HU-A4H4         TCGA-HU-A4H5 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-A4H6         TCGA-HU-A4H8         TCGA-HU-A4HD 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-IN-7806         TCGA-IN-7808         TCGA-IN-8462 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-IN-8663         TCGA-IP-7968 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C10ORF54 MUTATED        0      1      2      0      0
  C10ORF54 WILD-TYPE     16     61     49     65     55
D768V3, multiclass
        clus
vv       C10ORF54 MUTATED C10ORF54 WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                1                 61
  CLUS_3                2                 49
  CLUS_4                0                 65
  CLUS_5                0                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF54 MUTATED        1      1      1      0
  C10ORF54 WILD-TYPE     97     43     49     57
D768V4, multiclass
        clus
vv       C10ORF54 MUTATED C10ORF54 WILD-TYPE
  CLUS_1                1                 97
  CLUS_2                1                 43
  CLUS_3                1                 49
  CLUS_4                0                 57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C10ORF54 MUTATED        1      0      0      1      1
  C10ORF54 WILD-TYPE     61     59     40     36     58
D768V5, multiclass
        clus
vv       C10ORF54 MUTATED C10ORF54 WILD-TYPE
  CLUS_1                1                 61
  CLUS_2                0                 59
  CLUS_3                0                 40
  CLUS_4                1                 36
  CLUS_5                1                 58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C10ORF54 MUTATED        1      0      2
  C10ORF54 WILD-TYPE    105     54     95
D768V6, multiclass
        clus
vv       C10ORF54 MUTATED C10ORF54 WILD-TYPE
  CLUS_1                1                105
  CLUS_2                0                 54
  CLUS_3                2                 95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C10ORF54 MUTATED        1      1      1
  C10ORF54 WILD-TYPE    122     94     70
D768V7, multiclass
        clus
vv       C10ORF54 MUTATED C10ORF54 WILD-TYPE
  CLUS_1                1                122
  CLUS_2                1                 94
  CLUS_3                1                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C10ORF54 MUTATED        3      0      0
  C10ORF54 WILD-TYPE    154     63     69
D768V8, multiclass
        clus
vv       C10ORF54 MUTATED C10ORF54 WILD-TYPE
  CLUS_1                3                154
  CLUS_2                0                 63
  CLUS_3                0                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C10ORF54 MUTATED        0      1      0      0      0      0
  C10ORF54 WILD-TYPE     33     18     59     39     16     45
D768V9, multiclass
[1] "Remove cluster labels:" "C10ORF54 MUTATED"      
clus
  C10ORF54 MUTATED C10ORF54 WILD-TYPE 
                 1                210 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-6453         TCGA-BR-6454         TCGA-BR-6455 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-6456         TCGA-BR-6457         TCGA-BR-6458 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-6563         TCGA-BR-6564         TCGA-BR-6565 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-6566         TCGA-BR-6705         TCGA-BR-6706 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-6707         TCGA-BR-6710         TCGA-BR-6801 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-7196         TCGA-BR-7197         TCGA-BR-7707 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-7715         TCGA-BR-7717         TCGA-BR-7723 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-7851         TCGA-BR-7901         TCGA-BR-7957 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-7958         TCGA-BR-7959         TCGA-BR-8058 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8059         TCGA-BR-8077         TCGA-BR-8078 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8080         TCGA-BR-8284         TCGA-BR-8286 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8289         TCGA-BR-8291         TCGA-BR-8295 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8296         TCGA-BR-8297         TCGA-BR-8360 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8361         TCGA-BR-8363         TCGA-BR-8364 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8365         TCGA-BR-8368         TCGA-BR-8369 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8370         TCGA-BR-8371         TCGA-BR-8372 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8373         TCGA-BR-8380         TCGA-BR-8381 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8382         TCGA-BR-8384         TCGA-BR-8483 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8485         TCGA-BR-8486         TCGA-BR-8487 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8588         TCGA-BR-8590         TCGA-BR-8591 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8592         TCGA-BR-8676         TCGA-BR-8677 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8678         TCGA-BR-8679         TCGA-BR-8680 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8682         TCGA-BR-8683         TCGA-BR-8687 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8690         TCGA-BR-A44T         TCGA-BR-A452 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-A453         TCGA-BR-A4CQ         TCGA-BR-A4CR 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-A4CS         TCGA-BR-A4IU         TCGA-BR-A4IV 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-A4IY         TCGA-BR-A4IZ         TCGA-BR-A4J1 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-A4J6         TCGA-BR-A4J7         TCGA-BR-A4J8 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-A4PD         TCGA-BR-A4QI         TCGA-BR-A4QL 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-A4QM         TCGA-CD-5798         TCGA-CD-5799 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-5800         TCGA-CD-5801         TCGA-CD-5802 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-5803         TCGA-CD-5804         TCGA-CD-5813 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-8524         TCGA-CD-8525         TCGA-CD-8526 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-8527         TCGA-CD-8529         TCGA-CD-8530 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-8531         TCGA-CD-8532         TCGA-CD-8534 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-8535         TCGA-CD-8536         TCGA-CD-A486 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-A487         TCGA-CD-A489         TCGA-CD-A48C 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-A4MG         TCGA-CD-A4MH         TCGA-CD-A4MI 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CG-4437         TCGA-CG-4441         TCGA-CG-4449 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5726 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CG-5727         TCGA-CG-5728         TCGA-CG-5730 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CG-5732         TCGA-CG-5733         TCGA-CG-5734 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-5577         TCGA-D7-5578         TCGA-D7-5579 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-6518         TCGA-D7-6519         TCGA-D7-6520 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-6521         TCGA-D7-6522         TCGA-D7-6524 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-6525         TCGA-D7-6526         TCGA-D7-6527 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-6528         TCGA-D7-6815         TCGA-D7-6817 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-6818         TCGA-D7-6820         TCGA-D7-6822 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-8570         TCGA-D7-8572         TCGA-D7-8574 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-8575         TCGA-D7-8576         TCGA-D7-8578 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-8579         TCGA-D7-A4YT         TCGA-D7-A4YU 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-A4YV         TCGA-D7-A4YY         TCGA-D7-A4Z0 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-EQ-5647         TCGA-EQ-8122         TCGA-F1-6177 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-F1-6874         TCGA-F1-6875         TCGA-F1-A448 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-FP-7735         TCGA-FP-7829         TCGA-FP-7998 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-FP-8099         TCGA-FP-8209         TCGA-FP-8210 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-FP-8211         TCGA-FP-8631         TCGA-FP-A4BE 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HF-7132         TCGA-HF-7136         TCGA-HU-8243 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-8602         TCGA-HU-8604         TCGA-HU-8608 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-A4G3         TCGA-HU-A4G8         TCGA-HU-A4GC 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-A4GD         TCGA-HU-A4GF         TCGA-HU-A4GH 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-A4GN         TCGA-HU-A4GQ         TCGA-HU-A4GT 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-A4GX         TCGA-HU-A4GY         TCGA-HU-A4H2 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-A4H4         TCGA-HU-A4H5         TCGA-HU-A4H6 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-A4H8         TCGA-IN-7806         TCGA-IN-7808 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-IN-8462         TCGA-IN-8663         TCGA-IP-7968 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C10ORF54 MUTATED        0      0      0      1      0      0
  C10ORF54 WILD-TYPE     47     39     35     31     23     35
D768V10, multiclass
[1] "Remove cluster labels:" "C10ORF54 MUTATED"      
clus
  C10ORF54 MUTATED C10ORF54 WILD-TYPE 
                 1                210 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-BR-6452 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-6453         TCGA-BR-6454         TCGA-BR-6455 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-6456         TCGA-BR-6457         TCGA-BR-6458 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-6563         TCGA-BR-6564         TCGA-BR-6565 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-6566         TCGA-BR-6705         TCGA-BR-6706 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-6707         TCGA-BR-6710         TCGA-BR-6801 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-7196         TCGA-BR-7197         TCGA-BR-7707 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-7715         TCGA-BR-7717         TCGA-BR-7723 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-7851         TCGA-BR-7901         TCGA-BR-7957 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-7958         TCGA-BR-7959         TCGA-BR-8058 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8059         TCGA-BR-8077         TCGA-BR-8078 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8080         TCGA-BR-8284         TCGA-BR-8286 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8289         TCGA-BR-8291         TCGA-BR-8295 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8296         TCGA-BR-8297         TCGA-BR-8360 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8361         TCGA-BR-8363         TCGA-BR-8364 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8365         TCGA-BR-8368         TCGA-BR-8369 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8370         TCGA-BR-8371         TCGA-BR-8372 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8373         TCGA-BR-8380         TCGA-BR-8381 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8382         TCGA-BR-8384         TCGA-BR-8483 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8485         TCGA-BR-8486         TCGA-BR-8487 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8588         TCGA-BR-8590         TCGA-BR-8591 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8592         TCGA-BR-8676         TCGA-BR-8677 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8678         TCGA-BR-8679         TCGA-BR-8680 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8682         TCGA-BR-8683         TCGA-BR-8687 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-8690         TCGA-BR-A44T         TCGA-BR-A452 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-A453         TCGA-BR-A4CQ         TCGA-BR-A4CR 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-A4CS         TCGA-BR-A4IU         TCGA-BR-A4IV 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-A4IY         TCGA-BR-A4IZ         TCGA-BR-A4J1 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-A4J6         TCGA-BR-A4J7         TCGA-BR-A4J8 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-A4PD         TCGA-BR-A4QI         TCGA-BR-A4QL 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-BR-A4QM         TCGA-CD-5798         TCGA-CD-5799 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-5800         TCGA-CD-5801         TCGA-CD-5802 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-5803         TCGA-CD-5804         TCGA-CD-5813 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-8524         TCGA-CD-8525         TCGA-CD-8526 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-8527         TCGA-CD-8529         TCGA-CD-8530 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-8531         TCGA-CD-8532         TCGA-CD-8534 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-8535         TCGA-CD-8536         TCGA-CD-A486 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-A487         TCGA-CD-A489         TCGA-CD-A48C 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CD-A4MG         TCGA-CD-A4MH         TCGA-CD-A4MI 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CG-4437         TCGA-CG-4441         TCGA-CG-4449 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5726 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CG-5727         TCGA-CG-5728         TCGA-CG-5730 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-CG-5732         TCGA-CG-5733         TCGA-CG-5734 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-5577         TCGA-D7-5578         TCGA-D7-5579 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-6518         TCGA-D7-6519         TCGA-D7-6520 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-6521         TCGA-D7-6522         TCGA-D7-6524 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-6525         TCGA-D7-6526         TCGA-D7-6527 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-6528         TCGA-D7-6815         TCGA-D7-6817 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-6818         TCGA-D7-6820         TCGA-D7-6822 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-8570         TCGA-D7-8572         TCGA-D7-8574 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-8575         TCGA-D7-8576         TCGA-D7-8578 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-8579         TCGA-D7-A4YT         TCGA-D7-A4YU 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-D7-A4YV         TCGA-D7-A4YY         TCGA-D7-A4Z0 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-EQ-5647         TCGA-EQ-8122         TCGA-F1-6177 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-F1-6874         TCGA-F1-6875         TCGA-F1-A448 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-FP-7735         TCGA-FP-7829         TCGA-FP-7998 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-FP-8099         TCGA-FP-8209         TCGA-FP-8210 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-FP-8211         TCGA-FP-8631         TCGA-FP-A4BE 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HF-7132         TCGA-HF-7136         TCGA-HU-8243 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-8602         TCGA-HU-8604         TCGA-HU-8608 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-A4G3         TCGA-HU-A4G8         TCGA-HU-A4GC 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-A4GD         TCGA-HU-A4GF         TCGA-HU-A4GH 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-A4GN         TCGA-HU-A4GQ         TCGA-HU-A4GT 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-A4GX         TCGA-HU-A4GY         TCGA-HU-A4H2 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-A4H4         TCGA-HU-A4H5         TCGA-HU-A4H6 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-HU-A4H8         TCGA-IN-7806         TCGA-IN-7808 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 
        TCGA-IN-8462         TCGA-IN-8663         TCGA-IP-7968 
"C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" "C10ORF54 WILD-TYPE" 

Clustering(769) Variable = SETD2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SETD2 MUTATED        0     10      2      3      0
  SETD2 WILD-TYPE     79    116     25     40     12
D769V1, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             0              79
  CLUS_2            10             116
  CLUS_3             2              25
  CLUS_4             3              40
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        0      6      2      2
  SETD2 WILD-TYPE     71     70     32     61
D769V2, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             6              70
  CLUS_3             2              32
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SETD2 MUTATED        3      4      2      1      4
  SETD2 WILD-TYPE     13     58     49     64     51
D769V3, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             3              13
  CLUS_2             4              58
  CLUS_3             2              49
  CLUS_4             1              64
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD2 MUTATED        3      8      1      2
  SETD2 WILD-TYPE     95     36     49     55
D769V4, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             8              36
  CLUS_3             1              49
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SETD2 MUTATED        5      3      2      3      0
  SETD2 WILD-TYPE     57     56     38     34     59
D769V5, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             5              57
  CLUS_2             3              56
  CLUS_3             2              38
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED        4      1      8
  SETD2 WILD-TYPE    102     53     89
D769V6, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             1              53
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED       14      1      0
  SETD2 WILD-TYPE    109     94     71
D769V7, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            14             109
  CLUS_2             1              94
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SETD2 MUTATED       14      1      0
  SETD2 WILD-TYPE    143     62     69
D769V8, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1            14             143
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SETD2 MUTATED        2      0      4      1      0      1
  SETD2 WILD-TYPE     31     19     55     38     16     44
D769V9, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             0              19
  CLUS_3             4              55
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SETD2 MUTATED        3      1      3      1      0      0
  SETD2 WILD-TYPE     44     38     32     31     23     35
D769V10, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(770) Variable = APOA1BP MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APOA1BP MUTATED        1      4      1      0      0
  APOA1BP WILD-TYPE     78    122     26     43     12
D770V1, multiclass
        clus
vv       APOA1BP MUTATED APOA1BP WILD-TYPE
  CLUS_1               1                78
  CLUS_2               4               122
  CLUS_3               1                26
  CLUS_4               0                43
  CLUS_5               0                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APOA1BP MUTATED        0      2      1      1
  APOA1BP WILD-TYPE     71     74     33     62
D770V2, multiclass
        clus
vv       APOA1BP MUTATED APOA1BP WILD-TYPE
  CLUS_1               0                71
  CLUS_2               2                74
  CLUS_3               1                33
  CLUS_4               1                62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APOA1BP MUTATED        0      3      0      1      2
  APOA1BP WILD-TYPE     16     59     51     64     53
D770V3, multiclass
        clus
vv       APOA1BP MUTATED APOA1BP WILD-TYPE
  CLUS_1               0                16
  CLUS_2               3                59
  CLUS_3               0                51
  CLUS_4               1                64
  CLUS_5               2                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APOA1BP MUTATED        0      4      1      1
  APOA1BP WILD-TYPE     98     40     49     56
D770V4, multiclass
        clus
vv       APOA1BP MUTATED APOA1BP WILD-TYPE
  CLUS_1               0                98
  CLUS_2               4                40
  CLUS_3               1                49
  CLUS_4               1                56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APOA1BP MUTATED        3      2      0      1      0
  APOA1BP WILD-TYPE     59     57     40     36     59
D770V5, multiclass
        clus
vv       APOA1BP MUTATED APOA1BP WILD-TYPE
  CLUS_1               3                59
  CLUS_2               2                57
  CLUS_3               0                40
  CLUS_4               1                36
  CLUS_5               0                59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  APOA1BP MUTATED        2      2      2
  APOA1BP WILD-TYPE    104     52     95
D770V6, multiclass
        clus
vv       APOA1BP MUTATED APOA1BP WILD-TYPE
  CLUS_1               2               104
  CLUS_2               2                52
  CLUS_3               2                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  APOA1BP MUTATED        4      2      0
  APOA1BP WILD-TYPE    119     93     71
D770V7, multiclass
        clus
vv       APOA1BP MUTATED APOA1BP WILD-TYPE
  CLUS_1               4               119
  CLUS_2               2                93
  CLUS_3               0                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  APOA1BP MUTATED        4      2      0
  APOA1BP WILD-TYPE    153     61     69
D770V8, multiclass
        clus
vv       APOA1BP MUTATED APOA1BP WILD-TYPE
  CLUS_1               4               153
  CLUS_2               2                61
  CLUS_3               0                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  APOA1BP MUTATED        0      0      2      0      0      2
  APOA1BP WILD-TYPE     33     19     57     39     16     43
D770V9, multiclass
        clus
vv       APOA1BP MUTATED APOA1BP WILD-TYPE
  CLUS_1               0                33
  CLUS_2               0                19
  CLUS_3               2                57
  CLUS_4               0                39
  CLUS_5               0                16
  CLUS_6               2                43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  APOA1BP MUTATED        0      2      2      0      0      0
  APOA1BP WILD-TYPE     47     37     33     32     23     35
D770V10, multiclass
        clus
vv       APOA1BP MUTATED APOA1BP WILD-TYPE
  CLUS_1               0                47
  CLUS_2               2                37
  CLUS_3               2                33
  CLUS_4               0                32
  CLUS_5               0                23
  CLUS_6               0                35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(771) Variable = TRPV2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRPV2 MUTATED        0      7      2      1      0
  TRPV2 WILD-TYPE     79    119     25     42     12
D771V1, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             7             119
  CLUS_3             2              25
  CLUS_4             1              42
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPV2 MUTATED        1      4      2      1
  TRPV2 WILD-TYPE     70     72     32     62
D771V2, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             1              70
  CLUS_2             4              72
  CLUS_3             2              32
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRPV2 MUTATED        1      2      5      0      2
  TRPV2 WILD-TYPE     15     60     46     65     53
D771V3, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              60
  CLUS_3             5              46
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPV2 MUTATED        1      7      2      0
  TRPV2 WILD-TYPE     97     37     48     57
D771V4, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             7              37
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRPV2 MUTATED        4      0      2      3      0
  TRPV2 WILD-TYPE     58     59     38     34     59
D771V5, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             0              59
  CLUS_3             2              38
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPV2 MUTATED        3      0      6
  TRPV2 WILD-TYPE    103     54     91
D771V6, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             6              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPV2 MUTATED        8      2      0
  TRPV2 WILD-TYPE    115     93     71
D771V7, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             8             115
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPV2 MUTATED        9      1      0
  TRPV2 WILD-TYPE    148     62     69
D771V8, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             9             148
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRPV2 MUTATED        0      2      3      1      0      1
  TRPV2 WILD-TYPE     33     17     56     38     16     44
D771V9, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             2              17
  CLUS_3             3              56
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRPV2 MUTATED        1      1      3      1      1      0
  TRPV2 WILD-TYPE     46     38     32     31     22     35
D771V10, multiclass
        clus
vv       TRPV2 MUTATED TRPV2 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              38
  CLUS_3             3              32
  CLUS_4             1              31
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(772) Variable = PA2G4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PA2G4 MUTATED        0      4      0      0      0
  PA2G4 WILD-TYPE     79    122     27     43     12
D772V1, multiclass
        clus
vv       PA2G4 MUTATED PA2G4 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             4             122
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PA2G4 MUTATED        0      2      0      1
  PA2G4 WILD-TYPE     71     74     34     62
D772V2, multiclass
        clus
vv       PA2G4 MUTATED PA2G4 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             2              74
  CLUS_3             0              34
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PA2G4 MUTATED        1      2      1      0      0
  PA2G4 WILD-TYPE     15     60     50     65     55
D772V3, multiclass
        clus
vv       PA2G4 MUTATED PA2G4 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              60
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             0              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PA2G4 MUTATED        1      1      2      0
  PA2G4 WILD-TYPE     97     43     48     57
D772V4, multiclass
        clus
vv       PA2G4 MUTATED PA2G4 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             1              43
  CLUS_3             2              48
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PA2G4 MUTATED        2      0      1      0      0
  PA2G4 WILD-TYPE     60     59     39     37     59
D772V5, multiclass
        clus
vv       PA2G4 MUTATED PA2G4 WILD-TYPE
  CLUS_1             2              60
  CLUS_2             0              59
  CLUS_3             1              39
  CLUS_4             0              37
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PA2G4 MUTATED        1      0      2
  PA2G4 WILD-TYPE    105     54     95
D772V6, multiclass
        clus
vv       PA2G4 MUTATED PA2G4 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             0              54
  CLUS_3             2              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PA2G4 MUTATED        2      2      0
  PA2G4 WILD-TYPE    121     93     71
D772V7, multiclass
        clus
vv       PA2G4 MUTATED PA2G4 WILD-TYPE
  CLUS_1             2             121
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PA2G4 MUTATED        3      1      0
  PA2G4 WILD-TYPE    154     62     69
D772V8, multiclass
        clus
vv       PA2G4 MUTATED PA2G4 WILD-TYPE
  CLUS_1             3             154
  CLUS_2             1              62
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PA2G4 MUTATED        0      0      2      1      0      0
  PA2G4 WILD-TYPE     33     19     57     38     16     45
D772V9, multiclass
        clus
vv       PA2G4 MUTATED PA2G4 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              19
  CLUS_3             2              57
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PA2G4 MUTATED        0      0      2      0      1      0
  PA2G4 WILD-TYPE     47     39     33     32     22     35
D772V10, multiclass
        clus
vv       PA2G4 MUTATED PA2G4 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(773) Variable = EEA1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EEA1 MUTATED        0     11      0      1      0
  EEA1 WILD-TYPE     79    115     27     42     12
D773V1, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            0             79
  CLUS_2           11            115
  CLUS_3            0             27
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEA1 MUTATED        0      6      4      0
  EEA1 WILD-TYPE     71     70     30     63
D773V2, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            0             71
  CLUS_2            6             70
  CLUS_3            4             30
  CLUS_4            0             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EEA1 MUTATED        0      4      1      0      5
  EEA1 WILD-TYPE     16     58     50     65     50
D773V3, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            4             58
  CLUS_3            1             50
  CLUS_4            0             65
  CLUS_5            5             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEA1 MUTATED        2      5      2      1
  EEA1 WILD-TYPE     96     39     48     56
D773V4, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            5             39
  CLUS_3            2             48
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EEA1 MUTATED        8      0      1      0      0
  EEA1 WILD-TYPE     54     59     39     37     59
D773V5, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            8             54
  CLUS_2            0             59
  CLUS_3            1             39
  CLUS_4            0             37
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EEA1 MUTATED        2      0      7
  EEA1 WILD-TYPE    104     54     90
D773V6, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            2            104
  CLUS_2            0             54
  CLUS_3            7             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EEA1 MUTATED       11      1      0
  EEA1 WILD-TYPE    112     94     71
D773V7, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1           11            112
  CLUS_2            1             94
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EEA1 MUTATED       11      1      0
  EEA1 WILD-TYPE    146     62     69
D773V8, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1           11            146
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EEA1 MUTATED        3      0      3      3      0      0
  EEA1 WILD-TYPE     30     19     56     36     16     45
D773V9, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            3             30
  CLUS_2            0             19
  CLUS_3            3             56
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EEA1 MUTATED        2      0      2      3      2      0
  EEA1 WILD-TYPE     45     39     33     29     21     35
D773V10, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            2             33
  CLUS_4            3             29
  CLUS_5            2             21
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(774) Variable = BCKDHA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCKDHA MUTATED        1      6      1      0      0
  BCKDHA WILD-TYPE     78    120     26     43     12
D774V1, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              1               78
  CLUS_2              6              120
  CLUS_3              1               26
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCKDHA MUTATED        1      4      0      2
  BCKDHA WILD-TYPE     70     72     34     61
D774V2, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              1               70
  CLUS_2              4               72
  CLUS_3              0               34
  CLUS_4              2               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCKDHA MUTATED        0      4      2      0      2
  BCKDHA WILD-TYPE     16     58     49     65     53
D774V3, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              0               16
  CLUS_2              4               58
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCKDHA MUTATED        2      2      3      1
  BCKDHA WILD-TYPE     96     42     47     56
D774V4, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              2               96
  CLUS_2              2               42
  CLUS_3              3               47
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCKDHA MUTATED        2      1      0      2      2
  BCKDHA WILD-TYPE     60     58     40     35     57
D774V5, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              2               60
  CLUS_2              1               58
  CLUS_3              0               40
  CLUS_4              2               35
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCKDHA MUTATED        2      1      4
  BCKDHA WILD-TYPE    104     53     93
D774V6, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              2              104
  CLUS_2              1               53
  CLUS_3              4               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCKDHA MUTATED        6      1      2
  BCKDHA WILD-TYPE    117     94     69
D774V7, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              6              117
  CLUS_2              1               94
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCKDHA MUTATED        6      0      3
  BCKDHA WILD-TYPE    151     63     66
D774V8, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              6              151
  CLUS_2              0               63
  CLUS_3              3               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCKDHA MUTATED        2      1      2      0      1      0
  BCKDHA WILD-TYPE     31     18     57     39     15     45
D774V9, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              2               31
  CLUS_2              1               18
  CLUS_3              2               57
  CLUS_4              0               39
  CLUS_5              1               15
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCKDHA MUTATED        2      0      1      1      0      2
  BCKDHA WILD-TYPE     45     39     34     31     23     33
D774V10, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              2               45
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              1               31
  CLUS_5              0               23
  CLUS_6              2               33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(775) Variable = RGS12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS12 MUTATED        4     13      3      1      2
  RGS12 WILD-TYPE     75    113     24     42     10
D775V1, multiclass
        clus
vv       RGS12 MUTATED RGS12 WILD-TYPE
  CLUS_1             4              75
  CLUS_2            13             113
  CLUS_3             3              24
  CLUS_4             1              42
  CLUS_5             2              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS12 MUTATED        6     10      1      2
  RGS12 WILD-TYPE     65     66     33     61
D775V2, multiclass
        clus
vv       RGS12 MUTATED RGS12 WILD-TYPE
  CLUS_1             6              65
  CLUS_2            10              66
  CLUS_3             1              33
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS12 MUTATED        2      6      5      1      5
  RGS12 WILD-TYPE     14     56     46     64     50
D775V3, multiclass
        clus
vv       RGS12 MUTATED RGS12 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             6              56
  CLUS_3             5              46
  CLUS_4             1              64
  CLUS_5             5              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS12 MUTATED        4     13      1      1
  RGS12 WILD-TYPE     94     31     49     56
D775V4, multiclass
        clus
vv       RGS12 MUTATED RGS12 WILD-TYPE
  CLUS_1             4              94
  CLUS_2            13              31
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS12 MUTATED       11      1      2      3      4
  RGS12 WILD-TYPE     51     58     38     34     55
D775V5, multiclass
        clus
vv       RGS12 MUTATED RGS12 WILD-TYPE
  CLUS_1            11              51
  CLUS_2             1              58
  CLUS_3             2              38
  CLUS_4             3              34
  CLUS_5             4              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RGS12 MUTATED        5      1     15
  RGS12 WILD-TYPE    101     53     82
D775V6, multiclass
        clus
vv       RGS12 MUTATED RGS12 WILD-TYPE
  CLUS_1             5             101
  CLUS_2             1              53
  CLUS_3            15              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RGS12 MUTATED       15      2      6
  RGS12 WILD-TYPE    108     93     65
D775V7, multiclass
        clus
vv       RGS12 MUTATED RGS12 WILD-TYPE
  CLUS_1            15             108
  CLUS_2             2              93
  CLUS_3             6              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RGS12 MUTATED       17      3      3
  RGS12 WILD-TYPE    140     60     66
D775V8, multiclass
        clus
vv       RGS12 MUTATED RGS12 WILD-TYPE
  CLUS_1            17             140
  CLUS_2             3              60
  CLUS_3             3              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RGS12 MUTATED        2      2      5      6      2      2
  RGS12 WILD-TYPE     31     17     54     33     14     43
D775V9, multiclass
        clus
vv       RGS12 MUTATED RGS12 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             2              17
  CLUS_3             5              54
  CLUS_4             6              33
  CLUS_5             2              14
  CLUS_6             2              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RGS12 MUTATED        7      2      5      2      1      2
  RGS12 WILD-TYPE     40     37     30     30     22     33
D775V10, multiclass
        clus
vv       RGS12 MUTATED RGS12 WILD-TYPE
  CLUS_1             7              40
  CLUS_2             2              37
  CLUS_3             5              30
  CLUS_4             2              30
  CLUS_5             1              22
  CLUS_6             2              33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(776) Variable = DISP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DISP2 MUTATED        0     11      0      3      0
  DISP2 WILD-TYPE     79    115     27     40     12
D776V1, multiclass
        clus
vv       DISP2 MUTATED DISP2 WILD-TYPE
  CLUS_1             0              79
  CLUS_2            11             115
  CLUS_3             0              27
  CLUS_4             3              40
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DISP2 MUTATED        1     11      2      0
  DISP2 WILD-TYPE     70     65     32     63
D776V2, multiclass
        clus
vv       DISP2 MUTATED DISP2 WILD-TYPE
  CLUS_1             1              70
  CLUS_2            11              65
  CLUS_3             2              32
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DISP2 MUTATED        0      6      2      1      2
  DISP2 WILD-TYPE     16     56     49     64     53
D776V3, multiclass
        clus
vv       DISP2 MUTATED DISP2 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             6              56
  CLUS_3             2              49
  CLUS_4             1              64
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DISP2 MUTATED        0      4      5      2
  DISP2 WILD-TYPE     98     40     45     55
D776V4, multiclass
        clus
vv       DISP2 MUTATED DISP2 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             4              40
  CLUS_3             5              45
  CLUS_4             2              55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DISP2 MUTATED        9      1      2      1      0
  DISP2 WILD-TYPE     53     58     38     36     59
D776V5, multiclass
        clus
vv       DISP2 MUTATED DISP2 WILD-TYPE
  CLUS_1             9              53
  CLUS_2             1              58
  CLUS_3             2              38
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DISP2 MUTATED        3      1      9
  DISP2 WILD-TYPE    103     53     88
D776V6, multiclass
        clus
vv       DISP2 MUTATED DISP2 WILD-TYPE
  CLUS_1             3             103
  CLUS_2             1              53
  CLUS_3             9              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DISP2 MUTATED       13      2      0
  DISP2 WILD-TYPE    110     93     71
D776V7, multiclass
        clus
vv       DISP2 MUTATED DISP2 WILD-TYPE
  CLUS_1            13             110
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DISP2 MUTATED       14      0      1
  DISP2 WILD-TYPE    143     63     68
D776V8, multiclass
        clus
vv       DISP2 MUTATED DISP2 WILD-TYPE
  CLUS_1            14             143
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DISP2 MUTATED        2      1      5      5      0      0
  DISP2 WILD-TYPE     31     18     54     34     16     45
D776V9, multiclass
        clus
vv       DISP2 MUTATED DISP2 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              18
  CLUS_3             5              54
  CLUS_4             5              34
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DISP2 MUTATED        5      0      4      0      3      1
  DISP2 WILD-TYPE     42     39     31     32     20     34
D776V10, multiclass
        clus
vv       DISP2 MUTATED DISP2 WILD-TYPE
  CLUS_1             5              42
  CLUS_2             0              39
  CLUS_3             4              31
  CLUS_4             0              32
  CLUS_5             3              20
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(777) Variable = ZNF711 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF711 MUTATED        1      9      0      3      0
  ZNF711 WILD-TYPE     78    117     27     40     12
D777V1, multiclass
        clus
vv       ZNF711 MUTATED ZNF711 WILD-TYPE
  CLUS_1              1               78
  CLUS_2              9              117
  CLUS_3              0               27
  CLUS_4              3               40
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF711 MUTATED        1      6      2      0
  ZNF711 WILD-TYPE     70     70     32     63
D777V2, multiclass
        clus
vv       ZNF711 MUTATED ZNF711 WILD-TYPE
  CLUS_1              1               70
  CLUS_2              6               70
  CLUS_3              2               32
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF711 MUTATED        1      5      1      1      3
  ZNF711 WILD-TYPE     15     57     50     64     52
D777V3, multiclass
        clus
vv       ZNF711 MUTATED ZNF711 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              5               57
  CLUS_3              1               50
  CLUS_4              1               64
  CLUS_5              3               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF711 MUTATED        2      6      2      1
  ZNF711 WILD-TYPE     96     38     48     56
D777V4, multiclass
        clus
vv       ZNF711 MUTATED ZNF711 WILD-TYPE
  CLUS_1              2               96
  CLUS_2              6               38
  CLUS_3              2               48
  CLUS_4              1               56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF711 MUTATED        4      1      1      2      2
  ZNF711 WILD-TYPE     58     58     39     35     57
D777V5, multiclass
        clus
vv       ZNF711 MUTATED ZNF711 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              1               58
  CLUS_3              1               39
  CLUS_4              2               35
  CLUS_5              2               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF711 MUTATED        4      0      6
  ZNF711 WILD-TYPE    102     54     91
D777V6, multiclass
        clus
vv       ZNF711 MUTATED ZNF711 WILD-TYPE
  CLUS_1              4              102
  CLUS_2              0               54
  CLUS_3              6               91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF711 MUTATED       10      1      2
  ZNF711 WILD-TYPE    113     94     69
D777V7, multiclass
        clus
vv       ZNF711 MUTATED ZNF711 WILD-TYPE
  CLUS_1             10              113
  CLUS_2              1               94
  CLUS_3              2               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF711 MUTATED       12      1      0
  ZNF711 WILD-TYPE    145     62     69
D777V8, multiclass
        clus
vv       ZNF711 MUTATED ZNF711 WILD-TYPE
  CLUS_1             12              145
  CLUS_2              1               62
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF711 MUTATED        3      0      1      3      0      0
  ZNF711 WILD-TYPE     30     19     58     36     16     45
D777V9, multiclass
        clus
vv       ZNF711 MUTATED ZNF711 WILD-TYPE
  CLUS_1              3               30
  CLUS_2              0               19
  CLUS_3              1               58
  CLUS_4              3               36
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF711 MUTATED        3      0      1      2      1      0
  ZNF711 WILD-TYPE     44     39     34     30     22     35
D777V10, multiclass
        clus
vv       ZNF711 MUTATED ZNF711 WILD-TYPE
  CLUS_1              3               44
  CLUS_2              0               39
  CLUS_3              1               34
  CLUS_4              2               30
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(778) Variable = MAN1C1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAN1C1 MUTATED        0      5      2      0      0
  MAN1C1 WILD-TYPE     79    121     25     43     12
D778V1, multiclass
        clus
vv       MAN1C1 MUTATED MAN1C1 WILD-TYPE
  CLUS_1              0               79
  CLUS_2              5              121
  CLUS_3              2               25
  CLUS_4              0               43
  CLUS_5              0               12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAN1C1 MUTATED        0      5      2      0
  MAN1C1 WILD-TYPE     71     71     32     63
D778V2, multiclass
        clus
vv       MAN1C1 MUTATED MAN1C1 WILD-TYPE
  CLUS_1              0               71
  CLUS_2              5               71
  CLUS_3              2               32
  CLUS_4              0               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAN1C1 MUTATED        1      0      2      0      2
  MAN1C1 WILD-TYPE     15     62     49     65     53
D778V3, multiclass
        clus
vv       MAN1C1 MUTATED MAN1C1 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              0               62
  CLUS_3              2               49
  CLUS_4              0               65
  CLUS_5              2               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAN1C1 MUTATED        1      4      0      0
  MAN1C1 WILD-TYPE     97     40     50     57
D778V4, multiclass
        clus
vv       MAN1C1 MUTATED MAN1C1 WILD-TYPE
  CLUS_1              1               97
  CLUS_2              4               40
  CLUS_3              0               50
  CLUS_4              0               57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAN1C1 MUTATED        4      0      1      3      0
  MAN1C1 WILD-TYPE     58     59     39     34     59
D778V5, multiclass
        clus
vv       MAN1C1 MUTATED MAN1C1 WILD-TYPE
  CLUS_1              4               58
  CLUS_2              0               59
  CLUS_3              1               39
  CLUS_4              3               34
  CLUS_5              0               59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAN1C1 MUTATED        1      0      7
  MAN1C1 WILD-TYPE    105     54     90
D778V6, multiclass
        clus
vv       MAN1C1 MUTATED MAN1C1 WILD-TYPE
  CLUS_1              1              105
  CLUS_2              0               54
  CLUS_3              7               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAN1C1 MUTATED        8      0      0
  MAN1C1 WILD-TYPE    115     95     71
D778V7, multiclass
        clus
vv       MAN1C1 MUTATED MAN1C1 WILD-TYPE
  CLUS_1              8              115
  CLUS_2              0               95
  CLUS_3              0               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAN1C1 MUTATED        8      0      0
  MAN1C1 WILD-TYPE    149     63     69
D778V8, multiclass
        clus
vv       MAN1C1 MUTATED MAN1C1 WILD-TYPE
  CLUS_1              8              149
  CLUS_2              0               63
  CLUS_3              0               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAN1C1 MUTATED        1      2      3      1      0      0
  MAN1C1 WILD-TYPE     32     17     56     38     16     45
D778V9, multiclass
        clus
vv       MAN1C1 MUTATED MAN1C1 WILD-TYPE
  CLUS_1              1               32
  CLUS_2              2               17
  CLUS_3              3               56
  CLUS_4              1               38
  CLUS_5              0               16
  CLUS_6              0               45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAN1C1 MUTATED        4      0      2      0      1      0
  MAN1C1 WILD-TYPE     43     39     33     32     22     35
D778V10, multiclass
        clus
vv       MAN1C1 MUTATED MAN1C1 WILD-TYPE
  CLUS_1              4               43
  CLUS_2              0               39
  CLUS_3              2               33
  CLUS_4              0               32
  CLUS_5              1               22
  CLUS_6              0               35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(779) Variable = PHKG2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHKG2 MUTATED        0     10      1      0      1
  PHKG2 WILD-TYPE     79    116     26     43     11
D779V1, multiclass
        clus
vv       PHKG2 MUTATED PHKG2 WILD-TYPE
  CLUS_1             0              79
  CLUS_2            10             116
  CLUS_3             1              26
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHKG2 MUTATED        0      9      0      1
  PHKG2 WILD-TYPE     71     67     34     62
D779V2, multiclass
        clus
vv       PHKG2 MUTATED PHKG2 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             9              67
  CLUS_3             0              34
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHKG2 MUTATED        0      3      2      0      4
  PHKG2 WILD-TYPE     16     59     49     65     51
D779V3, multiclass
        clus
vv       PHKG2 MUTATED PHKG2 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              59
  CLUS_3             2              49
  CLUS_4             0              65
  CLUS_5             4              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHKG2 MUTATED        1      6      1      1
  PHKG2 WILD-TYPE     97     38     49     56
D779V4, multiclass
        clus
vv       PHKG2 MUTATED PHKG2 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             6              38
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHKG2 MUTATED        4      2      1      3      0
  PHKG2 WILD-TYPE     58     57     39     34     59
D779V5, multiclass
        clus
vv       PHKG2 MUTATED PHKG2 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             2              57
  CLUS_3             1              39
  CLUS_4             3              34
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHKG2 MUTATED        0      2      8
  PHKG2 WILD-TYPE    106     52     89
D779V6, multiclass
        clus
vv       PHKG2 MUTATED PHKG2 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             2              52
  CLUS_3             8              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHKG2 MUTATED        9      2      1
  PHKG2 WILD-TYPE    114     93     70
D779V7, multiclass
        clus
vv       PHKG2 MUTATED PHKG2 WILD-TYPE
  CLUS_1             9             114
  CLUS_2             2              93
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHKG2 MUTATED       10      2      0
  PHKG2 WILD-TYPE    147     61     69
D779V8, multiclass
        clus
vv       PHKG2 MUTATED PHKG2 WILD-TYPE
  CLUS_1            10             147
  CLUS_2             2              61
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHKG2 MUTATED        1      1      3      2      0      2
  PHKG2 WILD-TYPE     32     18     56     37     16     43
D779V9, multiclass
        clus
vv       PHKG2 MUTATED PHKG2 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             1              18
  CLUS_3             3              56
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             2              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHKG2 MUTATED        5      2      2      0      0      0
  PHKG2 WILD-TYPE     42     37     33     32     23     35
D779V10, multiclass
        clus
vv       PHKG2 MUTATED PHKG2 WILD-TYPE
  CLUS_1             5              42
  CLUS_2             2              37
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(780) Variable = PCCA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCCA MUTATED        0      6      1      1      0
  PCCA WILD-TYPE     79    120     26     42     12
D780V1, multiclass
        clus
vv       PCCA MUTATED PCCA WILD-TYPE
  CLUS_1            0             79
  CLUS_2            6            120
  CLUS_3            1             26
  CLUS_4            1             42
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCCA MUTATED        0      5      0      1
  PCCA WILD-TYPE     71     71     34     62
D780V2, multiclass
        clus
vv       PCCA MUTATED PCCA WILD-TYPE
  CLUS_1            0             71
  CLUS_2            5             71
  CLUS_3            0             34
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCCA MUTATED        2      3      2      0      1
  PCCA WILD-TYPE     14     59     49     65     54
D780V3, multiclass
        clus
vv       PCCA MUTATED PCCA WILD-TYPE
  CLUS_1            2             14
  CLUS_2            3             59
  CLUS_3            2             49
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCCA MUTATED        3      3      2      0
  PCCA WILD-TYPE     95     41     48     57
D780V4, multiclass
        clus
vv       PCCA MUTATED PCCA WILD-TYPE
  CLUS_1            3             95
  CLUS_2            3             41
  CLUS_3            2             48
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCCA MUTATED        4      0      1      1      0
  PCCA WILD-TYPE     58     59     39     36     59
D780V5, multiclass
        clus
vv       PCCA MUTATED PCCA WILD-TYPE
  CLUS_1            4             58
  CLUS_2            0             59
  CLUS_3            1             39
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PCCA MUTATED        1      0      5
  PCCA WILD-TYPE    105     54     92
D780V6, multiclass
        clus
vv       PCCA MUTATED PCCA WILD-TYPE
  CLUS_1            1            105
  CLUS_2            0             54
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PCCA MUTATED        8      0      0
  PCCA WILD-TYPE    115     95     71
D780V7, multiclass
        clus
vv       PCCA MUTATED PCCA WILD-TYPE
  CLUS_1            8            115
  CLUS_2            0             95
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PCCA MUTATED        8      0      0
  PCCA WILD-TYPE    149     63     69
D780V8, multiclass
        clus
vv       PCCA MUTATED PCCA WILD-TYPE
  CLUS_1            8            149
  CLUS_2            0             63
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PCCA MUTATED        1      1      4      0      0      0
  PCCA WILD-TYPE     32     18     55     39     16     45
D780V9, multiclass
        clus
vv       PCCA MUTATED PCCA WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            4             55
  CLUS_4            0             39
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PCCA MUTATED        2      0      4      0      0      0
  PCCA WILD-TYPE     45     39     31     32     23     35
D780V10, multiclass
        clus
vv       PCCA MUTATED PCCA WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            4             31
  CLUS_4            0             32
  CLUS_5            0             23
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(781) Variable = KDM3B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM3B MUTATED        2     12      1      1      1
  KDM3B WILD-TYPE     77    114     26     42     11
D781V1, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             2              77
  CLUS_2            12             114
  CLUS_3             1              26
  CLUS_4             1              42
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM3B MUTATED        1      8      1      4
  KDM3B WILD-TYPE     70     68     33     59
D781V2, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             1              70
  CLUS_2             8              68
  CLUS_3             1              33
  CLUS_4             4              59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM3B MUTATED        3      5      5      1      2
  KDM3B WILD-TYPE     13     57     46     64     53
D781V3, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             3              13
  CLUS_2             5              57
  CLUS_3             5              46
  CLUS_4             1              64
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM3B MUTATED        4      8      3      1
  KDM3B WILD-TYPE     94     36     47     56
D781V4, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             4              94
  CLUS_2             8              36
  CLUS_3             3              47
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM3B MUTATED       10      2      0      1      1
  KDM3B WILD-TYPE     52     57     40     36     58
D781V5, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1            10              52
  CLUS_2             2              57
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM3B MUTATED        3      2      9
  KDM3B WILD-TYPE    103     52     88
D781V6, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             3             103
  CLUS_2             2              52
  CLUS_3             9              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM3B MUTATED       12      3      2
  KDM3B WILD-TYPE    111     92     69
D781V7, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1            12             111
  CLUS_2             3              92
  CLUS_3             2              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM3B MUTATED       12      4      1
  KDM3B WILD-TYPE    145     59     68
D781V8, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1            12             145
  CLUS_2             4              59
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KDM3B MUTATED        2      1      6      2      0      1
  KDM3B WILD-TYPE     31     18     53     37     16     44
D781V9, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             2              31
  CLUS_2             1              18
  CLUS_3             6              53
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KDM3B MUTATED        2      2      5      2      1      0
  KDM3B WILD-TYPE     45     37     30     30     22     35
D781V10, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             2              45
  CLUS_2             2              37
  CLUS_3             5              30
  CLUS_4             2              30
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(782) Variable = FOXJ1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXJ1 MUTATED        0      5      0      0      0
  FOXJ1 WILD-TYPE     79    121     27     43     12
D782V1, multiclass
        clus
vv       FOXJ1 MUTATED FOXJ1 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             5             121
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXJ1 MUTATED        0      3      1      0
  FOXJ1 WILD-TYPE     71     73     33     63
D782V2, multiclass
        clus
vv       FOXJ1 MUTATED FOXJ1 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             3              73
  CLUS_3             1              33
  CLUS_4             0              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXJ1 MUTATED        0      1      1      0      1
  FOXJ1 WILD-TYPE     16     61     50     65     54
D782V3, multiclass
        clus
vv       FOXJ1 MUTATED FOXJ1 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              61
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             1              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXJ1 MUTATED        0      2      1      0
  FOXJ1 WILD-TYPE     98     42     49     57
D782V4, multiclass
        clus
vv       FOXJ1 MUTATED FOXJ1 WILD-TYPE
  CLUS_1             0              98
  CLUS_2             2              42
  CLUS_3             1              49
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXJ1 MUTATED        3      0      0      2      0
  FOXJ1 WILD-TYPE     59     59     40     35     59
D782V5, multiclass
        clus
vv       FOXJ1 MUTATED FOXJ1 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             2              35
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXJ1 MUTATED        0      0      5
  FOXJ1 WILD-TYPE    106     54     92
D782V6, multiclass
        clus
vv       FOXJ1 MUTATED FOXJ1 WILD-TYPE
  CLUS_1             0             106
  CLUS_2             0              54
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXJ1 MUTATED        5      0      0
  FOXJ1 WILD-TYPE    118     95     71
D782V7, multiclass
        clus
vv       FOXJ1 MUTATED FOXJ1 WILD-TYPE
  CLUS_1             5             118
  CLUS_2             0              95
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXJ1 MUTATED        5      0      0
  FOXJ1 WILD-TYPE    152     63     69
D782V8, multiclass
        clus
vv       FOXJ1 MUTATED FOXJ1 WILD-TYPE
  CLUS_1             5             152
  CLUS_2             0              63
  CLUS_3             0              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FOXJ1 MUTATED        0      0      2      2      0      0
  FOXJ1 WILD-TYPE     33     19     57     37     16     45
D782V9, multiclass
        clus
vv       FOXJ1 MUTATED FOXJ1 WILD-TYPE
  CLUS_1             0              33
  CLUS_2             0              19
  CLUS_3             2              57
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FOXJ1 MUTATED        3      0      0      0      1      0
  FOXJ1 WILD-TYPE     44     39     35     32     22     35
D782V10, multiclass
        clus
vv       FOXJ1 MUTATED FOXJ1 WILD-TYPE
  CLUS_1             3              44
  CLUS_2             0              39
  CLUS_3             0              35
  CLUS_4             0              32
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(783) Variable = GIPC3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIPC3 MUTATED        0      5      0      0      0
  GIPC3 WILD-TYPE     79    121     27     43     12
D783V1, multiclass
        clus
vv       GIPC3 MUTATED GIPC3 WILD-TYPE
  CLUS_1             0              79
  CLUS_2             5             121
  CLUS_3             0              27
  CLUS_4             0              43
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIPC3 MUTATED        0      4      1      1
  GIPC3 WILD-TYPE     71     72     33     62
D783V2, multiclass
        clus
vv       GIPC3 MUTATED GIPC3 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             4              72
  CLUS_3             1              33
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIPC3 MUTATED        0      1      3      0      0
  GIPC3 WILD-TYPE     16     61     48     65     55
D783V3, multiclass
        clus
vv       GIPC3 MUTATED GIPC3 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             1              61
  CLUS_3             3              48
  CLUS_4             0              65
  CLUS_5             0              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIPC3 MUTATED        1      1      1      1
  GIPC3 WILD-TYPE     97     43     49     56
D783V4, multiclass
        clus
vv       GIPC3 MUTATED GIPC3 WILD-TYPE
  CLUS_1             1              97
  CLUS_2             1              43
  CLUS_3             1              49
  CLUS_4             1              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIPC3 MUTATED        3      2      0      1      0
  GIPC3 WILD-TYPE     59     57     40     36     59
D783V5, multiclass
        clus
vv       GIPC3 MUTATED GIPC3 WILD-TYPE
  CLUS_1             3              59
  CLUS_2             2              57
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             0              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GIPC3 MUTATED        1      2      3
  GIPC3 WILD-TYPE    105     52     94
D783V6, multiclass
        clus
vv       GIPC3 MUTATED GIPC3 WILD-TYPE
  CLUS_1             1             105
  CLUS_2             2              52
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GIPC3 MUTATED        4      1      1
  GIPC3 WILD-TYPE    119     94     70
D783V7, multiclass
        clus
vv       GIPC3 MUTATED GIPC3 WILD-TYPE
  CLUS_1             4             119
  CLUS_2             1              94
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GIPC3 MUTATED        3      2      1
  GIPC3 WILD-TYPE    154     61     68
D783V8, multiclass
        clus
vv       GIPC3 MUTATED GIPC3 WILD-TYPE
  CLUS_1             3             154
  CLUS_2             2              61
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GIPC3 MUTATED        1      2      1      1      0      1
  GIPC3 WILD-TYPE     32     17     58     38     16     44
D783V9, multiclass
        clus
vv       GIPC3 MUTATED GIPC3 WILD-TYPE
  CLUS_1             1              32
  CLUS_2             2              17
  CLUS_3             1              58
  CLUS_4             1              38
  CLUS_5             0              16
  CLUS_6             1              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GIPC3 MUTATED        1      1      1      2      1      0
  GIPC3 WILD-TYPE     46     38     34     30     22     35
D783V10, multiclass
        clus
vv       GIPC3 MUTATED GIPC3 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             1              38
  CLUS_3             1              34
  CLUS_4             2              30
  CLUS_5             1              22
  CLUS_6             0              35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(784) Variable = EML3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EML3 MUTATED        0      6      1      2      1
  EML3 WILD-TYPE     79    120     26     41     11
D784V1, multiclass
        clus
vv       EML3 MUTATED EML3 WILD-TYPE
  CLUS_1            0             79
  CLUS_2            6            120
  CLUS_3            1             26
  CLUS_4            2             41
  CLUS_5            1             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EML3 MUTATED        2      4      3      1
  EML3 WILD-TYPE     69     72     31     62
D784V2, multiclass
        clus
vv       EML3 MUTATED EML3 WILD-TYPE
  CLUS_1            2             69
  CLUS_2            4             72
  CLUS_3            3             31
  CLUS_4            1             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EML3 MUTATED        1      2      3      0      1
  EML3 WILD-TYPE     15     60     48     65     54
D784V3, multiclass
        clus
vv       EML3 MUTATED EML3 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            2             60
  CLUS_3            3             48
  CLUS_4            0             65
  CLUS_5            1             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EML3 MUTATED        2      3      1      1
  EML3 WILD-TYPE     96     41     49     56
D784V4, multiclass
        clus
vv       EML3 MUTATED EML3 WILD-TYPE
  CLUS_1            2             96
  CLUS_2            3             41
  CLUS_3            1             49
  CLUS_4            1             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EML3 MUTATED        5      0      2      3      0
  EML3 WILD-TYPE     57     59     38     34     59
D784V5, multiclass
        clus
vv       EML3 MUTATED EML3 WILD-TYPE
  CLUS_1            5             57
  CLUS_2            0             59
  CLUS_3            2             38
  CLUS_4            3             34
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EML3 MUTATED        4      1      5
  EML3 WILD-TYPE    102     53     92
D784V6, multiclass
        clus
vv       EML3 MUTATED EML3 WILD-TYPE
  CLUS_1            4            102
  CLUS_2            1             53
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EML3 MUTATED        9      1      0
  EML3 WILD-TYPE    114     94     71
D784V7, multiclass
        clus
vv       EML3 MUTATED EML3 WILD-TYPE
  CLUS_1            9            114
  CLUS_2            1             94
  CLUS_3            0             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EML3 MUTATED        9      0      1
  EML3 WILD-TYPE    148     63     68
D784V8, multiclass
        clus
vv       EML3 MUTATED EML3 WILD-TYPE
  CLUS_1            9            148
  CLUS_2            0             63
  CLUS_3            1             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EML3 MUTATED        1      1      3      3      0      0
  EML3 WILD-TYPE     32     18     56     36     16     45
D784V9, multiclass
        clus
vv       EML3 MUTATED EML3 WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            3             56
  CLUS_4            3             36
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EML3 MUTATED        2      0      2      0      3      1
  EML3 WILD-TYPE     45     39     33     32     20     34
D784V10, multiclass
        clus
vv       EML3 MUTATED EML3 WILD-TYPE
  CLUS_1            2             45
  CLUS_2            0             39
  CLUS_3            2             33
  CLUS_4            0             32
  CLUS_5            3             20
  CLUS_6            1             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(785) Variable = DHX29 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX29 MUTATED        1      6      2      0      1
  DHX29 WILD-TYPE     78    120     25     43     11
D785V1, multiclass
        clus
vv       DHX29 MUTATED DHX29 WILD-TYPE
  CLUS_1             1              78
  CLUS_2             6             120
  CLUS_3             2              25
  CLUS_4             0              43
  CLUS_5             1              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX29 MUTATED        0      6      0      1
  DHX29 WILD-TYPE     71     70     34     62
D785V2, multiclass
        clus
vv       DHX29 MUTATED DHX29 WILD-TYPE
  CLUS_1             0              71
  CLUS_2             6              70
  CLUS_3             0              34
  CLUS_4             1              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX29 MUTATED        2      4      0      0      3
  DHX29 WILD-TYPE     14     58     51     65     52
D785V3, multiclass
        clus
vv       DHX29 MUTATED DHX29 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             4              58
  CLUS_3             0              51
  CLUS_4             0              65
  CLUS_5             3              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX29 MUTATED        3      2      4      0
  DHX29 WILD-TYPE     95     42     46     57
D785V4, multiclass
        clus
vv       DHX29 MUTATED DHX29 WILD-TYPE
  CLUS_1             3              95
  CLUS_2             2              42
  CLUS_3             4              46
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX29 MUTATED        4      1      1      2      1
  DHX29 WILD-TYPE     58     58     39     35     58
D785V5, multiclass
        clus
vv       DHX29 MUTATED DHX29 WILD-TYPE
  CLUS_1             4              58
  CLUS_2             1              58
  CLUS_3             1              39
  CLUS_4             2              35
  CLUS_5             1              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX29 MUTATED        4      0      5
  DHX29 WILD-TYPE    102     54     92
D785V6, multiclass
        clus
vv       DHX29 MUTATED DHX29 WILD-TYPE
  CLUS_1             4             102
  CLUS_2             0              54
  CLUS_3             5              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX29 MUTATED        9      0      1
  DHX29 WILD-TYPE    114     95     70
D785V7, multiclass
        clus
vv       DHX29 MUTATED DHX29 WILD-TYPE
  CLUS_1             9             114
  CLUS_2             0              95
  CLUS_3             1              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX29 MUTATED        9      0      1
  DHX29 WILD-TYPE    148     63     68
D785V8, multiclass
        clus
vv       DHX29 MUTATED DHX29 WILD-TYPE
  CLUS_1             9             148
  CLUS_2             0              63
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DHX29 MUTATED        2      2      3      0      0      0
  DHX29 WILD-TYPE     31     17     56     39     16     45
D785V9, multiclass
        clus
vv       DHX29 MUTATED DHX29 WILD-TYPE
  CLUS_1             2              31
  CLUS_2             2              17
  CLUS_3             3              56
  CLUS_4             0              39
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DHX29 MUTATED        4      0      2      0      0      1
  DHX29 WILD-TYPE     43     39     33     32     23     34
D785V10, multiclass
        clus
vv       DHX29 MUTATED DHX29 WILD-TYPE
  CLUS_1             4              43
  CLUS_2             0              39
  CLUS_3             2              33
  CLUS_4             0              32
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(786) Variable = TH1L MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TH1L MUTATED        1     10      0      0      0
  TH1L WILD-TYPE     78    116     27     43     12
D786V1, multiclass
        clus
vv       TH1L MUTATED TH1L WILD-TYPE
  CLUS_1            1             78
  CLUS_2           10            116
  CLUS_3            0             27
  CLUS_4            0             43
  CLUS_5            0             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TH1L MUTATED        0      4      2      3
  TH1L WILD-TYPE     71     72     32     60
D786V2, multiclass
        clus
vv       TH1L MUTATED TH1L WILD-TYPE
  CLUS_1            0             71
  CLUS_2            4             72
  CLUS_3            2             32
  CLUS_4            3             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TH1L MUTATED        1      3      1      1      3
  TH1L WILD-TYPE     15     59     50     64     52
D786V3, multiclass
        clus
vv       TH1L MUTATED TH1L WILD-TYPE
  CLUS_1            1             15
  CLUS_2            3             59
  CLUS_3            1             50
  CLUS_4            1             64
  CLUS_5            3             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TH1L MUTATED        2      4      3      0
  TH1L WILD-TYPE     96     40     47     57
D786V4, multiclass
        clus
vv       TH1L MUTATED TH1L WILD-TYPE
  CLUS_1            2             96
  CLUS_2            4             40
  CLUS_3            3             47
  CLUS_4            0             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TH1L MUTATED        9      0      0      1      0
  TH1L WILD-TYPE     53     59     40     36     59
D786V5, multiclass
        clus
vv       TH1L MUTATED TH1L WILD-TYPE
  CLUS_1            9             53
  CLUS_2            0             59
  CLUS_3            0             40
  CLUS_4            1             36
  CLUS_5            0             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TH1L MUTATED        5      0      5
  TH1L WILD-TYPE    101     54     92
D786V6, multiclass
        clus
vv       TH1L MUTATED TH1L WILD-TYPE
  CLUS_1            5            101
  CLUS_2            0             54
  CLUS_3            5             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TH1L MUTATED        9      0      2
  TH1L WILD-TYPE    114     95     69
D786V7, multiclass
        clus
vv       TH1L MUTATED TH1L WILD-TYPE
  CLUS_1            9            114
  CLUS_2            0             95
  CLUS_3            2             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TH1L MUTATED       10      1      0
  TH1L WILD-TYPE    147     62     69
D786V8, multiclass
        clus
vv       TH1L MUTATED TH1L WILD-TYPE
  CLUS_1           10            147
  CLUS_2            1             62
  CLUS_3            0             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TH1L MUTATED        1      1      4      1      0      0
  TH1L WILD-TYPE     32     18     55     38     16     45
D786V9, multiclass
        clus
vv       TH1L MUTATED TH1L WILD-TYPE
  CLUS_1            1             32
  CLUS_2            1             18
  CLUS_3            4             55
  CLUS_4            1             38
  CLUS_5            0             16
  CLUS_6            0             45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TH1L MUTATED        1      0      4      1      1      0
  TH1L WILD-TYPE     46     39     31     31     22     35
D786V10, multiclass
        clus
vv       TH1L MUTATED TH1L WILD-TYPE
  CLUS_1            1             46
  CLUS_2            0             39
  CLUS_3            4             31
  CLUS_4            1             31
  CLUS_5            1             22
  CLUS_6            0             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(787) Variable = PDE1B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDE1B MUTATED        2      1      1      2      0
  PDE1B WILD-TYPE     77    125     26     41     12
D787V1, multiclass
        clus
vv       PDE1B MUTATED PDE1B WILD-TYPE
  CLUS_1             2              77
  CLUS_2             1             125
  CLUS_3             1              26
  CLUS_4             2              41
  CLUS_5             0              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDE1B MUTATED        0      3      1      2
  PDE1B WILD-TYPE     71     73     33     61
D787V2, multiclass
        clus
vv       PDE1B MUTATED PDE1B WILD-TYPE
  CLUS_1             0              71
  CLUS_2             3              73
  CLUS_3             1              33
  CLUS_4             2              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDE1B MUTATED        0      3      1      0      2
  PDE1B WILD-TYPE     16     59     50     65     53
D787V3, multiclass
        clus
vv       PDE1B MUTATED PDE1B WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              59
  CLUS_3             1              50
  CLUS_4             0              65
  CLUS_5             2              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDE1B MUTATED        2      4      0      0
  PDE1B WILD-TYPE     96     40     50     57
D787V4, multiclass
        clus
vv       PDE1B MUTATED PDE1B WILD-TYPE
  CLUS_1             2              96
  CLUS_2             4              40
  CLUS_3             0              50
  CLUS_4             0              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDE1B MUTATED        3      0      0      1      2
  PDE1B WILD-TYPE     59     59     40     36     57
D787V5, multiclass
        clus
vv       PDE1B MUTATED PDE1B WILD-TYPE
  CLUS_1             3              59
  CLUS_2             0              59
  CLUS_3             0              40
  CLUS_4             1              36
  CLUS_5             2              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDE1B MUTATED        3      0      3
  PDE1B WILD-TYPE    103     54     94
D787V6, multiclass
        clus
vv       PDE1B MUTATED PDE1B WILD-TYPE
  CLUS_1             3             103
  CLUS_2             0              54
  CLUS_3             3              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDE1B MUTATED        4      2      0
  PDE1B WILD-TYPE    119     93     71
D787V7, multiclass
        clus
vv       PDE1B MUTATED PDE1B WILD-TYPE
  CLUS_1             4             119
  CLUS_2             2              93
  CLUS_3             0              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDE1B MUTATED        4      1      1
  PDE1B WILD-TYPE    153     62     68
D787V8, multiclass
        clus
vv       PDE1B MUTATED PDE1B WILD-TYPE
  CLUS_1             4             153
  CLUS_2             1              62
  CLUS_3             1              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PDE1B MUTATED        0      1      2      2      0      0
  PDE1B WILD-TYPE     33     18     57     37     16     45
D787V9, multiclass
        clus
vv       PDE1B MUTATED PDE1B WILD-TYPE
  CLUS_1             0              33
  CLUS_2             1              18
  CLUS_3             2              57
  CLUS_4             2              37
  CLUS_5             0              16
  CLUS_6             0              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PDE1B MUTATED        2      0      1      1      0      1
  PDE1B WILD-TYPE     45     39     34     31     23     34
D787V10, multiclass
        clus
vv       PDE1B MUTATED PDE1B WILD-TYPE
  CLUS_1             2              45
  CLUS_2             0              39
  CLUS_3             1              34
  CLUS_4             1              31
  CLUS_5             0              23
  CLUS_6             1              34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(788) Variable = C14ORF102 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF102 MUTATED        2      9      3      0      0
  C14ORF102 WILD-TYPE     77    117     24     43     12
D788V1, multiclass
        clus
vv       C14ORF102 MUTATED C14ORF102 WILD-TYPE
  CLUS_1                 2                  77
  CLUS_2                 9                 117
  CLUS_3                 3                  24
  CLUS_4                 0                  43
  CLUS_5                 0                  12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF102 MUTATED        1      6      0      2
  C14ORF102 WILD-TYPE     70     70     34     61
D788V2, multiclass
        clus
vv       C14ORF102 MUTATED C14ORF102 WILD-TYPE
  CLUS_1                 1                  70
  CLUS_2                 6                  70
  CLUS_3                 0                  34
  CLUS_4                 2                  61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF102 MUTATED        1      4      2      1      4
  C14ORF102 WILD-TYPE     15     58     49     64     51
D788V3, multiclass
        clus
vv       C14ORF102 MUTATED C14ORF102 WILD-TYPE
  CLUS_1                 1                  15
  CLUS_2                 4                  58
  CLUS_3                 2                  49
  CLUS_4                 1                  64
  CLUS_5                 4                  51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF102 MUTATED        3      5      3      1
  C14ORF102 WILD-TYPE     95     39     47     56
D788V4, multiclass
        clus
vv       C14ORF102 MUTATED C14ORF102 WILD-TYPE
  CLUS_1                 3                  95
  CLUS_2                 5                  39
  CLUS_3                 3                  47
  CLUS_4                 1                  56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF102 MUTATED        3      1      1      5      3
  C14ORF102 WILD-TYPE     59     58     39     32     56
D788V5, multiclass
        clus
vv       C14ORF102 MUTATED C14ORF102 WILD-TYPE
  CLUS_1                 3                  59
  CLUS_2                 1                  58
  CLUS_3                 1                  39
  CLUS_4                 5                  32
  CLUS_5                 3                  56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF102 MUTATED        3      1      9
  C14ORF102 WILD-TYPE    103     53     88
D788V6, multiclass
        clus
vv       C14ORF102 MUTATED C14ORF102 WILD-TYPE
  CLUS_1                 3                 103
  CLUS_2                 1                  53
  CLUS_3                 9                  88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF102 MUTATED       10      3      1
  C14ORF102 WILD-TYPE    113     92     70
D788V7, multiclass
        clus
vv       C14ORF102 MUTATED C14ORF102 WILD-TYPE
  CLUS_1                10                 113
  CLUS_2                 3                  92
  CLUS_3                 1                  70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C14ORF102 MUTATED       11      0      3
  C14ORF102 WILD-TYPE    146     63     66
D788V8, multiclass
        clus
vv       C14ORF102 MUTATED C14ORF102 WILD-TYPE
  CLUS_1                11                 146
  CLUS_2                 0                  63
  CLUS_3                 3                  66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C14ORF102 MUTATED        1      1      3      2      2      0
  C14ORF102 WILD-TYPE     32     18     56     37     14     45
D788V9, multiclass
        clus
vv       C14ORF102 MUTATED C14ORF102 WILD-TYPE
  CLUS_1                 1                  32
  CLUS_2                 1                  18
  CLUS_3                 3                  56
  CLUS_4                 2                  37
  CLUS_5                 2                  14
  CLUS_6                 0                  45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C14ORF102 MUTATED        4      0      2      0      1      2
  C14ORF102 WILD-TYPE     43     39     33     32     22     33
D788V10, multiclass
        clus
vv       C14ORF102 MUTATED C14ORF102 WILD-TYPE
  CLUS_1                 4                  43
  CLUS_2                 0                  39
  CLUS_3                 2                  33
  CLUS_4                 0                  32
  CLUS_5                 1                  22
  CLUS_6                 2                  33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
