[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  METHYLATION"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
                            Clinical feature             
DAYS_TO_DEATH_OR_LAST_FUP   "DAYS_TO_DEATH_OR_LAST_FUP"  
YEARS_TO_BIRTH              "YEARS_TO_BIRTH"             
PATHOLOGIC_STAGE            "PATHOLOGIC_STAGE"           
PATHOLOGY_T_STAGE           "PATHOLOGY_T_STAGE"          
PATHOLOGY_N_STAGE           "PATHOLOGY_N_STAGE"          
PATHOLOGY_M_STAGE           "PATHOLOGY_M_STAGE"          
GENDER                      "GENDER"                     
RADIATION_THERAPY           "RADIATION_THERAPY"          
KARNOFSKY_PERFORMANCE_SCORE "KARNOFSKY_PERFORMANCE_SCORE"
NUMBER_PACK_YEARS_SMOKED    "NUMBER_PACK_YEARS_SMOKED"   
RACE                        "RACE"                       
ETHNICITY                   "ETHNICITY"                  
                            Statistical test            Significant genes
DAYS_TO_DEATH_OR_LAST_FUP   "Cox regression test"       "N=0"            
YEARS_TO_BIRTH              "Spearman correlation test" "N=30"           
PATHOLOGIC_STAGE            "Kruskal-Wallis test"       "N=30"           
PATHOLOGY_T_STAGE           "Spearman correlation test" "N=30"           
PATHOLOGY_N_STAGE           "Spearman correlation test" "N=30"           
PATHOLOGY_M_STAGE           "Wilcoxon test"             "N=30"           
GENDER                      "Wilcoxon test"             "N=30"           
RADIATION_THERAPY           "Wilcoxon test"             "N=30"           
KARNOFSKY_PERFORMANCE_SCORE "Spearman correlation test" "N=30"           
NUMBER_PACK_YEARS_SMOKED    "Spearman correlation test" "N=30"           
RACE                        "Kruskal-Wallis test"       "N=30"           
ETHNICITY                   "Wilcoxon test"             "N=30"           
                            Associated with                  
DAYS_TO_DEATH_OR_LAST_FUP   " "                              
YEARS_TO_BIRTH              "older"                          
PATHOLOGIC_STAGE            " "                              
PATHOLOGY_T_STAGE           "higher stage"                   
PATHOLOGY_N_STAGE           "higher stage"                   
PATHOLOGY_M_STAGE           "class1"                         
GENDER                      "male"                           
RADIATION_THERAPY           "yes"                            
KARNOFSKY_PERFORMANCE_SCORE "higher score"                   
NUMBER_PACK_YEARS_SMOKED    "higher number_pack_years_smoked"
RACE                        " "                              
ETHNICITY                   "not hispanic or latino"         
                            &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP   " "                                                                                       
YEARS_TO_BIRTH              "N=1"                                                                                     
PATHOLOGIC_STAGE            " "                                                                                       
PATHOLOGY_T_STAGE           "N=30"                                                                                    
PATHOLOGY_N_STAGE           "N=29"                                                                                    
PATHOLOGY_M_STAGE           "N=30"                                                                                    
GENDER                      "N=30"                                                                                    
RADIATION_THERAPY           "N=30"                                                                                    
KARNOFSKY_PERFORMANCE_SCORE "N=30"                                                                                    
NUMBER_PACK_YEARS_SMOKED    "N=2"                                                                                     
RACE                        " "                                                                                       
ETHNICITY                   "N=30"                                                                                    
                            Associated with                        
DAYS_TO_DEATH_OR_LAST_FUP   " "                              " "   
YEARS_TO_BIRTH              "younger"                        "N=29"
PATHOLOGIC_STAGE            " "                              " "   
PATHOLOGY_T_STAGE           "lower stage"                    "N=0" 
PATHOLOGY_N_STAGE           "lower stage"                    "N=1" 
PATHOLOGY_M_STAGE           "class0"                         "N=0" 
GENDER                      "female"                         "N=0" 
RADIATION_THERAPY           "no"                             "N=0" 
KARNOFSKY_PERFORMANCE_SCORE "lower score"                    "N=0" 
NUMBER_PACK_YEARS_SMOKED    "lower number_pack_years_smoked" "N=28"
RACE                        " "                              " "   
ETHNICITY                   "hispanic or latino"             "N=0" 
[1] "vtyp==survival in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
