[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  RPPA_EXPR"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
                            Clinical feature             
DAYS_TO_DEATH_OR_LAST_FUP   "DAYS_TO_DEATH_OR_LAST_FUP"  
YEARS_TO_BIRTH              "YEARS_TO_BIRTH"             
PATHOLOGIC_STAGE            "PATHOLOGIC_STAGE"           
PATHOLOGY_T_STAGE           "PATHOLOGY_T_STAGE"          
PATHOLOGY_N_STAGE           "PATHOLOGY_N_STAGE"          
PATHOLOGY_M_STAGE           "PATHOLOGY_M_STAGE"          
RADIATION_THERAPY           "RADIATION_THERAPY"          
KARNOFSKY_PERFORMANCE_SCORE "KARNOFSKY_PERFORMANCE_SCORE"
RACE                        "RACE"                       
ETHNICITY                   "ETHNICITY"                  
                            Statistical test            Significant genes
DAYS_TO_DEATH_OR_LAST_FUP   "Cox regression test"       "N=0"            
YEARS_TO_BIRTH              "Spearman correlation test" "N=30"           
PATHOLOGIC_STAGE            "Kruskal-Wallis test"       "N=30"           
PATHOLOGY_T_STAGE           "Spearman correlation test" "N=14"           
PATHOLOGY_N_STAGE           "Spearman correlation test" "N=23"           
PATHOLOGY_M_STAGE           "Wilcoxon test"             "N=0"            
RADIATION_THERAPY           "Wilcoxon test"             "N=30"           
KARNOFSKY_PERFORMANCE_SCORE "Spearman correlation test" "N=0"            
RACE                        "Kruskal-Wallis test"       "N=0"            
ETHNICITY                   "Wilcoxon test"             "N=0"            
                            Associated with
DAYS_TO_DEATH_OR_LAST_FUP   " "            
YEARS_TO_BIRTH              "older"        
PATHOLOGIC_STAGE            " "            
PATHOLOGY_T_STAGE           "higher stage" 
PATHOLOGY_N_STAGE           "higher stage" 
PATHOLOGY_M_STAGE           " "            
RADIATION_THERAPY           "yes"          
KARNOFSKY_PERFORMANCE_SCORE " "            
RACE                        " "            
ETHNICITY                   " "            
                            &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP   " "                                                                                       
YEARS_TO_BIRTH              "N=18"                                                                                    
PATHOLOGIC_STAGE            " "                                                                                       
PATHOLOGY_T_STAGE           "N=9"                                                                                     
PATHOLOGY_N_STAGE           "N=12"                                                                                    
PATHOLOGY_M_STAGE           " "                                                                                       
RADIATION_THERAPY           "N=30"                                                                                    
KARNOFSKY_PERFORMANCE_SCORE " "                                                                                       
RACE                        " "                                                                                       
ETHNICITY                   " "                                                                                       
                            Associated with       
DAYS_TO_DEATH_OR_LAST_FUP   " "             " "   
YEARS_TO_BIRTH              "younger"       "N=12"
PATHOLOGIC_STAGE            " "             " "   
PATHOLOGY_T_STAGE           "lower stage"   "N=5" 
PATHOLOGY_N_STAGE           "lower stage"   "N=11"
PATHOLOGY_M_STAGE           " "             " "   
RADIATION_THERAPY           "no"            "N=0" 
KARNOFSKY_PERFORMANCE_SCORE " "             " "   
RACE                        " "             " "   
ETHNICITY                   " "             " "   
[1] "vtyp==survival in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
