Classifier directory BuiltClassifiers created under CHASM/BuiltClassifiers
/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_CHASM/broadinstitute.org/cancer.genome.analysis/10194/33/CHASM/snvGetTranscriptList
Generating set of 5000 Passenger Mutations
Passenger generation complete
Generating set of 5000 Null Mutations
Null generation complete
Retrieving features for training set from SNVBox
Data retrieval took 500.303788185s

Training set features stored in Train.arff
Retrieving features for null set from SNVBox
Data retrieval took 251.212687016s

Null set features stored in Null.arff
Training Random Forest Classifier
Trainset classification error is  12.96% of    9950 (kappa: 0.7394 )



Classisfier training time: 652.215180159

Classifier training complete
/xchip/cga/gdac-prod/tcga-gdac/jobResults/PREPROCESSCHASM/THCA-TP/19898939/mutationslist.arff
Data retrieval took 206.444192886s

Features retrieved for input mutations as .arff file
Output file generated
/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CHASM/THCA-TP/19898963
/xchip/cga/gdac-prod/tcga-gdac/jobResults/PREPROCESSCHASM/THCA-TP/19898939
