Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-3G-AB0O-01A-22D-A422-01	TCGA-3G-AB0Q-01A-11D-A422-01	TCGA-3G-AB0T-01A-11D-A422-01	TCGA-3G-AB14-01A-11D-A422-01	TCGA-3G-AB19-01A-21D-A422-01	TCGA-3Q-A9WF-01A-11D-A422-01	TCGA-3S-A8YW-01A-11D-A422-01	TCGA-3S-AAYX-01A-11D-A422-01	TCGA-3T-AA9L-01A-11D-A422-01	TCGA-4V-A9QI-01A-11D-A422-01	TCGA-4V-A9QJ-01A-11D-A422-01	TCGA-4V-A9QL-01A-11D-A422-01	TCGA-4V-A9QM-01A-11D-A422-01	TCGA-4V-A9QN-01A-11D-A422-01	TCGA-4V-A9QQ-01A-11D-A422-01	TCGA-4V-A9QR-01A-11D-A422-01	TCGA-4V-A9QS-01A-11D-A422-01	TCGA-4V-A9QT-01A-11D-A422-01	TCGA-4V-A9QU-01A-11D-A422-01	TCGA-4V-A9QW-01A-11D-A422-01	TCGA-4V-A9QX-01A-11D-A422-01	TCGA-4X-A9F9-01A-11D-A422-01	TCGA-4X-A9FA-01A-11D-A422-01	TCGA-4X-A9FB-01A-11D-A422-01	TCGA-4X-A9FC-01A-11D-A422-01	TCGA-4X-A9FD-01A-11D-A422-01	TCGA-5G-A9ZZ-01A-31D-A422-01	TCGA-5K-AAAP-01A-11D-A422-01	TCGA-5U-AB0D-01A-11D-A422-01	TCGA-5U-AB0E-01A-11D-A422-01	TCGA-5U-AB0F-01A-11D-A422-01	TCGA-5V-A9RR-01A-11D-A422-01	TCGA-X7-A8D6-01A-11D-A422-01	TCGA-X7-A8D7-01A-11D-A422-01	TCGA-X7-A8D8-01A-11D-A422-01	TCGA-X7-A8D9-01A-11D-A422-01	TCGA-X7-A8DB-01A-11D-A422-01	TCGA-X7-A8DC-01A-11D-A422-01	TCGA-X7-A8DD-01A-11D-A422-01	TCGA-X7-A8DE-01A-11D-A422-01	TCGA-X7-A8DF-01A-11D-A422-01	TCGA-X7-A8DG-01A-11D-A422-01	TCGA-X7-A8DI-01A-11D-A422-01	TCGA-X7-A8DJ-01A-11D-A422-01	TCGA-X7-A8M0-01A-11D-A422-01	TCGA-X7-A8M1-01A-11D-A422-01	TCGA-X7-A8M3-01A-11D-A422-01	TCGA-X7-A8M4-01A-11D-A422-01	TCGA-X7-A8M5-01A-11D-A422-01	TCGA-X7-A8M6-01A-11D-A422-01	TCGA-X7-A8M7-01A-11D-A422-01	TCGA-X7-A8M8-01A-11D-A422-01	TCGA-XH-A853-01A-11D-A422-01	TCGA-XM-A8R8-01A-11D-A422-01	TCGA-XM-A8R9-01A-31D-A422-01	TCGA-XM-A8RB-01A-11D-A422-01	TCGA-XM-A8RC-01A-11D-A422-01	TCGA-XM-A8RD-01A-11D-A422-01	TCGA-XM-A8RE-01A-11D-A422-01	TCGA-XM-A8RF-01A-11D-A422-01	TCGA-XM-A8RG-01A-11D-A422-01	TCGA-XM-A8RH-01A-11D-A422-01	TCGA-XM-A8RI-01A-12D-A422-01	TCGA-XM-A8RL-01A-11D-A422-01	TCGA-XM-AAZ1-01A-11D-A422-01	TCGA-XM-AAZ2-01A-11D-A422-01	TCGA-XM-AAZ3-01A-11D-A422-01	TCGA-XU-A92O-01A-11D-A422-01	TCGA-XU-A92Q-01A-11D-A422-01	TCGA-XU-A92R-01A-11D-A422-01	TCGA-XU-A92T-01A-11D-A422-01	TCGA-XU-A92U-01A-11D-A422-01	TCGA-XU-A92V-01A-11D-A422-01	TCGA-XU-A92W-01A-11D-A422-01	TCGA-XU-A92X-01A-11D-A422-01	TCGA-XU-A92Y-01A-11D-A422-01	TCGA-XU-A92Z-01A-11D-A422-01	TCGA-XU-A930-01A-11D-A422-01	TCGA-XU-A931-01A-11D-A422-01	TCGA-XU-A932-01A-11D-A422-01	TCGA-XU-A933-01A-11D-A422-01	TCGA-XU-A936-01A-11D-A427-01	TCGA-XU-AAXW-01A-11D-A427-01	TCGA-XU-AAXX-01A-11D-A427-01	TCGA-XU-AAXY-01A-11D-A427-01	TCGA-XU-AAXZ-01A-11D-A427-01	TCGA-XU-AAY0-01A-11D-A427-01	TCGA-XU-AAY1-01A-11D-A427-01	TCGA-YT-A95D-01A-11D-A427-01	TCGA-YT-A95E-01A-11D-A427-01	TCGA-YT-A95F-01A-11D-A427-01	TCGA-YT-A95G-01A-11D-A427-01	TCGA-YT-A95H-01A-11D-A427-01	TCGA-ZB-A961-01A-11D-A427-01	TCGA-ZB-A962-01A-11D-A427-01	TCGA-ZB-A963-01A-11D-A427-01	TCGA-ZB-A964-01A-11D-A427-01	TCGA-ZB-A965-01A-11D-A427-01	TCGA-ZB-A966-01A-11D-A427-01	TCGA-ZB-A969-01A-11D-A427-01	TCGA-ZB-A96A-01A-11D-A427-01	TCGA-ZB-A96B-01A-11D-A427-01	TCGA-ZB-A96C-01A-11D-A427-01	TCGA-ZB-A96D-01A-11D-A427-01	TCGA-ZB-A96E-01A-11D-A427-01	TCGA-ZB-A96F-01A-11D-A427-01	TCGA-ZB-A96G-01A-11D-A427-01	TCGA-ZB-A96H-01A-11D-A427-01	TCGA-ZB-A96I-01A-11D-A427-01	TCGA-ZB-A96K-01A-11D-A427-01	TCGA-ZB-A96L-01A-11D-A427-01	TCGA-ZB-A96M-01A-11D-A427-01	TCGA-ZB-A96O-01A-11D-A427-01	TCGA-ZB-A96P-01A-11D-A427-01	TCGA-ZB-A96Q-01A-11D-A427-01	TCGA-ZB-A96R-01A-11D-A427-01	TCGA-ZB-A96V-01A-11D-A427-01	TCGA-ZC-AAA7-01A-11D-A427-01	TCGA-ZC-AAAA-01A-11D-A427-01	TCGA-ZC-AAAF-01A-11D-A427-01	TCGA-ZC-AAAH-01A-11D-A427-01	TCGA-ZL-A9V6-01A-11D-A427-01	TCGA-ZT-A8OM-01A-11D-A427-01	
Deletion Peak  1	2q37.1  	chr2:219258895-237491936(probes 246592:257647)    	chr2:233033914-233048660(probes 254874:254875)    	chr2:233013156-233056620(probes 254867:254877)    	0.1088	     0.1088		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	
Deletion Peak  2	3p22.2  	chr3:1-85435613(probes 260557:309155)                	chr3:5290514-69823854(probes 262279:300408)          	chr3:1-9339643(probes 260557:264727)                  	0.038116	   0.038116		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	1	0	0	0	
Deletion Peak  3	6p25.2  	chr6:1-10745081(probes 570327:577191)                	chr6:2947784-2974744(probes 571813:571832)            	chr6:1329036-10746226(probes 570649:577192)          	0.019861	   0.019861		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	1	1	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	1	0	1	0	1	1	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	
Deletion Peak  4	6q21    	chr6:101844516-171115067(probes 625994:666861)    	chr6:110708325-110741610(probes 631265:631296)    	chr6:110717992-110741610(probes 631275:631296)    	0.1088	     0.1088		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	
Deletion Peak  5	7q36.3  	chr7:154685874-159138663(probes 746105:748224)    	chr7:157327529-158385117(probes 747792:748223)    	chr7:157721804-157727291(probes 748008:748009)    	0.20585	    0.19639		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  6	9p21.3  	chr9:21626574-22448737(probes 843131:843609)        	chr9:21959052-21977193(probes 843296:843297)        	chr9:21036540-23253276(probes 842691:844114)        	4.4308e-07	 4.4308e-07		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	
Deletion Peak  7	9q22.33 	chr9:1-141213431(probes 829803:897858)               	chr9:99658818-99787089(probes 872490:872512)        	chr9:99689341-99711778(probes 872497:872498)        	0.23403	    0.25655		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  8	10q26.3 	chr10:87808738-135534747(probes 949225:978764)    	chr10:131632952-132915201(probes 977685:978076)  	chr10:130854208-132916465(probes 977097:978078)  	0.10874	     0.1088		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  9	11q22.1 	chr11:100864426-101327187(probes 1033960:1034429)	chr11:100895339-101005685(probes 1033992:1034223)	chr11:100947347-100947735(probes 1034108:1034109)	0.18913	    0.19639		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	
Deletion Peak 10	19p13.11	chr19:16800553-21268054(probes 1407579:1408900)    	chr19:18637491-18782389(probes 1408360:1408409)    	chr19:18560093-18788973(probes 1408336:1408411)    	0.1088	     0.1088		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 11	22q12.1 	chr22:27070807-31323899(probes 1485764:1488636)    	chr22:29185506-29839846(probes 1487400:1487806)    	chr22:27833628-31229305(probes 1486596:1488582)    	0.003837	  0.0053635		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	
Deletion Peak 12	22q13.32	chr22:33832149-51304566(probes 1490294:1500017)    	chr22:48883082-49288257(probes 1499710:1499985)    	chr22:49102117-49103343(probes 1499848:1499849)    	0.065503	     0.1088		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	
Deletion Peak  1 - CN values	2q37.1  	chr2:219258895-237491936(probes 246592:257647)    	chr2:233033914-233048660(probes 254874:254875)    	chr2:233013156-233056620(probes 254867:254877)    	0.1088	     0.1088		Actual Copy Change Given	-0.0045695	0.015308	0	-0.0050447	-0.0008316	0.0030522	0.010564	0.0040243	0.0040243	0	-0.023977	0.001778	-0.00013862	-0.018216	-0.0025624	-0.015045	0.0052749	0.0043021	0.0037465	0.0048579	0.0094491	-0.0064578	-0.0008316	-0.020535	0.0114	0	0	-0.40119	-0.40329	0.01433	0.0034285	0	0.0019418	0.010146	0.0026357	0.0051359	0.0093098	0.0020805	0.011958	0.0040243	0.0070826	-0.00055444	0.0034687	0.0072217	0.0011093	0.0083351	0.024466	0.012084	0.0022193	0.0073609	0.04741	0.0011093	0.0022193	0.00083195	0.0026553	0.00597	0.012275	0.0027745	0.0093098	0	-0.0040162	0.0045757	0.0024969	0.0048579	0.011333	-0.46834	0.0013868	0.0044411	0.00097064	0.0035112	0.0033701	0.0023581	0.0037465	0.018167	0.019923	0.018322	-0.006505	0.083487	0	0.012046	0.012655	-0.093726	0.018243	0.07277	0.0028281	0.0023581	0.0027745	0.010285	0.0022193	0.0026357	0.0090312	0.0097276	-0.012438	-0.0067813	0.00076264	0.0017412	0.00049095	0.0022193	-0.0032152	-0.010646	0.0030522	0.0022193	-0.79369	0.0073609	0.0077783	0.014296	0.00458	0.00027728	0.0029092	0.0011832	-0.010727	0.0072592	0.003191	0.0068044	0.0038854	-0.017472	0.00069327	0.0043021	-0.10679	-0.03354	-0.00069303	0.0019418	0.0022193	
Deletion Peak  2 - CN values	3p22.2  	chr3:1-85435613(probes 260557:309155)                	chr3:5290514-69823854(probes 262279:300408)          	chr3:1-9339643(probes 260557:264727)                  	0.038116	   0.038116		Actual Copy Change Given	-0.002683	0.0041632	-0.0022168	-0.48212	-0.0038779	0.0015255	-0.51424	-0.016051	-0.0082224	-0.0036011	-0.034495	0.0039636	-0.00048352	-0.82567	0	-0.0094046	-0.013604	-0.0083005	0	0.00597	0.0036076	-0.0033243	-0.00085436	-0.021906	-0.0019399	-0.29049	0.00083195	0.0020805	0.017544	-0.24436	0.0020805	0.0015255	0.011958	0.0036076	0.001803	-0.0071958	0.0055529	0.0037465	0.00036186	-0.00069303	0.0063871	0.00097064	0.0010677	-0.0024938	0.0049969	0.00013863	-0.02068	0.003191	0	0.0073609	-0.0067796	0.00097064	0.00010111	-0.013953	0.00073284	-0.0033243	-0.14019	-0.036129	-0.0020304	0.0022193	0	0.0034644	-0.033269	-0.0048461	0	-0.00055444	0.0012481	-0.0012473	0.0013868	0.0024969	0	-0.0059522	-0.00027724	-0.037564	-0.21767	0.021386	-0.0041283	-0.2387	0.0013868	0.0040243	-0.012884	-0.095443	-0.0048461	-0.0023553	-0.00077815	-0.0072869	0.001803	0.0007468	0	0.0049969	-0.0020784	-0.10841	0.0062481	0	-0.00042606	-0.00047755	0.00049095	-0.0012473	-0.6796	0.010424	0.001803	0.0027745	0.0027745	0	0.00027728	0.0059358	0	0	-0.68626	0.0041438	-0.82122	0.0018403	0.012675	-0.017666	0	-0.020604	-0.0029091	-0.0018014	-0.11844	-0.21076	-0.0018014	0	0.0012481	
Deletion Peak  3 - CN values	6p25.2  	chr6:1-10745081(probes 570327:577191)                	chr6:2947784-2974744(probes 571813:571832)            	chr6:1329036-10746226(probes 570649:577192)          	0.019861	   0.019861		Actual Copy Change Given	-0.025103	0.0024969	0	-0.50335	-0.0030973	0.0026357	-0.53902	0.0071819	-0.0026322	-0.024798	0.046417	0.00035532	0.0024969	-0.82887	-0.08605	-0.26324	-0.076945	0.00041593	-0.000199	-1.1653	0.0091436	-0.015466	0.0039036	-0.022455	-0.0045695	-0.2862	-0.38313	0.0068044	-0.79953	-0.23863	-0.066922	0.0037465	0.00055459	0	0.0016642	-0.38557	0	-0.0099565	-0.045906	0.00036537	-0.054151	-0.00065974	-0.0011575	-0.0027225	0	0.001803	-0.019395	0.0022193	0	-0.0059915	-0.0059239	0.0011093	0	-0.011611	-0.0037	-0.0014185	-0.15316	-0.14324	-0.005814	-0.0027707	0.0033299	-0.0018959	-0.0034627	0.0044411	-0.00062118	-0.82609	0.0013868	0.0044411	-0.0013299	-0.2368	0.001427	0.0010481	-0.65006	-0.039196	-0.20486	-0.0011691	-0.71189	-0.24375	-0.68539	-0.13051	-0.0083005	-0.41657	-0.073816	-0.0019399	-0.0034409	0.0011093	0.0030522	0.0044411	0.0026357	0.0068044	0.00013863	-0.12927	0.0044411	-0.51352	-0.00064921	-0.057445	0.00090698	0.00041593	-0.0012516	-0.0040162	0.0033299	0.00055459	0.0029133	0.0026357	0.00013863	-0.32545	-0.01106	0.0030522	0.012093	0.0073414	-0.0020784	0.0036342	-0.0088526	0.0052749	0.0026357	-0.015329	0.010564	-0.56644	-0.11739	-0.017962	-0.0099565	0.0033299	-0.037203	
Deletion Peak  4 - CN values	6q21    	chr6:101844516-171115067(probes 625994:666861)    	chr6:110708325-110741610(probes 631265:631296)    	chr6:110717992-110741610(probes 631275:631296)    	0.1088	     0.1088		Actual Copy Change Given	0.0037465	0.0024969	0	-0.48821	-0.0030973	0.0026357	-0.50343	0.0071819	-0.0026322	-0.0098185	0.046417	0.0020199	0.0024969	-0.82887	-0.08605	-0.26324	-0.076945	0.00041593	-0.000199	-0.05883	-0.00092129	0	0.0044411	-0.022455	-0.0045695	-0.2862	-0.38313	0.001803	-0.78015	-0.23863	-0.066922	0.0037465	0.00055459	0	0.0016642	0.00097064	0	-0.0099565	-0.058048	0.00036537	-0.054151	0.001803	0.0044411	0.0033299	-0.31197	0.001803	-0.019395	0.0022193	0	0	-0.00041585	0.0011093	0	-0.013542	0	-0.0009301	-0.15316	-0.14129	-0.005814	-0.0027707	0.0033299	0.0015742	-0.0034627	0.0044411	-0.0098238	0	0.0013868	0.0044411	0.0040243	-0.0059522	0.001427	0.0010481	-0.0034147	-0.039196	-0.20486	-0.0011691	-0.010922	-0.22854	-0.65845	-0.0026322	-0.016567	-0.41657	0.0022193	-0.0019399	0.0018565	0.0011093	0.0030522	0.0068044	0.0026357	-0.00037099	0.00013863	-0.98962	0.0044411	0.00013863	0.010553	-0.0084768	0.00090698	0.00041593	-0.0012516	-0.0040162	0.0033299	0.00055459	0.0029133	0.0044411	0.00013863	-0.32545	-0.01106	0.0030522	-0.67903	0.0073414	-0.0020784	0.0050343	-0.0088526	0.0052749	0.0026357	-0.025756	-0.0035212	-0.56644	-0.11739	-0.017962	-0.0099565	0.0033299	-0.037203	
Deletion Peak  5 - CN values	7q36.3  	chr7:154685874-159138663(probes 746105:748224)    	chr7:157327529-158385117(probes 747792:748223)    	chr7:157721804-157727291(probes 748008:748009)    	0.20585	    0.19639		Actual Copy Change Given	0.039478	0.0027745	0.1616	0.019722	-0.00090436	-0.00013862	-0.52962	-0.017914	-0.0026609	0.061937	-0.082269	7.803e-05	0.00097064	0.051672	-0.00048129	0.23938	0.36297	-0.0037395	-0.0041546	-0.0015243	0	0.034818	0.0030522	0.015881	-0.0012473	0.3145	0.00097064	-0.0022168	0.011958	0.27395	0	-0.0027707	-0.0023553	-0.0022168	0.00097064	0	0.020763	0	-0.0013858	-0.004757	0.00458	0.030182	-0.00659	0.00083195	-0.32089	0	1.3709	0.0067002	0.0011093	0.058367	0.09275	-0.0037395	-0.0030475	0.0033299	0.0012876	0.085365	0.16304	0.14875	-0.00097017	0.00027728	0.0027745	-0.00022816	0.15532	-0.0027707	0.19079	-0.0008316	0.003191	0.0030522	0	-0.0011087	0.0011495	-0.0023553	0	0.018307	0.23612	0.20084	0.0097276	0.40294	0.64891	-0.0098185	-0.012576	-0.10361	0.13273	0.075991	0.090486	-0.0011087	-0.0025662	-0.00066566	0.0016642	0.00027728	0.0019418	0.066086	0.0029133	0.0041632	0.006516	0.00049286	0.0027108	0.00027728	0	0.00083195	0.0073609	0.00055459	0.0030522	-0.00069303	-0.00055444	0.3287	0.00083195	-0.00013862	0.69917	0.0010899	-0.0021733	0.0010733	0.031577	0.00049942	0.00069327	0.036935	-0.0029091	-0.002361	0.0051808	-0.00049476	0.041317	0.0038854	0.0012481	
Deletion Peak  6 - CN values	9p21.3  	chr9:21626574-22448737(probes 843131:843609)        	chr9:21959052-21977193(probes 843296:843297)        	chr9:21036540-23253276(probes 842691:844114)        	4.4308e-07	 4.4308e-07		Actual Copy Change Given	0.014051	0.0098669	0.16145	-0.0029694	0.00597	-0.0035543	-0.53946	-0.0026322	-0.0027707	0.062794	0.045566	-0.0023856	0.00013863	0.014274	-0.0025591	0.21683	0.15344	-0.0068203	-0.0041546	-0.0008316	0.0029133	0.026092	-0.0012473	0.055103	-0.0048461	0.0052195	-0.33918	0.0012481	-0.77346	0.041883	0.0030522	-0.0071958	-0.0047079	-0.00027724	-0.0044312	-0.00069303	-0.00097017	-0.0015243	-0.0019399	0.0016642	0.00041593	0.030029	-0.00055444	-0.0018014	-0.0053992	-0.00027724	-1.2929	-0.0031859	-0.0061198	0.04883	0.092025	-0.0042929	0.0016642	0.012237	0.0001782	-0.0041546	-0.068586	0	-0.0013858	-0.0024938	0.0062481	-0.002775	-0.0027707	0.00013863	0.18882	0.0011093	0	0.0015255	0.001803	-0.43485	-0.00065288	0.0016295	0.0040243	-0.045708	0.22746	-6.0453e-05	-0.0060904	0.39181	0.61589	0.11951	-0.0068685	-0.11231	0.12756	0.071822	0.082388	-0.0073339	-0.0063349	-0.0047079	-0.0051227	-0.0011087	-0.0029091	-0.0029401	-0.0018014	0.0068044	-0.98231	0.0014637	-0.0060156	-0.0023553	0.0044117	-0.90099	-0.0027707	-0.0030475	-0.0023553	-0.0019399	0.0027142	0.62984	-0.0019399	-0.0031859	-0.007338	-0.0037589	-1.2929	-0.0024565	0.020979	-0.0099565	-0.0020784	0.03369	-0.46419	-1.119	0.00035937	0.00075298	0.005138	-0.0022168	0	
Deletion Peak  7 - CN values	9q22.33 	chr9:1-141213431(probes 829803:897858)               	chr9:99658818-99787089(probes 872490:872512)        	chr9:99689341-99711778(probes 872497:872498)        	0.23403	    0.25655		Actual Copy Change Given	0.014051	-0.0069195	0.16145	-0.0029694	0.00597	-0.0035543	-0.53946	-0.0026322	-0.0026322	0.062794	0.045566	-0.0018619	0.00013863	0.014274	-0.0025591	0.21683	0.15344	0.001803	-0.0041546	-0.0008316	0.0029133	0.027497	-0.0012473	0.055103	-0.0048461	0.0052195	-0.0056757	-0.0022168	0.028341	0.041883	0.0030522	-0.0071958	-0.0047079	-0.00027724	-0.0044312	-0.00069303	-0.00097017	-0.0015243	-0.0019399	0.0016642	0.00041593	0.030029	-0.00055444	-0.0018014	-0.0053992	-0.00027724	-0.020219	-0.0031859	-0.0023553	0.04883	0.090036	-0.0042929	0.0016642	0.010889	0.0001782	-0.0041546	-0.068586	0	-0.0013858	0.0029133	0.0062481	-0.002775	-0.0027707	0.00013863	0.18882	-0.0028208	0	0.0015255	-0.0027707	0.22052	-0.00065288	-0.012438	0.0040243	-0.045708	0.19801	-6.0453e-05	-0.0060904	0.3743	0.61589	0.13346	-0.0068685	-0.11161	0.12756	0.071822	0.082388	-0.0073339	-0.0087503	-0.0047079	-0.0051227	-0.0011087	-0.0029091	-0.0044015	-0.0018014	-0.51123	0.00026706	0.0014637	-0.0060156	-0.0023553	0.0044117	0.020063	-0.0027707	-0.0030475	-0.0023553	-0.0019399	0.0027142	0.62984	-0.0019399	-0.0031859	-0.007338	-0.0037589	0.0049969	-0.002595	0.0282	-0.0099565	-0.0020784	0.027086	0.0049969	0	0.0012929	0.00075298	0.0077783	-0.0022168	0	
Deletion Peak  8 - CN values	10q26.3 	chr10:87808738-135534747(probes 949225:978764)    	chr10:131632952-132915201(probes 977685:978076)  	chr10:130854208-132916465(probes 977097:978078)  	0.10874	     0.1088		Actual Copy Change Given	0.014749	-0.013916	0.0038854	-0.010292	0.0029976	0.00055459	0.017684	0	-0.0045224	-0.0060904	-0.027261	0.0014649	-0.0031859	-0.81548	-0.0065702	0.16793	0	0.0062481	0.0011093	0.0054139	0.0037465	-0.0061256	-0.0025411	0.010051	0.0030522	0.0083351	0.0016642	0.00027728	0.0060425	-0.00013862	0.0033299	-0.0067145	0.00041593	0.0013868	-0.022902	-0.0029091	-0.00027724	-0.0087146	-0.0018014	-0.0041546	-0.028954	-0.0023553	-0.0055966	-0.0027136	-0.29981	-0.00069303	-0.016922	-0.00027724	-0.0036011	-0.0055948	-0.0071958	-0.0042929	-0.00042641	-0.0069195	-0.0014848	-0.033295	-0.001722	-0.0015243	-0.021186	-0.005261	-0.89721	-0.0033713	-0.0024938	-0.0071958	-0.012102	-0.0018014	-0.0045948	-0.0056757	-0.0024938	-0.0013858	-0.00079146	-0.00041585	-0.65062	0.018447	-0.00069303	-0.0092309	0	-0.24472	-0.01106	-0.0033243	0.69129	0	-0.022058	-0.006505	-0.0079711	-0.011205	-0.007509	-0.0039844	-0.0087146	-0.018324	-0.00027724	0	0	0.001849	-0.0037462	0.0029904	-0.0074143	-0.00027724	0.0088626	-0.89756	0.0012481	-0.0016782	0.0015255	-0.0070584	0.0016642	-0.027021	0.0043021	-0.0022949	-0.001944	0.00095122	0.01433	-0.005569	-0.00013862	-0.0031859	-0.00097017	-0.018216	-0.00055444	-0.0044312	0.0050418	0	-0.0018014	-0.0037333	-0.00069303	
Deletion Peak  9 - CN values	11q22.1 	chr11:100864426-101327187(probes 1033960:1034429)	chr11:100895339-101005685(probes 1033992:1034223)	chr11:100947347-100947735(probes 1034108:1034109)	0.18913	    0.19639		Actual Copy Change Given	-0.014916	-0.0015243	-0.061152	-0.010982	0.0019418	-0.0047079	0.010842	-0.011473	-0.0073959	-0.013386	-0.0014814	-0.011305	-0.0065738	-0.82182	-0.0035281	-0.032314	-0.017254	0.0041632	-0.0077482	-0.0022168	-0.0038779	-0.012989	-0.005261	-0.030325	-0.0059522	-0.28869	-0.0036011	-0.0034118	0	-0.26035	-0.0026322	-0.0068376	-0.006505	-0.0060904	-0.0063668	-0.0016629	-0.0063668	-0.0037395	-0.0078077	-0.0049844	-0.0016629	-0.0080244	-0.0071958	-0.0081181	-0.0027707	-0.0036536	-0.024742	-0.0037395	-0.0042524	-0.0053992	-0.0058709	-0.0063668	-0.0018014	0.00069327	-0.0053598	-0.013127	-0.16753	-0.037626	-0.0051227	-0.0014113	-0.0029091	-0.0083048	0	-0.0054804	-0.01457	0.00027728	-0.0024167	-0.0030475	-0.0033243	-0.0013842	-0.00037569	-0.0024938	-0.0021866	0.011603	-0.22342	-0.0064271	0.0040243	-0.2446	-0.0069195	-0.0067813	-0.0049844	0.19019	-0.016567	-0.012989	-0.011282	-0.0091286	-0.0073339	-0.0091286	-0.0033243	-0.0012473	-0.00097017	-0.00013862	-0.0070599	0.0093098	-0.0084487	-0.003386	-0.0020034	-0.0020784	0.00085594	0.010353	-0.0040162	-0.0053992	0.0034687	-0.0036826	-0.0013858	-0.006539	-0.0045695	0	-0.00097431	-0.0040356	0.0044411	-0.0060532	-0.024114	-0.0033243	-0.0038779	-0.020549	-0.0020453	-0.0055375	-0.12221	0.056507	-0.038696	-0.00021529	-0.0073339	
Deletion Peak 10 - CN values	19p13.11	chr19:16800553-21268054(probes 1407579:1408900)    	chr19:18637491-18782389(probes 1408360:1408409)    	chr19:18560093-18788973(probes 1408336:1408411)    	0.1088	     0.1088		Actual Copy Change Given	-0.016704	-0.011473	-0.013264	-0.029644	0.046133	-0.017116	-0.32269	-0.011473	-0.0096806	0.00597	0.44088	-0.0040767	0	0.076854	-0.014293	0.1649	-0.0048461	-0.024935	-0.015879	-0.0069664	-0.015879	-0.016979	-0.00041585	0.0036225	-0.015329	0.0068044	-0.020687	-0.00055444	-0.74907	-0.023566	-0.0008316	-0.015604	-0.011887	-0.017529	-0.014605	-0.018078	-0.016841	-0.01037	-0.022881	-0.0094046	-0.014778	0.023145	-0.0098185	-0.01296	-0.010922	-0.0055375	1.2821	-0.018353	-0.0052265	-0.016017	0.02511	-0.016017	-0.010094	-0.0069195	-0.0039767	-0.010646	-0.05011	-0.020687	-0.013677	0.01091	-0.0045695	-0.0074763	-0.0023553	-0.010094	-0.012917	0.0063871	-0.0015243	-0.0042929	-0.0011087	-0.0047079	-0.0025014	-0.0044312	-0.00041585	-0.0035379	-0.027124	-0.0043532	0.022304	0.30665	-0.032723	-0.0041546	0.033127	-0.13277	-0.0020784	0.05281	0.069437	-0.0096806	-0.0069195	-0.0094046	-0.017803	-0.014778	-0.010508	-0.027124	0.00022203	0.040468	-0.029868	0.0032681	-0.0082258	0	-0.0001679	-0.83114	-0.0042929	-0.0083005	0.0024969	-0.0041546	-0.005261	0	-0.011473	0.013074	-0.059542	-0.0087339	-0.77294	-0.0049472	-0.0094046	-0.011335	-0.0053992	0.018663	0.011818	-0.023292	0	-0.0087932	-0.0060904	0.00597	0.0048579	
Deletion Peak 11 - CN values	22q12.1 	chr22:27070807-31323899(probes 1485764:1488636)    	chr22:29185506-29839846(probes 1487400:1487806)    	chr22:27833628-31229305(probes 1486596:1488582)    	0.003837	  0.0053635		Actual Copy Change Given	-0.0053992	-0.0079488	-0.0029091	-0.038093	-0.78644	-0.073209	-0.57299	-0.0053992	0.0016642	-0.0023553	-0.14772	-0.0057387	-0.0062286	-0.79076	-0.021849	0.17573	0.0023581	-0.019314	-0.0073339	-0.0023553	-0.18229	-0.01608	-0.0027707	-0.036115	0	0.31691	-0.02151	-0.42386	-0.35544	-0.038047	-0.22982	-0.016567	-0.0045695	-0.0033243	-0.0026322	-0.39185	-0.006505	-0.0048461	-0.0089906	0.0020805	-0.007472	-0.012024	0.0034687	-0.0008316	-0.029857	-0.0029091	1.3532	0.0015255	-0.0066432	-0.012162	0.042024	-0.0044312	0.0041632	-0.019726	-0.040849	-0.0048461	-0.18916	-0.0089906	-0.0095426	-0.75849	0.0086135	-0.0066474	0.0048579	-0.0080244	-0.0057765	-0.78328	0	-0.0034627	-0.0033243	-0.022744	-0.0016227	-0.0029091	-0.62331	0.017887	0.1786	0.0036859	0.019083	0.043015	-0.029584	-0.0078863	0.034536	-0.11971	-0.027904	0.065226	-0.018163	-0.0033243	-0.07881	-0.0059522	-0.025209	-0.0015243	-0.0098185	-0.017022	-0.010646	0.012795	-0.031369	-0.17581	-0.014291	-0.0040162	0.023396	0.045141	-0.14219	-0.0031859	-0.0094046	-0.005814	0.00027728	-0.005848	-0.036129	0.0022193	-0.052536	-0.43487	-0.78707	-0.010747	-0.0040162	-0.00097017	-0.01384	-0.03286	0.022024	-0.011473	-0.0082863	-0.0014409	-0.0027908	-0.00041585	-0.1526	
Deletion Peak 12 - CN values	22q13.32	chr22:33832149-51304566(probes 1490294:1500017)    	chr22:48883082-49288257(probes 1499710:1499985)    	chr22:49102117-49103343(probes 1499848:1499849)    	0.065503	     0.1088		Actual Copy Change Given	-0.0053992	0.0090312	-0.0029091	-0.045377	-0.78471	-0.073209	-0.57299	-0.0053992	0.0016642	-0.0023553	-0.14772	0.0073	-0.0062286	-0.79076	-0.017594	0.17573	0.0023581	-0.019314	-0.0073339	-0.0023553	-0.13949	-0.020241	-0.0027707	-0.036115	0	0.31691	-0.02151	0.035524	-0.35544	-0.033814	-0.22982	-0.016567	-0.0045695	-0.0033243	-0.0026322	-0.041838	-0.006505	-0.0048461	-0.0089906	0.00099916	-0.007472	-0.012024	0.0034687	-0.0008316	-0.029857	-0.0029091	1.3532	0.0015255	-0.0066432	-0.012162	0.042024	-0.0044312	0.0041632	-0.019726	-0.040849	-0.0048461	-0.18916	-0.0089906	-0.0095426	0.00069327	0.0086135	-0.0066474	-0.0016767	-0.0080244	0.046207	0.0030522	0	-0.0034627	-0.0033243	-0.022744	-0.0016227	-0.0029091	0.016845	0.017887	0.18404	0.0036859	-0.69634	0.04228	-0.029584	-0.0078863	0.034536	-0.11971	-0.015604	0.065226	-0.018163	-0.0033243	-0.0123	-0.0059522	-0.025209	-0.0015243	-0.0098185	-0.010646	-0.010646	0.012795	-0.035914	-0.17581	-0.014291	-0.0040162	0.020429	-0.89235	-0.14129	-0.0031859	-0.0094046	-0.005814	0.00027728	-0.023358	-0.036129	0.0022193	-0.052536	-0.0095619	-0.82426	-0.010747	-0.0040162	-0.034684	0.0015255	-0.03286	0.022024	-0.011473	-0.016247	-0.0014409	0.0066653	-0.00041585	-0.1526	
