[1] "ofn"       "-oTUCS-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/UCS-TP/20140950/UCS-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCS-TP/19782451/transformed.cor.cli.txt"

nPatients in clinical file=57, in cluster file=56, common to both=56
[1] "Reduce the number of clustering variables from 82 to 79."
[1] 79 56
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               24                32 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               24                32 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               31                25 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               31                25 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               23                33 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               23                33 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               21                35 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               21                35 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               12                44 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               12                44 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               23                33 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               23                33 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                9                47 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                9                47 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                3                53 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                3                53 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               23                33 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               23                33 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                8                48 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                8                48 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               30                26 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               30                26 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               27                29 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               27                29 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               21                35 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               21                35 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               17                39 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               17                39 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               19                37 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               19                37 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               30                26 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               30                26 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                6                50 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                6                50 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                21                 35 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                21                 35 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                17                 39 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                17                 39 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 5                 51 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 5                 51 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 7                 49 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 7                 49 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                22                 34 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                22                 34 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                11                 45 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                11                 45 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                15                 41 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                15                 41 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 7                 49 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 7                 49 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 4                 52 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 4                 52 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                10                 46 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                10                 46 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 6                 50 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 6                 50 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 9                 47 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 9                 47 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                18                 38 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                18                 38 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                18                 38 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                18                 38 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                14                 42 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                14                 42 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                24                 32 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                24                 32 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                28                 28 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                28                 28 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                37                 19 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                37                 19 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                44                 12 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                44                 12 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                18                 38 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                18                 38 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 8                 48 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 8                 48 
[1] "XP GAIN MUTATION ANALYSIS"
[1] 3
  XP GAIN MUTATED XP GAIN WILD-TYPE 
               18                38 
  XP GAIN MUTATED XP GAIN WILD-TYPE 
               18                38 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               15                41 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               15                41 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                9                47 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                9                47 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                9                47 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                9                47 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               20                36 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               20                36 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               14                42 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               14                42 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               31                25 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               31                25 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               33                23 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               33                23 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                9                47 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                9                47 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               18                38 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               18                38 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                5                51 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                5                51 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
                7                49 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
                7                49 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               13                43 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               13                43 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               13                43 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               13                43 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               23                33 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               23                33 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                9                47 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                9                47 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               34                22 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               34                22 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               39                17 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               39                17 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                23                 33 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                23                 33 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                21                 35 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                21                 35 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                26                 30 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                26                 30 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                24                 32 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                24                 32 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                13                 43 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                13                 43 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                14                 42 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                14                 42 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                26                 30 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                26                 30 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                27                 29 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                27                 29 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                32                 24 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                32                 24 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                32                 24 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                32                 24 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                37                 19 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                37                 19 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                34                 22 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                34                 22 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                17                 39 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                17                 39 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                18                 38 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                18                 38 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                20                 36 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                20                 36 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                15                 41 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                15                 41 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                13                 43 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                13                 43 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 7                 49 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 7                 49 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 4                 52 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 4                 52 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                17                 39 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                17                 39 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                33                 23 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                33                 23 
[1] "XP LOSS MUTATION ANALYSIS"
[1] 3
  XP LOSS MUTATED XP LOSS WILD-TYPE 
               15                41 
  XP LOSS MUTATED XP LOSS WILD-TYPE 
               15                41 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               18                38 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               18                38 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 56 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 56 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        5     12      7
  1P GAIN WILD-TYPE     13      9     10
D1V1, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               5                13
  CLUS_2              12                 9
  CLUS_3               7                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P GAIN MUTATED        6      3      5      6      4
  1P GAIN WILD-TYPE      5      6      5      7      9
D1V2, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               6                 5
  CLUS_2               3                 6
  CLUS_3               5                 5
  CLUS_4               6                 7
  CLUS_5               4                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        5      4      7      4
  1P GAIN WILD-TYPE      4      8      8      7
D1V3, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               5                 4
  CLUS_2               4                 8
  CLUS_3               7                 8
  CLUS_4               4                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1P GAIN MUTATED        4      4      4      4      2      1      1
  1P GAIN WILD-TYPE      4      4      3      3      5      4      4
D1V4, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               4                 4
  CLUS_2               4                 4
  CLUS_3               4                 3
  CLUS_4               4                 3
  CLUS_5               2                 5
  CLUS_6               1                 4
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        7      9      5      3
  1P GAIN WILD-TYPE      7     11      7      7
D1V5, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               7                 7
  CLUS_2               9                11
  CLUS_3               5                 7
  CLUS_4               3                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1P GAIN MUTATED        5      1      5      2      3      2      6
  1P GAIN WILD-TYPE      5      3      3      4      5      4      8
D1V6, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               5                 5
  CLUS_2               1                 3
  CLUS_3               5                 3
  CLUS_4               2                 4
  CLUS_5               3                 5
  CLUS_6               2                 4
  CLUS_7               6                 8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        3     12      1      8
  1P GAIN WILD-TYPE      7     10      3     11
D1V7, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               3                 7
  CLUS_2              12                10
  CLUS_3               1                 3
  CLUS_4               8                11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        7      5      8      4
  1P GAIN WILD-TYPE     16      3     10      2
D1V8, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               7                16
  CLUS_2               5                 3
  CLUS_3               8                10
  CLUS_4               4                 2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        4     12      8
  1P GAIN WILD-TYPE      8     11     12
D1V9, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               4                 8
  CLUS_2              12                11
  CLUS_3               8                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        8      4      8      4
  1P GAIN WILD-TYPE     16      3      9      3
D1V10, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               8                16
  CLUS_2               4                 3
  CLUS_3               8                 9
  CLUS_4               4                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        9     14      8
  1Q GAIN WILD-TYPE      9      7      9
D2V1, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               9                 9
  CLUS_2              14                 7
  CLUS_3               8                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q GAIN MUTATED        6      4      6      9      6
  1Q GAIN WILD-TYPE      5      5      4      4      7
D2V2, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               6                 5
  CLUS_2               4                 5
  CLUS_3               6                 4
  CLUS_4               9                 4
  CLUS_5               6                 7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED        5      7      9      5
  1Q GAIN WILD-TYPE      4      5      6      6
D2V3, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               5                 4
  CLUS_2               7                 5
  CLUS_3               9                 6
  CLUS_4               5                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1Q GAIN MUTATED        4      5      4      5      3      1      4
  1Q GAIN WILD-TYPE      4      3      3      2      4      4      1
D2V4, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               4                 4
  CLUS_2               5                 3
  CLUS_3               4                 3
  CLUS_4               5                 2
  CLUS_5               3                 4
  CLUS_6               1                 4
  CLUS_7               4                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED        7     13      6      5
  1Q GAIN WILD-TYPE      7      7      6      5
D2V5, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               7                 7
  CLUS_2              13                 7
  CLUS_3               6                 6
  CLUS_4               5                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1Q GAIN MUTATED        5      1      5      2      5      3     10
  1Q GAIN WILD-TYPE      5      3      3      4      3      3      4
D2V6, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               5                 5
  CLUS_2               1                 3
  CLUS_3               5                 3
  CLUS_4               2                 4
  CLUS_5               5                 3
  CLUS_6               3                 3
  CLUS_7              10                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED        4     13      3     11
  1Q GAIN WILD-TYPE      6      9      1      8
D2V7, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               4                 6
  CLUS_2              13                 9
  CLUS_3               3                 1
  CLUS_4              11                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED       11      5     10      5
  1Q GAIN WILD-TYPE     12      3      8      1
D2V8, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              11                12
  CLUS_2               5                 3
  CLUS_3              10                 8
  CLUS_4               5                 1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        6     13     12
  1Q GAIN WILD-TYPE      6     10      8
D2V9, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               6                 6
  CLUS_2              13                10
  CLUS_3              12                 8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED       12      4     10      5
  1Q GAIN WILD-TYPE     12      3      7      2
D2V10, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              12                12
  CLUS_2               4                 3
  CLUS_3              10                 7
  CLUS_4               5                 2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        8      9      6
  2P GAIN WILD-TYPE     10     12     11
D3V1, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               8                10
  CLUS_2               9                12
  CLUS_3               6                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P GAIN MUTATED        7      3      3      1      9
  2P GAIN WILD-TYPE      4      6      7     12      4
D3V2, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               7                 4
  CLUS_2               3                 6
  CLUS_3               3                 7
  CLUS_4               1                12
  CLUS_5               9                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        7      3      7      4
  2P GAIN WILD-TYPE      2      9      8      7
D3V3, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               7                 2
  CLUS_2               3                 9
  CLUS_3               7                 8
  CLUS_4               4                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2P GAIN MUTATED        4      3      7      1      3      2      1
  2P GAIN WILD-TYPE      4      5      0      6      4      3      4
D3V4, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               4                 4
  CLUS_2               3                 5
  CLUS_3               7                 0
  CLUS_4               1                 6
  CLUS_5               3                 4
  CLUS_6               2                 3
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        7      5      9      2
  2P GAIN WILD-TYPE      7     15      3      8
D3V5, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               7                 7
  CLUS_2               5                15
  CLUS_3               9                 3
  CLUS_4               2                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2P GAIN MUTATED        6      1      2      4      1      5      4
  2P GAIN WILD-TYPE      4      3      6      2      7      1     10
D3V6, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               6                 4
  CLUS_2               1                 3
  CLUS_3               2                 6
  CLUS_4               4                 2
  CLUS_5               1                 7
  CLUS_6               5                 1
  CLUS_7               4                10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        3     12      1      7
  2P GAIN WILD-TYPE      7     10      3     12
D3V7, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               3                 7
  CLUS_2              12                10
  CLUS_3               1                 3
  CLUS_4               7                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        5      5     10      3
  2P GAIN WILD-TYPE     18      3      8      3
D3V8, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               5                18
  CLUS_2               5                 3
  CLUS_3              10                 8
  CLUS_4               3                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        5     13      5
  2P GAIN WILD-TYPE      7     10     15
D3V9, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               5                 7
  CLUS_2              13                10
  CLUS_3               5                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        6      4     10      3
  2P GAIN WILD-TYPE     18      3      7      4
D3V10, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               6                18
  CLUS_2               4                 3
  CLUS_3              10                 7
  CLUS_4               3                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        8      9      4
  2Q GAIN WILD-TYPE     10     12     13
D4V1, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               8                10
  CLUS_2               9                12
  CLUS_3               4                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q GAIN MUTATED        7      1      3      2      8
  2Q GAIN WILD-TYPE      4      8      7     11      5
D4V2, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               7                 4
  CLUS_2               1                 8
  CLUS_3               3                 7
  CLUS_4               2                11
  CLUS_5               8                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        6      2      7      4
  2Q GAIN WILD-TYPE      3     10      8      7
D4V3, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               6                 3
  CLUS_2               2                10
  CLUS_3               7                 8
  CLUS_4               4                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2Q GAIN MUTATED        4      3      5      1      4      1      1
  2Q GAIN WILD-TYPE      4      5      2      6      3      4      4
D4V4, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               4                 4
  CLUS_2               3                 5
  CLUS_3               5                 2
  CLUS_4               1                 6
  CLUS_5               4                 3
  CLUS_6               1                 4
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        6      4      9      2
  2Q GAIN WILD-TYPE      8     16      3      8
D4V5, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               6                 8
  CLUS_2               4                16
  CLUS_3               9                 3
  CLUS_4               2                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2Q GAIN MUTATED        5      1      3      3      1      5      3
  2Q GAIN WILD-TYPE      5      3      5      3      7      1     11
D4V6, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               5                 5
  CLUS_2               1                 3
  CLUS_3               3                 5
  CLUS_4               3                 3
  CLUS_5               1                 7
  CLUS_6               5                 1
  CLUS_7               3                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        3     11      1      6
  2Q GAIN WILD-TYPE      7     11      3     13
D4V7, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               3                 7
  CLUS_2              11                11
  CLUS_3               1                 3
  CLUS_4               6                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        4      4     10      3
  2Q GAIN WILD-TYPE     19      4      8      3
D4V8, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               4                19
  CLUS_2               4                 4
  CLUS_3              10                 8
  CLUS_4               3                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        4     12      5
  2Q GAIN WILD-TYPE      8     11     15
D4V9, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               4                 8
  CLUS_2              12                11
  CLUS_3               5                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        5      4      9      3
  2Q GAIN WILD-TYPE     19      3      8      4
D4V10, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               5                19
  CLUS_2               4                 3
  CLUS_3               9                 8
  CLUS_4               3                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        5      2      5
  3P GAIN WILD-TYPE     13     19     12
D5V1, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               5                13
  CLUS_2               2                19
  CLUS_3               5                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P GAIN MUTATED        4      0      1      3      4
  3P GAIN WILD-TYPE      7      9      9     10      9
D5V2, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               4                 7
  CLUS_2               0                 9
  CLUS_3               1                 9
  CLUS_4               3                10
  CLUS_5               4                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        2      5      3      0
  3P GAIN WILD-TYPE      7      7     12     11
D5V3, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               2                 7
  CLUS_2               5                 7
  CLUS_3               3                12
  CLUS_4               0                11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P GAIN MUTATED        4      2      1      0      1      0      2
  3P GAIN WILD-TYPE      4      6      6      7      6      5      3
D5V4, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               4                 4
  CLUS_2               2                 6
  CLUS_3               1                 6
  CLUS_4               0                 7
  CLUS_5               1                 6
  CLUS_6               0                 5
  CLUS_7               2                 3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        5      3      3      1
  3P GAIN WILD-TYPE      9     17      9      9
D5V5, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               5                 9
  CLUS_2               3                17
  CLUS_3               3                 9
  CLUS_4               1                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P GAIN MUTATED        5      0      0      1      1      2      3
  3P GAIN WILD-TYPE      5      4      8      5      7      4     11
D5V6, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               5                 5
  CLUS_2               0                 4
  CLUS_3               0                 8
  CLUS_4               1                 5
  CLUS_5               1                 7
  CLUS_6               2                 4
  CLUS_7               3                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        2      6      1      3
  3P GAIN WILD-TYPE      8     16      3     16
D5V7, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               6                16
  CLUS_3               1                 3
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        4      4      3      1
  3P GAIN WILD-TYPE     19      4     15      5
D5V8, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               4                19
  CLUS_2               4                 4
  CLUS_3               3                15
  CLUS_4               1                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        2      7      3
  3P GAIN WILD-TYPE     10     16     17
D5V9, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               2                10
  CLUS_2               7                16
  CLUS_3               3                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        4      3      4      1
  3P GAIN WILD-TYPE     20      4     13      6
D5V10, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               4                20
  CLUS_2               3                 4
  CLUS_3               4                13
  CLUS_4               1                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       11      6      6
  3Q GAIN WILD-TYPE      7     15     11
D6V1, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              11                 7
  CLUS_2               6                15
  CLUS_3               6                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q GAIN MUTATED        7      1      2      8      5
  3Q GAIN WILD-TYPE      4      8      8      5      8
D6V2, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               7                 4
  CLUS_2               1                 8
  CLUS_3               2                 8
  CLUS_4               8                 5
  CLUS_5               5                 8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        4      8      5      4
  3Q GAIN WILD-TYPE      5      4     10      7
D6V3, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               4                 5
  CLUS_2               8                 4
  CLUS_3               5                10
  CLUS_4               4                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q GAIN MUTATED        5      3      2      2      3      2      4
  3Q GAIN WILD-TYPE      3      5      5      5      4      3      1
D6V4, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               5                 3
  CLUS_2               3                 5
  CLUS_3               2                 5
  CLUS_4               2                 5
  CLUS_5               3                 4
  CLUS_6               2                 3
  CLUS_7               4                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        9      8      3      3
  3Q GAIN WILD-TYPE      5     12      9      7
D6V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               9                 5
  CLUS_2               8                12
  CLUS_3               3                 9
  CLUS_4               3                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q GAIN MUTATED        7      2      1      1      2      2      8
  3Q GAIN WILD-TYPE      3      2      7      5      6      4      6
D6V6, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               7                 3
  CLUS_2               2                 2
  CLUS_3               1                 7
  CLUS_4               1                 5
  CLUS_5               2                 6
  CLUS_6               2                 4
  CLUS_7               8                 6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        3     12      1      7
  3Q GAIN WILD-TYPE      7     10      3     12
D6V7, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               3                 7
  CLUS_2              12                10
  CLUS_3               1                 3
  CLUS_4               7                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        7      6      7      3
  3Q GAIN WILD-TYPE     16      2     11      3
D6V8, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               7                16
  CLUS_2               6                 2
  CLUS_3               7                11
  CLUS_4               3                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        2     13      8
  3Q GAIN WILD-TYPE     10     10     12
D6V9, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               2                10
  CLUS_2              13                10
  CLUS_3               8                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        7      5      8      3
  3Q GAIN WILD-TYPE     17      2      9      4
D6V10, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               7                17
  CLUS_2               5                 2
  CLUS_3               8                 9
  CLUS_4               3                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        4      3      2
  4P GAIN WILD-TYPE     14     18     15
D7V1, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               4                14
  CLUS_2               3                18
  CLUS_3               2                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P GAIN MUTATED        1      1      1      4      2
  4P GAIN WILD-TYPE     10      8      9      9     11
D7V2, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                10
  CLUS_2               1                 8
  CLUS_3               1                 9
  CLUS_4               4                 9
  CLUS_5               2                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        0      5      1      1
  4P GAIN WILD-TYPE      9      7     14     10
D7V3, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               0                 9
  CLUS_2               5                 7
  CLUS_3               1                14
  CLUS_4               1                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4P GAIN MUTATED        1      0      0      2      0      1      3
  4P GAIN WILD-TYPE      7      8      7      5      7      4      2
D7V4, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               0                 8
  CLUS_3               0                 7
  CLUS_4               2                 5
  CLUS_5               0                 7
  CLUS_6               1                 4
  CLUS_7               3                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        3      3      1      2
  4P GAIN WILD-TYPE     11     17     11      8
D7V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               3                11
  CLUS_2               3                17
  CLUS_3               1                11
  CLUS_4               2                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4P GAIN MUTATED        2      0      1      1      1      0      4
  4P GAIN WILD-TYPE      8      4      7      5      7      6     10
D7V6, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               0                 4
  CLUS_3               1                 7
  CLUS_4               1                 5
  CLUS_5               1                 7
  CLUS_6               0                 6
  CLUS_7               4                10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        1      5      0      3
  4P GAIN WILD-TYPE      9     17      4     16
D7V7, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               5                17
  CLUS_3               0                 4
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        2      2      3      2
  4P GAIN WILD-TYPE     21      6     15      4
D7V8, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                21
  CLUS_2               2                 6
  CLUS_3               3                15
  CLUS_4               2                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        0      5      4
  4P GAIN WILD-TYPE     12     18     16
D7V9, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               0                12
  CLUS_2               5                18
  CLUS_3               4                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        2      1      4      2
  4P GAIN WILD-TYPE     22      6     13      5
D7V10, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                22
  CLUS_2               1                 6
  CLUS_3               4                13
  CLUS_4               2                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        1      1      1
  4Q GAIN WILD-TYPE     17     20     16
D8V1, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                17
  CLUS_2               1                20
  CLUS_3               1                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q GAIN MUTATED        0      1      0      2      0
  4Q GAIN WILD-TYPE     11      8     10     11     13
D8V2, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                11
  CLUS_2               1                 8
  CLUS_3               0                10
  CLUS_4               2                11
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        0      1      1      0
  4Q GAIN WILD-TYPE      9     11     14     11
D8V3, multiclass
[1] "Remove cluster labels:" "4Q GAIN MUTATED"       
clus
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                2                45 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RJ        TCGA-N5-A4RM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS        TCGA-N5-A4RT 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N5-A59E        TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N6-A4VD        TCGA-N6-A4VE        TCGA-N7-A4Y0        TCGA-N7-A4Y5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI        TCGA-N8-A4PL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4Q1        TCGA-N9-A4Q3 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q4        TCGA-N9-A4Q7        TCGA-NA-A4QV        TCGA-NA-A4QW 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NA-A4QX        TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NF-A4X2        TCGA-NF-A5CP        TCGA-NG-A4VU        TCGA-NG-A4VW 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QN-A5NN 
"4Q GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4Q GAIN MUTATED        0      0      0      1      0      0      1
  4Q GAIN WILD-TYPE      8      8      7      6      7      5      4
D8V4, multiclass
[1] "Remove cluster labels:" "4Q GAIN MUTATED"       
clus
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                2                45 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RJ        TCGA-N5-A4RM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS        TCGA-N5-A4RT 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N5-A59E        TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N6-A4VD        TCGA-N6-A4VE        TCGA-N7-A4Y0        TCGA-N7-A4Y5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI        TCGA-N8-A4PL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO        TCGA-N8-A4PP 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4Q1        TCGA-N9-A4Q3 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q4        TCGA-N9-A4Q7        TCGA-NA-A4QV        TCGA-NA-A4QW 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NA-A4QX        TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NF-A4X2        TCGA-NF-A5CP        TCGA-NG-A4VU        TCGA-NG-A4VW 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-QN-A5NN 
"4Q GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        0      2      0      1
  4Q GAIN WILD-TYPE     14     18     12      9
D8V5, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                14
  CLUS_2               2                18
  CLUS_3               0                12
  CLUS_4               1                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4Q GAIN MUTATED        0      0      0      0      1      0      2
  4Q GAIN WILD-TYPE     10      4      8      6      7      6     12
D8V6, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                10
  CLUS_2               0                 4
  CLUS_3               0                 8
  CLUS_4               0                 6
  CLUS_5               1                 7
  CLUS_6               0                 6
  CLUS_7               2                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        0      1      0      2
  4Q GAIN WILD-TYPE     10     21      4     17
D8V7, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                10
  CLUS_2               1                21
  CLUS_3               0                 4
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        1      0      1      1
  4Q GAIN WILD-TYPE     22      8     17      5
D8V8, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                22
  CLUS_2               0                 8
  CLUS_3               1                17
  CLUS_4               1                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        0      1      2
  4Q GAIN WILD-TYPE     12     22     18
D8V9, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                12
  CLUS_2               1                22
  CLUS_3               2                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        1      0      1      1
  4Q GAIN WILD-TYPE     23      7     16      6
D8V10, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                23
  CLUS_2               0                 7
  CLUS_3               1                16
  CLUS_4               1                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        7      5     11
  5P GAIN WILD-TYPE     11     16      6
D9V1, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               7                11
  CLUS_2               5                16
  CLUS_3              11                 6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P GAIN MUTATED        6      3      6      5      3
  5P GAIN WILD-TYPE      5      6      4      8     10
D9V2, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               6                 5
  CLUS_2               3                 6
  CLUS_3               6                 4
  CLUS_4               5                 8
  CLUS_5               3                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED        5      9      2      3
  5P GAIN WILD-TYPE      4      3     13      8
D9V3, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               5                 4
  CLUS_2               9                 3
  CLUS_3               2                13
  CLUS_4               3                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P GAIN MUTATED        5      3      3      1      1      2      4
  5P GAIN WILD-TYPE      3      5      4      6      6      3      1
D9V4, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               5                 3
  CLUS_2               3                 5
  CLUS_3               3                 4
  CLUS_4               1                 6
  CLUS_5               1                 6
  CLUS_6               2                 3
  CLUS_7               4                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED        8      8      3      4
  5P GAIN WILD-TYPE      6     12      9      6
D9V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               8                 6
  CLUS_2               8                12
  CLUS_3               3                 9
  CLUS_4               4                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P GAIN MUTATED        7      0      3      2      3      1      7
  5P GAIN WILD-TYPE      3      4      5      4      5      5      7
D9V6, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               7                 3
  CLUS_2               0                 4
  CLUS_3               3                 5
  CLUS_4               2                 4
  CLUS_5               3                 5
  CLUS_6               1                 5
  CLUS_7               7                 7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED        3      8      2      9
  5P GAIN WILD-TYPE      7     14      2     10
D9V7, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               8                14
  CLUS_3               2                 2
  CLUS_4               9                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED       11      6      3      2
  5P GAIN WILD-TYPE     12      2     15      4
D9V8, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              11                12
  CLUS_2               6                 2
  CLUS_3               3                15
  CLUS_4               2                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        4      8     10
  5P GAIN WILD-TYPE      8     15     10
D9V9, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               4                 8
  CLUS_2               8                15
  CLUS_3              10                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED       11      5      4      2
  5P GAIN WILD-TYPE     13      2     13      5
D9V10, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              11                13
  CLUS_2               5                 2
  CLUS_3               4                13
  CLUS_4               2                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        2      2      4
  5Q GAIN WILD-TYPE     16     19     13
D10V1, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               2                16
  CLUS_2               2                19
  CLUS_3               4                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q GAIN MUTATED        0      1      2      3      2
  5Q GAIN WILD-TYPE     11      8      8     10     11
D10V2, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               0                11
  CLUS_2               1                 8
  CLUS_3               2                 8
  CLUS_4               3                10
  CLUS_5               2                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        0      4      0      1
  5Q GAIN WILD-TYPE      9      8     15     10
D10V3, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               0                 9
  CLUS_2               4                 8
  CLUS_3               0                15
  CLUS_4               1                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q GAIN MUTATED        0      1      1      0      0      1      2
  5Q GAIN WILD-TYPE      8      7      6      7      7      4      3
D10V4, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               1                 7
  CLUS_3               1                 6
  CLUS_4               0                 7
  CLUS_5               0                 7
  CLUS_6               1                 4
  CLUS_7               2                 3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        0      4      2      2
  5Q GAIN WILD-TYPE     14     16     10      8
D10V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               0                14
  CLUS_2               4                16
  CLUS_3               2                10
  CLUS_4               2                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q GAIN MUTATED        0      0      0      2      1      1      4
  5Q GAIN WILD-TYPE     10      4      8      4      7      5     10
D10V6, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               0                10
  CLUS_2               0                 4
  CLUS_3               0                 8
  CLUS_4               2                 4
  CLUS_5               1                 7
  CLUS_6               1                 5
  CLUS_7               4                10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        0      1      1      5
  5Q GAIN WILD-TYPE     10     21      3     14
D10V7, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               0                10
  CLUS_2               1                21
  CLUS_3               1                 3
  CLUS_4               5                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        6      0      1      0
  5Q GAIN WILD-TYPE     17      8     17      6
D10V8, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               6                17
  CLUS_2               0                 8
  CLUS_3               1                17
  CLUS_4               0                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        1      1      5
  5Q GAIN WILD-TYPE     11     22     15
D10V9, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1                11
  CLUS_2               1                22
  CLUS_3               5                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        6      0      1      0
  5Q GAIN WILD-TYPE     18      7     16      7
D10V10, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               6                18
  CLUS_2               0                 7
  CLUS_3               1                16
  CLUS_4               0                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       12      8     10
  6P GAIN WILD-TYPE      6     13      7
D11V1, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              12                 6
  CLUS_2               8                13
  CLUS_3              10                 7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P GAIN MUTATED        7      6      4      8      5
  6P GAIN WILD-TYPE      4      3      6      5      8
D11V2, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               7                 4
  CLUS_2               6                 3
  CLUS_3               4                 6
  CLUS_4               8                 5
  CLUS_5               5                 8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        6      6      9      4
  6P GAIN WILD-TYPE      3      6      6      7
D11V3, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               6                 3
  CLUS_2               6                 6
  CLUS_3               9                 6
  CLUS_4               4                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6P GAIN MUTATED        5      3      5      5      4      1      2
  6P GAIN WILD-TYPE      3      5      2      2      3      4      3
D11V4, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               5                 3
  CLUS_2               3                 5
  CLUS_3               5                 2
  CLUS_4               5                 2
  CLUS_5               4                 3
  CLUS_6               1                 4
  CLUS_7               2                 3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        7     11      5      7
  6P GAIN WILD-TYPE      7      9      7      3
D11V5, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               7                 7
  CLUS_2              11                 9
  CLUS_3               5                 7
  CLUS_4               7                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6P GAIN MUTATED        6      1      3      3      7      3      7
  6P GAIN WILD-TYPE      4      3      5      3      1      3      7
D11V6, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               6                 4
  CLUS_2               1                 3
  CLUS_3               3                 5
  CLUS_4               3                 3
  CLUS_5               7                 1
  CLUS_6               3                 3
  CLUS_7               7                 7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        5     12      2     10
  6P GAIN WILD-TYPE      5     10      2      9
D11V7, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               5                 5
  CLUS_2              12                10
  CLUS_3               2                 2
  CLUS_4              10                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED       11      6      8      4
  6P GAIN WILD-TYPE     12      2     10      2
D11V8, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              11                12
  CLUS_2               6                 2
  CLUS_3               8                10
  CLUS_4               4                 2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        7     13      9
  6P GAIN WILD-TYPE      5     10     11
D11V9, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               7                 5
  CLUS_2              13                10
  CLUS_3               9                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED       11      6      8      4
  6P GAIN WILD-TYPE     13      1      9      3
D11V10, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              11                13
  CLUS_2               6                 1
  CLUS_3               8                 9
  CLUS_4               4                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       11      7      9
  6Q GAIN WILD-TYPE      7     14      8
D12V1, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              11                 7
  CLUS_2               7                14
  CLUS_3               9                 8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q GAIN MUTATED        7      6      4      7      3
  6Q GAIN WILD-TYPE      4      3      6      6     10
D12V2, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               7                 4
  CLUS_2               6                 3
  CLUS_3               4                 6
  CLUS_4               7                 6
  CLUS_5               3                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        6      5      7      4
  6Q GAIN WILD-TYPE      3      7      8      7
D12V3, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               6                 3
  CLUS_2               5                 7
  CLUS_3               7                 8
  CLUS_4               4                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6Q GAIN MUTATED        5      2      4      4      4      1      2
  6Q GAIN WILD-TYPE      3      6      3      3      3      4      3
D12V4, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               5                 3
  CLUS_2               2                 6
  CLUS_3               4                 3
  CLUS_4               4                 3
  CLUS_5               4                 3
  CLUS_6               1                 4
  CLUS_7               2                 3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        7     10      3      7
  6Q GAIN WILD-TYPE      7     10      9      3
D12V5, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               7                 7
  CLUS_2              10                10
  CLUS_3               3                 9
  CLUS_4               7                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6Q GAIN MUTATED        6      1      3      3      7      1      6
  6Q GAIN WILD-TYPE      4      3      5      3      1      5      8
D12V6, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               6                 4
  CLUS_2               1                 3
  CLUS_3               3                 5
  CLUS_4               3                 3
  CLUS_5               7                 1
  CLUS_6               1                 5
  CLUS_7               6                 8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        5     10      2      9
  6Q GAIN WILD-TYPE      5     12      2     10
D12V7, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               5                 5
  CLUS_2              10                12
  CLUS_3               2                 2
  CLUS_4               9                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED       10      6      6      4
  6Q GAIN WILD-TYPE     13      2     12      2
D12V8, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              10                13
  CLUS_2               6                 2
  CLUS_3               6                12
  CLUS_4               4                 2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        7     11      8
  6Q GAIN WILD-TYPE      5     12     12
D12V9, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               7                 5
  CLUS_2              11                12
  CLUS_3               8                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED       10      6      6      4
  6Q GAIN WILD-TYPE     14      1     11      3
D12V10, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              10                14
  CLUS_2               6                 1
  CLUS_3               6                11
  CLUS_4               4                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        7      5      9
  7P GAIN WILD-TYPE     11     16      8
D13V1, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               7                11
  CLUS_2               5                16
  CLUS_3               9                 8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P GAIN MUTATED        6      4      2      5      4
  7P GAIN WILD-TYPE      5      5      8      8      9
D13V2, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               6                 5
  CLUS_2               4                 5
  CLUS_3               2                 8
  CLUS_4               5                 8
  CLUS_5               4                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED        3      5      6      3
  7P GAIN WILD-TYPE      6      7      9      8
D13V3, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               3                 6
  CLUS_2               5                 7
  CLUS_3               6                 9
  CLUS_4               3                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7P GAIN MUTATED        5      4      1      2      1      1      3
  7P GAIN WILD-TYPE      3      4      6      5      6      4      2
D13V4, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               5                 3
  CLUS_2               4                 4
  CLUS_3               1                 6
  CLUS_4               2                 5
  CLUS_5               1                 6
  CLUS_6               1                 4
  CLUS_7               3                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED        9      6      3      3
  7P GAIN WILD-TYPE      5     14      9      7
D13V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               9                 5
  CLUS_2               6                14
  CLUS_3               3                 9
  CLUS_4               3                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7P GAIN MUTATED        6      3      1      2      3      1      5
  7P GAIN WILD-TYPE      4      1      7      4      5      5      9
D13V6, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               6                 4
  CLUS_2               3                 1
  CLUS_3               1                 7
  CLUS_4               2                 4
  CLUS_5               3                 5
  CLUS_6               1                 5
  CLUS_7               5                 9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED        5      9      2      5
  7P GAIN WILD-TYPE      5     13      2     14
D13V7, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               5                 5
  CLUS_2               9                13
  CLUS_3               2                 2
  CLUS_4               5                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED        9      5      7      0
  7P GAIN WILD-TYPE     14      3     11      6
D13V8, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               9                14
  CLUS_2               5                 3
  CLUS_3               7                11
  CLUS_4               0                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        6     10      5
  7P GAIN WILD-TYPE      6     13     15
D13V9, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               6                 6
  CLUS_2              10                13
  CLUS_3               5                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED       10      4      7      0
  7P GAIN WILD-TYPE     14      3     10      7
D13V10, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              10                14
  CLUS_2               4                 3
  CLUS_3               7                10
  CLUS_4               0                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        7      5      5
  7Q GAIN WILD-TYPE     11     16     12
D14V1, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               7                11
  CLUS_2               5                16
  CLUS_3               5                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q GAIN MUTATED        4      3      2      5      3
  7Q GAIN WILD-TYPE      7      6      8      8     10
D14V2, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               4                 7
  CLUS_2               3                 6
  CLUS_3               2                 8
  CLUS_4               5                 8
  CLUS_5               3                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED        2      3      6      2
  7Q GAIN WILD-TYPE      7      9      9      9
D14V3, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               2                 7
  CLUS_2               3                 9
  CLUS_3               6                 9
  CLUS_4               2                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7Q GAIN MUTATED        4      2      1      2      2      1      1
  7Q GAIN WILD-TYPE      4      6      6      5      5      4      4
D14V4, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               4                 4
  CLUS_2               2                 6
  CLUS_3               1                 6
  CLUS_4               2                 5
  CLUS_5               2                 5
  CLUS_6               1                 4
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED        6      7      3      1
  7Q GAIN WILD-TYPE      8     13      9      9
D14V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               6                 8
  CLUS_2               7                13
  CLUS_3               3                 9
  CLUS_4               1                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7Q GAIN MUTATED        4      2      1      1      2      2      5
  7Q GAIN WILD-TYPE      6      2      7      5      6      4      9
D14V6, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               4                 6
  CLUS_2               2                 2
  CLUS_3               1                 7
  CLUS_4               1                 5
  CLUS_5               2                 6
  CLUS_6               2                 4
  CLUS_7               5                 9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED        4      6      2      5
  7Q GAIN WILD-TYPE      6     16      2     14
D14V7, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               4                 6
  CLUS_2               6                16
  CLUS_3               2                 2
  CLUS_4               5                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED       10      3      4      0
  7Q GAIN WILD-TYPE     13      5     14      6
D14V8, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              10                13
  CLUS_2               3                 5
  CLUS_3               4                14
  CLUS_4               0                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        4      7      6
  7Q GAIN WILD-TYPE      8     16     14
D14V9, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               4                 8
  CLUS_2               7                16
  CLUS_3               6                14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED       10      3      4      0
  7Q GAIN WILD-TYPE     14      4     13      7
D14V10, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              10                14
  CLUS_2               3                 4
  CLUS_3               4                13
  CLUS_4               0                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        3      9      7
  8P GAIN WILD-TYPE     15     12     10
D15V1, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               3                15
  CLUS_2               9                12
  CLUS_3               7                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P GAIN MUTATED        3      2      5      5      4
  8P GAIN WILD-TYPE      8      7      5      8      9
D15V2, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               3                 8
  CLUS_2               2                 7
  CLUS_3               5                 5
  CLUS_4               5                 8
  CLUS_5               4                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        1      5      5      4
  8P GAIN WILD-TYPE      8      7     10      7
D15V3, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               1                 8
  CLUS_2               5                 7
  CLUS_3               5                10
  CLUS_4               4                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P GAIN MUTATED        2      3      0      2      2      3      3
  8P GAIN WILD-TYPE      6      5      7      5      5      2      2
D15V4, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               2                 6
  CLUS_2               3                 5
  CLUS_3               0                 7
  CLUS_4               2                 5
  CLUS_5               2                 5
  CLUS_6               3                 2
  CLUS_7               3                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        5      9      2      3
  8P GAIN WILD-TYPE      9     11     10      7
D15V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               5                 9
  CLUS_2               9                11
  CLUS_3               2                10
  CLUS_4               3                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P GAIN MUTATED        3      2      3      1      3      1      6
  8P GAIN WILD-TYPE      7      2      5      5      5      5      8
D15V6, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               2                 2
  CLUS_3               3                 5
  CLUS_4               1                 5
  CLUS_5               3                 5
  CLUS_6               1                 5
  CLUS_7               6                 8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        3      7      1      7
  8P GAIN WILD-TYPE      7     15      3     12
D15V7, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               7                15
  CLUS_3               1                 3
  CLUS_4               7                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED       10      2      5      1
  8P GAIN WILD-TYPE     13      6     13      5
D15V8, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              10                13
  CLUS_2               2                 6
  CLUS_3               5                13
  CLUS_4               1                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        4      6      8
  8P GAIN WILD-TYPE      8     17     12
D15V9, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               4                 8
  CLUS_2               6                17
  CLUS_3               8                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED       10      1      5      2
  8P GAIN WILD-TYPE     14      6     12      5
D15V10, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              10                14
  CLUS_2               1                 6
  CLUS_3               5                12
  CLUS_4               2                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        5     12     13
  8Q GAIN WILD-TYPE     13      9      4
D16V1, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               5                13
  CLUS_2              12                 9
  CLUS_3              13                 4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q GAIN MUTATED        5      2      7      9      7
  8Q GAIN WILD-TYPE      6      7      3      4      6
D16V2, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               5                 6
  CLUS_2               2                 7
  CLUS_3               7                 3
  CLUS_4               9                 4
  CLUS_5               7                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED        3      7      7      7
  8Q GAIN WILD-TYPE      6      5      8      4
D16V3, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               3                 6
  CLUS_2               7                 5
  CLUS_3               7                 8
  CLUS_4               7                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q GAIN MUTATED        4      5      1      4      4      3      3
  8Q GAIN WILD-TYPE      4      3      6      3      3      2      2
D16V4, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               4                 4
  CLUS_2               5                 3
  CLUS_3               1                 6
  CLUS_4               4                 3
  CLUS_5               4                 3
  CLUS_6               3                 2
  CLUS_7               3                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED        8     15      4      3
  8Q GAIN WILD-TYPE      6      5      8      7
D16V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               8                 6
  CLUS_2              15                 5
  CLUS_3               4                 8
  CLUS_4               3                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q GAIN MUTATED        5      2      5      3      4      1     10
  8Q GAIN WILD-TYPE      5      2      3      3      4      5      4
D16V6, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               5                 5
  CLUS_2               2                 2
  CLUS_3               5                 3
  CLUS_4               3                 3
  CLUS_5               4                 4
  CLUS_6               1                 5
  CLUS_7              10                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED        6      9      1     13
  8Q GAIN WILD-TYPE      4     13      3      6
D16V7, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               6                 4
  CLUS_2               9                13
  CLUS_3               1                 3
  CLUS_4              13                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED       13      3      8      5
  8Q GAIN WILD-TYPE     10      5     10      1
D16V8, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              13                10
  CLUS_2               3                 5
  CLUS_3               8                10
  CLUS_4               5                 1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        7      8     14
  8Q GAIN WILD-TYPE      5     15      6
D16V9, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               7                 5
  CLUS_2               8                15
  CLUS_3              14                 6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED       14      2      7      6
  8Q GAIN WILD-TYPE     10      5     10      1
D16V10, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              14                10
  CLUS_2               2                 5
  CLUS_3               7                10
  CLUS_4               6                 1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        1      4      1
  9P GAIN WILD-TYPE     17     17     16
D17V1, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               1                17
  CLUS_2               4                17
  CLUS_3               1                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P GAIN MUTATED        0      1      2      2      1
  9P GAIN WILD-TYPE     11      8      8     11     12
D17V2, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               0                11
  CLUS_2               1                 8
  CLUS_3               2                 8
  CLUS_4               2                11
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        0      2      1      1
  9P GAIN WILD-TYPE      9     10     14     10
D17V3, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               0                 9
  CLUS_2               2                10
  CLUS_3               1                14
  CLUS_4               1                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P GAIN MUTATED        0      0      0      2      0      1      1
  9P GAIN WILD-TYPE      8      8      7      5      7      4      4
D17V4, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               0                 8
  CLUS_3               0                 7
  CLUS_4               2                 5
  CLUS_5               0                 7
  CLUS_6               1                 4
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        1      3      1      1
  9P GAIN WILD-TYPE     13     17     11      9
D17V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               1                13
  CLUS_2               3                17
  CLUS_3               1                11
  CLUS_4               1                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P GAIN MUTATED        0      0      2      0      1      1      2
  9P GAIN WILD-TYPE     10      4      6      6      7      5     12
D17V6, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               0                10
  CLUS_2               0                 4
  CLUS_3               2                 6
  CLUS_4               0                 6
  CLUS_5               1                 7
  CLUS_6               1                 5
  CLUS_7               2                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        2      2      0      2
  9P GAIN WILD-TYPE      8     20      4     17
D17V7, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               2                20
  CLUS_3               0                 4
  CLUS_4               2                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        3      0      2      1
  9P GAIN WILD-TYPE     20      8     16      5
D17V8, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               3                20
  CLUS_2               0                 8
  CLUS_3               2                16
  CLUS_4               1                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        1      2      3
  9P GAIN WILD-TYPE     11     21     17
D17V9, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               1                11
  CLUS_2               2                21
  CLUS_3               3                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        3      0      2      1
  9P GAIN WILD-TYPE     21      7     15      6
D17V10, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               3                21
  CLUS_2               0                 7
  CLUS_3               2                15
  CLUS_4               1                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = 10P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        6      6      9
  10P GAIN WILD-TYPE     12     15      8
D18V1, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                6                 12
  CLUS_2                6                 15
  CLUS_3                9                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P GAIN MUTATED        7      0      5      3      6
  10P GAIN WILD-TYPE      4      9      5     10      7
D18V2, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                7                  4
  CLUS_2                0                  9
  CLUS_3                5                  5
  CLUS_4                3                 10
  CLUS_5                6                  7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        5      7      5      2
  10P GAIN WILD-TYPE      4      5     10      9
D18V3, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                5                  4
  CLUS_2                7                  5
  CLUS_3                5                 10
  CLUS_4                2                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P GAIN MUTATED        6      3      2      2      1      2      3
  10P GAIN WILD-TYPE      2      5      5      5      6      3      2
D18V4, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                6                  2
  CLUS_2                3                  5
  CLUS_3                2                  5
  CLUS_4                2                  5
  CLUS_5                1                  6
  CLUS_6                2                  3
  CLUS_7                3                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        8      4      7      2
  10P GAIN WILD-TYPE      6     16      5      8
D18V5, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                8                  6
  CLUS_2                4                 16
  CLUS_3                7                  5
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P GAIN MUTATED        7      0      2      2      2      4      4
  10P GAIN WILD-TYPE      3      4      6      4      6      2     10
D18V6, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                7                  3
  CLUS_2                0                  4
  CLUS_3                2                  6
  CLUS_4                2                  4
  CLUS_5                2                  6
  CLUS_6                4                  2
  CLUS_7                4                 10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        5      9      2      4
  10P GAIN WILD-TYPE      5     13      2     15
D18V7, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                5                  5
  CLUS_2                9                 13
  CLUS_3                2                  2
  CLUS_4                4                 15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        8      6      5      1
  10P GAIN WILD-TYPE     15      2     13      5
D18V8, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                8                 15
  CLUS_2                6                  2
  CLUS_3                5                 13
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        4     10      6
  10P GAIN WILD-TYPE      8     13     14
D18V9, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                4                  8
  CLUS_2               10                 13
  CLUS_3                6                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        8      5      6      1
  10P GAIN WILD-TYPE     16      2     11      6
D18V10, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                8                 16
  CLUS_2                5                  2
  CLUS_3                6                 11
  CLUS_4                1                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = 10Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        5      6      6
  10Q GAIN WILD-TYPE     13     15     11
D19V1, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                5                 13
  CLUS_2                6                 15
  CLUS_3                6                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q GAIN MUTATED        6      1      3      4      3
  10Q GAIN WILD-TYPE      5      8      7      9     10
D19V2, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                6                  5
  CLUS_2                1                  8
  CLUS_3                3                  7
  CLUS_4                4                  9
  CLUS_5                3                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        4      5      6      1
  10Q GAIN WILD-TYPE      5      7      9     10
D19V3, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                4                  5
  CLUS_2                5                  7
  CLUS_3                6                  9
  CLUS_4                1                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10Q GAIN MUTATED        5      3      1      3      1      1      2
  10Q GAIN WILD-TYPE      3      5      6      4      6      4      3
D19V4, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                5                  3
  CLUS_2                3                  5
  CLUS_3                1                  6
  CLUS_4                3                  4
  CLUS_5                1                  6
  CLUS_6                1                  4
  CLUS_7                2                  3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        6      4      4      3
  10Q GAIN WILD-TYPE      8     16      8      7
D19V5, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                6                  8
  CLUS_2                4                 16
  CLUS_3                4                  8
  CLUS_4                3                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10Q GAIN MUTATED        6      0      1      0      4      3      3
  10Q GAIN WILD-TYPE      4      4      7      6      4      3     11
D19V6, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                6                  4
  CLUS_2                0                  4
  CLUS_3                1                  7
  CLUS_4                0                  6
  CLUS_5                4                  4
  CLUS_6                3                  3
  CLUS_7                3                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        2      9      2      3
  10Q GAIN WILD-TYPE      8     13      2     16
D19V7, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                9                 13
  CLUS_3                2                  2
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        5      5      5      1
  10Q GAIN WILD-TYPE     18      3     13      5
D19V8, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                5                 18
  CLUS_2                5                  3
  CLUS_3                5                 13
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        3      9      4
  10Q GAIN WILD-TYPE      9     14     16
D19V9, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                3                  9
  CLUS_2                9                 14
  CLUS_3                4                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        5      5      5      1
  10Q GAIN WILD-TYPE     19      2     12      6
D19V10, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                5                  2
  CLUS_3                5                 12
  CLUS_4                1                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = 11P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        2      1      2
  11P GAIN WILD-TYPE     16     20     15
D20V1, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                 16
  CLUS_2                1                 20
  CLUS_3                2                 15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P GAIN MUTATED        2      0      1      2      0
  11P GAIN WILD-TYPE      9      9      9     11     13
D20V2, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                  9
  CLUS_2                0                  9
  CLUS_3                1                  9
  CLUS_4                2                 11
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        2      1      0      2
  11P GAIN WILD-TYPE      7     11     15      9
D20V3, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                  7
  CLUS_2                1                 11
  CLUS_3                0                 15
  CLUS_4                2                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P GAIN MUTATED        1      0      1      1      1      1      0
  11P GAIN WILD-TYPE      7      8      6      6      6      4      5
D20V4, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                0                  8
  CLUS_3                1                  6
  CLUS_4                1                  6
  CLUS_5                1                  6
  CLUS_6                1                  4
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        3      2      0      0
  11P GAIN WILD-TYPE     11     18     12     10
D20V5, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                2                 18
  CLUS_3                0                 12
  CLUS_4                0                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P GAIN MUTATED        2      0      1      0      0      0      2
  11P GAIN WILD-TYPE      8      4      7      6      8      6     12
D20V6, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                0                  4
  CLUS_3                1                  7
  CLUS_4                0                  6
  CLUS_5                0                  8
  CLUS_6                0                  6
  CLUS_7                2                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        2      1      0      2
  11P GAIN WILD-TYPE      8     21      4     17
D20V7, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                1                 21
  CLUS_3                0                  4
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        2      2      0      1
  11P GAIN WILD-TYPE     21      6     18      5
D20V8, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                2                  6
  CLUS_3                0                 18
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        1      1      3
  11P GAIN WILD-TYPE     11     22     17
D20V9, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                1                 22
  CLUS_3                3                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        2      2      0      1
  11P GAIN WILD-TYPE     22      5     17      6
D20V10, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                2                  5
  CLUS_3                0                 17
  CLUS_4                1                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = 11Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        3      3      1
  11Q GAIN WILD-TYPE     15     18     16
D21V1, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                3                 18
  CLUS_3                1                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q GAIN MUTATED        3      0      2      1      1
  11Q GAIN WILD-TYPE      8      9      8     12     12
D21V2, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                  8
  CLUS_2                0                  9
  CLUS_3                2                  8
  CLUS_4                1                 12
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        4      1      0      2
  11Q GAIN WILD-TYPE      5     11     15      9
D21V3, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                4                  5
  CLUS_2                1                 11
  CLUS_3                0                 15
  CLUS_4                2                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q GAIN MUTATED        2      0      2      1      1      1      0
  11Q GAIN WILD-TYPE      6      8      5      6      6      4      5
D21V4, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                0                  8
  CLUS_3                2                  5
  CLUS_4                1                  6
  CLUS_5                1                  6
  CLUS_6                1                  4
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        4      2      1      0
  11Q GAIN WILD-TYPE     10     18     11     10
D21V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                4                 10
  CLUS_2                2                 18
  CLUS_3                1                 11
  CLUS_4                0                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q GAIN MUTATED        3      0      2      1      0      0      1
  11Q GAIN WILD-TYPE      7      4      6      5      8      6     13
D21V6, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                0                  4
  CLUS_3                2                  6
  CLUS_4                1                  5
  CLUS_5                0                  8
  CLUS_6                0                  6
  CLUS_7                1                 13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        2      2      0      3
  11Q GAIN WILD-TYPE      8     20      4     16
D21V7, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                2                 20
  CLUS_3                0                  4
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        4      3      0      0
  11Q GAIN WILD-TYPE     19      5     18      6
D21V8, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                4                 19
  CLUS_2                3                  5
  CLUS_3                0                 18
  CLUS_4                0                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        1      2      4
  11Q GAIN WILD-TYPE     11     21     16
D21V9, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                2                 21
  CLUS_3                4                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        4      3      0      0
  11Q GAIN WILD-TYPE     20      4     17      7
D21V10, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                3                  4
  CLUS_3                0                 17
  CLUS_4                0                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = 12P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        9      9      4
  12P GAIN WILD-TYPE      9     12     13
D22V1, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                9                  9
  CLUS_2                9                 12
  CLUS_3                4                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P GAIN MUTATED        4      6      2      1      9
  12P GAIN WILD-TYPE      7      3      8     12      4
D22V2, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                4                  7
  CLUS_2                6                  3
  CLUS_3                2                  8
  CLUS_4                1                 12
  CLUS_5                9                  4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED        3      3      9      5
  12P GAIN WILD-TYPE      6      9      6      6
D22V3, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                3                  6
  CLUS_2                3                  9
  CLUS_3                9                  6
  CLUS_4                5                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12P GAIN MUTATED        3      3      4      3      5      1      1
  12P GAIN WILD-TYPE      5      5      3      4      2      4      4
D22V4, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                3                  5
  CLUS_2                3                  5
  CLUS_3                4                  3
  CLUS_4                3                  4
  CLUS_5                5                  2
  CLUS_6                1                  4
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED        7      5      6      4
  12P GAIN WILD-TYPE      7     15      6      6
D22V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                7                  7
  CLUS_2                5                 15
  CLUS_3                6                  6
  CLUS_4                4                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12P GAIN MUTATED        4      4      3      3      2      4      2
  12P GAIN WILD-TYPE      6      0      5      3      6      2     12
D22V6, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                4                  6
  CLUS_2                4                  0
  CLUS_3                3                  5
  CLUS_4                3                  3
  CLUS_5                2                  6
  CLUS_6                4                  2
  CLUS_7                2                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED        3     10      2      7
  12P GAIN WILD-TYPE      7     12      2     12
D22V7, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                3                  7
  CLUS_2               10                 12
  CLUS_3                2                  2
  CLUS_4                7                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED        9      3      8      2
  12P GAIN WILD-TYPE     14      5     10      4
D22V8, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                9                 14
  CLUS_2                3                  5
  CLUS_3                8                 10
  CLUS_4                2                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        5     11      6
  12P GAIN WILD-TYPE      7     12     14
D22V9, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                5                  7
  CLUS_2               11                 12
  CLUS_3                6                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED        9      2      9      2
  12P GAIN WILD-TYPE     15      5      8      5
D22V10, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                9                 15
  CLUS_2                2                  5
  CLUS_3                9                  8
  CLUS_4                2                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = 12Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        5      4      2
  12Q GAIN WILD-TYPE     13     17     15
D23V1, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                5                 13
  CLUS_2                4                 17
  CLUS_3                2                 15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q GAIN MUTATED        3      3      1      1      3
  12Q GAIN WILD-TYPE      8      6      9     12     10
D23V2, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                3                  8
  CLUS_2                3                  6
  CLUS_3                1                  9
  CLUS_4                1                 12
  CLUS_5                3                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        2      1      4      3
  12Q GAIN WILD-TYPE      7     11     11      8
D23V3, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                2                  7
  CLUS_2                1                 11
  CLUS_3                4                 11
  CLUS_4                3                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12Q GAIN MUTATED        3      2      1      1      2      1      0
  12Q GAIN WILD-TYPE      5      6      6      6      5      4      5
D23V4, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                3                  5
  CLUS_2                2                  6
  CLUS_3                1                  6
  CLUS_4                1                  6
  CLUS_5                2                  5
  CLUS_6                1                  4
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        4      3      2      2
  12Q GAIN WILD-TYPE     10     17     10      8
D23V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                4                 10
  CLUS_2                3                 17
  CLUS_3                2                 10
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12Q GAIN MUTATED        3      1      2      2      2      0      1
  12Q GAIN WILD-TYPE      7      3      6      4      6      6     13
D23V6, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                1                  3
  CLUS_3                2                  6
  CLUS_4                2                  4
  CLUS_5                2                  6
  CLUS_6                0                  6
  CLUS_7                1                 13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        2      4      1      4
  12Q GAIN WILD-TYPE      8     18      3     15
D23V7, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                4                 18
  CLUS_3                1                  3
  CLUS_4                4                 15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        7      2      2      0
  12Q GAIN WILD-TYPE     16      6     16      6
D23V8, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                7                 16
  CLUS_2                2                  6
  CLUS_3                2                 16
  CLUS_4                0                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        3      4      4
  12Q GAIN WILD-TYPE      9     19     16
D23V9, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                3                  9
  CLUS_2                4                 19
  CLUS_3                4                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        7      2      2      0
  12Q GAIN WILD-TYPE     17      5     15      7
D23V10, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                7                 17
  CLUS_2                2                  5
  CLUS_3                2                 15
  CLUS_4                0                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = 13Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        6      4      5
  13Q GAIN WILD-TYPE     12     17     12
D24V1, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                6                 12
  CLUS_2                4                 17
  CLUS_3                5                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q GAIN MUTATED        6      1      2      1      5
  13Q GAIN WILD-TYPE      5      8      8     12      8
D24V2, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                6                  5
  CLUS_2                1                  8
  CLUS_3                2                  8
  CLUS_4                1                 12
  CLUS_5                5                  8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        4      2      5      1
  13Q GAIN WILD-TYPE      5     10     10     10
D24V3, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                4                  5
  CLUS_2                2                 10
  CLUS_3                5                 10
  CLUS_4                1                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  13Q GAIN MUTATED        4      3      2      1      1      0      1
  13Q GAIN WILD-TYPE      4      5      5      6      6      5      4
D24V4, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                4                  4
  CLUS_2                3                  5
  CLUS_3                2                  5
  CLUS_4                1                  6
  CLUS_5                1                  6
  CLUS_6                0                  5
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        7      2      5      1
  13Q GAIN WILD-TYPE      7     18      7      9
D24V5, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                7                  7
  CLUS_2                2                 18
  CLUS_3                5                  7
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  13Q GAIN MUTATED        6      1      2      3      0      2      1
  13Q GAIN WILD-TYPE      4      3      6      3      8      4     13
D24V6, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                6                  4
  CLUS_2                1                  3
  CLUS_3                2                  6
  CLUS_4                3                  3
  CLUS_5                0                  8
  CLUS_6                2                  4
  CLUS_7                1                 13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        3      9      0      3
  13Q GAIN WILD-TYPE      7     13      4     16
D24V7, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                9                 13
  CLUS_3                0                  4
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        3      5      6      1
  13Q GAIN WILD-TYPE     20      3     12      5
D24V8, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                3                 20
  CLUS_2                5                  3
  CLUS_3                6                 12
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        5      9      1
  13Q GAIN WILD-TYPE      7     14     19
D24V9, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                5                  7
  CLUS_2                9                 14
  CLUS_3                1                 19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        4      4      6      1
  13Q GAIN WILD-TYPE     20      3     11      6
D24V10, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                4                  3
  CLUS_3                6                 11
  CLUS_4                1                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = 14Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        1      3      3
  14Q GAIN WILD-TYPE     17     18     14
D25V1, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                3                 18
  CLUS_3                3                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q GAIN MUTATED        1      0      2      3      1
  14Q GAIN WILD-TYPE     10      9      8     10     12
D25V2, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                0                  9
  CLUS_3                2                  8
  CLUS_4                3                 10
  CLUS_5                1                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        0      0      1      3
  14Q GAIN WILD-TYPE      9     12     14      8
D25V3, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                0                  9
  CLUS_2                0                 12
  CLUS_3                1                 14
  CLUS_4                3                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  14Q GAIN MUTATED        0      2      0      0      0      2      0
  14Q GAIN WILD-TYPE      8      6      7      7      7      3      5
D25V4, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                2                  6
  CLUS_3                0                  7
  CLUS_4                0                  7
  CLUS_5                0                  7
  CLUS_6                2                  3
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        1      5      1      0
  14Q GAIN WILD-TYPE     13     15     11     10
D25V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                1                 13
  CLUS_2                5                 15
  CLUS_3                1                 11
  CLUS_4                0                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  14Q GAIN MUTATED        0      1      1      1      0      0      4
  14Q GAIN WILD-TYPE     10      3      7      5      8      6     10
D25V6, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                0                 10
  CLUS_2                1                  3
  CLUS_3                1                  7
  CLUS_4                1                  5
  CLUS_5                0                  8
  CLUS_6                0                  6
  CLUS_7                4                 10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        1      1      0      5
  14Q GAIN WILD-TYPE      9     21      4     14
D25V7, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                1                 21
  CLUS_3                0                  4
  CLUS_4                5                 14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        4      0      2      1
  14Q GAIN WILD-TYPE     19      8     16      5
D25V8, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                4                 19
  CLUS_2                0                  8
  CLUS_3                2                 16
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        2      1      4
  14Q GAIN WILD-TYPE     10     22     16
D25V9, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                2                 10
  CLUS_2                1                 22
  CLUS_3                4                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        5      0      1      1
  14Q GAIN WILD-TYPE     19      7     16      6
D25V10, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                0                  7
  CLUS_3                1                 16
  CLUS_4                1                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = 15Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        3      1      0
  15Q GAIN WILD-TYPE     15     20     17
D26V1, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                1                 20
  CLUS_3                0                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q GAIN MUTATED        2      1      1      0      0
  15Q GAIN WILD-TYPE      9      8      9     13     13
D26V2, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                  9
  CLUS_2                1                  8
  CLUS_3                1                  9
  CLUS_4                0                 13
  CLUS_5                0                 13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        0      2      1      1
  15Q GAIN WILD-TYPE      9     10     14     10
D26V3, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                0                  9
  CLUS_2                2                 10
  CLUS_3                1                 14
  CLUS_4                1                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  15Q GAIN MUTATED        2      0      1      0      1      0      0
  15Q GAIN WILD-TYPE      6      8      6      7      6      5      5
D26V4, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                0                  8
  CLUS_3                1                  6
  CLUS_4                0                  7
  CLUS_5                1                  6
  CLUS_6                0                  5
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        2      1      0      1
  15Q GAIN WILD-TYPE     12     19     12      9
D26V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                1                 19
  CLUS_3                0                 12
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  15Q GAIN MUTATED        2      0      1      1      0      0      0
  15Q GAIN WILD-TYPE      8      4      7      5      8      6     14
D26V6, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                0                  4
  CLUS_3                1                  7
  CLUS_4                1                  5
  CLUS_5                0                  8
  CLUS_6                0                  6
  CLUS_7                0                 14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        1      1      0      2
  15Q GAIN WILD-TYPE      9     21      4     17
D26V7, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                1                 21
  CLUS_3                0                  4
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        3      1      0      0
  15Q GAIN WILD-TYPE     20      7     18      6
D26V8, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                 20
  CLUS_2                1                  7
  CLUS_3                0                 18
  CLUS_4                0                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        2      1      1
  15Q GAIN WILD-TYPE     10     22     19
D26V9, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                 10
  CLUS_2                1                 22
  CLUS_3                1                 19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        3      1      0      0
  15Q GAIN WILD-TYPE     21      6     17      7
D26V10, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                1                  6
  CLUS_3                0                 17
  CLUS_4                0                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = 16P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        4      1      5
  16P GAIN WILD-TYPE     14     20     12
D27V1, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                4                 14
  CLUS_2                1                 20
  CLUS_3                5                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P GAIN MUTATED        4      1      0      2      3
  16P GAIN WILD-TYPE      7      8     10     11     10
D27V2, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                4                  7
  CLUS_2                1                  8
  CLUS_3                0                 10
  CLUS_4                2                 11
  CLUS_5                3                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        4      2      1      2
  16P GAIN WILD-TYPE      5     10     14      9
D27V3, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                4                  5
  CLUS_2                2                 10
  CLUS_3                1                 14
  CLUS_4                2                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P GAIN MUTATED        3      1      2      1      1      0      1
  16P GAIN WILD-TYPE      5      7      5      6      6      5      4
D27V4, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                3                  5
  CLUS_2                1                  7
  CLUS_3                2                  5
  CLUS_4                1                  6
  CLUS_5                1                  6
  CLUS_6                0                  5
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        3      1      4      2
  16P GAIN WILD-TYPE     11     19      8      8
D27V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                1                 19
  CLUS_3                4                  8
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P GAIN MUTATED        3      0      0      3      1      1      2
  16P GAIN WILD-TYPE      7      4      8      3      7      5     12
D27V6, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                0                  4
  CLUS_3                0                  8
  CLUS_4                3                  3
  CLUS_5                1                  7
  CLUS_6                1                  5
  CLUS_7                2                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        2      4      1      3
  16P GAIN WILD-TYPE      8     18      3     16
D27V7, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                4                 18
  CLUS_3                1                  3
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        3      3      3      1
  16P GAIN WILD-TYPE     20      5     15      5
D27V8, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                3                 20
  CLUS_2                3                  5
  CLUS_3                3                 15
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        2      5      3
  16P GAIN WILD-TYPE     10     18     17
D27V9, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                2                 10
  CLUS_2                5                 18
  CLUS_3                3                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        4      3      2      1
  16P GAIN WILD-TYPE     20      4     15      6
D27V10, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                3                  4
  CLUS_3                2                 15
  CLUS_4                1                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = 16Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        1      1      4
  16Q GAIN WILD-TYPE     17     20     13
D28V1, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                1                 20
  CLUS_3                4                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q GAIN MUTATED        1      1      0      2      2
  16Q GAIN WILD-TYPE     10      8     10     11     11
D28V2, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                1                  8
  CLUS_3                0                 10
  CLUS_4                2                 11
  CLUS_5                2                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        2      1      1      1
  16Q GAIN WILD-TYPE      7     11     14     10
D28V3, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                2                  7
  CLUS_2                1                 11
  CLUS_3                1                 14
  CLUS_4                1                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q GAIN MUTATED        1      0      1      1      1      0      1
  16Q GAIN WILD-TYPE      7      8      6      6      6      5      4
D28V4, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                0                  8
  CLUS_3                1                  6
  CLUS_4                1                  6
  CLUS_5                1                  6
  CLUS_6                0                  5
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        1      1      2      2
  16Q GAIN WILD-TYPE     13     19     10      8
D28V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                 13
  CLUS_2                1                 19
  CLUS_3                2                 10
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q GAIN MUTATED        1      0      0      1      1      1      2
  16Q GAIN WILD-TYPE      9      4      8      5      7      5     12
D28V6, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                0                  4
  CLUS_3                0                  8
  CLUS_4                1                  5
  CLUS_5                1                  7
  CLUS_6                1                  5
  CLUS_7                2                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        1      2      1      2
  16Q GAIN WILD-TYPE      9     20      3     17
D28V7, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                2                 20
  CLUS_3                1                  3
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        2      1      2      1
  16Q GAIN WILD-TYPE     21      7     16      5
D28V8, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                1                  7
  CLUS_3                2                 16
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        0      3      3
  16Q GAIN WILD-TYPE     12     20     17
D28V9, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                3                 20
  CLUS_3                3                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        2      1      2      1
  16Q GAIN WILD-TYPE     22      6     15      6
D28V10, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                1                  6
  CLUS_3                2                 15
  CLUS_4                1                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = 17P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        3      5      1
  17P GAIN WILD-TYPE     15     16     16
D29V1, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                5                 16
  CLUS_3                1                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P GAIN MUTATED        3      1      1      2      2
  17P GAIN WILD-TYPE      8      8      9     11     11
D29V2, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                3                  8
  CLUS_2                1                  8
  CLUS_3                1                  9
  CLUS_4                2                 11
  CLUS_5                2                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        2      2      2      2
  17P GAIN WILD-TYPE      7     10     13      9
D29V3, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                2                  7
  CLUS_2                2                 10
  CLUS_3                2                 13
  CLUS_4                2                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17P GAIN MUTATED        2      0      1      2      1      1      1
  17P GAIN WILD-TYPE      6      8      6      5      6      4      4
D29V4, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                0                  8
  CLUS_3                1                  6
  CLUS_4                2                  5
  CLUS_5                1                  6
  CLUS_6                1                  4
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        4      3      1      1
  17P GAIN WILD-TYPE     10     17     11      9
D29V5, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                4                 10
  CLUS_2                3                 17
  CLUS_3                1                 11
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17P GAIN MUTATED        4      0      1      0      1      1      2
  17P GAIN WILD-TYPE      6      4      7      6      7      5     12
D29V6, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                4                  6
  CLUS_2                0                  4
  CLUS_3                1                  7
  CLUS_4                0                  6
  CLUS_5                1                  7
  CLUS_6                1                  5
  CLUS_7                2                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        0      6      0      3
  17P GAIN WILD-TYPE     10     16      4     16
D29V7, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                 10
  CLUS_2                6                 16
  CLUS_3                0                  4
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        2      4      2      1
  17P GAIN WILD-TYPE     21      4     16      5
D29V8, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                4                  4
  CLUS_3                2                 16
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        0      6      3
  17P GAIN WILD-TYPE     12     17     17
D29V9, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                6                 17
  CLUS_3                3                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        2      3      3      1
  17P GAIN WILD-TYPE     22      4     14      6
D29V10, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                3                  4
  CLUS_3                3                 14
  CLUS_4                1                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = 17Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        8      6      4
  17Q GAIN WILD-TYPE     10     15     13
D30V1, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                8                 10
  CLUS_2                6                 15
  CLUS_3                4                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q GAIN MUTATED        6      2      1      4      5
  17Q GAIN WILD-TYPE      5      7      9      9      8
D30V2, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                6                  5
  CLUS_2                2                  7
  CLUS_3                1                  9
  CLUS_4                4                  9
  CLUS_5                5                  8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        4      3      4      5
  17Q GAIN WILD-TYPE      5      9     11      6
D30V3, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                4                  5
  CLUS_2                3                  9
  CLUS_3                4                 11
  CLUS_4                5                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17Q GAIN MUTATED        4      1      2      2      3      2      2
  17Q GAIN WILD-TYPE      4      7      5      5      4      3      3
D30V4, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                4                  4
  CLUS_2                1                  7
  CLUS_3                2                  5
  CLUS_4                2                  5
  CLUS_5                3                  4
  CLUS_6                2                  3
  CLUS_7                2                  3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        6      6      4      2
  17Q GAIN WILD-TYPE      8     14      8      8
D30V5, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                6                  8
  CLUS_2                6                 14
  CLUS_3                4                  8
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17Q GAIN MUTATED        6      0      2      2      2      2      4
  17Q GAIN WILD-TYPE      4      4      6      4      6      4     10
D30V6, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                6                  4
  CLUS_2                0                  4
  CLUS_3                2                  6
  CLUS_4                2                  4
  CLUS_5                2                  6
  CLUS_6                2                  4
  CLUS_7                4                 10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        2      9      0      7
  17Q GAIN WILD-TYPE      8     13      4     12
D30V7, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                9                 13
  CLUS_3                0                  4
  CLUS_4                7                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        7      5      5      1
  17Q GAIN WILD-TYPE     16      3     13      5
D30V8, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                7                 16
  CLUS_2                5                  3
  CLUS_3                5                 13
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        3      9      6
  17Q GAIN WILD-TYPE      9     14     14
D30V9, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                3                  9
  CLUS_2                9                 14
  CLUS_3                6                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        8      4      5      1
  17Q GAIN WILD-TYPE     16      3     12      6
D30V10, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                8                 16
  CLUS_2                4                  3
  CLUS_3                5                 12
  CLUS_4                1                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = 18P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        6      8      4
  18P GAIN WILD-TYPE     12     13     13
D31V1, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                6                 12
  CLUS_2                8                 13
  CLUS_3                4                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P GAIN MUTATED        1      6      2      6      3
  18P GAIN WILD-TYPE     10      3      8      7     10
D31V2, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                6                  3
  CLUS_3                2                  8
  CLUS_4                6                  7
  CLUS_5                3                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        2      3      5      5
  18P GAIN WILD-TYPE      7      9     10      6
D31V3, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                2                  7
  CLUS_2                3                  9
  CLUS_3                5                 10
  CLUS_4                5                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P GAIN MUTATED        1      2      3      3      3      2      1
  18P GAIN WILD-TYPE      7      6      4      4      4      3      4
D31V4, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                2                  6
  CLUS_3                3                  4
  CLUS_4                3                  4
  CLUS_5                3                  4
  CLUS_6                2                  3
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        2     10      2      4
  18P GAIN WILD-TYPE     12     10     10      6
D31V5, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                2                 12
  CLUS_2               10                 10
  CLUS_3                2                 10
  CLUS_4                4                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P GAIN MUTATED        1      1      3      1      4      1      7
  18P GAIN WILD-TYPE      9      3      5      5      4      5      7
D31V6, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                1                  3
  CLUS_3                3                  5
  CLUS_4                1                  5
  CLUS_5                4                  4
  CLUS_6                1                  5
  CLUS_7                7                  7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        1      6      2      9
  18P GAIN WILD-TYPE      9     16      2     10
D31V7, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                6                 16
  CLUS_3                2                  2
  CLUS_4                9                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        8      1      5      4
  18P GAIN WILD-TYPE     15      7     13      2
D31V8, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                8                 15
  CLUS_2                1                  7
  CLUS_3                5                 13
  CLUS_4                4                  2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        3      6      9
  18P GAIN WILD-TYPE      9     17     11
D31V9, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                3                  9
  CLUS_2                6                 17
  CLUS_3                9                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        8      1      5      4
  18P GAIN WILD-TYPE     16      6     12      3
D31V10, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                8                 16
  CLUS_2                1                  6
  CLUS_3                5                 12
  CLUS_4                4                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = 18Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        3      6      5
  18Q GAIN WILD-TYPE     15     15     12
D32V1, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                6                 15
  CLUS_3                5                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q GAIN MUTATED        0      4      3      5      2
  18Q GAIN WILD-TYPE     11      5      7      8     11
D32V2, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                4                  5
  CLUS_3                3                  7
  CLUS_4                5                  8
  CLUS_5                2                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        1      2      3      4
  18Q GAIN WILD-TYPE      8     10     12      7
D32V3, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                1                  8
  CLUS_2                2                 10
  CLUS_3                3                 12
  CLUS_4                4                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18Q GAIN MUTATED        0      1      2      2      2      2      1
  18Q GAIN WILD-TYPE      8      7      5      5      5      3      4
D32V4, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                1                  7
  CLUS_3                2                  5
  CLUS_4                2                  5
  CLUS_5                2                  5
  CLUS_6                2                  3
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        1      8      2      3
  18Q GAIN WILD-TYPE     13     12     10      7
D32V5, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                1                 13
  CLUS_2                8                 12
  CLUS_3                2                 10
  CLUS_4                3                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18Q GAIN MUTATED        0      1      4      1      2      1      5
  18Q GAIN WILD-TYPE     10      3      4      5      6      5      9
D32V6, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                0                 10
  CLUS_2                1                  3
  CLUS_3                4                  4
  CLUS_4                1                  5
  CLUS_5                2                  6
  CLUS_6                1                  5
  CLUS_7                5                  9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        2      3      1      8
  18Q GAIN WILD-TYPE      8     19      3     11
D32V7, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                3                 19
  CLUS_3                1                  3
  CLUS_4                8                 11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        8      0      3      3
  18Q GAIN WILD-TYPE     15      8     15      3
D32V8, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                8                 15
  CLUS_2                0                  8
  CLUS_3                3                 15
  CLUS_4                3                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        3      3      8
  18Q GAIN WILD-TYPE      9     20     12
D32V9, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                3                  9
  CLUS_2                3                 20
  CLUS_3                8                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        8      0      3      3
  18Q GAIN WILD-TYPE     16      7     14      4
D32V10, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                8                 16
  CLUS_2                0                  7
  CLUS_3                3                 14
  CLUS_4                3                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = 19P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        6      7     11
  19P GAIN WILD-TYPE     12     14      6
D33V1, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                6                 12
  CLUS_2                7                 14
  CLUS_3               11                  6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P GAIN MUTATED        6      1      3      7      7
  19P GAIN WILD-TYPE      5      8      7      6      6
D33V2, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                6                  5
  CLUS_2                1                  8
  CLUS_3                3                  7
  CLUS_4                7                  6
  CLUS_5                7                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED        5      4      5      7
  19P GAIN WILD-TYPE      4      8     10      4
D33V3, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                5                  4
  CLUS_2                4                  8
  CLUS_3                5                 10
  CLUS_4                7                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19P GAIN MUTATED        5      3      2      3      4      3      1
  19P GAIN WILD-TYPE      3      5      5      4      3      2      4
D33V4, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                5                  3
  CLUS_2                3                  5
  CLUS_3                2                  5
  CLUS_4                3                  4
  CLUS_5                4                  3
  CLUS_6                3                  2
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED        8     10      4      2
  19P GAIN WILD-TYPE      6     10      8      8
D33V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                8                  6
  CLUS_2               10                 10
  CLUS_3                4                  8
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19P GAIN MUTATED        7      0      3      2      3      2      7
  19P GAIN WILD-TYPE      3      4      5      4      5      4      7
D33V6, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                7                  3
  CLUS_2                0                  4
  CLUS_3                3                  5
  CLUS_4                2                  4
  CLUS_5                3                  5
  CLUS_6                2                  4
  CLUS_7                7                  7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED        5      7      2     10
  19P GAIN WILD-TYPE      5     15      2      9
D33V7, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                5                  5
  CLUS_2                7                 15
  CLUS_3                2                  2
  CLUS_4               10                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED       10      5      5      4
  19P GAIN WILD-TYPE     13      3     13      2
D33V8, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               10                 13
  CLUS_2                5                  3
  CLUS_3                5                 13
  CLUS_4                4                  2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        5      8     11
  19P GAIN WILD-TYPE      7     15      9
D33V9, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                5                  7
  CLUS_2                8                 15
  CLUS_3               11                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED       11      4      5      4
  19P GAIN WILD-TYPE     13      3     12      3
D33V10, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               11                 13
  CLUS_2                4                  3
  CLUS_3                5                 12
  CLUS_4                4                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = 19Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        8      8     12
  19Q GAIN WILD-TYPE     10     13      5
D34V1, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                8                 10
  CLUS_2                8                 13
  CLUS_3               12                  5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q GAIN MUTATED        8      2      3      6      9
  19Q GAIN WILD-TYPE      3      7      7      7      4
D34V2, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                8                  3
  CLUS_2                2                  7
  CLUS_3                3                  7
  CLUS_4                6                  7
  CLUS_5                9                  4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED        6      5      7      6
  19Q GAIN WILD-TYPE      3      7      8      5
D34V3, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                6                  3
  CLUS_2                5                  7
  CLUS_3                7                  8
  CLUS_4                6                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q GAIN MUTATED        5      4      4      4      4      2      1
  19Q GAIN WILD-TYPE      3      4      3      3      3      3      4
D34V4, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                5                  3
  CLUS_2                4                  4
  CLUS_3                4                  3
  CLUS_4                4                  3
  CLUS_5                4                  3
  CLUS_6                2                  3
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED        9      9      7      3
  19Q GAIN WILD-TYPE      5     11      5      7
D34V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                9                  5
  CLUS_2                9                 11
  CLUS_3                7                  5
  CLUS_4                3                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q GAIN MUTATED        7      1      3      5      3      3      6
  19Q GAIN WILD-TYPE      3      3      5      1      5      3      8
D34V6, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                7                  3
  CLUS_2                1                  3
  CLUS_3                3                  5
  CLUS_4                5                  1
  CLUS_5                3                  5
  CLUS_6                3                  3
  CLUS_7                6                  8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED        6     10      2     10
  19Q GAIN WILD-TYPE      4     12      2      9
D34V7, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                6                  4
  CLUS_2               10                 12
  CLUS_3                2                  2
  CLUS_4               10                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED       12      5      8      3
  19Q GAIN WILD-TYPE     11      3     10      3
D34V8, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               12                 11
  CLUS_2                5                  3
  CLUS_3                8                 10
  CLUS_4                3                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        7     11     10
  19Q GAIN WILD-TYPE      5     12     10
D34V9, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                7                  5
  CLUS_2               11                 12
  CLUS_3               10                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED       13      4      8      3
  19Q GAIN WILD-TYPE     11      3      9      4
D34V10, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               13                 11
  CLUS_2                4                  3
  CLUS_3                8                  9
  CLUS_4                3                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = 20P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       13     11     13
  20P GAIN WILD-TYPE      5     10      4
D35V1, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               13                  5
  CLUS_2               11                 10
  CLUS_3               13                  4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P GAIN MUTATED        7      8      5      9      8
  20P GAIN WILD-TYPE      4      1      5      4      5
D35V2, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                7                  4
  CLUS_2                8                  1
  CLUS_3                5                  5
  CLUS_4                9                  4
  CLUS_5                8                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED        4      6     13      7
  20P GAIN WILD-TYPE      5      6      2      4
D35V3, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                4                  5
  CLUS_2                6                  6
  CLUS_3               13                  2
  CLUS_4                7                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P GAIN MUTATED        6      6      2      5      5      3      3
  20P GAIN WILD-TYPE      2      2      5      2      2      2      2
D35V4, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                6                  2
  CLUS_2                6                  2
  CLUS_3                2                  5
  CLUS_4                5                  2
  CLUS_5                5                  2
  CLUS_6                3                  2
  CLUS_7                3                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED       10     13      7      7
  20P GAIN WILD-TYPE      4      7      5      3
D35V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               10                  4
  CLUS_2               13                  7
  CLUS_3                7                  5
  CLUS_4                7                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P GAIN MUTATED        7      3      4      4      7      3      9
  20P GAIN WILD-TYPE      3      1      4      2      1      3      5
D35V6, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                7                  3
  CLUS_2                3                  1
  CLUS_3                4                  4
  CLUS_4                4                  2
  CLUS_5                7                  1
  CLUS_6                3                  3
  CLUS_7                9                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED        7     15      2     12
  20P GAIN WILD-TYPE      3      7      2      7
D35V7, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                7                  3
  CLUS_2               15                  7
  CLUS_3                2                  2
  CLUS_4               12                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED       14      6     13      3
  20P GAIN WILD-TYPE      9      2      5      3
D35V8, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               14                  9
  CLUS_2                6                  2
  CLUS_3               13                  5
  CLUS_4                3                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        9     17     10
  20P GAIN WILD-TYPE      3      6     10
D35V9, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                9                  3
  CLUS_2               17                  6
  CLUS_3               10                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED       15      5     13      3
  20P GAIN WILD-TYPE      9      2      4      4
D35V10, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               15                  9
  CLUS_2                5                  2
  CLUS_3               13                  4
  CLUS_4                3                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = 20Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       15     13     16
  20Q GAIN WILD-TYPE      3      8      1
D36V1, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               15                  3
  CLUS_2               13                  8
  CLUS_3               16                  1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q GAIN MUTATED        9      8      7     10     10
  20Q GAIN WILD-TYPE      2      1      3      3      3
D36V2, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                9                  2
  CLUS_2                8                  1
  CLUS_3                7                  3
  CLUS_4               10                  3
  CLUS_5               10                  3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED        7      8     14      7
  20Q GAIN WILD-TYPE      2      4      1      4
D36V3, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                7                  2
  CLUS_2                8                  4
  CLUS_3               14                  1
  CLUS_4                7                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q GAIN MUTATED        7      6      5      6      5      3      4
  20Q GAIN WILD-TYPE      1      2      2      1      2      2      1
D36V4, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                7                  1
  CLUS_2                6                  2
  CLUS_3                5                  2
  CLUS_4                6                  1
  CLUS_5                5                  2
  CLUS_6                3                  2
  CLUS_7                4                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       11     15     10      8
  20Q GAIN WILD-TYPE      3      5      2      2
D36V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               11                  3
  CLUS_2               15                  5
  CLUS_3               10                  2
  CLUS_4                8                  2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q GAIN MUTATED        8      3      6      5      7      5     10
  20Q GAIN WILD-TYPE      2      1      2      1      1      1      4
D36V6, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                8                  2
  CLUS_2                3                  1
  CLUS_3                6                  2
  CLUS_4                5                  1
  CLUS_5                7                  1
  CLUS_6                5                  1
  CLUS_7               10                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED        9     18      3     13
  20Q GAIN WILD-TYPE      1      4      1      6
D36V7, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                9                  1
  CLUS_2               18                  4
  CLUS_3                3                  1
  CLUS_4               13                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       17      6     16      4
  20Q GAIN WILD-TYPE      6      2      2      2
D36V8, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               17                  6
  CLUS_2                6                  2
  CLUS_3               16                  2
  CLUS_4                4                  2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       11     19     13
  20Q GAIN WILD-TYPE      1      4      7
D36V9, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               11                  1
  CLUS_2               19                  4
  CLUS_3               13                  7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       18      5     15      5
  20Q GAIN WILD-TYPE      6      2      2      2
D36V10, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               18                  6
  CLUS_2                5                  2
  CLUS_3               15                  2
  CLUS_4                5                  2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = 21Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        7      3      8
  21Q GAIN WILD-TYPE     11     18      9
D37V1, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                7                 11
  CLUS_2                3                 18
  CLUS_3                8                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q GAIN MUTATED        4      4      2      6      2
  21Q GAIN WILD-TYPE      7      5      8      7     11
D37V2, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                4                  7
  CLUS_2                4                  5
  CLUS_3                2                  8
  CLUS_4                6                  7
  CLUS_5                2                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        3      6      5      2
  21Q GAIN WILD-TYPE      6      6     10      9
D37V3, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                3                  6
  CLUS_2                6                  6
  CLUS_3                5                 10
  CLUS_4                2                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  21Q GAIN MUTATED        3      3      2      3      1      1      3
  21Q GAIN WILD-TYPE      5      5      5      4      6      4      2
D37V4, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                3                  5
  CLUS_2                3                  5
  CLUS_3                2                  5
  CLUS_4                3                  4
  CLUS_5                1                  6
  CLUS_6                1                  4
  CLUS_7                3                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        5      6      3      4
  21Q GAIN WILD-TYPE      9     14      9      6
D37V5, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                5                  9
  CLUS_2                6                 14
  CLUS_3                3                  9
  CLUS_4                4                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  21Q GAIN MUTATED        4      1      2      1      3      1      6
  21Q GAIN WILD-TYPE      6      3      6      5      5      5      8
D37V6, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                4                  6
  CLUS_2                1                  3
  CLUS_3                2                  6
  CLUS_4                1                  5
  CLUS_5                3                  5
  CLUS_6                1                  5
  CLUS_7                6                  8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        3      7      2      6
  21Q GAIN WILD-TYPE      7     15      2     13
D37V7, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                7                 15
  CLUS_3                2                  2
  CLUS_4                6                 13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        8      3      4      3
  21Q GAIN WILD-TYPE     15      5     14      3
D37V8, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                8                 15
  CLUS_2                3                  5
  CLUS_3                4                 14
  CLUS_4                3                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        4      7      7
  21Q GAIN WILD-TYPE      8     16     13
D37V9, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                4                  8
  CLUS_2                7                 16
  CLUS_3                7                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        8      2      5      3
  21Q GAIN WILD-TYPE     16      5     12      4
D37V10, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                8                 16
  CLUS_2                2                  5
  CLUS_3                5                 12
  CLUS_4                3                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = 22Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        3      2      3
  22Q GAIN WILD-TYPE     15     19     14
D38V1, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                2                 19
  CLUS_3                3                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q GAIN MUTATED        1      2      1      2      2
  22Q GAIN WILD-TYPE     10      7      9     11     11
D38V2, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                2                  7
  CLUS_3                1                  9
  CLUS_4                2                 11
  CLUS_5                2                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        1      2      0      1
  22Q GAIN WILD-TYPE      8     10     15     10
D38V3, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                  8
  CLUS_2                2                 10
  CLUS_3                0                 15
  CLUS_4                1                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q GAIN MUTATED        0      1      2      0      0      1      0
  22Q GAIN WILD-TYPE      8      7      5      7      7      4      5
D38V4, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                1                  7
  CLUS_3                2                  5
  CLUS_4                0                  7
  CLUS_5                0                  7
  CLUS_6                1                  4
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        1      3      2      2
  22Q GAIN WILD-TYPE     13     17     10      8
D38V5, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                 13
  CLUS_2                3                 17
  CLUS_3                2                 10
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q GAIN MUTATED        1      0      1      2      1      1      2
  22Q GAIN WILD-TYPE      9      4      7      4      7      5     12
D38V6, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                0                  4
  CLUS_3                1                  7
  CLUS_4                2                  4
  CLUS_5                1                  7
  CLUS_6                1                  5
  CLUS_7                2                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        1      3      1      3
  22Q GAIN WILD-TYPE      9     19      3     16
D38V7, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                3                 19
  CLUS_3                1                  3
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        4      1      2      1
  22Q GAIN WILD-TYPE     19      7     16      5
D38V8, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                4                 19
  CLUS_2                1                  7
  CLUS_3                2                 16
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        2      3      3
  22Q GAIN WILD-TYPE     10     20     17
D38V9, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                2                 10
  CLUS_2                3                 20
  CLUS_3                3                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        4      1      2      1
  22Q GAIN WILD-TYPE     20      6     15      6
D38V10, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                1                  6
  CLUS_3                2                 15
  CLUS_4                1                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = XP GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP GAIN MUTATED        6      6      6
  XP GAIN WILD-TYPE     12     15     11
D39V1, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               6                12
  CLUS_2               6                15
  CLUS_3               6                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XP GAIN MUTATED        4      6      4      4      0
  XP GAIN WILD-TYPE      7      3      6      9     13
D39V2, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               4                 7
  CLUS_2               6                 3
  CLUS_3               4                 6
  CLUS_4               4                 9
  CLUS_5               0                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP GAIN MUTATED        2      6      5      2
  XP GAIN WILD-TYPE      7      6     10      9
D39V3, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               2                 7
  CLUS_2               6                 6
  CLUS_3               5                10
  CLUS_4               2                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XP GAIN MUTATED        3      5      2      1      1      1      2
  XP GAIN WILD-TYPE      5      3      5      6      6      4      3
D39V4, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               5                 3
  CLUS_3               2                 5
  CLUS_4               1                 6
  CLUS_5               1                 6
  CLUS_6               1                 4
  CLUS_7               2                 3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP GAIN MUTATED        5      5      1      7
  XP GAIN WILD-TYPE      9     15     11      3
D39V5, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               5                 9
  CLUS_2               5                15
  CLUS_3               1                11
  CLUS_4               7                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XP GAIN MUTATED        4      2      2      1      5      0      4
  XP GAIN WILD-TYPE      6      2      6      5      3      6     10
D39V6, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               4                 6
  CLUS_2               2                 2
  CLUS_3               2                 6
  CLUS_4               1                 5
  CLUS_5               5                 3
  CLUS_6               0                 6
  CLUS_7               4                10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP GAIN MUTATED        3      7      2      5
  XP GAIN WILD-TYPE      7     15      2     14
D39V7, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               7                15
  CLUS_3               2                 2
  CLUS_4               5                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP GAIN MUTATED        7      4      4      2
  XP GAIN WILD-TYPE     16      4     14      4
D39V8, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               7                16
  CLUS_2               4                 4
  CLUS_3               4                14
  CLUS_4               2                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP GAIN MUTATED        6      7      4
  XP GAIN WILD-TYPE      6     16     16
D39V9, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               6                 6
  CLUS_2               7                16
  CLUS_3               4                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP GAIN MUTATED        7      4      4      2
  XP GAIN WILD-TYPE     17      3     13      5
D39V10, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               7                17
  CLUS_2               4                 3
  CLUS_3               4                13
  CLUS_4               2                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = XQ GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        4      5      6
  XQ GAIN WILD-TYPE     14     16     11
D40V1, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               4                14
  CLUS_2               5                16
  CLUS_3               6                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ GAIN MUTATED        4      3      4      3      1
  XQ GAIN WILD-TYPE      7      6      6     10     12
D40V2, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               4                 7
  CLUS_2               3                 6
  CLUS_3               4                 6
  CLUS_4               3                10
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        3      5      4      2
  XQ GAIN WILD-TYPE      6      7     11      9
D40V3, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               3                 6
  CLUS_2               5                 7
  CLUS_3               4                11
  CLUS_4               2                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ GAIN MUTATED        3      4      1      1      2      1      2
  XQ GAIN WILD-TYPE      5      4      6      6      5      4      3
D40V4, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               4                 4
  CLUS_3               1                 6
  CLUS_4               1                 6
  CLUS_5               2                 5
  CLUS_6               1                 4
  CLUS_7               2                 3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        5      5      2      3
  XQ GAIN WILD-TYPE      9     15     10      7
D40V5, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               5                 9
  CLUS_2               5                15
  CLUS_3               2                10
  CLUS_4               3                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ GAIN MUTATED        4      1      2      0      3      1      4
  XQ GAIN WILD-TYPE      6      3      6      6      5      5     10
D40V6, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               4                 6
  CLUS_2               1                 3
  CLUS_3               2                 6
  CLUS_4               0                 6
  CLUS_5               3                 5
  CLUS_6               1                 5
  CLUS_7               4                10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        2      7      1      4
  XQ GAIN WILD-TYPE      8     15      3     15
D40V7, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               7                15
  CLUS_3               1                 3
  CLUS_4               4                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        4      4      4      2
  XQ GAIN WILD-TYPE     19      4     14      4
D40V8, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               4                19
  CLUS_2               4                 4
  CLUS_3               4                14
  CLUS_4               2                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        3      6      5
  XQ GAIN WILD-TYPE      9     17     15
D40V9, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               3                 9
  CLUS_2               6                17
  CLUS_3               5                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        4      4      3      3
  XQ GAIN WILD-TYPE     20      3     14      4
D40V10, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               4                20
  CLUS_2               4                 3
  CLUS_3               3                14
  CLUS_4               3                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = 1P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        4      2      3
  1P LOSS WILD-TYPE     14     19     14
D41V1, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               4                14
  CLUS_2               2                19
  CLUS_3               3                14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P LOSS MUTATED        2      2      0      3      2
  1P LOSS WILD-TYPE      9      7     10     10     11
D41V2, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               2                 9
  CLUS_2               2                 7
  CLUS_3               0                10
  CLUS_4               3                10
  CLUS_5               2                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        1      4      2      1
  1P LOSS WILD-TYPE      8      8     13     10
D41V3, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               1                 8
  CLUS_2               4                 8
  CLUS_3               2                13
  CLUS_4               1                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1P LOSS MUTATED        2      2      2      0      0      1      1
  1P LOSS WILD-TYPE      6      6      5      7      7      4      4
D41V4, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               2                 6
  CLUS_2               2                 6
  CLUS_3               2                 5
  CLUS_4               0                 7
  CLUS_5               0                 7
  CLUS_6               1                 4
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        3      3      2      1
  1P LOSS WILD-TYPE     11     17     10      9
D41V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               3                11
  CLUS_2               3                17
  CLUS_3               2                10
  CLUS_4               1                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1P LOSS MUTATED        2      1      0      3      0      0      3
  1P LOSS WILD-TYPE      8      3      8      3      8      6     11
D41V6, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               1                 3
  CLUS_3               0                 8
  CLUS_4               3                 3
  CLUS_5               0                 8
  CLUS_6               0                 6
  CLUS_7               3                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        3      1      0      5
  1P LOSS WILD-TYPE      7     21      4     14
D41V7, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               1                21
  CLUS_3               0                 4
  CLUS_4               5                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        8      0      1      0
  1P LOSS WILD-TYPE     15      8     17      6
D41V8, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               8                15
  CLUS_2               0                 8
  CLUS_3               1                17
  CLUS_4               0                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        4      1      4
  1P LOSS WILD-TYPE      8     22     16
D41V9, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               4                 8
  CLUS_2               1                22
  CLUS_3               4                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        8      0      1      0
  1P LOSS WILD-TYPE     16      7     16      7
D41V10, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               8                16
  CLUS_2               0                 7
  CLUS_3               1                16
  CLUS_4               0                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = 1Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        3      2      4
  1Q LOSS WILD-TYPE     15     19     13
D42V1, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3                15
  CLUS_2               2                19
  CLUS_3               4                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q LOSS MUTATED        3      2      0      2      2
  1Q LOSS WILD-TYPE      8      7     10     11     11
D42V2, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3                 8
  CLUS_2               2                 7
  CLUS_3               0                10
  CLUS_4               2                11
  CLUS_5               2                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        2      3      2      1
  1Q LOSS WILD-TYPE      7      9     13     10
D42V3, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               2                 7
  CLUS_2               3                 9
  CLUS_3               2                13
  CLUS_4               1                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1Q LOSS MUTATED        3      2      2      0      0      1      0
  1Q LOSS WILD-TYPE      5      6      5      7      7      4      5
D42V4, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               2                 6
  CLUS_3               2                 5
  CLUS_4               0                 7
  CLUS_5               0                 7
  CLUS_6               1                 4
  CLUS_7               0                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        4      2      2      1
  1Q LOSS WILD-TYPE     10     18     10      9
D42V5, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               4                10
  CLUS_2               2                18
  CLUS_3               2                10
  CLUS_4               1                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1Q LOSS MUTATED        3      1      0      3      0      0      2
  1Q LOSS WILD-TYPE      7      3      8      3      8      6     12
D42V6, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               1                 3
  CLUS_3               0                 8
  CLUS_4               3                 3
  CLUS_5               0                 8
  CLUS_6               0                 6
  CLUS_7               2                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        3      2      0      4
  1Q LOSS WILD-TYPE      7     20      4     15
D42V7, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               2                20
  CLUS_3               0                 4
  CLUS_4               4                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        7      1      1      0
  1Q LOSS WILD-TYPE     16      7     17      6
D42V8, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               7                16
  CLUS_2               1                 7
  CLUS_3               1                17
  CLUS_4               0                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        4      2      3
  1Q LOSS WILD-TYPE      8     21     17
D42V9, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               4                 8
  CLUS_2               2                21
  CLUS_3               3                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        7      1      1      0
  1Q LOSS WILD-TYPE     17      6     16      7
D42V10, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               7                17
  CLUS_2               1                 6
  CLUS_3               1                16
  CLUS_4               0                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = 3P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        2     12      6
  3P LOSS WILD-TYPE     16      9     11
D43V1, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               2                16
  CLUS_2              12                 9
  CLUS_3               6                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P LOSS MUTATED        4      2      6      3      5
  3P LOSS WILD-TYPE      7      7      4     10      8
D43V2, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               4                 7
  CLUS_2               2                 7
  CLUS_3               6                 4
  CLUS_4               3                10
  CLUS_5               5                 8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        4      3      4      6
  3P LOSS WILD-TYPE      5      9     11      5
D43V3, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               4                 5
  CLUS_2               3                 9
  CLUS_3               4                11
  CLUS_4               6                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P LOSS MUTATED        4      3      2      3      3      2      0
  3P LOSS WILD-TYPE      4      5      5      4      4      3      5
D43V4, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               4                 4
  CLUS_2               3                 5
  CLUS_3               2                 5
  CLUS_4               3                 4
  CLUS_5               3                 4
  CLUS_6               2                 3
  CLUS_7               0                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        6      9      5      0
  3P LOSS WILD-TYPE      8     11      7     10
D43V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               6                 8
  CLUS_2               9                11
  CLUS_3               5                 7
  CLUS_4               0                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P LOSS MUTATED        4      1      5      2      0      2      6
  3P LOSS WILD-TYPE      6      3      3      4      8      4      8
D43V6, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               4                 6
  CLUS_2               1                 3
  CLUS_3               5                 3
  CLUS_4               2                 4
  CLUS_5               0                 8
  CLUS_6               2                 4
  CLUS_7               6                 8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        5      7      0      8
  3P LOSS WILD-TYPE      5     15      4     11
D43V7, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               5                 5
  CLUS_2               7                15
  CLUS_3               0                 4
  CLUS_4               8                11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        8      3      6      3
  3P LOSS WILD-TYPE     15      5     12      3
D43V8, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               8                15
  CLUS_2               3                 5
  CLUS_3               6                12
  CLUS_4               3                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        5      6      9
  3P LOSS WILD-TYPE      7     17     11
D43V9, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               5                 7
  CLUS_2               6                17
  CLUS_3               9                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        9      3      4      4
  3P LOSS WILD-TYPE     15      4     13      3
D43V10, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               9                15
  CLUS_2               3                 4
  CLUS_3               4                13
  CLUS_4               4                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = 3Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        2      8      4
  3Q LOSS WILD-TYPE     16     13     13
D44V1, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               2                16
  CLUS_2               8                13
  CLUS_3               4                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q LOSS MUTATED        3      2      4      1      4
  3Q LOSS WILD-TYPE      8      7      6     12      9
D44V2, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               3                 8
  CLUS_2               2                 7
  CLUS_3               4                 6
  CLUS_4               1                12
  CLUS_5               4                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        3      2      4      3
  3Q LOSS WILD-TYPE      6     10     11      8
D44V3, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               3                 6
  CLUS_2               2                10
  CLUS_3               4                11
  CLUS_4               3                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q LOSS MUTATED        3      3      2      2      1      1      0
  3Q LOSS WILD-TYPE      5      5      5      5      6      4      5
D44V4, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               3                 5
  CLUS_3               2                 5
  CLUS_4               2                 5
  CLUS_5               1                 6
  CLUS_6               1                 4
  CLUS_7               0                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        4      5      5      0
  3Q LOSS WILD-TYPE     10     15      7     10
D44V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               4                10
  CLUS_2               5                15
  CLUS_3               5                 7
  CLUS_4               0                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q LOSS MUTATED        3      1      3      2      0      2      3
  3Q LOSS WILD-TYPE      7      3      5      4      8      4     11
D44V6, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               1                 3
  CLUS_3               3                 5
  CLUS_4               2                 4
  CLUS_5               0                 8
  CLUS_6               2                 4
  CLUS_7               3                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        4      6      0      4
  3Q LOSS WILD-TYPE      6     16      4     15
D44V7, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               4                 6
  CLUS_2               6                16
  CLUS_3               0                 4
  CLUS_4               4                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        5      2      6      1
  3Q LOSS WILD-TYPE     18      6     12      5
D44V8, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               5                18
  CLUS_2               2                 6
  CLUS_3               6                12
  CLUS_4               1                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        5      5      4
  3Q LOSS WILD-TYPE      7     18     16
D44V9, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               5                 7
  CLUS_2               5                18
  CLUS_3               4                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        6      2      4      2
  3Q LOSS WILD-TYPE     18      5     13      5
D44V10, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               6                18
  CLUS_2               2                 5
  CLUS_3               4                13
  CLUS_4               2                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = 4P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       10      8     13
  4P LOSS WILD-TYPE      8     13      4
D45V1, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              10                 8
  CLUS_2               8                13
  CLUS_3              13                 4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P LOSS MUTATED        9      7      3      5      7
  4P LOSS WILD-TYPE      2      2      7      8      6
D45V2, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               9                 2
  CLUS_2               7                 2
  CLUS_3               3                 7
  CLUS_4               5                 8
  CLUS_5               7                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED        7      4     10      5
  4P LOSS WILD-TYPE      2      8      5      6
D45V3, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               7                 2
  CLUS_2               4                 8
  CLUS_3              10                 5
  CLUS_4               5                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4P LOSS MUTATED        6      5      6      3      4      2      0
  4P LOSS WILD-TYPE      2      3      1      4      3      3      5
D45V4, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               6                 2
  CLUS_2               5                 3
  CLUS_3               6                 1
  CLUS_4               3                 4
  CLUS_5               4                 3
  CLUS_6               2                 3
  CLUS_7               0                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED       10      8      8      5
  4P LOSS WILD-TYPE      4     12      4      5
D45V5, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              10                 4
  CLUS_2               8                12
  CLUS_3               8                 4
  CLUS_4               5                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4P LOSS MUTATED        7      4      2      4      3      4      7
  4P LOSS WILD-TYPE      3      0      6      2      5      2      7
D45V6, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               7                 3
  CLUS_2               4                 0
  CLUS_3               2                 6
  CLUS_4               4                 2
  CLUS_5               3                 5
  CLUS_6               4                 2
  CLUS_7               7                 7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED        9     13      1      8
  4P LOSS WILD-TYPE      1      9      3     11
D45V7, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               9                 1
  CLUS_2              13                 9
  CLUS_3               1                 3
  CLUS_4               8                11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED       14      5     10      2
  4P LOSS WILD-TYPE      9      3      8      4
D45V8, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              14                 9
  CLUS_2               5                 3
  CLUS_3              10                 8
  CLUS_4               2                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        9     14      8
  4P LOSS WILD-TYPE      3      9     12
D45V9, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               9                 3
  CLUS_2              14                 9
  CLUS_3               8                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED       14      5     10      2
  4P LOSS WILD-TYPE     10      2      7      5
D45V10, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              14                10
  CLUS_2               5                 2
  CLUS_3              10                 7
  CLUS_4               2                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = 4Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       12      9     12
  4Q LOSS WILD-TYPE      6     12      5
D46V1, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              12                 6
  CLUS_2               9                12
  CLUS_3              12                 5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q LOSS MUTATED       10      7      3      5      8
  4Q LOSS WILD-TYPE      1      2      7      8      5
D46V2, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              10                 1
  CLUS_2               7                 2
  CLUS_3               3                 7
  CLUS_4               5                 8
  CLUS_5               8                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED        7      7     10      4
  4Q LOSS WILD-TYPE      2      5      5      7
D46V3, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               7                 2
  CLUS_2               7                 5
  CLUS_3              10                 5
  CLUS_4               4                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4Q LOSS MUTATED        7      5      6      4      4      1      1
  4Q LOSS WILD-TYPE      1      3      1      3      3      4      4
D46V4, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               7                 1
  CLUS_2               5                 3
  CLUS_3               6                 1
  CLUS_4               4                 3
  CLUS_5               4                 3
  CLUS_6               1                 4
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED       13      7      8      5
  4Q LOSS WILD-TYPE      1     13      4      5
D46V5, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              13                 1
  CLUS_2               7                13
  CLUS_3               8                 4
  CLUS_4               5                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4Q LOSS MUTATED        9      4      3      5      3      3      6
  4Q LOSS WILD-TYPE      1      0      5      1      5      3      8
D46V6, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               9                 1
  CLUS_2               4                 0
  CLUS_3               3                 5
  CLUS_4               5                 1
  CLUS_5               3                 5
  CLUS_6               3                 3
  CLUS_7               6                 8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED       10     16      0      7
  4Q LOSS WILD-TYPE      0      6      4     12
D46V7, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              10                 0
  CLUS_2              16                 6
  CLUS_3               0                 4
  CLUS_4               7                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED       13      7     11      2
  4Q LOSS WILD-TYPE     10      1      7      4
D46V8, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              13                10
  CLUS_2               7                 1
  CLUS_3              11                 7
  CLUS_4               2                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        9     17      7
  4Q LOSS WILD-TYPE      3      6     13
D46V9, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               9                 3
  CLUS_2              17                 6
  CLUS_3               7                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED       13      6     12      2
  4Q LOSS WILD-TYPE     11      1      5      5
D46V10, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              13                11
  CLUS_2               6                 1
  CLUS_3              12                 5
  CLUS_4               2                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = 5P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        3      4      2
  5P LOSS WILD-TYPE     15     17     15
D47V1, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                15
  CLUS_2               4                17
  CLUS_3               2                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P LOSS MUTATED        1      2      0      3      3
  5P LOSS WILD-TYPE     10      7     10     10     10
D47V2, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                10
  CLUS_2               2                 7
  CLUS_3               0                10
  CLUS_4               3                10
  CLUS_5               3                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        0      0      6      2
  5P LOSS WILD-TYPE      9     12      9      9
D47V3, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               0                 9
  CLUS_2               0                12
  CLUS_3               6                 9
  CLUS_4               2                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P LOSS MUTATED        0      3      0      2      3      0      0
  5P LOSS WILD-TYPE      8      5      7      5      4      5      5
D47V4, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               3                 5
  CLUS_3               0                 7
  CLUS_4               2                 5
  CLUS_5               3                 4
  CLUS_6               0                 5
  CLUS_7               0                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        2      4      1      2
  5P LOSS WILD-TYPE     12     16     11      8
D47V5, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               2                12
  CLUS_2               4                16
  CLUS_3               1                11
  CLUS_4               2                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P LOSS MUTATED        0      2      1      0      3      1      2
  5P LOSS WILD-TYPE     10      2      7      6      5      5     12
D47V6, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               0                10
  CLUS_2               2                 2
  CLUS_3               1                 7
  CLUS_4               0                 6
  CLUS_5               3                 5
  CLUS_6               1                 5
  CLUS_7               2                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        2      4      0      3
  5P LOSS WILD-TYPE      8     18      4     16
D47V7, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               4                18
  CLUS_3               0                 4
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        3      0      4      2
  5P LOSS WILD-TYPE     20      8     14      4
D47V8, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                20
  CLUS_2               0                 8
  CLUS_3               4                14
  CLUS_4               2                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        2      4      3
  5P LOSS WILD-TYPE     10     19     17
D47V9, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               2                10
  CLUS_2               4                19
  CLUS_3               3                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        3      0      4      2
  5P LOSS WILD-TYPE     21      7     13      5
D47V10, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               0                 7
  CLUS_3               4                13
  CLUS_4               2                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = 5Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        7      6      5
  5Q LOSS WILD-TYPE     11     15     12
D48V1, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               7                11
  CLUS_2               6                15
  CLUS_3               5                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q LOSS MUTATED        5      3      1      6      3
  5Q LOSS WILD-TYPE      6      6      9      7     10
D48V2, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               5                 6
  CLUS_2               3                 6
  CLUS_3               1                 9
  CLUS_4               6                 7
  CLUS_5               3                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        2      3      9      2
  5Q LOSS WILD-TYPE      7      9      6      9
D48V3, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               2                 7
  CLUS_2               3                 9
  CLUS_3               9                 6
  CLUS_4               2                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q LOSS MUTATED        4      5      0      3      3      0      1
  5Q LOSS WILD-TYPE      4      3      7      4      4      5      4
D48V4, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4                 4
  CLUS_2               5                 3
  CLUS_3               0                 7
  CLUS_4               3                 4
  CLUS_5               3                 4
  CLUS_6               0                 5
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        7      5      2      4
  5Q LOSS WILD-TYPE      7     15     10      6
D48V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               7                 7
  CLUS_2               5                15
  CLUS_3               2                10
  CLUS_4               4                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q LOSS MUTATED        4      2      2      0      5      2      3
  5Q LOSS WILD-TYPE      6      2      6      6      3      4     11
D48V6, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4                 6
  CLUS_2               2                 2
  CLUS_3               2                 6
  CLUS_4               0                 6
  CLUS_5               5                 3
  CLUS_6               2                 4
  CLUS_7               3                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        5      7      2      4
  5Q LOSS WILD-TYPE      5     15      2     15
D48V7, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               5                 5
  CLUS_2               7                15
  CLUS_3               2                 2
  CLUS_4               4                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        8      3      5      2
  5Q LOSS WILD-TYPE     15      5     13      4
D48V8, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               8                15
  CLUS_2               3                 5
  CLUS_3               5                13
  CLUS_4               2                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        6      7      5
  5Q LOSS WILD-TYPE      6     16     15
D48V9, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               6                 6
  CLUS_2               7                16
  CLUS_3               5                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        8      3      5      2
  5Q LOSS WILD-TYPE     16      4     12      5
D48V10, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               8                16
  CLUS_2               3                 4
  CLUS_3               5                12
  CLUS_4               2                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = 6P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        1      1      3
  6P LOSS WILD-TYPE     17     20     14
D49V1, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                17
  CLUS_2               1                20
  CLUS_3               3                14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P LOSS MUTATED        1      0      1      2      1
  6P LOSS WILD-TYPE     10      9      9     11     12
D49V2, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                10
  CLUS_2               0                 9
  CLUS_3               1                 9
  CLUS_4               2                11
  CLUS_5               1                12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED        0      2      1      0
  6P LOSS WILD-TYPE      9     10     14     11
D49V3, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               0                 9
  CLUS_2               2                10
  CLUS_3               1                14
  CLUS_4               0                11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6P LOSS MUTATED        1      1      0      0      0      0      1
  6P LOSS WILD-TYPE      7      7      7      7      7      5      4
D49V4, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                 7
  CLUS_3               0                 7
  CLUS_4               0                 7
  CLUS_5               0                 7
  CLUS_6               0                 5
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED        1      1      2      1
  6P LOSS WILD-TYPE     13     19     10      9
D49V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                13
  CLUS_2               1                19
  CLUS_3               2                10
  CLUS_4               1                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6P LOSS MUTATED        1      0      1      0      0      1      2
  6P LOSS WILD-TYPE      9      4      7      6      8      5     12
D49V6, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               0                 4
  CLUS_3               1                 7
  CLUS_4               0                 6
  CLUS_5               0                 8
  CLUS_6               1                 5
  CLUS_7               2                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED        1      2      1      1
  6P LOSS WILD-TYPE      9     20      3     18
D49V7, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               2                20
  CLUS_3               1                 3
  CLUS_4               1                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED        3      0      2      0
  6P LOSS WILD-TYPE     20      8     16      6
D49V8, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               3                20
  CLUS_2               0                 8
  CLUS_3               2                16
  CLUS_4               0                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        1      2      2
  6P LOSS WILD-TYPE     11     21     18
D49V9, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                11
  CLUS_2               2                21
  CLUS_3               2                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED        3      0      2      0
  6P LOSS WILD-TYPE     21      7     15      7
D49V10, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               0                 7
  CLUS_3               2                15
  CLUS_4               0                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = 6Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        1      1      5
  6Q LOSS WILD-TYPE     17     20     12
D50V1, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                17
  CLUS_2               1                20
  CLUS_3               5                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q LOSS MUTATED        1      0      1      3      2
  6Q LOSS WILD-TYPE     10      9      9     10     11
D50V2, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                10
  CLUS_2               0                 9
  CLUS_3               1                 9
  CLUS_4               3                10
  CLUS_5               2                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        0      3      1      1
  6Q LOSS WILD-TYPE      9      9     14     10
D50V3, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               0                 9
  CLUS_2               3                 9
  CLUS_3               1                14
  CLUS_4               1                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6Q LOSS MUTATED        1      3      0      0      0      0      1
  6Q LOSS WILD-TYPE      7      5      7      7      7      5      4
D50V4, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               3                 5
  CLUS_3               0                 7
  CLUS_4               0                 7
  CLUS_5               0                 7
  CLUS_6               0                 5
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        1      2      3      1
  6Q LOSS WILD-TYPE     13     18      9      9
D50V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                13
  CLUS_2               2                18
  CLUS_3               3                 9
  CLUS_4               1                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6Q LOSS MUTATED        1      0      1      1      0      1      3
  6Q LOSS WILD-TYPE      9      4      7      5      8      5     11
D50V6, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               0                 4
  CLUS_3               1                 7
  CLUS_4               1                 5
  CLUS_5               0                 8
  CLUS_6               1                 5
  CLUS_7               3                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        1      2      1      3
  6Q LOSS WILD-TYPE      9     20      3     16
D50V7, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               2                20
  CLUS_3               1                 3
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        4      0      3      0
  6Q LOSS WILD-TYPE     19      8     15      6
D50V8, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               4                19
  CLUS_2               0                 8
  CLUS_3               3                15
  CLUS_4               0                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        2      2      3
  6Q LOSS WILD-TYPE     10     21     17
D50V9, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               2                10
  CLUS_2               2                21
  CLUS_3               3                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        5      0      2      0
  6Q LOSS WILD-TYPE     19      7     15      7
D50V10, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               5                19
  CLUS_2               0                 7
  CLUS_3               2                15
  CLUS_4               0                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = 7P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        4      5      4
  7P LOSS WILD-TYPE     14     16     13
D51V1, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               4                14
  CLUS_2               5                16
  CLUS_3               4                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P LOSS MUTATED        3      1      1      4      4
  7P LOSS WILD-TYPE      8      8      9      9      9
D51V2, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               3                 8
  CLUS_2               1                 8
  CLUS_3               1                 9
  CLUS_4               4                 9
  CLUS_5               4                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        2      2      2      4
  7P LOSS WILD-TYPE      7     10     13      7
D51V3, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               2                 7
  CLUS_2               2                10
  CLUS_3               2                13
  CLUS_4               4                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7P LOSS MUTATED        2      1      3      0      3      1      0
  7P LOSS WILD-TYPE      6      7      4      7      4      4      5
D51V4, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               2                 6
  CLUS_2               1                 7
  CLUS_3               3                 4
  CLUS_4               0                 7
  CLUS_5               3                 4
  CLUS_6               1                 4
  CLUS_7               0                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        3      6      3      1
  7P LOSS WILD-TYPE     11     14      9      9
D51V5, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               3                11
  CLUS_2               6                14
  CLUS_3               3                 9
  CLUS_4               1                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7P LOSS MUTATED        3      0      2      1      0      2      5
  7P LOSS WILD-TYPE      7      4      6      5      8      4      9
D51V6, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               0                 4
  CLUS_3               2                 6
  CLUS_4               1                 5
  CLUS_5               0                 8
  CLUS_6               2                 4
  CLUS_7               5                 9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        1      5      0      7
  7P LOSS WILD-TYPE      9     17      4     12
D51V7, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               5                17
  CLUS_3               0                 4
  CLUS_4               7                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        5      2      3      3
  7P LOSS WILD-TYPE     18      6     15      3
D51V8, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               5                18
  CLUS_2               2                 6
  CLUS_3               3                15
  CLUS_4               3                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        2      5      6
  7P LOSS WILD-TYPE     10     18     14
D51V9, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               2                10
  CLUS_2               5                18
  CLUS_3               6                14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        5      2      3      3
  7P LOSS WILD-TYPE     19      5     14      4
D51V10, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               5                19
  CLUS_2               2                 5
  CLUS_3               3                14
  CLUS_4               3                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = 7Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        2      4      7
  7Q LOSS WILD-TYPE     16     17     10
D52V1, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               2                16
  CLUS_2               4                17
  CLUS_3               7                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q LOSS MUTATED        3      2      1      3      4
  7Q LOSS WILD-TYPE      8      7      9     10      9
D52V2, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               3                 8
  CLUS_2               2                 7
  CLUS_3               1                 9
  CLUS_4               3                10
  CLUS_5               4                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        2      3      1      4
  7Q LOSS WILD-TYPE      7      9     14      7
D52V3, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               2                 7
  CLUS_2               3                 9
  CLUS_3               1                14
  CLUS_4               4                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7Q LOSS MUTATED        3      1      1      0      3      1      1
  7Q LOSS WILD-TYPE      5      7      6      7      4      4      4
D52V4, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               1                 7
  CLUS_3               1                 6
  CLUS_4               0                 7
  CLUS_5               3                 4
  CLUS_6               1                 4
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        4      5      2      2
  7Q LOSS WILD-TYPE     10     15     10      8
D52V5, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               4                10
  CLUS_2               5                15
  CLUS_3               2                10
  CLUS_4               2                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7Q LOSS MUTATED        4      0      2      1      1      1      4
  7Q LOSS WILD-TYPE      6      4      6      5      7      5     10
D52V6, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               4                 6
  CLUS_2               0                 4
  CLUS_3               2                 6
  CLUS_4               1                 5
  CLUS_5               1                 7
  CLUS_6               1                 5
  CLUS_7               4                10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        2      5      0      6
  7Q LOSS WILD-TYPE      8     17      4     13
D52V7, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               5                17
  CLUS_3               0                 4
  CLUS_4               6                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        4      3      3      3
  7Q LOSS WILD-TYPE     19      5     15      3
D52V8, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               4                19
  CLUS_2               3                 5
  CLUS_3               3                15
  CLUS_4               3                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        3      5      5
  7Q LOSS WILD-TYPE      9     18     15
D52V9, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               3                 9
  CLUS_2               5                18
  CLUS_3               5                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        4      2      4      3
  7Q LOSS WILD-TYPE     20      5     13      4
D52V10, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               4                20
  CLUS_2               2                 5
  CLUS_3               4                13
  CLUS_4               3                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = 8P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        8      6      9
  8P LOSS WILD-TYPE     10     15      8
D53V1, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               8                10
  CLUS_2               6                15
  CLUS_3               9                 8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P LOSS MUTATED        5      3      4      5      6
  8P LOSS WILD-TYPE      6      6      6      8      7
D53V2, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               5                 6
  CLUS_2               3                 6
  CLUS_3               4                 6
  CLUS_4               5                 8
  CLUS_5               6                 7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        5      5      4      5
  8P LOSS WILD-TYPE      4      7     11      6
D53V3, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               5                 4
  CLUS_2               5                 7
  CLUS_3               4                11
  CLUS_4               5                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P LOSS MUTATED        5      3      4      2      4      0      1
  8P LOSS WILD-TYPE      3      5      3      5      3      5      4
D53V4, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               5                 3
  CLUS_2               3                 5
  CLUS_3               4                 3
  CLUS_4               2                 5
  CLUS_5               4                 3
  CLUS_6               0                 5
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        6      8      6      3
  8P LOSS WILD-TYPE      8     12      6      7
D53V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               6                 8
  CLUS_2               8                12
  CLUS_3               6                 6
  CLUS_4               3                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P LOSS MUTATED        5      1      4      4      2      2      5
  8P LOSS WILD-TYPE      5      3      4      2      6      4      9
D53V6, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               5                 5
  CLUS_2               1                 3
  CLUS_3               4                 4
  CLUS_4               4                 2
  CLUS_5               2                 6
  CLUS_6               2                 4
  CLUS_7               5                 9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        4      8      1     10
  8P LOSS WILD-TYPE      6     14      3      9
D53V7, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               4                 6
  CLUS_2               8                14
  CLUS_3               1                 3
  CLUS_4              10                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        8      4      7      4
  8P LOSS WILD-TYPE     15      4     11      2
D53V8, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               8                15
  CLUS_2               4                 4
  CLUS_3               7                11
  CLUS_4               4                 2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        4      9     10
  8P LOSS WILD-TYPE      8     14     10
D53V9, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               4                 8
  CLUS_2               9                14
  CLUS_3              10                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        9      4      6      4
  8P LOSS WILD-TYPE     15      3     11      3
D53V10, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               9                15
  CLUS_2               4                 3
  CLUS_3               6                11
  CLUS_4               4                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = 8Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        3      3      3
  8Q LOSS WILD-TYPE     15     18     14
D54V1, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               3                15
  CLUS_2               3                18
  CLUS_3               3                14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q LOSS MUTATED        1      2      2      1      3
  8Q LOSS WILD-TYPE     10      7      8     12     10
D54V2, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                10
  CLUS_2               2                 7
  CLUS_3               2                 8
  CLUS_4               1                12
  CLUS_5               3                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        2      1      2      2
  8Q LOSS WILD-TYPE      7     11     13      9
D54V3, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               2                 7
  CLUS_2               1                11
  CLUS_3               2                13
  CLUS_4               2                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q LOSS MUTATED        1      1      2      0      2      0      1
  8Q LOSS WILD-TYPE      7      7      5      7      5      5      4
D54V4, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                 7
  CLUS_3               2                 5
  CLUS_4               0                 7
  CLUS_5               2                 5
  CLUS_6               0                 5
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        1      2      4      2
  8Q LOSS WILD-TYPE     13     18      8      8
D54V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                13
  CLUS_2               2                18
  CLUS_3               4                 8
  CLUS_4               2                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q LOSS MUTATED        1      1      2      1      1      2      1
  8Q LOSS WILD-TYPE      9      3      6      5      7      4     13
D54V6, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               1                 3
  CLUS_3               2                 6
  CLUS_4               1                 5
  CLUS_5               1                 7
  CLUS_6               2                 4
  CLUS_7               1                13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        1      4      1      3
  8Q LOSS WILD-TYPE      9     18      3     16
D54V7, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               4                18
  CLUS_3               1                 3
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        4      1      4      0
  8Q LOSS WILD-TYPE     19      7     14      6
D54V8, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               4                19
  CLUS_2               1                 7
  CLUS_3               4                14
  CLUS_4               0                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        0      5      4
  8Q LOSS WILD-TYPE     12     18     16
D54V9, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                12
  CLUS_2               5                18
  CLUS_3               4                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        4      1      4      0
  8Q LOSS WILD-TYPE     20      6     13      7
D54V10, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               4                20
  CLUS_2               1                 6
  CLUS_3               4                13
  CLUS_4               0                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = 9P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       13     10     11
  9P LOSS WILD-TYPE      5     11      6
D55V1, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              13                 5
  CLUS_2              10                11
  CLUS_3              11                 6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P LOSS MUTATED       11      3      4      9      7
  9P LOSS WILD-TYPE      0      6      6      4      6
D55V2, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              11                 0
  CLUS_2               3                 6
  CLUS_3               4                 6
  CLUS_4               9                 4
  CLUS_5               7                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED        9      6      8      6
  9P LOSS WILD-TYPE      0      6      7      5
D55V3, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               9                 0
  CLUS_2               6                 6
  CLUS_3               8                 7
  CLUS_4               6                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P LOSS MUTATED        8      6      7      1      4      2      1
  9P LOSS WILD-TYPE      0      2      0      6      3      3      4
D55V4, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               8                 0
  CLUS_2               6                 2
  CLUS_3               7                 0
  CLUS_4               1                 6
  CLUS_5               4                 3
  CLUS_6               2                 3
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       10     11      8      5
  9P LOSS WILD-TYPE      4      9      4      5
D55V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              10                 4
  CLUS_2              11                 9
  CLUS_3               8                 4
  CLUS_4               5                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P LOSS MUTATED        9      1      4      5      3      3      9
  9P LOSS WILD-TYPE      1      3      4      1      5      3      5
D55V6, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               9                 1
  CLUS_2               1                 3
  CLUS_3               4                 4
  CLUS_4               5                 1
  CLUS_5               3                 5
  CLUS_6               3                 3
  CLUS_7               9                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED        6     13      2     13
  9P LOSS WILD-TYPE      4      9      2      6
D55V7, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               6                 4
  CLUS_2              13                 9
  CLUS_3               2                 2
  CLUS_4              13                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       15      7      9      3
  9P LOSS WILD-TYPE      8      1      9      3
D55V8, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              15                 8
  CLUS_2               7                 1
  CLUS_3               9                 9
  CLUS_4               3                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        8     14     12
  9P LOSS WILD-TYPE      4      9      8
D55V9, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               8                 4
  CLUS_2              14                 9
  CLUS_3              12                 8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       16      7      8      3
  9P LOSS WILD-TYPE      8      0      9      4
D55V10, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              16                 8
  CLUS_2               7                 0
  CLUS_3               8                 9
  CLUS_4               3                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = 9Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       15     12     12
  9Q LOSS WILD-TYPE      3      9      5
D56V1, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              15                 3
  CLUS_2              12                 9
  CLUS_3              12                 5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q LOSS MUTATED       11      3      5     12      8
  9Q LOSS WILD-TYPE      0      6      5      1      5
D56V2, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              11                 0
  CLUS_2               3                 6
  CLUS_3               5                 5
  CLUS_4              12                 1
  CLUS_5               8                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED        9      8      9      7
  9Q LOSS WILD-TYPE      0      4      6      4
D56V3, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               9                 0
  CLUS_2               8                 4
  CLUS_3               9                 6
  CLUS_4               7                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9Q LOSS MUTATED        8      6      7      2      4      3      3
  9Q LOSS WILD-TYPE      0      2      0      5      3      2      2
D56V4, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               8                 0
  CLUS_2               6                 2
  CLUS_3               7                 0
  CLUS_4               2                 5
  CLUS_5               4                 3
  CLUS_6               3                 2
  CLUS_7               3                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED       11     15      8      5
  9Q LOSS WILD-TYPE      3      5      4      5
D56V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              11                 3
  CLUS_2              15                 5
  CLUS_3               8                 4
  CLUS_4               5                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9Q LOSS MUTATED       10      1      5      5      4      3     11
  9Q LOSS WILD-TYPE      0      3      3      1      4      3      3
D56V6, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              10                 0
  CLUS_2               1                 3
  CLUS_3               5                 3
  CLUS_4               5                 1
  CLUS_5               4                 4
  CLUS_6               3                 3
  CLUS_7              11                 3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED        7     15      2     15
  9Q LOSS WILD-TYPE      3      7      2      4
D56V7, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               7                 3
  CLUS_2              15                 7
  CLUS_3               2                 2
  CLUS_4              15                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED       17      8     10      4
  9Q LOSS WILD-TYPE      6      0      8      2
D56V8, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              17                 6
  CLUS_2               8                 0
  CLUS_3              10                 8
  CLUS_4               4                 2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        9     16     14
  9Q LOSS WILD-TYPE      3      7      6
D56V9, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               9                 3
  CLUS_2              16                 7
  CLUS_3              14                 6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED       18      7     10      4
  9Q LOSS WILD-TYPE      6      0      7      3
D56V10, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              18                 6
  CLUS_2               7                 0
  CLUS_3              10                 7
  CLUS_4               4                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = 10P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        9      8      6
  10P LOSS WILD-TYPE      9     13     11
D57V1, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                9                  9
  CLUS_2                8                 13
  CLUS_3                6                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P LOSS MUTATED        4      7      2      8      2
  10P LOSS WILD-TYPE      7      2      8      5     11
D57V2, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                4                  7
  CLUS_2                7                  2
  CLUS_3                2                  8
  CLUS_4                8                  5
  CLUS_5                2                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED        3      3      7      5
  10P LOSS WILD-TYPE      6      9      8      6
D57V3, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                3                  6
  CLUS_2                3                  9
  CLUS_3                7                  8
  CLUS_4                5                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P LOSS MUTATED        2      3      4      3      4      1      1
  10P LOSS WILD-TYPE      6      5      3      4      3      4      4
D57V4, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                3                  5
  CLUS_3                4                  3
  CLUS_4                3                  4
  CLUS_5                4                  3
  CLUS_6                1                  4
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED        5     11      1      6
  10P LOSS WILD-TYPE      9      9     11      4
D57V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                5                  9
  CLUS_2               11                  9
  CLUS_3                1                 11
  CLUS_4                6                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P LOSS MUTATED        3      3      3      2      5      0      7
  10P LOSS WILD-TYPE      7      1      5      4      3      6      7
D57V6, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                3                  1
  CLUS_3                3                  5
  CLUS_4                2                  4
  CLUS_5                5                  3
  CLUS_6                0                  6
  CLUS_7                7                  7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED        3     10      0     10
  10P LOSS WILD-TYPE      7     12      4      9
D57V7, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                3                  7
  CLUS_2               10                 12
  CLUS_3                0                  4
  CLUS_4               10                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED       10      2      8      3
  10P LOSS WILD-TYPE     13      6     10      3
D57V8, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               10                 13
  CLUS_2                2                  6
  CLUS_3                8                 10
  CLUS_4                3                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        4     10      9
  10P LOSS WILD-TYPE      8     13     11
D57V9, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                4                  8
  CLUS_2               10                 13
  CLUS_3                9                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED       10      2      8      3
  10P LOSS WILD-TYPE     14      5      9      4
D57V10, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               10                 14
  CLUS_2                2                  5
  CLUS_3                8                  9
  CLUS_4                3                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = 10Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        7      7      7
  10Q LOSS WILD-TYPE     11     14     10
D58V1, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                7                 11
  CLUS_2                7                 14
  CLUS_3                7                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q LOSS MUTATED        5      4      3      7      2
  10Q LOSS WILD-TYPE      6      5      7      6     11
D58V2, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                5                  6
  CLUS_2                4                  5
  CLUS_3                3                  7
  CLUS_4                7                  6
  CLUS_5                2                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED        4      2      5      6
  10Q LOSS WILD-TYPE      5     10     10      5
D58V3, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                4                  5
  CLUS_2                2                 10
  CLUS_3                5                 10
  CLUS_4                6                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10Q LOSS MUTATED        3      3      3      1      4      2      1
  10Q LOSS WILD-TYPE      5      5      4      6      3      3      4
D58V4, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                3                  5
  CLUS_2                3                  5
  CLUS_3                3                  4
  CLUS_4                1                  6
  CLUS_5                4                  3
  CLUS_6                2                  3
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED        5     11      2      3
  10Q LOSS WILD-TYPE      9      9     10      7
D58V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                5                  9
  CLUS_2               11                  9
  CLUS_3                2                 10
  CLUS_4                3                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10Q LOSS MUTATED        3      3      3      2      2      0      8
  10Q LOSS WILD-TYPE      7      1      5      4      6      6      6
D58V6, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                3                  1
  CLUS_3                3                  5
  CLUS_4                2                  4
  CLUS_5                2                  6
  CLUS_6                0                  6
  CLUS_7                8                  6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED        5      6      0     10
  10Q LOSS WILD-TYPE      5     16      4      9
D58V7, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                5                  5
  CLUS_2                6                 16
  CLUS_3                0                  4
  CLUS_4               10                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED       11      2      5      3
  10Q LOSS WILD-TYPE     12      6     13      3
D58V8, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               11                 12
  CLUS_2                2                  6
  CLUS_3                5                 13
  CLUS_4                3                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        4      7     10
  10Q LOSS WILD-TYPE      8     16     10
D58V9, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                4                  8
  CLUS_2                7                 16
  CLUS_3               10                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED       11      2      5      3
  10Q LOSS WILD-TYPE     13      5     12      4
D58V10, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               11                 13
  CLUS_2                2                  5
  CLUS_3                5                 12
  CLUS_4                3                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = 11P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        8     10      8
  11P LOSS WILD-TYPE     10     11      9
D59V1, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                8                 10
  CLUS_2               10                 11
  CLUS_3                8                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P LOSS MUTATED        3      7      4      2     10
  11P LOSS WILD-TYPE      8      2      6     11      3
D59V2, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                3                  8
  CLUS_2                7                  2
  CLUS_3                4                  6
  CLUS_4                2                 11
  CLUS_5               10                  3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED        4      5      8      4
  11P LOSS WILD-TYPE      5      7      7      7
D59V3, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                4                  5
  CLUS_2                5                  7
  CLUS_3                8                  7
  CLUS_4                4                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P LOSS MUTATED        3      3      4      4      4      1      2
  11P LOSS WILD-TYPE      5      5      3      3      3      4      3
D59V4, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                3                  5
  CLUS_2                3                  5
  CLUS_3                4                  3
  CLUS_4                4                  3
  CLUS_5                4                  3
  CLUS_6                1                  4
  CLUS_7                2                  3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED        6      7      8      5
  11P LOSS WILD-TYPE      8     13      4      5
D59V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                6                  8
  CLUS_2                7                 13
  CLUS_3                8                  4
  CLUS_4                5                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P LOSS MUTATED        4      3      4      4      3      4      4
  11P LOSS WILD-TYPE      6      1      4      2      5      2     10
D59V6, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                4                  6
  CLUS_2                3                  1
  CLUS_3                4                  4
  CLUS_4                4                  2
  CLUS_5                3                  5
  CLUS_6                4                  2
  CLUS_7                4                 10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED        4     14      1      7
  11P LOSS WILD-TYPE      6      8      3     12
D59V7, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                4                  6
  CLUS_2               14                  8
  CLUS_3                1                  3
  CLUS_4                7                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED       10      3     11      2
  11P LOSS WILD-TYPE     13      5      7      4
D59V8, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               10                 13
  CLUS_2                3                  5
  CLUS_3               11                  7
  CLUS_4                2                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        5     13      8
  11P LOSS WILD-TYPE      7     10     12
D59V9, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                5                  7
  CLUS_2               13                 10
  CLUS_3                8                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED       10      2     11      3
  11P LOSS WILD-TYPE     14      5      6      4
D59V10, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               10                 14
  CLUS_2                2                  5
  CLUS_3               11                  6
  CLUS_4                3                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = 11Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        7      8      9
  11Q LOSS WILD-TYPE     11     13      8
D60V1, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                7                 11
  CLUS_2                8                 13
  CLUS_3                9                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q LOSS MUTATED        3      8      4      2      7
  11Q LOSS WILD-TYPE      8      1      6     11      6
D60V2, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                3                  8
  CLUS_2                8                  1
  CLUS_3                4                  6
  CLUS_4                2                 11
  CLUS_5                7                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        3      4      8      4
  11Q LOSS WILD-TYPE      6      8      7      7
D60V3, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                3                  6
  CLUS_2                4                  8
  CLUS_3                8                  7
  CLUS_4                4                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q LOSS MUTATED        3      2      3      4      4      1      2
  11Q LOSS WILD-TYPE      5      6      4      3      3      4      3
D60V4, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                3                  5
  CLUS_2                2                  6
  CLUS_3                3                  4
  CLUS_4                4                  3
  CLUS_5                4                  3
  CLUS_6                1                  4
  CLUS_7                2                  3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        6      7      6      5
  11Q LOSS WILD-TYPE      8     13      6      5
D60V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                6                  8
  CLUS_2                7                 13
  CLUS_3                6                  6
  CLUS_4                5                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q LOSS MUTATED        4      3      3      3      3      3      5
  11Q LOSS WILD-TYPE      6      1      5      3      5      3      9
D60V6, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                4                  6
  CLUS_2                3                  1
  CLUS_3                3                  5
  CLUS_4                3                  3
  CLUS_5                3                  5
  CLUS_6                3                  3
  CLUS_7                5                  9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        4     13      1      6
  11Q LOSS WILD-TYPE      6      9      3     13
D60V7, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                4                  6
  CLUS_2               13                  9
  CLUS_3                1                  3
  CLUS_4                6                 13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        8      3     10      3
  11Q LOSS WILD-TYPE     15      5      8      3
D60V8, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                8                 15
  CLUS_2                3                  5
  CLUS_3               10                  8
  CLUS_4                3                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        5     13      6
  11Q LOSS WILD-TYPE      7     10     14
D60V9, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                5                  7
  CLUS_2               13                 10
  CLUS_3                6                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        8      2     11      3
  11Q LOSS WILD-TYPE     16      5      6      4
D60V10, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                8                 16
  CLUS_2                2                  5
  CLUS_3               11                  6
  CLUS_4                3                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = 12P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        4      3      6
  12P LOSS WILD-TYPE     14     18     11
D61V1, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                4                 14
  CLUS_2                3                 18
  CLUS_3                6                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P LOSS MUTATED        4      0      3      4      2
  12P LOSS WILD-TYPE      7      9      7      9     11
D61V2, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                4                  7
  CLUS_2                0                  9
  CLUS_3                3                  7
  CLUS_4                4                  9
  CLUS_5                2                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        3      4      2      2
  12P LOSS WILD-TYPE      6      8     13      9
D61V3, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                3                  6
  CLUS_2                4                  8
  CLUS_3                2                 13
  CLUS_4                2                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12P LOSS MUTATED        3      3      1      2      1      0      1
  12P LOSS WILD-TYPE      5      5      6      5      6      5      4
D61V4, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                3                  5
  CLUS_2                3                  5
  CLUS_3                1                  6
  CLUS_4                2                  5
  CLUS_5                1                  6
  CLUS_6                0                  5
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        5      3      3      2
  12P LOSS WILD-TYPE      9     17      9      8
D61V5, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                5                  9
  CLUS_2                3                 17
  CLUS_3                3                  9
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12P LOSS MUTATED        4      0      3      1      1      1      3
  12P LOSS WILD-TYPE      6      4      5      5      7      5     11
D61V6, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                4                  6
  CLUS_2                0                  4
  CLUS_3                3                  5
  CLUS_4                1                  5
  CLUS_5                1                  7
  CLUS_6                1                  5
  CLUS_7                3                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        4      5      1      3
  12P LOSS WILD-TYPE      6     17      3     16
D61V7, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                4                  6
  CLUS_2                5                 17
  CLUS_3                1                  3
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        4      3      4      2
  12P LOSS WILD-TYPE     19      5     14      4
D61V8, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                4                 19
  CLUS_2                3                  5
  CLUS_3                4                 14
  CLUS_4                2                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        3      5      5
  12P LOSS WILD-TYPE      9     18     15
D61V9, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                3                  9
  CLUS_2                5                 18
  CLUS_3                5                 15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        5      3      2      3
  12P LOSS WILD-TYPE     19      4     15      4
D61V10, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                3                  4
  CLUS_3                2                 15
  CLUS_4                3                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = 12Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        3      5      6
  12Q LOSS WILD-TYPE     15     16     11
D62V1, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                5                 16
  CLUS_3                6                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q LOSS MUTATED        3      1      3      4      3
  12Q LOSS WILD-TYPE      8      8      7      9     10
D62V2, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                3                  8
  CLUS_2                1                  8
  CLUS_3                3                  7
  CLUS_4                4                  9
  CLUS_5                3                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        2      4      3      2
  12Q LOSS WILD-TYPE      7      8     12      9
D62V3, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                2                  7
  CLUS_2                4                  8
  CLUS_3                3                 12
  CLUS_4                2                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12Q LOSS MUTATED        1      5      2      2      1      0      0
  12Q LOSS WILD-TYPE      7      3      5      5      6      5      5
D62V4, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                5                  3
  CLUS_3                2                  5
  CLUS_4                2                  5
  CLUS_5                1                  6
  CLUS_6                0                  5
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        4      4      4      2
  12Q LOSS WILD-TYPE     10     16      8      8
D62V5, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                4                 10
  CLUS_2                4                 16
  CLUS_3                4                  8
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12Q LOSS MUTATED        2      1      3      2      1      2      3
  12Q LOSS WILD-TYPE      8      3      5      4      7      4     11
D62V6, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                1                  3
  CLUS_3                3                  5
  CLUS_4                2                  4
  CLUS_5                1                  7
  CLUS_6                2                  4
  CLUS_7                3                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        3      5      1      5
  12Q LOSS WILD-TYPE      7     17      3     14
D62V7, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                5                 17
  CLUS_3                1                  3
  CLUS_4                5                 14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        5      2      5      2
  12Q LOSS WILD-TYPE     18      6     13      4
D62V8, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                5                 18
  CLUS_2                2                  6
  CLUS_3                5                 13
  CLUS_4                2                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        3      5      6
  12Q LOSS WILD-TYPE      9     18     14
D62V9, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                3                  9
  CLUS_2                5                 18
  CLUS_3                6                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        6      2      3      3
  12Q LOSS WILD-TYPE     18      5     14      4
D62V10, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                6                 18
  CLUS_2                2                  5
  CLUS_3                3                 14
  CLUS_4                3                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = 13Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        6     11      9
  13Q LOSS WILD-TYPE     12     10      8
D63V1, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                6                 12
  CLUS_2               11                 10
  CLUS_3                9                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q LOSS MUTATED        1      7      5     10      3
  13Q LOSS WILD-TYPE     10      2      5      3     10
D63V2, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                7                  2
  CLUS_3                5                  5
  CLUS_4               10                  3
  CLUS_5                3                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED        3      5      7      6
  13Q LOSS WILD-TYPE      6      7      8      5
D63V3, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                3                  6
  CLUS_2                5                  7
  CLUS_3                7                  8
  CLUS_4                6                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  13Q LOSS MUTATED        1      4      2      6      3      3      2
  13Q LOSS WILD-TYPE      7      4      5      1      4      2      3
D63V4, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                4                  4
  CLUS_3                2                  5
  CLUS_4                6                  1
  CLUS_5                3                  4
  CLUS_6                3                  2
  CLUS_7                2                  3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED        4     12      3      7
  13Q LOSS WILD-TYPE     10      8      9      3
D63V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                4                 10
  CLUS_2               12                  8
  CLUS_3                3                  9
  CLUS_4                7                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  13Q LOSS MUTATED        1      3      4      1      6      2      9
  13Q LOSS WILD-TYPE      9      1      4      5      2      4      5
D63V6, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                3                  1
  CLUS_3                4                  4
  CLUS_4                1                  5
  CLUS_5                6                  2
  CLUS_6                2                  4
  CLUS_7                9                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED        4      8      3     11
  13Q LOSS WILD-TYPE      6     14      1      8
D63V7, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                4                  6
  CLUS_2                8                 14
  CLUS_3                3                  1
  CLUS_4               11                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       14      1      8      3
  13Q LOSS WILD-TYPE      9      7     10      3
D63V8, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               14                  9
  CLUS_2                1                  7
  CLUS_3                8                 10
  CLUS_4                3                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        4      8     14
  13Q LOSS WILD-TYPE      8     15      6
D63V9, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                4                  8
  CLUS_2                8                 15
  CLUS_3               14                  6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       14      1      7      4
  13Q LOSS WILD-TYPE     10      6     10      3
D63V10, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               14                 10
  CLUS_2                1                  6
  CLUS_3                7                 10
  CLUS_4                4                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = 14Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        8     10      9
  14Q LOSS WILD-TYPE     10     11      8
D64V1, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                8                 10
  CLUS_2               10                 11
  CLUS_3                9                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q LOSS MUTATED        7      5      5      2      8
  14Q LOSS WILD-TYPE      4      4      5     11      5
D64V2, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                7                  4
  CLUS_2                5                  4
  CLUS_3                5                  5
  CLUS_4                2                 11
  CLUS_5                8                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED        5      8      7      4
  14Q LOSS WILD-TYPE      4      4      8      7
D64V3, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                5                  4
  CLUS_2                8                  4
  CLUS_3                7                  8
  CLUS_4                4                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  14Q LOSS MUTATED        6      4      4      4      5      0      1
  14Q LOSS WILD-TYPE      2      4      3      3      2      5      4
D64V4, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                6                  2
  CLUS_2                4                  4
  CLUS_3                4                  3
  CLUS_4                4                  3
  CLUS_5                5                  2
  CLUS_6                0                  5
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED        9      6      8      4
  14Q LOSS WILD-TYPE      5     14      4      6
D64V5, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                9                  5
  CLUS_2                6                 14
  CLUS_3                8                  4
  CLUS_4                4                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  14Q LOSS MUTATED        7      2      5      4      2      4      3
  14Q LOSS WILD-TYPE      3      2      3      2      6      2     11
D64V6, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                7                  3
  CLUS_2                2                  2
  CLUS_3                5                  3
  CLUS_4                4                  2
  CLUS_5                2                  6
  CLUS_6                4                  2
  CLUS_7                3                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED        6     12      2      7
  14Q LOSS WILD-TYPE      4     10      2     12
D64V7, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                6                  4
  CLUS_2               12                 10
  CLUS_3                2                  2
  CLUS_4                7                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED       11      5      8      3
  14Q LOSS WILD-TYPE     12      3     10      3
D64V8, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               11                 12
  CLUS_2                5                  3
  CLUS_3                8                 10
  CLUS_4                3                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        6     12      9
  14Q LOSS WILD-TYPE      6     11     11
D64V9, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                6                  6
  CLUS_2               12                 11
  CLUS_3                9                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED       11      4      8      4
  14Q LOSS WILD-TYPE     13      3      9      3
D64V10, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               11                 13
  CLUS_2                4                  3
  CLUS_3                8                  9
  CLUS_4                4                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = 15Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        7     10     15
  15Q LOSS WILD-TYPE     11     11      2
D65V1, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                7                 11
  CLUS_2               10                 11
  CLUS_3               15                  2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q LOSS MUTATED        7      5      4      7      9
  15Q LOSS WILD-TYPE      4      4      6      6      4
D65V2, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                7                  4
  CLUS_2                5                  4
  CLUS_3                4                  6
  CLUS_4                7                  6
  CLUS_5                9                  4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED        4      5      7      7
  15Q LOSS WILD-TYPE      5      7      8      4
D65V3, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                4                  5
  CLUS_2                5                  7
  CLUS_3                7                  8
  CLUS_4                7                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  15Q LOSS MUTATED        5      5      1      5      5      2      0
  15Q LOSS WILD-TYPE      3      3      6      2      2      3      5
D65V4, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                5                  3
  CLUS_2                5                  3
  CLUS_3                1                  6
  CLUS_4                5                  2
  CLUS_5                5                  2
  CLUS_6                2                  3
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED        9     11      7      5
  15Q LOSS WILD-TYPE      5      9      5      5
D65V5, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                9                  5
  CLUS_2               11                  9
  CLUS_3                7                  5
  CLUS_4                5                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  15Q LOSS MUTATED        6      3      4      3      4      4      8
  15Q LOSS WILD-TYPE      4      1      4      3      4      2      6
D65V6, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                6                  4
  CLUS_2                3                  1
  CLUS_3                4                  4
  CLUS_4                3                  3
  CLUS_5                4                  4
  CLUS_6                4                  2
  CLUS_7                8                  6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED        6     13      3     10
  15Q LOSS WILD-TYPE      4      9      1      9
D65V7, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                6                  4
  CLUS_2               13                  9
  CLUS_3                3                  1
  CLUS_4               10                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED       13      5     11      3
  15Q LOSS WILD-TYPE     10      3      7      3
D65V8, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               13                 10
  CLUS_2                5                  3
  CLUS_3               11                  7
  CLUS_4                3                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        7     13     12
  15Q LOSS WILD-TYPE      5     10      8
D65V9, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                7                  5
  CLUS_2               13                 10
  CLUS_3               12                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED       14      5      9      4
  15Q LOSS WILD-TYPE     10      2      8      3
D65V10, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               14                 10
  CLUS_2                5                  2
  CLUS_3                9                  8
  CLUS_4                4                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = 16P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        9     15      8
  16P LOSS WILD-TYPE      9      6      9
D66V1, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                9                  9
  CLUS_2               15                  6
  CLUS_3                8                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P LOSS MUTATED        6      7      6      8      5
  16P LOSS WILD-TYPE      5      2      4      5      8
D66V2, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                6                  5
  CLUS_2                7                  2
  CLUS_3                6                  4
  CLUS_4                8                  5
  CLUS_5                5                  8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        5      6      9      6
  16P LOSS WILD-TYPE      4      6      6      5
D66V3, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                5                  4
  CLUS_2                6                  6
  CLUS_3                9                  6
  CLUS_4                6                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P LOSS MUTATED        4      7      4      5      4      2      0
  16P LOSS WILD-TYPE      4      1      3      2      3      3      5
D66V4, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                4                  4
  CLUS_2                7                  1
  CLUS_3                4                  3
  CLUS_4                5                  2
  CLUS_5                4                  3
  CLUS_6                2                  3
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        9     13      4      6
  16P LOSS WILD-TYPE      5      7      8      4
D66V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                9                  5
  CLUS_2               13                  7
  CLUS_3                4                  8
  CLUS_4                6                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P LOSS MUTATED        5      4      7      3      5      1      7
  16P LOSS WILD-TYPE      5      0      1      3      3      5      7
D66V6, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                5                  5
  CLUS_2                4                  0
  CLUS_3                7                  1
  CLUS_4                3                  3
  CLUS_5                5                  3
  CLUS_6                1                  5
  CLUS_7                7                  7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        7     13      2     10
  16P LOSS WILD-TYPE      3      9      2      9
D66V7, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                7                  3
  CLUS_2               13                  9
  CLUS_3                2                  2
  CLUS_4               10                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED       14      4     10      4
  16P LOSS WILD-TYPE      9      4      8      2
D66V8, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               14                  9
  CLUS_2                4                  4
  CLUS_3               10                  8
  CLUS_4                4                  2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        9     12     11
  16P LOSS WILD-TYPE      3     11      9
D66V9, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                9                  3
  CLUS_2               12                 11
  CLUS_3               11                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED       14      4      9      5
  16P LOSS WILD-TYPE     10      3      8      2
D66V10, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               14                 10
  CLUS_2                4                  3
  CLUS_3                9                  8
  CLUS_4                5                  2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = 16Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       11     15     11
  16Q LOSS WILD-TYPE      7      6      6
D67V1, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               11                  7
  CLUS_2               15                  6
  CLUS_3               11                  6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q LOSS MUTATED        8      7      7      8      7
  16Q LOSS WILD-TYPE      3      2      3      5      6
D67V2, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                8                  3
  CLUS_2                7                  2
  CLUS_3                7                  3
  CLUS_4                8                  5
  CLUS_5                7                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED        7      7      9      8
  16Q LOSS WILD-TYPE      2      5      6      3
D67V3, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                7                  2
  CLUS_2                7                  5
  CLUS_3                9                  6
  CLUS_4                8                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q LOSS MUTATED        5      8      5      5      4      3      1
  16Q LOSS WILD-TYPE      3      0      2      2      3      2      4
D67V4, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                5                  3
  CLUS_2                8                  0
  CLUS_3                5                  2
  CLUS_4                5                  2
  CLUS_5                4                  3
  CLUS_6                3                  2
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED       11     14      6      6
  16Q LOSS WILD-TYPE      3      6      6      4
D67V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               11                  3
  CLUS_2               14                  6
  CLUS_3                6                  6
  CLUS_4                6                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q LOSS MUTATED        7      4      7      5      5      1      8
  16Q LOSS WILD-TYPE      3      0      1      1      3      5      6
D67V6, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                7                  3
  CLUS_2                4                  0
  CLUS_3                7                  1
  CLUS_4                5                  1
  CLUS_5                5                  3
  CLUS_6                1                  5
  CLUS_7                8                  6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED        8     15      2     12
  16Q LOSS WILD-TYPE      2      7      2      7
D67V7, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                8                  2
  CLUS_2               15                  7
  CLUS_3                2                  2
  CLUS_4               12                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED       16      6     11      4
  16Q LOSS WILD-TYPE      7      2      7      2
D67V8, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               16                  7
  CLUS_2                6                  2
  CLUS_3               11                  7
  CLUS_4                4                  2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       11     14     12
  16Q LOSS WILD-TYPE      1      9      8
D67V9, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               11                  1
  CLUS_2               14                  9
  CLUS_3               12                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED       17      5     10      5
  16Q LOSS WILD-TYPE      7      2      7      2
D67V10, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               17                  7
  CLUS_2                5                  2
  CLUS_3               10                  7
  CLUS_4                5                  2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = 17P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       11     11     12
  17P LOSS WILD-TYPE      7     10      5
D68V1, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               11                  7
  CLUS_2               11                 10
  CLUS_3               12                  5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P LOSS MUTATED        7      8      4      7      8
  17P LOSS WILD-TYPE      4      1      6      6      5
D68V2, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                7                  4
  CLUS_2                8                  1
  CLUS_3                4                  6
  CLUS_4                7                  6
  CLUS_5                8                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED        7      3     11      7
  17P LOSS WILD-TYPE      2      9      4      4
D68V3, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                7                  2
  CLUS_2                3                  9
  CLUS_3               11                  4
  CLUS_4                7                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17P LOSS MUTATED        5      6      6      3      5      2      1
  17P LOSS WILD-TYPE      3      2      1      4      2      3      4
D68V4, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                5                  3
  CLUS_2                6                  2
  CLUS_3                6                  1
  CLUS_4                3                  4
  CLUS_5                5                  2
  CLUS_6                2                  3
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED        8     12      8      6
  17P LOSS WILD-TYPE      6      8      4      4
D68V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                8                  6
  CLUS_2               12                  8
  CLUS_3                8                  4
  CLUS_4                6                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17P LOSS MUTATED        5      4      4      4      5      4      8
  17P LOSS WILD-TYPE      5      0      4      2      3      2      6
D68V6, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                5                  5
  CLUS_2                4                  0
  CLUS_3                4                  4
  CLUS_4                4                  2
  CLUS_5                5                  3
  CLUS_6                4                  2
  CLUS_7                8                  6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED        7     12      3     12
  17P LOSS WILD-TYPE      3     10      1      7
D68V7, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                7                  3
  CLUS_2               12                 10
  CLUS_3                3                  1
  CLUS_4               12                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       15      4     11      4
  17P LOSS WILD-TYPE      8      4      7      2
D68V8, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               15                  8
  CLUS_2                4                  4
  CLUS_3               11                  7
  CLUS_4                4                  2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       10     13     11
  17P LOSS WILD-TYPE      2     10      9
D68V9, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               10                  2
  CLUS_2               13                 10
  CLUS_3               11                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       16      4     10      4
  17P LOSS WILD-TYPE      8      3      7      3
D68V10, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               16                  8
  CLUS_2                4                  3
  CLUS_3               10                  7
  CLUS_4                4                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = 17Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        3      6      8
  17Q LOSS WILD-TYPE     15     15      9
D69V1, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                6                 15
  CLUS_3                8                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q LOSS MUTATED        4      5      3      3      2
  17Q LOSS WILD-TYPE      7      4      7     10     11
D69V2, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                4                  7
  CLUS_2                5                  4
  CLUS_3                3                  7
  CLUS_4                3                 10
  CLUS_5                2                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED        4      2      4      4
  17Q LOSS WILD-TYPE      5     10     11      7
D69V3, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                4                  5
  CLUS_2                2                 10
  CLUS_3                4                 11
  CLUS_4                4                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17Q LOSS MUTATED        3      3      3      1      3      1      0
  17Q LOSS WILD-TYPE      5      5      4      6      4      4      5
D69V4, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                3                  5
  CLUS_2                3                  5
  CLUS_3                3                  4
  CLUS_4                1                  6
  CLUS_5                3                  4
  CLUS_6                1                  4
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED        5      7      2      3
  17Q LOSS WILD-TYPE      9     13     10      7
D69V5, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                5                  9
  CLUS_2                7                 13
  CLUS_3                2                 10
  CLUS_4                3                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17Q LOSS MUTATED        3      3      2      1      1      1      6
  17Q LOSS WILD-TYPE      7      1      6      5      7      5      8
D69V6, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                3                  1
  CLUS_3                2                  6
  CLUS_4                1                  5
  CLUS_5                1                  7
  CLUS_6                1                  5
  CLUS_7                6                  8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED        3      6      1      7
  17Q LOSS WILD-TYPE      7     16      3     12
D69V7, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                6                 16
  CLUS_3                1                  3
  CLUS_4                7                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED        5      3      5      4
  17Q LOSS WILD-TYPE     18      5     13      2
D69V8, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                5                 18
  CLUS_2                3                  5
  CLUS_3                5                 13
  CLUS_4                4                  2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        3      7      7
  17Q LOSS WILD-TYPE      9     16     13
D69V9, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                3                  9
  CLUS_2                7                 16
  CLUS_3                7                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED        5      3      5      4
  17Q LOSS WILD-TYPE     19      4     12      3
D69V10, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                3                  4
  CLUS_3                5                 12
  CLUS_4                4                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = 18P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        6      3      9
  18P LOSS WILD-TYPE     12     18      8
D70V1, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                6                 12
  CLUS_2                3                 18
  CLUS_3                9                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P LOSS MUTATED        8      1      2      2      5
  18P LOSS WILD-TYPE      3      8      8     11      8
D70V2, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                8                  3
  CLUS_2                1                  8
  CLUS_3                2                  8
  CLUS_4                2                 11
  CLUS_5                5                  8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED        5      4      5      2
  18P LOSS WILD-TYPE      4      8     10      9
D70V3, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                5                  4
  CLUS_2                4                  8
  CLUS_3                5                 10
  CLUS_4                2                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P LOSS MUTATED        6      2      2      1      2      1      2
  18P LOSS WILD-TYPE      2      6      5      6      5      4      3
D70V4, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                6                  2
  CLUS_2                2                  6
  CLUS_3                2                  5
  CLUS_4                1                  6
  CLUS_5                2                  5
  CLUS_6                1                  4
  CLUS_7                2                  3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED        8      3      5      2
  18P LOSS WILD-TYPE      6     17      7      8
D70V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                8                  6
  CLUS_2                3                 17
  CLUS_3                5                  7
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P LOSS MUTATED        7      1      1      2      1      3      3
  18P LOSS WILD-TYPE      3      3      7      4      7      3     11
D70V6, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                7                  3
  CLUS_2                1                  3
  CLUS_3                1                  7
  CLUS_4                2                  4
  CLUS_5                1                  7
  CLUS_6                3                  3
  CLUS_7                3                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED        5     10      0      3
  18P LOSS WILD-TYPE      5     12      4     16
D70V7, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                5                  5
  CLUS_2               10                 12
  CLUS_3                0                  4
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED        6      5      7      0
  18P LOSS WILD-TYPE     17      3     11      6
D70V8, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                6                 17
  CLUS_2                5                  3
  CLUS_3                7                 11
  CLUS_4                0                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        4     11      3
  18P LOSS WILD-TYPE      8     12     17
D70V9, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                4                  8
  CLUS_2               11                 12
  CLUS_3                3                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED        6      4      8      0
  18P LOSS WILD-TYPE     18      3      9      7
D70V10, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                6                 18
  CLUS_2                4                  3
  CLUS_3                8                  9
  CLUS_4                0                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = 18Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        9      4      7
  18Q LOSS WILD-TYPE      9     17     10
D71V1, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                9                  9
  CLUS_2                4                 17
  CLUS_3                7                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q LOSS MUTATED        8      2      2      3      5
  18Q LOSS WILD-TYPE      3      7      8     10      8
D71V2, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                8                  3
  CLUS_2                2                  7
  CLUS_3                2                  8
  CLUS_4                3                 10
  CLUS_5                5                  8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED        6      4      5      3
  18Q LOSS WILD-TYPE      3      8     10      8
D71V3, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                6                  3
  CLUS_2                4                  8
  CLUS_3                5                 10
  CLUS_4                3                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18Q LOSS MUTATED        6      2      3      1      3      1      2
  18Q LOSS WILD-TYPE      2      6      4      6      4      4      3
D71V4, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                6                  2
  CLUS_2                2                  6
  CLUS_3                3                  4
  CLUS_4                1                  6
  CLUS_5                3                  4
  CLUS_6                1                  4
  CLUS_7                2                  3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED        8      5      5      2
  18Q LOSS WILD-TYPE      6     15      7      8
D71V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                8                  6
  CLUS_2                5                 15
  CLUS_3                5                  7
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18Q LOSS MUTATED        7      2      1      2      1      3      4
  18Q LOSS WILD-TYPE      3      2      7      4      7      3     10
D71V6, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                7                  3
  CLUS_2                2                  2
  CLUS_3                1                  7
  CLUS_4                2                  4
  CLUS_5                1                  7
  CLUS_6                3                  3
  CLUS_7                4                 10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED        4     13      0      3
  18Q LOSS WILD-TYPE      6      9      4     16
D71V7, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                4                  6
  CLUS_2               13                  9
  CLUS_3                0                  4
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED        5      6      9      0
  18Q LOSS WILD-TYPE     18      2      9      6
D71V8, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                5                 18
  CLUS_2                6                  2
  CLUS_3                9                  9
  CLUS_4                0                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        3     14      3
  18Q LOSS WILD-TYPE      9      9     17
D71V9, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                3                  9
  CLUS_2               14                  9
  CLUS_3                3                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED        5      5     10      0
  18Q LOSS WILD-TYPE     19      2      7      7
D71V10, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                5                  2
  CLUS_3               10                  7
  CLUS_4                0                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = 19P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        5      7      3
  19P LOSS WILD-TYPE     13     14     14
D72V1, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                5                 13
  CLUS_2                7                 14
  CLUS_3                3                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P LOSS MUTATED        2      4      2      2      5
  19P LOSS WILD-TYPE      9      5      8     11      8
D72V2, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                2                  9
  CLUS_2                4                  5
  CLUS_3                2                  8
  CLUS_4                2                 11
  CLUS_5                5                  8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        3      1      6      1
  19P LOSS WILD-TYPE      6     11      9     10
D72V3, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                3                  6
  CLUS_2                1                 11
  CLUS_3                6                  9
  CLUS_4                1                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19P LOSS MUTATED        1      3      3      2      2      0      0
  19P LOSS WILD-TYPE      7      5      4      5      5      5      5
D72V4, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                3                  5
  CLUS_3                3                  4
  CLUS_4                2                  5
  CLUS_5                2                  5
  CLUS_6                0                  5
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        2      4      6      3
  19P LOSS WILD-TYPE     12     16      6      7
D72V5, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                4                 16
  CLUS_3                6                  6
  CLUS_4                3                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19P LOSS MUTATED        1      1      2      3      3      3      2
  19P LOSS WILD-TYPE      9      3      6      3      5      3     12
D72V6, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                1                  3
  CLUS_3                2                  6
  CLUS_4                3                  3
  CLUS_5                3                  5
  CLUS_6                3                  3
  CLUS_7                2                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        4      6      2      3
  19P LOSS WILD-TYPE      6     16      2     16
D72V7, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                4                  6
  CLUS_2                6                 16
  CLUS_3                2                  2
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        7      1      6      1
  19P LOSS WILD-TYPE     16      7     12      5
D72V8, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                7                 16
  CLUS_2                1                  7
  CLUS_3                6                 12
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        5      7      3
  19P LOSS WILD-TYPE      7     16     17
D72V9, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                5                  7
  CLUS_2                7                 16
  CLUS_3                3                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        7      1      6      1
  19P LOSS WILD-TYPE     17      6     11      6
D72V10, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                7                 17
  CLUS_2                1                  6
  CLUS_3                6                 11
  CLUS_4                1                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = 19Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        4      6      3
  19Q LOSS WILD-TYPE     14     15     14
D73V1, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                4                 14
  CLUS_2                6                 15
  CLUS_3                3                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q LOSS MUTATED        1      5      1      3      3
  19Q LOSS WILD-TYPE     10      4      9     10     10
D73V2, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                5                  4
  CLUS_3                1                  9
  CLUS_4                3                 10
  CLUS_5                3                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        2      1      6      1
  19Q LOSS WILD-TYPE      7     11      9     10
D73V3, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                2                  7
  CLUS_2                1                 11
  CLUS_3                6                  9
  CLUS_4                1                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q LOSS MUTATED        1      3      2      2      1      1      0
  19Q LOSS WILD-TYPE      7      5      5      5      6      4      5
D73V4, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                3                  5
  CLUS_3                2                  5
  CLUS_4                2                  5
  CLUS_5                1                  6
  CLUS_6                1                  4
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        3      4      3      3
  19Q LOSS WILD-TYPE     11     16      9      7
D73V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                4                 16
  CLUS_3                3                  9
  CLUS_4                3                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q LOSS MUTATED        1      2      1      1      3      2      3
  19Q LOSS WILD-TYPE      9      2      7      5      5      4     11
D73V6, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                2                  2
  CLUS_3                1                  7
  CLUS_4                1                  5
  CLUS_5                3                  5
  CLUS_6                2                  4
  CLUS_7                3                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        4      4      2      3
  19Q LOSS WILD-TYPE      6     18      2     16
D73V7, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                4                  6
  CLUS_2                4                 18
  CLUS_3                2                  2
  CLUS_4                3                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        6      1      4      2
  19Q LOSS WILD-TYPE     17      7     14      4
D73V8, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                6                 17
  CLUS_2                1                  7
  CLUS_3                4                 14
  CLUS_4                2                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        5      5      3
  19Q LOSS WILD-TYPE      7     18     17
D73V9, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                5                  7
  CLUS_2                5                 18
  CLUS_3                3                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        6      1      4      2
  19Q LOSS WILD-TYPE     18      6     13      5
D73V10, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                6                 18
  CLUS_2                1                  6
  CLUS_3                4                 13
  CLUS_4                2                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = 20P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        2      4      1
  20P LOSS WILD-TYPE     16     17     16
D74V1, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                2                 16
  CLUS_2                4                 17
  CLUS_3                1                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P LOSS MUTATED        2      0      2      0      3
  20P LOSS WILD-TYPE      9      9      8     13     10
D74V2, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                2                  9
  CLUS_2                0                  9
  CLUS_3                2                  8
  CLUS_4                0                 13
  CLUS_5                3                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        4      1      0      0
  20P LOSS WILD-TYPE      5     11     15     11
D74V3, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                  5
  CLUS_2                1                 11
  CLUS_3                0                 15
  CLUS_4                0                 11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P LOSS MUTATED        0      0      4      1      0      0      0
  20P LOSS WILD-TYPE      8      8      3      6      7      5      5
D74V4, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                0                  8
  CLUS_3                4                  3
  CLUS_4                1                  6
  CLUS_5                0                  7
  CLUS_6                0                  5
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        2      1      4      0
  20P LOSS WILD-TYPE     12     19      8     10
D74V5, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                1                 19
  CLUS_3                4                  8
  CLUS_4                0                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P LOSS MUTATED        1      0      2      2      0      2      0
  20P LOSS WILD-TYPE      9      4      6      4      8      4     14
D74V6, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                0                  4
  CLUS_3                2                  6
  CLUS_4                2                  4
  CLUS_5                0                  8
  CLUS_6                2                  4
  CLUS_7                0                 14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        2      2      1      2
  20P LOSS WILD-TYPE      8     20      3     17
D74V7, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                2                 20
  CLUS_3                1                  3
  CLUS_4                2                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        4      1      1      1
  20P LOSS WILD-TYPE     19      7     17      5
D74V8, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                 19
  CLUS_2                1                  7
  CLUS_3                1                 17
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        1      2      4
  20P LOSS WILD-TYPE     11     21     16
D74V9, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                2                 21
  CLUS_3                4                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        4      1      1      1
  20P LOSS WILD-TYPE     20      6     16      6
D74V10, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                1                  6
  CLUS_3                1                 16
  CLUS_4                1                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = 20Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        1      3      0
  20Q LOSS WILD-TYPE     17     18     17
D75V1, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                3                 18
  CLUS_3                0                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q LOSS MUTATED        1      0      1      0      2
  20Q LOSS WILD-TYPE     10      9      9     13     11
D75V2, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                0                  9
  CLUS_3                1                  9
  CLUS_4                0                 13
  CLUS_5                2                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        2      1      0      0
  20Q LOSS WILD-TYPE      7     11     15     11
D75V3, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                  7
  CLUS_2                1                 11
  CLUS_3                0                 15
  CLUS_4                0                 11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q LOSS MUTATED        0      0      2      1      0      0      0
  20Q LOSS WILD-TYPE      8      8      5      6      7      5      5
D75V4, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                0                  8
  CLUS_3                2                  5
  CLUS_4                1                  6
  CLUS_5                0                  7
  CLUS_6                0                  5
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        2      0      2      0
  20Q LOSS WILD-TYPE     12     20     10     10
D75V5, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                0                 20
  CLUS_3                2                 10
  CLUS_4                0                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q LOSS MUTATED        1      0      1      1      0      1      0
  20Q LOSS WILD-TYPE      9      4      7      5      8      5     14
D75V6, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                0                  4
  CLUS_3                1                  7
  CLUS_4                1                  5
  CLUS_5                0                  8
  CLUS_6                1                  5
  CLUS_7                0                 14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        1      2      0      1
  20Q LOSS WILD-TYPE      9     20      4     18
D75V7, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                2                 20
  CLUS_3                0                  4
  CLUS_4                1                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        2      1      1      0
  20Q LOSS WILD-TYPE     21      7     17      6
D75V8, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                1                  7
  CLUS_3                1                 17
  CLUS_4                0                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        0      2      2
  20Q LOSS WILD-TYPE     12     21     18
D75V9, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                2                 21
  CLUS_3                2                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        2      1      1      0
  20Q LOSS WILD-TYPE     22      6     16      7
D75V10, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                1                  6
  CLUS_3                1                 16
  CLUS_4                0                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = 21Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        5      8      4
  21Q LOSS WILD-TYPE     13     13     13
D76V1, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                5                 13
  CLUS_2                8                 13
  CLUS_3                4                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q LOSS MUTATED        5      2      3      1      6
  21Q LOSS WILD-TYPE      6      7      7     12      7
D76V2, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                5                  6
  CLUS_2                2                  7
  CLUS_3                3                  7
  CLUS_4                1                 12
  CLUS_5                6                  7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED        3      3      4      5
  21Q LOSS WILD-TYPE      6      9     11      6
D76V3, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                3                  6
  CLUS_2                3                  9
  CLUS_3                4                 11
  CLUS_4                5                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  21Q LOSS MUTATED        4      1      2      2      4      2      0
  21Q LOSS WILD-TYPE      4      7      5      5      3      3      5
D76V4, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                4                  4
  CLUS_2                1                  7
  CLUS_3                2                  5
  CLUS_4                2                  5
  CLUS_5                4                  3
  CLUS_6                2                  3
  CLUS_7                0                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED        6      5      4      2
  21Q LOSS WILD-TYPE      8     15      8      8
D76V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                6                  8
  CLUS_2                5                 15
  CLUS_3                4                  8
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  21Q LOSS MUTATED        4      1      3      3      1      2      3
  21Q LOSS WILD-TYPE      6      3      5      3      7      4     11
D76V6, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                4                  6
  CLUS_2                1                  3
  CLUS_3                3                  5
  CLUS_4                3                  3
  CLUS_5                1                  7
  CLUS_6                2                  4
  CLUS_7                3                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED        3      7      0      7
  21Q LOSS WILD-TYPE      7     15      4     12
D76V7, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                7                 15
  CLUS_3                0                  4
  CLUS_4                7                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED        7      3      5      2
  21Q LOSS WILD-TYPE     16      5     13      4
D76V8, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                7                 16
  CLUS_2                3                  5
  CLUS_3                5                 13
  CLUS_4                2                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        3      7      7
  21Q LOSS WILD-TYPE      9     16     13
D76V9, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                3                  9
  CLUS_2                7                 16
  CLUS_3                7                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED        7      3      5      2
  21Q LOSS WILD-TYPE     17      4     12      5
D76V10, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                7                 17
  CLUS_2                3                  4
  CLUS_3                5                 12
  CLUS_4                2                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = 22Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       11     15      7
  22Q LOSS WILD-TYPE      7      6     10
D77V1, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               11                  7
  CLUS_2               15                  6
  CLUS_3                7                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q LOSS MUTATED        7      5      5      8      8
  22Q LOSS WILD-TYPE      4      4      5      5      5
D77V2, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                7                  4
  CLUS_2                5                  4
  CLUS_3                5                  5
  CLUS_4                8                  5
  CLUS_5                8                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED        6      5     12      7
  22Q LOSS WILD-TYPE      3      7      3      4
D77V3, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                6                  3
  CLUS_2                5                  7
  CLUS_3               12                  3
  CLUS_4                7                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q LOSS MUTATED        5      6      4      6      7      1      1
  22Q LOSS WILD-TYPE      3      2      3      1      0      4      4
D77V4, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                5                  3
  CLUS_2                6                  2
  CLUS_3                4                  3
  CLUS_4                6                  1
  CLUS_5                7                  0
  CLUS_6                1                  4
  CLUS_7                1                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED        8     11      8      6
  22Q LOSS WILD-TYPE      6      9      4      4
D77V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                8                  6
  CLUS_2               11                  9
  CLUS_3                8                  4
  CLUS_4                6                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q LOSS MUTATED        5      3      6      4      5      3      7
  22Q LOSS WILD-TYPE      5      1      2      2      3      3      7
D77V6, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                5                  5
  CLUS_2                3                  1
  CLUS_3                6                  2
  CLUS_4                4                  2
  CLUS_5                5                  3
  CLUS_6                3                  3
  CLUS_7                7                  7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED        6     15      2     10
  22Q LOSS WILD-TYPE      4      7      2      9
D77V7, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                6                  4
  CLUS_2               15                  7
  CLUS_3                2                  2
  CLUS_4               10                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED       12      4     14      3
  22Q LOSS WILD-TYPE     11      4      4      3
D77V8, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               12                 11
  CLUS_2                4                  4
  CLUS_3               14                  4
  CLUS_4                3                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        6     16     11
  22Q LOSS WILD-TYPE      6      7      9
D77V9, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                6                  6
  CLUS_2               16                  7
  CLUS_3               11                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED       13      4     12      4
  22Q LOSS WILD-TYPE     11      3      5      3
D77V10, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               13                 11
  CLUS_2                4                  3
  CLUS_3               12                  5
  CLUS_4                4                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = XP LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP LOSS MUTATED        6      4      5
  XP LOSS WILD-TYPE     12     17     12
D78V1, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               6                12
  CLUS_2               4                17
  CLUS_3               5                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XP LOSS MUTATED        2      2      2      5      4
  XP LOSS WILD-TYPE      9      7      8      8      9
D78V2, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               2                 9
  CLUS_2               2                 7
  CLUS_3               2                 8
  CLUS_4               5                 8
  CLUS_5               4                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP LOSS MUTATED        4      3      6      1
  XP LOSS WILD-TYPE      5      9      9     10
D78V3, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               4                 5
  CLUS_2               3                 9
  CLUS_3               6                 9
  CLUS_4               1                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XP LOSS MUTATED        2      1      3      4      3      0      1
  XP LOSS WILD-TYPE      6      7      4      3      4      5      4
D78V4, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               2                 6
  CLUS_2               1                 7
  CLUS_3               3                 4
  CLUS_4               4                 3
  CLUS_5               3                 4
  CLUS_6               0                 5
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP LOSS MUTATED        4      5      4      2
  XP LOSS WILD-TYPE     10     15      8      8
D78V5, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               4                10
  CLUS_2               5                15
  CLUS_3               4                 8
  CLUS_4               2                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XP LOSS MUTATED        2      1      2      1      2      3      4
  XP LOSS WILD-TYPE      8      3      6      5      6      3     10
D78V6, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               1                 3
  CLUS_3               2                 6
  CLUS_4               1                 5
  CLUS_5               2                 6
  CLUS_6               3                 3
  CLUS_7               4                10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP LOSS MUTATED        4      7      1      3
  XP LOSS WILD-TYPE      6     15      3     16
D78V7, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               4                 6
  CLUS_2               7                15
  CLUS_3               1                 3
  CLUS_4               3                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP LOSS MUTATED        5      2      7      1
  XP LOSS WILD-TYPE     18      6     11      5
D78V8, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               5                18
  CLUS_2               2                 6
  CLUS_3               7                11
  CLUS_4               1                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP LOSS MUTATED        2      8      5
  XP LOSS WILD-TYPE     10     15     15
D78V9, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               2                10
  CLUS_2               8                15
  CLUS_3               5                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP LOSS MUTATED        5      2      6      2
  XP LOSS WILD-TYPE     19      5     11      5
D78V10, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               5                19
  CLUS_2               2                 5
  CLUS_3               6                11
  CLUS_4               2                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = XQ LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        7      6      5
  XQ LOSS WILD-TYPE     11     15     12
D79V1, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               7                11
  CLUS_2               6                15
  CLUS_3               5                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ LOSS MUTATED        1      5      2      6      4
  XQ LOSS WILD-TYPE     10      4      8      7      9
D79V2, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               1                10
  CLUS_2               5                 4
  CLUS_3               2                 8
  CLUS_4               6                 7
  CLUS_5               4                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        3      3      7      2
  XQ LOSS WILD-TYPE      6      9      8      9
D79V3, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               3                 6
  CLUS_2               3                 9
  CLUS_3               7                 8
  CLUS_4               2                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ LOSS MUTATED        1      2      4      4      3      0      1
  XQ LOSS WILD-TYPE      7      6      3      3      4      5      4
D79V4, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               2                 6
  CLUS_3               4                 3
  CLUS_4               4                 3
  CLUS_5               3                 4
  CLUS_6               0                 5
  CLUS_7               1                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        3      6      3      6
  XQ LOSS WILD-TYPE     11     14      9      4
D79V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               3                11
  CLUS_2               6                14
  CLUS_3               3                 9
  CLUS_4               6                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ LOSS MUTATED        1      2      2      2      4      2      5
  XQ LOSS WILD-TYPE      9      2      6      4      4      4      9
D79V6, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               2                 2
  CLUS_3               2                 6
  CLUS_4               2                 4
  CLUS_5               4                 4
  CLUS_6               2                 4
  CLUS_7               5                 9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        5      6      2      5
  XQ LOSS WILD-TYPE      5     16      2     14
D79V7, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               5                 5
  CLUS_2               6                16
  CLUS_3               2                 2
  CLUS_4               5                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        8      1      7      2
  XQ LOSS WILD-TYPE     15      7     11      4
D79V8, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               8                15
  CLUS_2               1                 7
  CLUS_3               7                11
  CLUS_4               2                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        5      8      5
  XQ LOSS WILD-TYPE      7     15     15
D79V9, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               5                 7
  CLUS_2               8                15
  CLUS_3               5                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        8      1      7      2
  XQ LOSS WILD-TYPE     16      6     10      5
D79V10, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               8                16
  CLUS_2               1                 6
  CLUS_3               7                10
  CLUS_4               2                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
