[1] "ofn"       "-oTUVM-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/UVM-TP/19785804/UVM-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UVM-TP/19783311/transformed.cor.cli.txt"

nPatients in clinical file=80, in cluster file=80, common to both=80
[1] "Reduce the number of clustering variables from 22 to 20."
[1] 20 80
[1] "AMP PEAK 1(6P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 1(6P24.3) MUTATED AMP PEAK 1(6P24.3) WILD-TYPE 
                          45                           35 
  AMP PEAK 1(6P24.3) MUTATED AMP PEAK 1(6P24.3) WILD-TYPE 
                          45                           35 
[1] "AMP PEAK 2(8Q24.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 2(8Q24.22) MUTATED AMP PEAK 2(8Q24.22) WILD-TYPE 
                           61                            19 
  AMP PEAK 2(8Q24.22) MUTATED AMP PEAK 2(8Q24.22) WILD-TYPE 
                           61                            19 
[1] "AMP PEAK 3(17Q25.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 3(17Q25.3) MUTATED AMP PEAK 3(17Q25.3) WILD-TYPE 
                           14                            66 
  AMP PEAK 3(17Q25.3) MUTATED AMP PEAK 3(17Q25.3) WILD-TYPE 
                           14                            66 
[1] "DEL PEAK  1(1P36.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                            24                             56 
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                            24                             56 
[1] "DEL PEAK  2(2Q37.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(2Q37.2) MUTATED DEL PEAK  2(2Q37.2) WILD-TYPE 
                            3                            77 
  DEL PEAK  2(2Q37.2) MUTATED DEL PEAK  2(2Q37.2) WILD-TYPE 
                            3                            77 
[1] "DEL PEAK  3(3P25.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(3P25.2) MUTATED DEL PEAK  3(3P25.2) WILD-TYPE 
                           43                            37 
  DEL PEAK  3(3P25.2) MUTATED DEL PEAK  3(3P25.2) WILD-TYPE 
                           43                            37 
[1] "DEL PEAK  4(3P25.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE 
                           43                            37 
  DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE 
                           43                            37 
[1] "DEL PEAK  5(3P22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P22.2) MUTATED DEL PEAK  5(3P22.2) WILD-TYPE 
                           43                            37 
  DEL PEAK  5(3P22.2) MUTATED DEL PEAK  5(3P22.2) WILD-TYPE 
                           43                            37 
[1] "DEL PEAK  6(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE 
                           44                            36 
  DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE 
                           44                            36 
[1] "DEL PEAK  7(3Q24) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3Q24) MUTATED DEL PEAK  7(3Q24) WILD-TYPE 
                         44                          36 
  DEL PEAK  7(3Q24) MUTATED DEL PEAK  7(3Q24) WILD-TYPE 
                         44                          36 
[1] "DEL PEAK  8(3Q29) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE 
                         44                          36 
  DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE 
                         44                          36 
[1] "DEL PEAK  9(5Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(5Q23.1) MUTATED DEL PEAK  9(5Q23.1) WILD-TYPE 
                            4                            76 
  DEL PEAK  9(5Q23.1) MUTATED DEL PEAK  9(5Q23.1) WILD-TYPE 
                            4                            76 
[1] "DEL PEAK 10(6Q22.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE 
                            24                             56 
  DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE 
                            24                             56 
[1] "DEL PEAK 11(6Q27) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                         24                          56 
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                         24                          56 
[1] "DEL PEAK 12(8P11.22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(8P11.22) MUTATED DEL PEAK 12(8P11.22) WILD-TYPE 
                            19                             61 
  DEL PEAK 12(8P11.22) MUTATED DEL PEAK 12(8P11.22) WILD-TYPE 
                            19                             61 
[1] "DEL PEAK 15(11Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(11Q24.3) MUTATED DEL PEAK 15(11Q24.3) WILD-TYPE 
                             7                             73 
  DEL PEAK 15(11Q24.3) MUTATED DEL PEAK 15(11Q24.3) WILD-TYPE 
                             7                             73 
[1] "DEL PEAK 16(16Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(16Q12.1) MUTATED DEL PEAK 16(16Q12.1) WILD-TYPE 
                            16                             64 
  DEL PEAK 16(16Q12.1) MUTATED DEL PEAK 16(16Q12.1) WILD-TYPE 
                            16                             64 
[1] "DEL PEAK 17(16Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(16Q23.3) MUTATED DEL PEAK 17(16Q23.3) WILD-TYPE 
                            17                             63 
  DEL PEAK 17(16Q23.3) MUTATED DEL PEAK 17(16Q23.3) WILD-TYPE 
                            17                             63 
[1] "DEL PEAK 18(16Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(16Q24.3) MUTATED DEL PEAK 18(16Q24.3) WILD-TYPE 
                            17                             63 
  DEL PEAK 18(16Q24.3) MUTATED DEL PEAK 18(16Q24.3) WILD-TYPE 
                            17                             63 
[1] "DEL PEAK 19(17Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(17Q12) MUTATED DEL PEAK 19(17Q12) WILD-TYPE 
                           3                           77 
  DEL PEAK 19(17Q12) MUTATED DEL PEAK 19(17Q12) WILD-TYPE 
                           3                           77 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 80 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 80 columns, 0 survival variables, and 8 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK 1(6P24.3) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(6P24.3) MUTATED        9     32      4
  AMP PEAK 1(6P24.3) WILD-TYPE     13      4     18
D1V1, multiclass
        clus
vv       AMP PEAK 1(6P24.3) MUTATED AMP PEAK 1(6P24.3) WILD-TYPE
  CLUS_1                          9                           13
  CLUS_2                         32                            4
  CLUS_3                          4                           18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(6P24.3) MUTATED       10      8     27
  AMP PEAK 1(6P24.3) WILD-TYPE     23     10      2
D1V2, multiclass
        clus
vv       AMP PEAK 1(6P24.3) MUTATED AMP PEAK 1(6P24.3) WILD-TYPE
  CLUS_1                         10                           23
  CLUS_2                          8                           10
  CLUS_3                         27                            2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(6P24.3) MUTATED        8      6     31
  AMP PEAK 1(6P24.3) WILD-TYPE     22      9      4
D1V3, multiclass
        clus
vv       AMP PEAK 1(6P24.3) MUTATED AMP PEAK 1(6P24.3) WILD-TYPE
  CLUS_1                          8                           22
  CLUS_2                          6                            9
  CLUS_3                         31                            4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(6P24.3) MUTATED        9     30      6
  AMP PEAK 1(6P24.3) WILD-TYPE     20      3     12
D1V4, multiclass
        clus
vv       AMP PEAK 1(6P24.3) MUTATED AMP PEAK 1(6P24.3) WILD-TYPE
  CLUS_1                          9                           20
  CLUS_2                         30                            3
  CLUS_3                          6                           12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(6P24.3) MUTATED       12      5     28
  AMP PEAK 1(6P24.3) WILD-TYPE     22     12      1
D1V5, multiclass
        clus
vv       AMP PEAK 1(6P24.3) MUTATED AMP PEAK 1(6P24.3) WILD-TYPE
  CLUS_1                         12                           22
  CLUS_2                          5                           12
  CLUS_3                         28                            1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(6P24.3) MUTATED        4      9     27      5
  AMP PEAK 1(6P24.3) WILD-TYPE     13      4      1     17
D1V6, multiclass
        clus
vv       AMP PEAK 1(6P24.3) MUTATED AMP PEAK 1(6P24.3) WILD-TYPE
  CLUS_1                          4                           13
  CLUS_2                          9                            4
  CLUS_3                         27                            1
  CLUS_4                          5                           17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(6P24.3) MUTATED       12     24      5
  AMP PEAK 1(6P24.3) WILD-TYPE     20      4      9
D1V7, multiclass
        clus
vv       AMP PEAK 1(6P24.3) MUTATED AMP PEAK 1(6P24.3) WILD-TYPE
  CLUS_1                         12                           20
  CLUS_2                         24                            4
  CLUS_3                          5                            9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 1(6P24.3) MUTATED        1      6     12     15      1      6
  AMP PEAK 1(6P24.3) WILD-TYPE      4      6      4      1     14      4
D1V8, multiclass
        clus
vv       AMP PEAK 1(6P24.3) MUTATED AMP PEAK 1(6P24.3) WILD-TYPE
  CLUS_1                          1                            4
  CLUS_2                          6                            6
  CLUS_3                         12                            4
  CLUS_4                         15                            1
  CLUS_5                          1                           14
  CLUS_6                          6                            4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK 2(8Q24.22) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(8Q24.22) MUTATED       22     19     20
  AMP PEAK 2(8Q24.22) WILD-TYPE      0     17      2
D2V1, multiclass
        clus
vv       AMP PEAK 2(8Q24.22) MUTATED AMP PEAK 2(8Q24.22) WILD-TYPE
  CLUS_1                          22                             0
  CLUS_2                          19                            17
  CLUS_3                          20                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(8Q24.22) MUTATED       32     13     16
  AMP PEAK 2(8Q24.22) WILD-TYPE      1      5     13
D2V2, multiclass
        clus
vv       AMP PEAK 2(8Q24.22) MUTATED AMP PEAK 2(8Q24.22) WILD-TYPE
  CLUS_1                          32                             1
  CLUS_2                          13                             5
  CLUS_3                          16                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(8Q24.22) MUTATED       28     12     21
  AMP PEAK 2(8Q24.22) WILD-TYPE      2      3     14
D2V3, multiclass
        clus
vv       AMP PEAK 2(8Q24.22) MUTATED AMP PEAK 2(8Q24.22) WILD-TYPE
  CLUS_1                          28                             2
  CLUS_2                          12                             3
  CLUS_3                          21                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(8Q24.22) MUTATED       28     19     14
  AMP PEAK 2(8Q24.22) WILD-TYPE      1     14      4
D2V4, multiclass
        clus
vv       AMP PEAK 2(8Q24.22) MUTATED AMP PEAK 2(8Q24.22) WILD-TYPE
  CLUS_1                          28                             1
  CLUS_2                          19                            14
  CLUS_3                          14                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(8Q24.22) MUTATED       32     10     19
  AMP PEAK 2(8Q24.22) WILD-TYPE      2      7     10
D2V5, multiclass
        clus
vv       AMP PEAK 2(8Q24.22) MUTATED AMP PEAK 2(8Q24.22) WILD-TYPE
  CLUS_1                          32                             2
  CLUS_2                          10                             7
  CLUS_3                          19                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(8Q24.22) MUTATED       16      6     18     21
  AMP PEAK 2(8Q24.22) WILD-TYPE      1      7     10      1
D2V6, multiclass
        clus
vv       AMP PEAK 2(8Q24.22) MUTATED AMP PEAK 2(8Q24.22) WILD-TYPE
  CLUS_1                          16                             1
  CLUS_2                           6                             7
  CLUS_3                          18                            10
  CLUS_4                          21                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(8Q24.22) MUTATED       31     15     12
  AMP PEAK 2(8Q24.22) WILD-TYPE      1     13      2
D2V7, multiclass
        clus
vv       AMP PEAK 2(8Q24.22) MUTATED AMP PEAK 2(8Q24.22) WILD-TYPE
  CLUS_1                          31                             1
  CLUS_2                          15                            13
  CLUS_3                          12                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 2(8Q24.22) MUTATED        5     11      6     12     14     10
  AMP PEAK 2(8Q24.22) WILD-TYPE      0      1     10      4      1      0
D2V8, multiclass
        clus
vv       AMP PEAK 2(8Q24.22) MUTATED AMP PEAK 2(8Q24.22) WILD-TYPE
  CLUS_1                           5                             0
  CLUS_2                          11                             1
  CLUS_3                           6                            10
  CLUS_4                          12                             4
  CLUS_5                          14                             1
  CLUS_6                          10                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK 3(17Q25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(17Q25.3) MUTATED        1      8      5
  AMP PEAK 3(17Q25.3) WILD-TYPE     21     28     17
D3V1, multiclass
        clus
vv       AMP PEAK 3(17Q25.3) MUTATED AMP PEAK 3(17Q25.3) WILD-TYPE
  CLUS_1                           1                            21
  CLUS_2                           8                            28
  CLUS_3                           5                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(17Q25.3) MUTATED        4      1      9
  AMP PEAK 3(17Q25.3) WILD-TYPE     29     17     20
D3V2, multiclass
        clus
vv       AMP PEAK 3(17Q25.3) MUTATED AMP PEAK 3(17Q25.3) WILD-TYPE
  CLUS_1                           4                            29
  CLUS_2                           1                            17
  CLUS_3                           9                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(17Q25.3) MUTATED        2      4      8
  AMP PEAK 3(17Q25.3) WILD-TYPE     28     11     27
D3V3, multiclass
        clus
vv       AMP PEAK 3(17Q25.3) MUTATED AMP PEAK 3(17Q25.3) WILD-TYPE
  CLUS_1                           2                            28
  CLUS_2                           4                            11
  CLUS_3                           8                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(17Q25.3) MUTATED        2      7      5
  AMP PEAK 3(17Q25.3) WILD-TYPE     27     26     13
D3V4, multiclass
        clus
vv       AMP PEAK 3(17Q25.3) MUTATED AMP PEAK 3(17Q25.3) WILD-TYPE
  CLUS_1                           2                            27
  CLUS_2                           7                            26
  CLUS_3                           5                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(17Q25.3) MUTATED        4      0     10
  AMP PEAK 3(17Q25.3) WILD-TYPE     30     17     19
D3V5, multiclass
        clus
vv       AMP PEAK 3(17Q25.3) MUTATED AMP PEAK 3(17Q25.3) WILD-TYPE
  CLUS_1                           4                            30
  CLUS_2                           0                            17
  CLUS_3                          10                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(17Q25.3) MUTATED        3      0     11      0
  AMP PEAK 3(17Q25.3) WILD-TYPE     14     13     17     22
D3V6, multiclass
        clus
vv       AMP PEAK 3(17Q25.3) MUTATED AMP PEAK 3(17Q25.3) WILD-TYPE
  CLUS_1                           3                            14
  CLUS_2                           0                            13
  CLUS_3                          11                            17
  CLUS_4                           0                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(17Q25.3) MUTATED        5      8      1
  AMP PEAK 3(17Q25.3) WILD-TYPE     27     20     13
D3V7, multiclass
        clus
vv       AMP PEAK 3(17Q25.3) MUTATED AMP PEAK 3(17Q25.3) WILD-TYPE
  CLUS_1                           5                            27
  CLUS_2                           8                            20
  CLUS_3                           1                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 3(17Q25.3) MUTATED        0      4      3      5      1      1
  AMP PEAK 3(17Q25.3) WILD-TYPE      5      8     13     11     14      9
D3V8, multiclass
        clus
vv       AMP PEAK 3(17Q25.3) MUTATED AMP PEAK 3(17Q25.3) WILD-TYPE
  CLUS_1                           0                             5
  CLUS_2                           4                             8
  CLUS_3                           3                            13
  CLUS_4                           5                            11
  CLUS_5                           1                            14
  CLUS_6                           1                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = DEL PEAK  1(1P36.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED        4      6     14
  DEL PEAK  1(1P36.21) WILD-TYPE     18     30      8
D4V1, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            4                             18
  CLUS_2                            6                             30
  CLUS_3                           14                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       11      9      4
  DEL PEAK  1(1P36.21) WILD-TYPE     22      9     25
D4V2, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           11                             22
  CLUS_2                            9                              9
  CLUS_3                            4                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       11      5      8
  DEL PEAK  1(1P36.21) WILD-TYPE     19     10     27
D4V3, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           11                             19
  CLUS_2                            5                             10
  CLUS_3                            8                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       11      6      7
  DEL PEAK  1(1P36.21) WILD-TYPE     18     27     11
D4V4, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           11                             18
  CLUS_2                            6                             27
  CLUS_3                            7                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       10      7      7
  DEL PEAK  1(1P36.21) WILD-TYPE     24     10     22
D4V5, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           10                             24
  CLUS_2                            7                             10
  CLUS_3                            7                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED        5      2      8      9
  DEL PEAK  1(1P36.21) WILD-TYPE     12     11     20     13
D4V6, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            5                             12
  CLUS_2                            2                             11
  CLUS_3                            8                             20
  CLUS_4                            9                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       10      7      7
  DEL PEAK  1(1P36.21) WILD-TYPE     22     21      7
D4V7, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           10                             22
  CLUS_2                            7                             21
  CLUS_3                            7                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.21) MUTATED        2      4      4      4      8      2
  DEL PEAK  1(1P36.21) WILD-TYPE      3      8     12     12      7      8
D4V8, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            2                              3
  CLUS_2                            4                              8
  CLUS_3                            4                             12
  CLUS_4                            4                             12
  CLUS_5                            8                              7
  CLUS_6                            2                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = DEL PEAK  2(2Q37.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2Q37.2) MUTATED        0      3      0
  DEL PEAK  2(2Q37.2) WILD-TYPE     22     33     22
D5V1, multiclass
        clus
vv       DEL PEAK  2(2Q37.2) MUTATED DEL PEAK  2(2Q37.2) WILD-TYPE
  CLUS_1                           0                            22
  CLUS_2                           3                            33
  CLUS_3                           0                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2Q37.2) MUTATED        0      0      3
  DEL PEAK  2(2Q37.2) WILD-TYPE     33     18     26
D5V2, multiclass
        clus
vv       DEL PEAK  2(2Q37.2) MUTATED DEL PEAK  2(2Q37.2) WILD-TYPE
  CLUS_1                           0                            33
  CLUS_2                           0                            18
  CLUS_3                           3                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2Q37.2) MUTATED        0      0      3
  DEL PEAK  2(2Q37.2) WILD-TYPE     30     15     32
D5V3, multiclass
        clus
vv       DEL PEAK  2(2Q37.2) MUTATED DEL PEAK  2(2Q37.2) WILD-TYPE
  CLUS_1                           0                            30
  CLUS_2                           0                            15
  CLUS_3                           3                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2Q37.2) MUTATED        0      3      0
  DEL PEAK  2(2Q37.2) WILD-TYPE     29     30     18
D5V4, multiclass
        clus
vv       DEL PEAK  2(2Q37.2) MUTATED DEL PEAK  2(2Q37.2) WILD-TYPE
  CLUS_1                           0                            29
  CLUS_2                           3                            30
  CLUS_3                           0                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2Q37.2) MUTATED        0      1      2
  DEL PEAK  2(2Q37.2) WILD-TYPE     34     16     27
D5V5, multiclass
        clus
vv       DEL PEAK  2(2Q37.2) MUTATED DEL PEAK  2(2Q37.2) WILD-TYPE
  CLUS_1                           0                            34
  CLUS_2                           1                            16
  CLUS_3                           2                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2Q37.2) MUTATED        0      1      2      0
  DEL PEAK  2(2Q37.2) WILD-TYPE     17     12     26     22
D5V6, multiclass
        clus
vv       DEL PEAK  2(2Q37.2) MUTATED DEL PEAK  2(2Q37.2) WILD-TYPE
  CLUS_1                           0                            17
  CLUS_2                           1                            12
  CLUS_3                           2                            26
  CLUS_4                           0                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2Q37.2) MUTATED        0      2      1
  DEL PEAK  2(2Q37.2) WILD-TYPE     32     26     13
D5V7, multiclass
        clus
vv       DEL PEAK  2(2Q37.2) MUTATED DEL PEAK  2(2Q37.2) WILD-TYPE
  CLUS_1                           0                            32
  CLUS_2                           2                            26
  CLUS_3                           1                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(2Q37.2) MUTATED        0      0      1      2      0      0
  DEL PEAK  2(2Q37.2) WILD-TYPE      5     12     15     14     15     10
D5V8, multiclass
        clus
vv       DEL PEAK  2(2Q37.2) MUTATED DEL PEAK  2(2Q37.2) WILD-TYPE
  CLUS_1                           0                             5
  CLUS_2                           0                            12
  CLUS_3                           1                            15
  CLUS_4                           2                            14
  CLUS_5                           0                            15
  CLUS_6                           0                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = DEL PEAK  3(3P25.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P25.2) MUTATED       22      2     19
  DEL PEAK  3(3P25.2) WILD-TYPE      0     34      3
D6V1, multiclass
        clus
vv       DEL PEAK  3(3P25.2) MUTATED DEL PEAK  3(3P25.2) WILD-TYPE
  CLUS_1                          22                             0
  CLUS_2                           2                            34
  CLUS_3                          19                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P25.2) MUTATED       33      9      1
  DEL PEAK  3(3P25.2) WILD-TYPE      0      9     28
D6V2, multiclass
        clus
vv       DEL PEAK  3(3P25.2) MUTATED DEL PEAK  3(3P25.2) WILD-TYPE
  CLUS_1                          33                             0
  CLUS_2                           9                             9
  CLUS_3                           1                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P25.2) MUTATED       30     10      3
  DEL PEAK  3(3P25.2) WILD-TYPE      0      5     32
D6V3, multiclass
        clus
vv       DEL PEAK  3(3P25.2) MUTATED DEL PEAK  3(3P25.2) WILD-TYPE
  CLUS_1                          30                             0
  CLUS_2                          10                             5
  CLUS_3                           3                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P25.2) MUTATED       29      2     12
  DEL PEAK  3(3P25.2) WILD-TYPE      0     31      6
D6V4, multiclass
        clus
vv       DEL PEAK  3(3P25.2) MUTATED DEL PEAK  3(3P25.2) WILD-TYPE
  CLUS_1                          29                             0
  CLUS_2                           2                            31
  CLUS_3                          12                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P25.2) MUTATED       29     12      2
  DEL PEAK  3(3P25.2) WILD-TYPE      5      5     27
D6V5, multiclass
        clus
vv       DEL PEAK  3(3P25.2) MUTATED DEL PEAK  3(3P25.2) WILD-TYPE
  CLUS_1                          29                             5
  CLUS_2                          12                             5
  CLUS_3                           2                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(3P25.2) MUTATED       17      1      3     22
  DEL PEAK  3(3P25.2) WILD-TYPE      0     12     25      0
D6V6, multiclass
        clus
vv       DEL PEAK  3(3P25.2) MUTATED DEL PEAK  3(3P25.2) WILD-TYPE
  CLUS_1                          17                             0
  CLUS_2                           1                            12
  CLUS_3                           3                            25
  CLUS_4                          22                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P25.2) MUTATED       29      4      9
  DEL PEAK  3(3P25.2) WILD-TYPE      3     24      5
D6V7, multiclass
        clus
vv       DEL PEAK  3(3P25.2) MUTATED DEL PEAK  3(3P25.2) WILD-TYPE
  CLUS_1                          29                             3
  CLUS_2                           4                            24
  CLUS_3                           9                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(3P25.2) MUTATED        5      7      4      1     15     10
  DEL PEAK  3(3P25.2) WILD-TYPE      0      5     12     15      0      0
D6V8, multiclass
        clus
vv       DEL PEAK  3(3P25.2) MUTATED DEL PEAK  3(3P25.2) WILD-TYPE
  CLUS_1                           5                             0
  CLUS_2                           7                             5
  CLUS_3                           4                            12
  CLUS_4                           1                            15
  CLUS_5                          15                             0
  CLUS_6                          10                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = DEL PEAK  4(3P25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P25.1) MUTATED       22      2     19
  DEL PEAK  4(3P25.1) WILD-TYPE      0     34      3
D7V1, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          22                             0
  CLUS_2                           2                            34
  CLUS_3                          19                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P25.1) MUTATED       33      9      1
  DEL PEAK  4(3P25.1) WILD-TYPE      0      9     28
D7V2, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          33                             0
  CLUS_2                           9                             9
  CLUS_3                           1                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P25.1) MUTATED       30     10      3
  DEL PEAK  4(3P25.1) WILD-TYPE      0      5     32
D7V3, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          30                             0
  CLUS_2                          10                             5
  CLUS_3                           3                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P25.1) MUTATED       29      2     12
  DEL PEAK  4(3P25.1) WILD-TYPE      0     31      6
D7V4, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          29                             0
  CLUS_2                           2                            31
  CLUS_3                          12                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P25.1) MUTATED       29     12      2
  DEL PEAK  4(3P25.1) WILD-TYPE      5      5     27
D7V5, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          29                             5
  CLUS_2                          12                             5
  CLUS_3                           2                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P25.1) MUTATED       17      1      3     22
  DEL PEAK  4(3P25.1) WILD-TYPE      0     12     25      0
D7V6, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          17                             0
  CLUS_2                           1                            12
  CLUS_3                           3                            25
  CLUS_4                          22                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P25.1) MUTATED       29      4      9
  DEL PEAK  4(3P25.1) WILD-TYPE      3     24      5
D7V7, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          29                             3
  CLUS_2                           4                            24
  CLUS_3                           9                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P25.1) MUTATED        5      7      4      1     15     10
  DEL PEAK  4(3P25.1) WILD-TYPE      0      5     12     15      0      0
D7V8, multiclass
        clus
vv       DEL PEAK  4(3P25.1) MUTATED DEL PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                           5                             0
  CLUS_2                           7                             5
  CLUS_3                           4                            12
  CLUS_4                           1                            15
  CLUS_5                          15                             0
  CLUS_6                          10                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = DEL PEAK  5(3P22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.2) MUTATED       22      2     19
  DEL PEAK  5(3P22.2) WILD-TYPE      0     34      3
D8V1, multiclass
        clus
vv       DEL PEAK  5(3P22.2) MUTATED DEL PEAK  5(3P22.2) WILD-TYPE
  CLUS_1                          22                             0
  CLUS_2                           2                            34
  CLUS_3                          19                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.2) MUTATED       33      9      1
  DEL PEAK  5(3P22.2) WILD-TYPE      0      9     28
D8V2, multiclass
        clus
vv       DEL PEAK  5(3P22.2) MUTATED DEL PEAK  5(3P22.2) WILD-TYPE
  CLUS_1                          33                             0
  CLUS_2                           9                             9
  CLUS_3                           1                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.2) MUTATED       30     10      3
  DEL PEAK  5(3P22.2) WILD-TYPE      0      5     32
D8V3, multiclass
        clus
vv       DEL PEAK  5(3P22.2) MUTATED DEL PEAK  5(3P22.2) WILD-TYPE
  CLUS_1                          30                             0
  CLUS_2                          10                             5
  CLUS_3                           3                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.2) MUTATED       29      2     12
  DEL PEAK  5(3P22.2) WILD-TYPE      0     31      6
D8V4, multiclass
        clus
vv       DEL PEAK  5(3P22.2) MUTATED DEL PEAK  5(3P22.2) WILD-TYPE
  CLUS_1                          29                             0
  CLUS_2                           2                            31
  CLUS_3                          12                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.2) MUTATED       29     12      2
  DEL PEAK  5(3P22.2) WILD-TYPE      5      5     27
D8V5, multiclass
        clus
vv       DEL PEAK  5(3P22.2) MUTATED DEL PEAK  5(3P22.2) WILD-TYPE
  CLUS_1                          29                             5
  CLUS_2                          12                             5
  CLUS_3                           2                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P22.2) MUTATED       17      1      3     22
  DEL PEAK  5(3P22.2) WILD-TYPE      0     12     25      0
D8V6, multiclass
        clus
vv       DEL PEAK  5(3P22.2) MUTATED DEL PEAK  5(3P22.2) WILD-TYPE
  CLUS_1                          17                             0
  CLUS_2                           1                            12
  CLUS_3                           3                            25
  CLUS_4                          22                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.2) MUTATED       29      4      9
  DEL PEAK  5(3P22.2) WILD-TYPE      3     24      5
D8V7, multiclass
        clus
vv       DEL PEAK  5(3P22.2) MUTATED DEL PEAK  5(3P22.2) WILD-TYPE
  CLUS_1                          29                             3
  CLUS_2                           4                            24
  CLUS_3                           9                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P22.2) MUTATED        5      7      4      1     15     10
  DEL PEAK  5(3P22.2) WILD-TYPE      0      5     12     15      0      0
D8V8, multiclass
        clus
vv       DEL PEAK  5(3P22.2) MUTATED DEL PEAK  5(3P22.2) WILD-TYPE
  CLUS_1                           5                             0
  CLUS_2                           7                             5
  CLUS_3                           4                            12
  CLUS_4                           1                            15
  CLUS_5                          15                             0
  CLUS_6                          10                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = DEL PEAK  6(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       22      2     20
  DEL PEAK  6(3P14.2) WILD-TYPE      0     34      2
D9V1, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          22                             0
  CLUS_2                           2                            34
  CLUS_3                          20                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       33     10      1
  DEL PEAK  6(3P14.2) WILD-TYPE      0      8     28
D9V2, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          33                             0
  CLUS_2                          10                             8
  CLUS_3                           1                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       30     10      4
  DEL PEAK  6(3P14.2) WILD-TYPE      0      5     31
D9V3, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          30                             0
  CLUS_2                          10                             5
  CLUS_3                           4                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       29      2     13
  DEL PEAK  6(3P14.2) WILD-TYPE      0     31      5
D9V4, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          29                             0
  CLUS_2                           2                            31
  CLUS_3                          13                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       30     12      2
  DEL PEAK  6(3P14.2) WILD-TYPE      4      5     27
D9V5, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          30                             4
  CLUS_2                          12                             5
  CLUS_3                           2                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P14.2) MUTATED       17      2      3     22
  DEL PEAK  6(3P14.2) WILD-TYPE      0     11     25      0
D9V6, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          17                             0
  CLUS_2                           2                            11
  CLUS_3                           3                            25
  CLUS_4                          22                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       30      4      9
  DEL PEAK  6(3P14.2) WILD-TYPE      2     24      5
D9V7, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          30                             2
  CLUS_2                           4                            24
  CLUS_3                           9                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P14.2) MUTATED        5      8      4      1     15     10
  DEL PEAK  6(3P14.2) WILD-TYPE      0      4     12     15      0      0
D9V8, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           5                             0
  CLUS_2                           8                             4
  CLUS_3                           4                            12
  CLUS_4                           1                            15
  CLUS_5                          15                             0
  CLUS_6                          10                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = DEL PEAK  7(3Q24) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q24) MUTATED       22      2     20
  DEL PEAK  7(3Q24) WILD-TYPE      0     34      2
D10V1, multiclass
        clus
vv       DEL PEAK  7(3Q24) MUTATED DEL PEAK  7(3Q24) WILD-TYPE
  CLUS_1                        22                           0
  CLUS_2                         2                          34
  CLUS_3                        20                           2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q24) MUTATED       33     10      1
  DEL PEAK  7(3Q24) WILD-TYPE      0      8     28
D10V2, multiclass
        clus
vv       DEL PEAK  7(3Q24) MUTATED DEL PEAK  7(3Q24) WILD-TYPE
  CLUS_1                        33                           0
  CLUS_2                        10                           8
  CLUS_3                         1                          28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q24) MUTATED       30     10      4
  DEL PEAK  7(3Q24) WILD-TYPE      0      5     31
D10V3, multiclass
        clus
vv       DEL PEAK  7(3Q24) MUTATED DEL PEAK  7(3Q24) WILD-TYPE
  CLUS_1                        30                           0
  CLUS_2                        10                           5
  CLUS_3                         4                          31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q24) MUTATED       29      2     13
  DEL PEAK  7(3Q24) WILD-TYPE      0     31      5
D10V4, multiclass
        clus
vv       DEL PEAK  7(3Q24) MUTATED DEL PEAK  7(3Q24) WILD-TYPE
  CLUS_1                        29                           0
  CLUS_2                         2                          31
  CLUS_3                        13                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q24) MUTATED       30     12      2
  DEL PEAK  7(3Q24) WILD-TYPE      4      5     27
D10V5, multiclass
        clus
vv       DEL PEAK  7(3Q24) MUTATED DEL PEAK  7(3Q24) WILD-TYPE
  CLUS_1                        30                           4
  CLUS_2                        12                           5
  CLUS_3                         2                          27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q24) MUTATED       17      2      3     22
  DEL PEAK  7(3Q24) WILD-TYPE      0     11     25      0
D10V6, multiclass
        clus
vv       DEL PEAK  7(3Q24) MUTATED DEL PEAK  7(3Q24) WILD-TYPE
  CLUS_1                        17                           0
  CLUS_2                         2                          11
  CLUS_3                         3                          25
  CLUS_4                        22                           0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q24) MUTATED       30      4      9
  DEL PEAK  7(3Q24) WILD-TYPE      2     24      5
D10V7, multiclass
        clus
vv       DEL PEAK  7(3Q24) MUTATED DEL PEAK  7(3Q24) WILD-TYPE
  CLUS_1                        30                           2
  CLUS_2                         4                          24
  CLUS_3                         9                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q24) MUTATED        5      8      4      1     15     10
  DEL PEAK  7(3Q24) WILD-TYPE      0      4     12     15      0      0
D10V8, multiclass
        clus
vv       DEL PEAK  7(3Q24) MUTATED DEL PEAK  7(3Q24) WILD-TYPE
  CLUS_1                         5                           0
  CLUS_2                         8                           4
  CLUS_3                         4                          12
  CLUS_4                         1                          15
  CLUS_5                        15                           0
  CLUS_6                        10                           0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = DEL PEAK  8(3Q29) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED       22      2     20
  DEL PEAK  8(3Q29) WILD-TYPE      0     34      2
D11V1, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        22                           0
  CLUS_2                         2                          34
  CLUS_3                        20                           2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED       33     10      1
  DEL PEAK  8(3Q29) WILD-TYPE      0      8     28
D11V2, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        33                           0
  CLUS_2                        10                           8
  CLUS_3                         1                          28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED       30     10      4
  DEL PEAK  8(3Q29) WILD-TYPE      0      5     31
D11V3, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        30                           0
  CLUS_2                        10                           5
  CLUS_3                         4                          31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED       29      2     13
  DEL PEAK  8(3Q29) WILD-TYPE      0     31      5
D11V4, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        29                           0
  CLUS_2                         2                          31
  CLUS_3                        13                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED       30     12      2
  DEL PEAK  8(3Q29) WILD-TYPE      4      5     27
D11V5, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        30                           4
  CLUS_2                        12                           5
  CLUS_3                         2                          27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q29) MUTATED       17      2      3     22
  DEL PEAK  8(3Q29) WILD-TYPE      0     11     25      0
D11V6, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        17                           0
  CLUS_2                         2                          11
  CLUS_3                         3                          25
  CLUS_4                        22                           0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED       30      4      9
  DEL PEAK  8(3Q29) WILD-TYPE      2     24      5
D11V7, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        30                           2
  CLUS_2                         4                          24
  CLUS_3                         9                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3Q29) MUTATED        5      8      4      1     15     10
  DEL PEAK  8(3Q29) WILD-TYPE      0      4     12     15      0      0
D11V8, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         5                           0
  CLUS_2                         8                           4
  CLUS_3                         4                          12
  CLUS_4                         1                          15
  CLUS_5                        15                           0
  CLUS_6                        10                           0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = DEL PEAK  9(5Q23.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q23.1) MUTATED        0      2      2
  DEL PEAK  9(5Q23.1) WILD-TYPE     22     34     20
D12V1, multiclass
        clus
vv       DEL PEAK  9(5Q23.1) MUTATED DEL PEAK  9(5Q23.1) WILD-TYPE
  CLUS_1                           0                            22
  CLUS_2                           2                            34
  CLUS_3                           2                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q23.1) MUTATED        0      2      2
  DEL PEAK  9(5Q23.1) WILD-TYPE     33     16     27
D12V2, multiclass
        clus
vv       DEL PEAK  9(5Q23.1) MUTATED DEL PEAK  9(5Q23.1) WILD-TYPE
  CLUS_1                           0                            33
  CLUS_2                           2                            16
  CLUS_3                           2                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q23.1) MUTATED        0      2      2
  DEL PEAK  9(5Q23.1) WILD-TYPE     30     13     33
D12V3, multiclass
        clus
vv       DEL PEAK  9(5Q23.1) MUTATED DEL PEAK  9(5Q23.1) WILD-TYPE
  CLUS_1                           0                            30
  CLUS_2                           2                            13
  CLUS_3                           2                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q23.1) MUTATED        0      2      2
  DEL PEAK  9(5Q23.1) WILD-TYPE     29     31     16
D12V4, multiclass
        clus
vv       DEL PEAK  9(5Q23.1) MUTATED DEL PEAK  9(5Q23.1) WILD-TYPE
  CLUS_1                           0                            29
  CLUS_2                           2                            31
  CLUS_3                           2                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q23.1) MUTATED        1      0      3
  DEL PEAK  9(5Q23.1) WILD-TYPE     33     17     26
D12V5, multiclass
        clus
vv       DEL PEAK  9(5Q23.1) MUTATED DEL PEAK  9(5Q23.1) WILD-TYPE
  CLUS_1                           1                            33
  CLUS_2                           0                            17
  CLUS_3                           3                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q23.1) MUTATED        0      1      2      1
  DEL PEAK  9(5Q23.1) WILD-TYPE     17     12     26     21
D12V6, multiclass
        clus
vv       DEL PEAK  9(5Q23.1) MUTATED DEL PEAK  9(5Q23.1) WILD-TYPE
  CLUS_1                           0                            17
  CLUS_2                           1                            12
  CLUS_3                           2                            26
  CLUS_4                           1                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q23.1) MUTATED        0      2      1
  DEL PEAK  9(5Q23.1) WILD-TYPE     32     26     13
D12V7, multiclass
        clus
vv       DEL PEAK  9(5Q23.1) MUTATED DEL PEAK  9(5Q23.1) WILD-TYPE
  CLUS_1                           0                            32
  CLUS_2                           2                            26
  CLUS_3                           1                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(5Q23.1) MUTATED        0      1      1      0      1      0
  DEL PEAK  9(5Q23.1) WILD-TYPE      5     11     15     16     14     10
D12V8, multiclass
        clus
vv       DEL PEAK  9(5Q23.1) MUTATED DEL PEAK  9(5Q23.1) WILD-TYPE
  CLUS_1                           0                             5
  CLUS_2                           1                            11
  CLUS_3                           1                            15
  CLUS_4                           0                            16
  CLUS_5                           1                            14
  CLUS_6                           0                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = DEL PEAK 10(6Q22.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.31) MUTATED       13     10      1
  DEL PEAK 10(6Q22.31) WILD-TYPE      9     26     21
D13V1, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                           13                              9
  CLUS_2                           10                             26
  CLUS_3                            1                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.31) MUTATED       14      2      8
  DEL PEAK 10(6Q22.31) WILD-TYPE     19     16     21
D13V2, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                           14                             19
  CLUS_2                            2                             16
  CLUS_3                            8                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.31) MUTATED       12      2     10
  DEL PEAK 10(6Q22.31) WILD-TYPE     18     13     25
D13V3, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                           12                             18
  CLUS_2                            2                             13
  CLUS_3                           10                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.31) MUTATED       13     10      1
  DEL PEAK 10(6Q22.31) WILD-TYPE     16     23     17
D13V4, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                           13                             16
  CLUS_2                           10                             23
  CLUS_3                            1                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.31) MUTATED       13      3      8
  DEL PEAK 10(6Q22.31) WILD-TYPE     21     14     21
D13V5, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                           13                             21
  CLUS_2                            3                             14
  CLUS_3                            8                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q22.31) MUTATED        6      3      8      7
  DEL PEAK 10(6Q22.31) WILD-TYPE     11     10     20     15
D13V6, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                            6                             11
  CLUS_2                            3                             10
  CLUS_3                            8                             20
  CLUS_4                            7                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.31) MUTATED       14      6      4
  DEL PEAK 10(6Q22.31) WILD-TYPE     18     22     10
D13V7, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                           14                             18
  CLUS_2                            6                             22
  CLUS_3                            4                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6Q22.31) MUTATED        3      2      2      7      2      8
  DEL PEAK 10(6Q22.31) WILD-TYPE      2     10     14      9     13      2
D13V8, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            2                             10
  CLUS_3                            2                             14
  CLUS_4                            7                              9
  CLUS_5                            2                             13
  CLUS_6                            8                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = DEL PEAK 11(6Q27) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q27) MUTATED       13      9      2
  DEL PEAK 11(6Q27) WILD-TYPE      9     27     20
D14V1, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        13                           9
  CLUS_2                         9                          27
  CLUS_3                         2                          20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q27) MUTATED       15      2      7
  DEL PEAK 11(6Q27) WILD-TYPE     18     16     22
D14V2, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        15                          18
  CLUS_2                         2                          16
  CLUS_3                         7                          22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q27) MUTATED       13      2      9
  DEL PEAK 11(6Q27) WILD-TYPE     17     13     26
D14V3, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        13                          17
  CLUS_2                         2                          13
  CLUS_3                         9                          26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q27) MUTATED       14      9      1
  DEL PEAK 11(6Q27) WILD-TYPE     15     24     17
D14V4, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        14                          15
  CLUS_2                         9                          24
  CLUS_3                         1                          17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q27) MUTATED       14      3      7
  DEL PEAK 11(6Q27) WILD-TYPE     20     14     22
D14V5, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        14                          20
  CLUS_2                         3                          14
  CLUS_3                         7                          22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q27) MUTATED        6      3      7      8
  DEL PEAK 11(6Q27) WILD-TYPE     11     10     21     14
D14V6, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                         6                          11
  CLUS_2                         3                          10
  CLUS_3                         7                          21
  CLUS_4                         8                          14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q27) MUTATED       15      5      4
  DEL PEAK 11(6Q27) WILD-TYPE     17     23     10
D14V7, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        15                          17
  CLUS_2                         5                          23
  CLUS_3                         4                          10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q27) MUTATED        3      2      2      6      3      8
  DEL PEAK 11(6Q27) WILD-TYPE      2     10     14     10     12      2
D14V8, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                         3                           2
  CLUS_2                         2                          10
  CLUS_3                         2                          14
  CLUS_4                         6                          10
  CLUS_5                         3                          12
  CLUS_6                         8                           2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = DEL PEAK 12(8P11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P11.22) MUTATED       16      1      2
  DEL PEAK 12(8P11.22) WILD-TYPE      6     35     20
D15V1, multiclass
        clus
vv       DEL PEAK 12(8P11.22) MUTATED DEL PEAK 12(8P11.22) WILD-TYPE
  CLUS_1                           16                              6
  CLUS_2                            1                             35
  CLUS_3                            2                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P11.22) MUTATED       16      2      1
  DEL PEAK 12(8P11.22) WILD-TYPE     17     16     28
D15V2, multiclass
        clus
vv       DEL PEAK 12(8P11.22) MUTATED DEL PEAK 12(8P11.22) WILD-TYPE
  CLUS_1                           16                             17
  CLUS_2                            2                             16
  CLUS_3                            1                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P11.22) MUTATED       15      3      1
  DEL PEAK 12(8P11.22) WILD-TYPE     15     12     34
D15V3, multiclass
        clus
vv       DEL PEAK 12(8P11.22) MUTATED DEL PEAK 12(8P11.22) WILD-TYPE
  CLUS_1                           15                             15
  CLUS_2                            3                             12
  CLUS_3                            1                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P11.22) MUTATED       16      1      2
  DEL PEAK 12(8P11.22) WILD-TYPE     13     32     16
D15V4, multiclass
        clus
vv       DEL PEAK 12(8P11.22) MUTATED DEL PEAK 12(8P11.22) WILD-TYPE
  CLUS_1                           16                             13
  CLUS_2                            1                             32
  CLUS_3                            2                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P11.22) MUTATED       15      4      0
  DEL PEAK 12(8P11.22) WILD-TYPE     19     13     29
D15V5, multiclass
        clus
vv       DEL PEAK 12(8P11.22) MUTATED DEL PEAK 12(8P11.22) WILD-TYPE
  CLUS_1                           15                             19
  CLUS_2                            4                             13
  CLUS_3                            0                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P11.22) MUTATED        7      1      0     11
  DEL PEAK 12(8P11.22) WILD-TYPE     10     12     28     11
D15V6, multiclass
        clus
vv       DEL PEAK 12(8P11.22) MUTATED DEL PEAK 12(8P11.22) WILD-TYPE
  CLUS_1                            7                             10
  CLUS_2                            1                             12
  CLUS_3                            0                             28
  CLUS_4                           11                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P11.22) MUTATED       16      0      3
  DEL PEAK 12(8P11.22) WILD-TYPE     16     28     11
D15V7, multiclass
        clus
vv       DEL PEAK 12(8P11.22) MUTATED DEL PEAK 12(8P11.22) WILD-TYPE
  CLUS_1                           16                             16
  CLUS_2                            0                             28
  CLUS_3                            3                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(8P11.22) MUTATED        3      4      0      0      7      5
  DEL PEAK 12(8P11.22) WILD-TYPE      2      8     16     16      8      5
D15V8, multiclass
        clus
vv       DEL PEAK 12(8P11.22) MUTATED DEL PEAK 12(8P11.22) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            4                              8
  CLUS_3                            0                             16
  CLUS_4                            0                             16
  CLUS_5                            7                              8
  CLUS_6                            5                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK 15(11Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q24.3) MUTATED        0      6      1
  DEL PEAK 15(11Q24.3) WILD-TYPE     22     30     21
D16V1, multiclass
        clus
vv       DEL PEAK 15(11Q24.3) MUTATED DEL PEAK 15(11Q24.3) WILD-TYPE
  CLUS_1                            0                             22
  CLUS_2                            6                             30
  CLUS_3                            1                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q24.3) MUTATED        1      0      6
  DEL PEAK 15(11Q24.3) WILD-TYPE     32     18     23
D16V2, multiclass
        clus
vv       DEL PEAK 15(11Q24.3) MUTATED DEL PEAK 15(11Q24.3) WILD-TYPE
  CLUS_1                            1                             32
  CLUS_2                            0                             18
  CLUS_3                            6                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q24.3) MUTATED        0      2      5
  DEL PEAK 15(11Q24.3) WILD-TYPE     30     13     30
D16V3, multiclass
        clus
vv       DEL PEAK 15(11Q24.3) MUTATED DEL PEAK 15(11Q24.3) WILD-TYPE
  CLUS_1                            0                             30
  CLUS_2                            2                             13
  CLUS_3                            5                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q24.3) MUTATED        0      5      2
  DEL PEAK 15(11Q24.3) WILD-TYPE     29     28     16
D16V4, multiclass
        clus
vv       DEL PEAK 15(11Q24.3) MUTATED DEL PEAK 15(11Q24.3) WILD-TYPE
  CLUS_1                            0                             29
  CLUS_2                            5                             28
  CLUS_3                            2                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q24.3) MUTATED        1      0      6
  DEL PEAK 15(11Q24.3) WILD-TYPE     33     17     23
D16V5, multiclass
        clus
vv       DEL PEAK 15(11Q24.3) MUTATED DEL PEAK 15(11Q24.3) WILD-TYPE
  CLUS_1                            1                             33
  CLUS_2                            0                             17
  CLUS_3                            6                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11Q24.3) MUTATED        1      1      5      0
  DEL PEAK 15(11Q24.3) WILD-TYPE     16     12     23     22
D16V6, multiclass
        clus
vv       DEL PEAK 15(11Q24.3) MUTATED DEL PEAK 15(11Q24.3) WILD-TYPE
  CLUS_1                            1                             16
  CLUS_2                            1                             12
  CLUS_3                            5                             23
  CLUS_4                            0                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q24.3) MUTATED        2      2      1
  DEL PEAK 15(11Q24.3) WILD-TYPE     30     26     13
D16V7, multiclass
        clus
vv       DEL PEAK 15(11Q24.3) MUTATED DEL PEAK 15(11Q24.3) WILD-TYPE
  CLUS_1                            2                             30
  CLUS_2                            2                             26
  CLUS_3                            1                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(11Q24.3) MUTATED        0      2      1      2      0      0
  DEL PEAK 15(11Q24.3) WILD-TYPE      5     10     15     14     15     10
D16V8, multiclass
        clus
vv       DEL PEAK 15(11Q24.3) MUTATED DEL PEAK 15(11Q24.3) WILD-TYPE
  CLUS_1                            0                              5
  CLUS_2                            2                             10
  CLUS_3                            1                             15
  CLUS_4                            2                             14
  CLUS_5                            0                             15
  CLUS_6                            0                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK 16(16Q12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(16Q12.1) MUTATED        9      5      2
  DEL PEAK 16(16Q12.1) WILD-TYPE     13     31     20
D17V1, multiclass
        clus
vv       DEL PEAK 16(16Q12.1) MUTATED DEL PEAK 16(16Q12.1) WILD-TYPE
  CLUS_1                            9                             13
  CLUS_2                            5                             31
  CLUS_3                            2                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(16Q12.1) MUTATED       10      3      3
  DEL PEAK 16(16Q12.1) WILD-TYPE     23     15     26
D17V2, multiclass
        clus
vv       DEL PEAK 16(16Q12.1) MUTATED DEL PEAK 16(16Q12.1) WILD-TYPE
  CLUS_1                           10                             23
  CLUS_2                            3                             15
  CLUS_3                            3                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(16Q12.1) MUTATED       10      2      4
  DEL PEAK 16(16Q12.1) WILD-TYPE     20     13     31
D17V3, multiclass
        clus
vv       DEL PEAK 16(16Q12.1) MUTATED DEL PEAK 16(16Q12.1) WILD-TYPE
  CLUS_1                           10                             20
  CLUS_2                            2                             13
  CLUS_3                            4                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(16Q12.1) MUTATED       11      4      1
  DEL PEAK 16(16Q12.1) WILD-TYPE     18     29     17
D17V4, multiclass
        clus
vv       DEL PEAK 16(16Q12.1) MUTATED DEL PEAK 16(16Q12.1) WILD-TYPE
  CLUS_1                           11                             18
  CLUS_2                            4                             29
  CLUS_3                            1                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(16Q12.1) MUTATED        8      3      5
  DEL PEAK 16(16Q12.1) WILD-TYPE     26     14     24
D17V5, multiclass
        clus
vv       DEL PEAK 16(16Q12.1) MUTATED DEL PEAK 16(16Q12.1) WILD-TYPE
  CLUS_1                            8                             26
  CLUS_2                            3                             14
  CLUS_3                            5                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(16Q12.1) MUTATED        4      0      5      7
  DEL PEAK 16(16Q12.1) WILD-TYPE     13     13     23     15
D17V6, multiclass
        clus
vv       DEL PEAK 16(16Q12.1) MUTATED DEL PEAK 16(16Q12.1) WILD-TYPE
  CLUS_1                            4                             13
  CLUS_2                            0                             13
  CLUS_3                            5                             23
  CLUS_4                            7                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(16Q12.1) MUTATED       10      3      3
  DEL PEAK 16(16Q12.1) WILD-TYPE     22     25     11
D17V7, multiclass
        clus
vv       DEL PEAK 16(16Q12.1) MUTATED DEL PEAK 16(16Q12.1) WILD-TYPE
  CLUS_1                           10                             22
  CLUS_2                            3                             25
  CLUS_3                            3                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(16Q12.1) MUTATED        3      2      0      4      4      3
  DEL PEAK 16(16Q12.1) WILD-TYPE      2     10     16     12     11      7
D17V8, multiclass
        clus
vv       DEL PEAK 16(16Q12.1) MUTATED DEL PEAK 16(16Q12.1) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            2                             10
  CLUS_3                            0                             16
  CLUS_4                            4                             12
  CLUS_5                            4                             11
  CLUS_6                            3                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK 17(16Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(16Q23.3) MUTATED       10      5      2
  DEL PEAK 17(16Q23.3) WILD-TYPE     12     31     20
D18V1, multiclass
        clus
vv       DEL PEAK 17(16Q23.3) MUTATED DEL PEAK 17(16Q23.3) WILD-TYPE
  CLUS_1                           10                             12
  CLUS_2                            5                             31
  CLUS_3                            2                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(16Q23.3) MUTATED       11      3      3
  DEL PEAK 17(16Q23.3) WILD-TYPE     22     15     26
D18V2, multiclass
        clus
vv       DEL PEAK 17(16Q23.3) MUTATED DEL PEAK 17(16Q23.3) WILD-TYPE
  CLUS_1                           11                             22
  CLUS_2                            3                             15
  CLUS_3                            3                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(16Q23.3) MUTATED       11      2      4
  DEL PEAK 17(16Q23.3) WILD-TYPE     19     13     31
D18V3, multiclass
        clus
vv       DEL PEAK 17(16Q23.3) MUTATED DEL PEAK 17(16Q23.3) WILD-TYPE
  CLUS_1                           11                             19
  CLUS_2                            2                             13
  CLUS_3                            4                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(16Q23.3) MUTATED       12      4      1
  DEL PEAK 17(16Q23.3) WILD-TYPE     17     29     17
D18V4, multiclass
        clus
vv       DEL PEAK 17(16Q23.3) MUTATED DEL PEAK 17(16Q23.3) WILD-TYPE
  CLUS_1                           12                             17
  CLUS_2                            4                             29
  CLUS_3                            1                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(16Q23.3) MUTATED        9      3      5
  DEL PEAK 17(16Q23.3) WILD-TYPE     25     14     24
D18V5, multiclass
        clus
vv       DEL PEAK 17(16Q23.3) MUTATED DEL PEAK 17(16Q23.3) WILD-TYPE
  CLUS_1                            9                             25
  CLUS_2                            3                             14
  CLUS_3                            5                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(16Q23.3) MUTATED        5      0      5      7
  DEL PEAK 17(16Q23.3) WILD-TYPE     12     13     23     15
D18V6, multiclass
        clus
vv       DEL PEAK 17(16Q23.3) MUTATED DEL PEAK 17(16Q23.3) WILD-TYPE
  CLUS_1                            5                             12
  CLUS_2                            0                             13
  CLUS_3                            5                             23
  CLUS_4                            7                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(16Q23.3) MUTATED       11      3      3
  DEL PEAK 17(16Q23.3) WILD-TYPE     21     25     11
D18V7, multiclass
        clus
vv       DEL PEAK 17(16Q23.3) MUTATED DEL PEAK 17(16Q23.3) WILD-TYPE
  CLUS_1                           11                             21
  CLUS_2                            3                             25
  CLUS_3                            3                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(16Q23.3) MUTATED        3      2      0      4      4      4
  DEL PEAK 17(16Q23.3) WILD-TYPE      2     10     16     12     11      6
D18V8, multiclass
        clus
vv       DEL PEAK 17(16Q23.3) MUTATED DEL PEAK 17(16Q23.3) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            2                             10
  CLUS_3                            0                             16
  CLUS_4                            4                             12
  CLUS_5                            4                             11
  CLUS_6                            4                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK 18(16Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(16Q24.3) MUTATED       11      4      2
  DEL PEAK 18(16Q24.3) WILD-TYPE     11     32     20
D19V1, multiclass
        clus
vv       DEL PEAK 18(16Q24.3) MUTATED DEL PEAK 18(16Q24.3) WILD-TYPE
  CLUS_1                           11                             11
  CLUS_2                            4                             32
  CLUS_3                            2                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(16Q24.3) MUTATED       12      3      2
  DEL PEAK 18(16Q24.3) WILD-TYPE     21     15     27
D19V2, multiclass
        clus
vv       DEL PEAK 18(16Q24.3) MUTATED DEL PEAK 18(16Q24.3) WILD-TYPE
  CLUS_1                           12                             21
  CLUS_2                            3                             15
  CLUS_3                            2                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(16Q24.3) MUTATED       11      2      4
  DEL PEAK 18(16Q24.3) WILD-TYPE     19     13     31
D19V3, multiclass
        clus
vv       DEL PEAK 18(16Q24.3) MUTATED DEL PEAK 18(16Q24.3) WILD-TYPE
  CLUS_1                           11                             19
  CLUS_2                            2                             13
  CLUS_3                            4                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(16Q24.3) MUTATED       12      4      1
  DEL PEAK 18(16Q24.3) WILD-TYPE     17     29     17
D19V4, multiclass
        clus
vv       DEL PEAK 18(16Q24.3) MUTATED DEL PEAK 18(16Q24.3) WILD-TYPE
  CLUS_1                           12                             17
  CLUS_2                            4                             29
  CLUS_3                            1                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(16Q24.3) MUTATED       10      3      4
  DEL PEAK 18(16Q24.3) WILD-TYPE     24     14     25
D19V5, multiclass
        clus
vv       DEL PEAK 18(16Q24.3) MUTATED DEL PEAK 18(16Q24.3) WILD-TYPE
  CLUS_1                           10                             24
  CLUS_2                            3                             14
  CLUS_3                            4                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(16Q24.3) MUTATED        6      0      4      7
  DEL PEAK 18(16Q24.3) WILD-TYPE     11     13     24     15
D19V6, multiclass
        clus
vv       DEL PEAK 18(16Q24.3) MUTATED DEL PEAK 18(16Q24.3) WILD-TYPE
  CLUS_1                            6                             11
  CLUS_2                            0                             13
  CLUS_3                            4                             24
  CLUS_4                            7                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(16Q24.3) MUTATED       11      3      3
  DEL PEAK 18(16Q24.3) WILD-TYPE     21     25     11
D19V7, multiclass
        clus
vv       DEL PEAK 18(16Q24.3) MUTATED DEL PEAK 18(16Q24.3) WILD-TYPE
  CLUS_1                           11                             21
  CLUS_2                            3                             25
  CLUS_3                            3                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(16Q24.3) MUTATED        3      1      0      4      4      5
  DEL PEAK 18(16Q24.3) WILD-TYPE      2     11     16     12     11      5
D19V8, multiclass
        clus
vv       DEL PEAK 18(16Q24.3) MUTATED DEL PEAK 18(16Q24.3) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            1                             11
  CLUS_3                            0                             16
  CLUS_4                            4                             12
  CLUS_5                            4                             11
  CLUS_6                            5                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK 19(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(17Q12) MUTATED        0      3      0
  DEL PEAK 19(17Q12) WILD-TYPE     22     33     22
D20V1, multiclass
        clus
vv       DEL PEAK 19(17Q12) MUTATED DEL PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          0                           22
  CLUS_2                          3                           33
  CLUS_3                          0                           22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(17Q12) MUTATED        0      0      3
  DEL PEAK 19(17Q12) WILD-TYPE     33     18     26
D20V2, multiclass
        clus
vv       DEL PEAK 19(17Q12) MUTATED DEL PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          0                           33
  CLUS_2                          0                           18
  CLUS_3                          3                           26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(17Q12) MUTATED        0      2      1
  DEL PEAK 19(17Q12) WILD-TYPE     30     13     34
D20V3, multiclass
        clus
vv       DEL PEAK 19(17Q12) MUTATED DEL PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          0                           30
  CLUS_2                          2                           13
  CLUS_3                          1                           34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(17Q12) MUTATED        0      1      2
  DEL PEAK 19(17Q12) WILD-TYPE     29     32     16
D20V4, multiclass
        clus
vv       DEL PEAK 19(17Q12) MUTATED DEL PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          0                           29
  CLUS_2                          1                           32
  CLUS_3                          2                           16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(17Q12) MUTATED        1      0      2
  DEL PEAK 19(17Q12) WILD-TYPE     33     17     27
D20V5, multiclass
        clus
vv       DEL PEAK 19(17Q12) MUTATED DEL PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          1                           33
  CLUS_2                          0                           17
  CLUS_3                          2                           27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(17Q12) MUTATED        0      1      2      0
  DEL PEAK 19(17Q12) WILD-TYPE     17     12     26     22
D20V6, multiclass
        clus
vv       DEL PEAK 19(17Q12) MUTATED DEL PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          0                           17
  CLUS_2                          1                           12
  CLUS_3                          2                           26
  CLUS_4                          0                           22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(17Q12) MUTATED        1      2      0
  DEL PEAK 19(17Q12) WILD-TYPE     31     26     14
D20V7, multiclass
        clus
vv       DEL PEAK 19(17Q12) MUTATED DEL PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          1                           31
  CLUS_2                          2                           26
  CLUS_3                          0                           14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(17Q12) MUTATED        0      1      1      1      0      0
  DEL PEAK 19(17Q12) WILD-TYPE      5     11     15     15     15     10
D20V8, multiclass
        clus
vv       DEL PEAK 19(17Q12) MUTATED DEL PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          0                            5
  CLUS_2                          1                           11
  CLUS_3                          1                           15
  CLUS_4                          1                           15
  CLUS_5                          0                           15
  CLUS_6                          0                           10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
