This pipeline computes the correlation between significant copy number variation (cnv focal) genes and selected clinical features.
Testing the association between copy number variation 39 focal events and 14 clinical features across 881 patients, 255 significant findings detected with Q value < 0.25.
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amp_1q32.1 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'KARNOFSKY_PERFORMANCE_SCORE', 'HISTOLOGICAL_TYPE', and 'YEAR_OF_TOBACCO_SMOKING_ONSET'.
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amp_2q32.1 cnv correlated to 'PATHOLOGY_N_STAGE' and 'HISTOLOGICAL_TYPE'.
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amp_3q26.32 cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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amp_5q35.1 cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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amp_7q31.2 cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'GENDER', 'RADIATION_THERAPY', 'HISTOLOGICAL_TYPE', and 'YEAR_OF_TOBACCO_SMOKING_ONSET'.
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amp_8q24.22 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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amp_10p14 cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', and 'PATHOLOGY_N_STAGE'.
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amp_17q25.2 cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'GENDER', 'HISTOLOGICAL_TYPE', 'YEAR_OF_TOBACCO_SMOKING_ONSET', and 'RACE'.
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amp_19p13.2 cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_M_STAGE', 'RADIATION_THERAPY', and 'HISTOLOGICAL_TYPE'.
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amp_xp22.2 cnv correlated to 'PATHOLOGIC_STAGE', 'GENDER', 'HISTOLOGICAL_TYPE', and 'YEAR_OF_TOBACCO_SMOKING_ONSET'.
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amp_xp11.4 cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'GENDER', 'HISTOLOGICAL_TYPE', and 'YEAR_OF_TOBACCO_SMOKING_ONSET'.
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amp_xq11.2 cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'GENDER', 'HISTOLOGICAL_TYPE', and 'YEAR_OF_TOBACCO_SMOKING_ONSET'.
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amp_xq28 cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'GENDER', 'KARNOFSKY_PERFORMANCE_SCORE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_1p36.31 cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'KARNOFSKY_PERFORMANCE_SCORE', and 'HISTOLOGICAL_TYPE'.
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del_1p31.1 cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'ETHNICITY'.
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del_1q43 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', and 'HISTOLOGICAL_TYPE'.
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del_2q37.3 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_M_STAGE', 'KARNOFSKY_PERFORMANCE_SCORE', and 'HISTOLOGICAL_TYPE'.
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del_3p26.3 cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'GENDER', 'KARNOFSKY_PERFORMANCE_SCORE', 'HISTOLOGICAL_TYPE', 'YEAR_OF_TOBACCO_SMOKING_ONSET', and 'RACE'.
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del_3p21.2 cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_M_STAGE', 'GENDER', 'KARNOFSKY_PERFORMANCE_SCORE', 'HISTOLOGICAL_TYPE', 'YEAR_OF_TOBACCO_SMOKING_ONSET', and 'RACE'.
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del_3p14.1 cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', 'YEAR_OF_TOBACCO_SMOKING_ONSET', and 'RACE'.
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del_3p12.2 cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', 'YEAR_OF_TOBACCO_SMOKING_ONSET', and 'RACE'.
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del_4q34.3 cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_5p15.33 cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'KARNOFSKY_PERFORMANCE_SCORE', and 'HISTOLOGICAL_TYPE'.
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del_6q22.31 cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'NUMBER_PACK_YEARS_SMOKED', and 'RACE'.
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del_6q26 cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'NUMBER_PACK_YEARS_SMOKED', and 'RACE'.
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del_6q26 cnv correlated to 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'NUMBER_PACK_YEARS_SMOKED', and 'RACE'.
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del_8p23.2 cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_9p23 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'KARNOFSKY_PERFORMANCE_SCORE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_9p21.3 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'KARNOFSKY_PERFORMANCE_SCORE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_10q23.31 cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'HISTOLOGICAL_TYPE', 'NUMBER_PACK_YEARS_SMOKED', and 'RACE'.
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del_11q21 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'KARNOFSKY_PERFORMANCE_SCORE', and 'HISTOLOGICAL_TYPE'.
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del_11q23.1 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'KARNOFSKY_PERFORMANCE_SCORE', and 'HISTOLOGICAL_TYPE'.
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del_13q12.13 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'GENDER', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_13q14.2 cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'GENDER', 'HISTOLOGICAL_TYPE', and 'RACE'.
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del_14q31.1 cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'RADIATION_THERAPY', 'KARNOFSKY_PERFORMANCE_SCORE', 'HISTOLOGICAL_TYPE', 'YEAR_OF_TOBACCO_SMOKING_ONSET', and 'RACE'.
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del_16q23.3 cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', and 'PATHOLOGY_N_STAGE'.
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del_18q22.2 cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'RACE', and 'ETHNICITY'.
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del_19p13.3 cnv correlated to 'Time to Death', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'KARNOFSKY_PERFORMANCE_SCORE', and 'HISTOLOGICAL_TYPE'.
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del_xp22.2 cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGIC_STAGE', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', and 'HISTOLOGICAL_TYPE'.
Clinical Features |
Time to Death |
YEARS TO BIRTH |
PATHOLOGIC STAGE |
PATHOLOGY T STAGE |
PATHOLOGY N STAGE |
PATHOLOGY M STAGE |
GENDER |
RADIATION THERAPY |
KARNOFSKY PERFORMANCE SCORE |
HISTOLOGICAL TYPE |
NUMBER PACK YEARS SMOKED |
YEAR OF TOBACCO SMOKING ONSET |
RACE | ETHNICITY | ||
nCNV (%) | nWild-Type | logrank test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Wilcoxon-test | Fisher's exact test | Wilcoxon-test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | |
del 3p26 3 | 489 (56%) | 392 |
0.000307 (0.00158) |
0.685 (0.825) |
2e-05 (0.00015) |
2e-05 (0.00015) |
0.0131 (0.0425) |
0.105 (0.233) |
0.0518 (0.136) |
0.278 (0.462) |
0.0801 (0.194) |
1e-05 (8.4e-05) |
0.419 (0.605) |
0.0787 (0.191) |
1e-05 (8.4e-05) |
0.204 (0.373) |
del 14q31 1 | 279 (32%) | 602 |
8.11e-10 (8.86e-08) |
0.126 (0.267) |
1e-05 (8.4e-05) |
1e-05 (8.4e-05) |
0.00554 (0.0199) |
4.69e-05 (0.000301) |
0.591 (0.752) |
0.116 (0.249) |
0.000186 (0.00103) |
1e-05 (8.4e-05) |
0.359 (0.554) |
0.00978 (0.0328) |
0.0226 (0.0679) |
1 (1.00) |
del 3p21 2 | 503 (57%) | 378 |
7.07e-07 (5.51e-05) |
0.581 (0.743) |
1e-05 (8.4e-05) |
1e-05 (8.4e-05) |
0.13 (0.273) |
0.0035 (0.0133) |
0.112 (0.244) |
0.298 (0.489) |
0.0271 (0.0797) |
1e-05 (8.4e-05) |
0.274 (0.462) |
0.042 (0.114) |
1e-05 (8.4e-05) |
0.75 (0.875) |
del 9p23 | 198 (22%) | 683 |
3.98e-13 (1.09e-10) |
0.0277 (0.0809) |
1e-05 (8.4e-05) |
1e-05 (8.4e-05) |
0.0035 (0.0133) |
0.000214 (0.00114) |
0.347 (0.544) |
0.384 (0.569) |
0.000649 (0.00313) |
1e-05 (8.4e-05) |
0.649 (0.794) |
0.893 (0.983) |
0.0174 (0.0539) |
0.847 (0.956) |
del 9p21 3 | 208 (24%) | 673 |
3.33e-16 (1.82e-13) |
0.0382 (0.107) |
1e-05 (8.4e-05) |
1e-05 (8.4e-05) |
4e-05 (0.000263) |
5.47e-06 (8.4e-05) |
0.273 (0.462) |
0.395 (0.58) |
0.00153 (0.00659) |
1e-05 (8.4e-05) |
0.88 (0.975) |
0.923 (1.00) |
0.00624 (0.0221) |
1 (1.00) |
amp 1q32 1 | 82 (9%) | 799 |
4.64e-05 (0.000301) |
0.034 (0.0962) |
4e-05 (0.000263) |
6e-05 (0.00036) |
0.0261 (0.0769) |
0.137 (0.284) |
0.538 (0.721) |
1 (1.00) |
0.0515 (0.136) |
0.00297 (0.0118) |
0.282 (0.467) |
0.103 (0.23) |
0.123 (0.262) |
0.254 (0.443) |
amp 8q24 22 | 125 (14%) | 756 |
0.00103 (0.00474) |
0.034 (0.0962) |
1e-05 (8.4e-05) |
1e-05 (8.4e-05) |
0.0226 (0.0679) |
0.0102 (0.0336) |
0.539 (0.721) |
1 (1.00) |
0.225 (0.403) |
0.00128 (0.00568) |
0.152 (0.304) |
0.374 (0.561) |
0.0218 (0.0662) |
1 (1.00) |
amp 17q25 2 | 244 (28%) | 637 |
0.784 (0.903) |
0.0462 (0.124) |
0.00056 (0.00275) |
0.00273 (0.011) |
0.00015 (0.000836) |
0.214 (0.387) |
0.00078 (0.0037) |
1 (1.00) |
0.639 (0.787) |
1e-05 (8.4e-05) |
0.562 (0.738) |
0.108 (0.239) |
0.0176 (0.054) |
0.227 (0.404) |
del 11q21 | 61 (7%) | 820 |
0.000133 (0.00075) |
0.00548 (0.0199) |
9e-05 (0.000517) |
6e-05 (0.00036) |
2e-05 (0.00015) |
0.0983 (0.226) |
0.78 (0.9) |
1 (1.00) |
0.0973 (0.225) |
0.00308 (0.0121) |
0.452 (0.642) |
0.62 (0.779) |
0.398 (0.583) |
0.35 (0.545) |
del 11q23 1 | 71 (8%) | 810 |
0.000299 (0.00157) |
0.00335 (0.013) |
2e-05 (0.00015) |
2e-05 (0.00015) |
2e-05 (0.00015) |
0.111 (0.244) |
0.599 (0.758) |
0.245 (0.435) |
0.0989 (0.227) |
0.00461 (0.017) |
0.635 (0.785) |
0.646 (0.794) |
0.265 (0.456) |
0.241 (0.429) |
del 13q12 13 | 150 (17%) | 731 |
0.0125 (0.0409) |
0.000305 (0.00158) |
1e-05 (8.4e-05) |
1e-05 (8.4e-05) |
0.00389 (0.0146) |
0.179 (0.342) |
0.00765 (0.0264) |
1 (1.00) |
0.904 (0.993) |
1e-05 (8.4e-05) |
0.933 (1.00) |
0.6 (0.758) |
0.0848 (0.203) |
0.378 (0.564) |
del 13q14 2 | 149 (17%) | 732 |
0.0169 (0.0526) |
5.79e-05 (0.000359) |
1e-05 (8.4e-05) |
1e-05 (8.4e-05) |
0.03 (0.0868) |
0.131 (0.274) |
0.00734 (0.0255) |
1 (1.00) |
0.478 (0.668) |
1e-05 (8.4e-05) |
0.839 (0.952) |
0.542 (0.723) |
0.0871 (0.205) |
0.822 (0.937) |
amp 7q31 2 | 377 (43%) | 504 |
0.918 (1.00) |
0.258 (0.445) |
0.0155 (0.0488) |
0.83 (0.944) |
0.11 (0.243) |
0.00201 (0.00837) |
7.13e-06 (8.4e-05) |
0.102 (0.23) |
0.797 (0.917) |
1e-05 (8.4e-05) |
0.379 (0.564) |
0.00994 (0.0331) |
0.177 (0.34) |
0.199 (0.369) |
amp xq28 | 137 (16%) | 744 |
0.0923 (0.215) |
0.39 (0.575) |
0.0786 (0.191) |
0.067 (0.17) |
0.635 (0.785) |
0.465 (0.654) |
0.00769 (0.0264) |
1 (1.00) |
0.115 (0.249) |
1e-05 (8.4e-05) |
0.843 (0.954) |
0.341 (0.541) |
0.116 (0.249) |
0.284 (0.468) |
del 2q37 3 | 111 (13%) | 770 |
0.029 (0.0843) |
0.00326 (0.0127) |
1e-05 (8.4e-05) |
1e-05 (8.4e-05) |
0.514 (0.703) |
0.085 (0.203) |
0.518 (0.707) |
1 (1.00) |
0.0153 (0.0488) |
1e-05 (8.4e-05) |
0.49 (0.681) |
0.915 (1.00) |
0.456 (0.645) |
1 (1.00) |
del 4q34 3 | 113 (13%) | 768 |
1.3e-10 (1.77e-08) |
0.705 (0.839) |
1e-05 (8.4e-05) |
1e-05 (8.4e-05) |
0.00173 (0.00732) |
0.014 (0.0451) |
0.749 (0.875) |
1 (1.00) |
0.261 (0.45) |
0.0332 (0.095) |
0.348 (0.544) |
0.703 (0.839) |
0.0496 (0.132) |
0.478 (0.668) |
del 18q22 2 | 155 (18%) | 726 |
2.99e-08 (2.72e-06) |
0.624 (0.783) |
1e-05 (8.4e-05) |
1e-05 (8.4e-05) |
0.00397 (0.0148) |
0.00896 (0.0304) |
0.925 (1.00) |
1 (1.00) |
0.362 (0.555) |
0.354 (0.549) |
0.454 (0.643) |
0.152 (0.304) |
0.0557 (0.145) |
0.0901 (0.21) |
del 19p13 3 | 43 (5%) | 838 |
5.14e-12 (9.35e-10) |
0.411 (0.596) |
1e-05 (8.4e-05) |
1e-05 (8.4e-05) |
6e-05 (0.00036) |
0.069 (0.173) |
0.619 (0.779) |
1 (1.00) |
0.00553 (0.0199) |
0.00964 (0.0325) |
0.15 (0.303) |
0.312 (0.509) |
0.72 (0.853) |
|
amp 5q35 1 | 376 (43%) | 505 |
0.157 (0.308) |
0.173 (0.337) |
2e-05 (0.00015) |
0.00344 (0.0132) |
0.0382 (0.107) |
0.0159 (0.0498) |
0.348 (0.544) |
0.203 (0.373) |
0.165 (0.324) |
1e-05 (8.4e-05) |
0.77 (0.892) |
0.277 (0.462) |
5e-05 (0.000314) |
1 (1.00) |
amp xq11 2 | 135 (15%) | 746 |
0.0756 (0.186) |
0.315 (0.512) |
0.0191 (0.0583) |
0.0176 (0.054) |
0.674 (0.822) |
0.562 (0.738) |
6.27e-05 (0.000372) |
1 (1.00) |
0.371 (0.56) |
1e-05 (8.4e-05) |
0.743 (0.871) |
0.0331 (0.095) |
0.153 (0.304) |
0.522 (0.709) |
del 1p36 31 | 209 (24%) | 672 |
0.122 (0.26) |
0.0863 (0.204) |
1e-05 (8.4e-05) |
1e-05 (8.4e-05) |
0.0231 (0.069) |
0.422 (0.608) |
0.355 (0.549) |
0.564 (0.738) |
0.101 (0.23) |
1e-05 (8.4e-05) |
0.402 (0.588) |
0.278 (0.462) |
0.594 (0.754) |
0.336 (0.539) |
del 1p31 1 | 166 (19%) | 715 |
0.555 (0.735) |
0.042 (0.114) |
4e-05 (0.000263) |
3e-05 (0.000218) |
0.0861 (0.204) |
0.885 (0.978) |
0.855 (0.961) |
1 (1.00) |
0.991 (1.00) |
1e-05 (8.4e-05) |
0.701 (0.839) |
0.537 (0.721) |
0.409 (0.594) |
0.0888 (0.208) |
del 3p14 1 | 408 (46%) | 473 |
0.000915 (0.00423) |
0.986 (1.00) |
0.00019 (0.00104) |
4e-05 (0.000263) |
0.152 (0.304) |
0.564 (0.738) |
0.251 (0.441) |
0.225 (0.403) |
0.373 (0.561) |
1e-05 (8.4e-05) |
0.355 (0.549) |
0.0554 (0.145) |
0.00036 (0.00184) |
0.633 (0.785) |
del 3p12 2 | 336 (38%) | 545 |
0.000231 (0.00122) |
0.777 (0.899) |
0.0106 (0.0349) |
0.00293 (0.0118) |
0.342 (0.541) |
0.649 (0.794) |
0.141 (0.289) |
0.148 (0.299) |
0.914 (1.00) |
1e-05 (8.4e-05) |
0.296 (0.487) |
0.0829 (0.199) |
0.00585 (0.0209) |
0.743 (0.871) |
del 5p15 33 | 31 (4%) | 850 |
0.964 (1.00) |
0.00433 (0.0161) |
0.00143 (0.0062) |
0.00062 (0.00302) |
0.00814 (0.0278) |
0.74 (0.871) |
0.174 (0.337) |
1 (1.00) |
0.103 (0.23) |
1e-05 (8.4e-05) |
0.537 (0.721) |
0.438 (0.629) |
0.571 (0.738) |
0.142 (0.29) |
del 6q22 31 | 227 (26%) | 654 |
0.565 (0.738) |
0.188 (0.359) |
9e-05 (0.000517) |
4e-05 (0.000263) |
0.115 (0.249) |
1 (1.00) |
0.683 (0.825) |
0.576 (0.738) |
0.203 (0.373) |
1e-05 (8.4e-05) |
0.103 (0.23) |
0.371 (0.56) |
0.00129 (0.00568) |
0.256 (0.444) |
del 6q26 | 233 (26%) | 648 |
0.498 (0.684) |
0.267 (0.458) |
3e-05 (0.000218) |
4e-05 (0.000263) |
0.04 (0.109) |
1 (1.00) |
0.57 (0.738) |
0.576 (0.738) |
0.175 (0.337) |
1e-05 (8.4e-05) |
0.103 (0.23) |
0.371 (0.56) |
0.00086 (0.00405) |
0.138 (0.285) |
del 6q26 | 234 (27%) | 647 |
0.492 (0.681) |
0.274 (0.462) |
4e-05 (0.000263) |
4e-05 (0.000263) |
0.0395 (0.109) |
1 (1.00) |
0.686 (0.825) |
0.575 (0.738) |
0.175 (0.337) |
1e-05 (8.4e-05) |
0.103 (0.23) |
0.371 (0.56) |
0.00186 (0.00781) |
0.189 (0.359) |
del 8p23 2 | 184 (21%) | 697 |
0.000367 (0.00185) |
0.633 (0.785) |
0.00173 (0.00732) |
0.00113 (0.00506) |
0.495 (0.681) |
0.0255 (0.0756) |
0.725 (0.855) |
1 (1.00) |
0.407 (0.592) |
1e-05 (8.4e-05) |
0.952 (1.00) |
0.725 (0.855) |
0.00224 (0.0092) |
0.154 (0.304) |
del 10q23 31 | 164 (19%) | 717 |
0.585 (0.746) |
0.0762 (0.186) |
1e-05 (8.4e-05) |
1e-05 (8.4e-05) |
0.532 (0.721) |
0.888 (0.979) |
0.713 (0.847) |
1 (1.00) |
0.688 (0.826) |
1e-05 (8.4e-05) |
0.068 (0.172) |
0.271 (0.462) |
0.0684 (0.172) |
0.382 (0.566) |
amp 3q26 32 | 193 (22%) | 688 |
0.208 (0.377) |
0.114 (0.249) |
0.154 (0.304) |
0.195 (0.365) |
0.0458 (0.123) |
0.0072 (0.0252) |
0.194 (0.364) |
1 (1.00) |
0.48 (0.669) |
1e-05 (8.4e-05) |
0.571 (0.738) |
0.341 (0.541) |
0.0562 (0.145) |
0.704 (0.839) |
amp 19p13 2 | 98 (11%) | 783 |
0.847 (0.956) |
0.376 (0.562) |
0.00109 (0.00492) |
0.00299 (0.0118) |
0.631 (0.785) |
0.0154 (0.0488) |
0.255 (0.443) |
0.0355 (0.1) |
0.862 (0.967) |
0.00049 (0.00245) |
0.337 (0.539) |
0.881 (0.975) |
0.443 (0.636) |
0.8 (0.917) |
amp xp11 4 | 134 (15%) | 747 |
0.343 (0.542) |
0.168 (0.327) |
0.0153 (0.0488) |
0.0602 (0.153) |
0.685 (0.825) |
0.131 (0.274) |
0.000206 (0.00111) |
1 (1.00) |
0.479 (0.668) |
1e-05 (8.4e-05) |
0.991 (1.00) |
0.0714 (0.178) |
0.205 (0.374) |
0.522 (0.709) |
del 1q43 | 114 (13%) | 767 |
0.0517 (0.136) |
0.00707 (0.0249) |
0.0005 (0.00248) |
0.00091 (0.00423) |
0.494 (0.681) |
0.224 (0.403) |
0.201 (0.372) |
1 (1.00) |
0.447 (0.637) |
1e-05 (8.4e-05) |
0.807 (0.924) |
0.567 (0.738) |
0.198 (0.368) |
0.147 (0.298) |
del xp22 2 | 127 (14%) | 754 |
0.626 (0.784) |
0.00138 (0.00603) |
9e-05 (0.000517) |
0.0001 (0.000569) |
0.057 (0.146) |
0.868 (0.969) |
0.543 (0.723) |
1 (1.00) |
0.766 (0.89) |
1e-05 (8.4e-05) |
0.996 (1.00) |
0.447 (0.637) |
0.191 (0.359) |
0.462 (0.651) |
amp xp22 2 | 126 (14%) | 755 |
0.252 (0.441) |
0.278 (0.462) |
0.0724 (0.179) |
0.145 (0.296) |
0.684 (0.825) |
0.25 (0.44) |
0.00216 (0.00893) |
1 (1.00) |
0.327 (0.528) |
1e-05 (8.4e-05) |
0.678 (0.825) |
0.057 (0.146) |
0.319 (0.517) |
0.822 (0.937) |
del 16q23 3 | 37 (4%) | 844 |
1.94e-05 (0.00015) |
0.537 (0.721) |
0.00482 (0.0177) |
5e-05 (0.000314) |
0.00107 (0.00487) |
0.363 (0.555) |
1 (1.00) |
1 (1.00) |
0.339 (0.541) |
0.133 (0.276) |
0.556 (0.735) |
0.867 (0.969) |
0.495 (0.681) |
1 (1.00) |
amp 10p14 | 34 (4%) | 847 |
0.273 (0.462) |
0.333 (0.537) |
0.0715 (0.178) |
0.00072 (0.00345) |
0.0392 (0.109) |
0.575 (0.738) |
0.853 (0.96) |
1 (1.00) |
0.14 (0.289) |
0.549 (0.73) |
0.753 (0.876) |
0.19 (0.359) |
1 (1.00) |
|
amp 2q32 1 | 136 (15%) | 745 |
0.877 (0.975) |
0.203 (0.373) |
0.363 (0.555) |
0.312 (0.509) |
0.0397 (0.109) |
0.876 (0.975) |
0.276 (0.462) |
0.368 (0.56) |
0.25 (0.44) |
0.0027 (0.011) |
0.974 (1.00) |
0.394 (0.579) |
0.635 (0.785) |
0.654 (0.799) |
P value = 4.64e-05 (logrank test), Q value = 3e-04
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 873 | 228 | 0.1 - 194.8 (34.5) |
AMP PEAK 1(1Q32.1) MUTATED | 81 | 36 | 0.4 - 129.4 (27.4) |
AMP PEAK 1(1Q32.1) WILD-TYPE | 792 | 192 | 0.1 - 194.8 (35.9) |
P value = 0.034 (Wilcoxon-test), Q value = 0.096
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 875 | 60.1 (12.5) |
AMP PEAK 1(1Q32.1) MUTATED | 80 | 62.4 (12.2) |
AMP PEAK 1(1Q32.1) WILD-TYPE | 795 | 59.9 (12.5) |
P value = 4e-05 (Fisher's exact test), Q value = 0.00026
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
AMP PEAK 1(1Q32.1) MUTATED | 24 | 10 | 31 | 16 |
AMP PEAK 1(1Q32.1) WILD-TYPE | 431 | 94 | 160 | 88 |
P value = 6e-05 (Fisher's exact test), Q value = 0.00036
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
AMP PEAK 1(1Q32.1) MUTATED | 27 | 12 | 42 | 1 |
AMP PEAK 1(1Q32.1) WILD-TYPE | 452 | 115 | 216 | 14 |
P value = 0.0261 (Fisher's exact test), Q value = 0.077
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
AMP PEAK 1(1Q32.1) MUTATED | 35 | 10 | 2 |
AMP PEAK 1(1Q32.1) WILD-TYPE | 287 | 34 | 5 |
P value = 0.0515 (Wilcoxon-test), Q value = 0.14
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 142 | 87.6 (22.8) |
AMP PEAK 1(1Q32.1) MUTATED | 11 | 60.0 (47.7) |
AMP PEAK 1(1Q32.1) WILD-TYPE | 131 | 89.9 (17.9) |
P value = 0.00297 (Fisher's exact test), Q value = 0.012
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
AMP PEAK 1(1Q32.1) MUTATED | 1 | 62 | 19 |
AMP PEAK 1(1Q32.1) WILD-TYPE | 65 | 466 | 268 |
P value = 0.103 (Wilcoxon-test), Q value = 0.23
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 74 | 1973.7 (16.0) |
AMP PEAK 1(1Q32.1) MUTATED | 3 | 1989.0 (19.2) |
AMP PEAK 1(1Q32.1) WILD-TYPE | 71 | 1973.1 (15.7) |
P value = 0.0397 (Fisher's exact test), Q value = 0.11
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
AMP PEAK 2(2Q32.1) MUTATED | 48 | 11 | 3 |
AMP PEAK 2(2Q32.1) WILD-TYPE | 274 | 33 | 4 |
P value = 0.0027 (Fisher's exact test), Q value = 0.011
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
AMP PEAK 2(2Q32.1) MUTATED | 2 | 81 | 53 |
AMP PEAK 2(2Q32.1) WILD-TYPE | 64 | 447 | 234 |
P value = 0.114 (Wilcoxon-test), Q value = 0.25
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 875 | 60.1 (12.5) |
AMP PEAK 3(3Q26.32) MUTATED | 190 | 61.5 (12.0) |
AMP PEAK 3(3Q26.32) WILD-TYPE | 685 | 59.7 (12.6) |
P value = 0.0458 (Fisher's exact test), Q value = 0.12
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
AMP PEAK 3(3Q26.32) MUTATED | 59 | 15 | 1 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 263 | 29 | 6 |
P value = 0.0072 (Fisher's exact test), Q value = 0.025
nPatients | 0 | 1 |
---|---|---|
ALL | 545 | 89 |
AMP PEAK 3(3Q26.32) MUTATED | 90 | 26 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 455 | 63 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
AMP PEAK 3(3Q26.32) MUTATED | 6 | 87 | 100 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 60 | 441 | 187 |
P value = 0.0562 (Fisher's exact test), Q value = 0.15
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 15 | 121 | 719 |
AMP PEAK 3(3Q26.32) MUTATED | 2 | 1 | 26 | 155 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 0 | 14 | 95 | 564 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
AMP PEAK 4(5Q35.1) MUTATED | 173 | 42 | 91 | 66 |
AMP PEAK 4(5Q35.1) WILD-TYPE | 282 | 62 | 100 | 38 |
P value = 0.00344 (Fisher's exact test), Q value = 0.013
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
AMP PEAK 4(5Q35.1) MUTATED | 180 | 56 | 133 | 7 |
AMP PEAK 4(5Q35.1) WILD-TYPE | 299 | 71 | 125 | 8 |
P value = 0.0382 (Fisher's exact test), Q value = 0.11
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
AMP PEAK 4(5Q35.1) MUTATED | 163 | 14 | 2 |
AMP PEAK 4(5Q35.1) WILD-TYPE | 159 | 30 | 5 |
P value = 0.0159 (Fisher's exact test), Q value = 0.05
nPatients | 0 | 1 |
---|---|---|
ALL | 545 | 89 |
AMP PEAK 4(5Q35.1) MUTATED | 278 | 58 |
AMP PEAK 4(5Q35.1) WILD-TYPE | 267 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
AMP PEAK 4(5Q35.1) MUTATED | 8 | 332 | 36 |
AMP PEAK 4(5Q35.1) WILD-TYPE | 58 | 196 | 251 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00031
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 15 | 121 | 719 |
AMP PEAK 4(5Q35.1) MUTATED | 0 | 5 | 31 | 333 |
AMP PEAK 4(5Q35.1) WILD-TYPE | 2 | 10 | 90 | 386 |
P value = 0.0155 (Fisher's exact test), Q value = 0.049
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
AMP PEAK 5(7Q31.2) MUTATED | 194 | 38 | 70 | 57 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 261 | 66 | 121 | 47 |
P value = 0.11 (Fisher's exact test), Q value = 0.24
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
AMP PEAK 5(7Q31.2) MUTATED | 121 | 21 | 5 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 201 | 23 | 2 |
P value = 0.00201 (Fisher's exact test), Q value = 0.0084
nPatients | 0 | 1 |
---|---|---|
ALL | 545 | 89 |
AMP PEAK 5(7Q31.2) MUTATED | 191 | 47 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 354 | 42 |
P value = 7.13e-06 (Fisher's exact test), Q value = 8.4e-05
nPatients | FEMALE | MALE |
---|---|---|
ALL | 292 | 589 |
AMP PEAK 5(7Q31.2) MUTATED | 94 | 283 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 198 | 306 |
P value = 0.102 (Fisher's exact test), Q value = 0.23
nPatients | NO | YES |
---|---|---|
ALL | 400 | 3 |
AMP PEAK 5(7Q31.2) MUTATED | 186 | 3 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 214 | 0 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
AMP PEAK 5(7Q31.2) MUTATED | 25 | 175 | 177 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 41 | 353 | 110 |
P value = 0.00994 (Wilcoxon-test), Q value = 0.033
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 74 | 1973.7 (16.0) |
AMP PEAK 5(7Q31.2) MUTATED | 40 | 1969.4 (15.3) |
AMP PEAK 5(7Q31.2) WILD-TYPE | 34 | 1978.8 (15.5) |
P value = 0.00103 (logrank test), Q value = 0.0047
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 873 | 228 | 0.1 - 194.8 (34.5) |
AMP PEAK 6(8Q24.22) MUTATED | 124 | 45 | 0.2 - 152.0 (26.7) |
AMP PEAK 6(8Q24.22) WILD-TYPE | 749 | 183 | 0.1 - 194.8 (36.4) |
P value = 0.034 (Wilcoxon-test), Q value = 0.096
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 875 | 60.1 (12.5) |
AMP PEAK 6(8Q24.22) MUTATED | 125 | 62.2 (12.6) |
AMP PEAK 6(8Q24.22) WILD-TYPE | 750 | 59.8 (12.5) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
AMP PEAK 6(8Q24.22) MUTATED | 35 | 23 | 39 | 27 |
AMP PEAK 6(8Q24.22) WILD-TYPE | 420 | 81 | 152 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
AMP PEAK 6(8Q24.22) MUTATED | 36 | 24 | 61 | 4 |
AMP PEAK 6(8Q24.22) WILD-TYPE | 443 | 103 | 197 | 11 |
P value = 0.0226 (Fisher's exact test), Q value = 0.068
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
AMP PEAK 6(8Q24.22) MUTATED | 53 | 13 | 3 |
AMP PEAK 6(8Q24.22) WILD-TYPE | 269 | 31 | 4 |
P value = 0.0102 (Fisher's exact test), Q value = 0.034
nPatients | 0 | 1 |
---|---|---|
ALL | 545 | 89 |
AMP PEAK 6(8Q24.22) MUTATED | 74 | 22 |
AMP PEAK 6(8Q24.22) WILD-TYPE | 471 | 67 |
P value = 0.00128 (Fisher's exact test), Q value = 0.0057
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
AMP PEAK 6(8Q24.22) MUTATED | 18 | 79 | 28 |
AMP PEAK 6(8Q24.22) WILD-TYPE | 48 | 449 | 259 |
P value = 0.0218 (Fisher's exact test), Q value = 0.066
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 15 | 121 | 719 |
AMP PEAK 6(8Q24.22) MUTATED | 0 | 4 | 8 | 110 |
AMP PEAK 6(8Q24.22) WILD-TYPE | 2 | 11 | 113 | 609 |
P value = 0.0715 (Fisher's exact test), Q value = 0.18
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
AMP PEAK 7(10P14) MUTATED | 12 | 7 | 6 | 7 |
AMP PEAK 7(10P14) WILD-TYPE | 443 | 97 | 185 | 97 |
P value = 0.00072 (Fisher's exact test), Q value = 0.0034
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
AMP PEAK 7(10P14) MUTATED | 13 | 9 | 8 | 4 |
AMP PEAK 7(10P14) WILD-TYPE | 466 | 118 | 250 | 11 |
P value = 0.0392 (Fisher's exact test), Q value = 0.11
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
AMP PEAK 7(10P14) MUTATED | 12 | 5 | 1 |
AMP PEAK 7(10P14) WILD-TYPE | 310 | 39 | 6 |
P value = 0.0462 (Wilcoxon-test), Q value = 0.12
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 875 | 60.1 (12.5) |
AMP PEAK 8(17Q25.2) MUTATED | 241 | 61.5 (12.2) |
AMP PEAK 8(17Q25.2) WILD-TYPE | 634 | 59.6 (12.6) |
P value = 0.00056 (Fisher's exact test), Q value = 0.0028
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
AMP PEAK 8(17Q25.2) MUTATED | 146 | 22 | 42 | 16 |
AMP PEAK 8(17Q25.2) WILD-TYPE | 309 | 82 | 149 | 88 |
P value = 0.00273 (Fisher's exact test), Q value = 0.011
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
AMP PEAK 8(17Q25.2) MUTATED | 156 | 31 | 52 | 4 |
AMP PEAK 8(17Q25.2) WILD-TYPE | 323 | 96 | 206 | 11 |
P value = 0.00015 (Fisher's exact test), Q value = 0.00084
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
AMP PEAK 8(17Q25.2) MUTATED | 47 | 16 | 4 |
AMP PEAK 8(17Q25.2) WILD-TYPE | 275 | 28 | 3 |
P value = 0.00078 (Fisher's exact test), Q value = 0.0037
nPatients | FEMALE | MALE |
---|---|---|
ALL | 292 | 589 |
AMP PEAK 8(17Q25.2) MUTATED | 60 | 184 |
AMP PEAK 8(17Q25.2) WILD-TYPE | 232 | 405 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
AMP PEAK 8(17Q25.2) MUTATED | 1 | 43 | 200 |
AMP PEAK 8(17Q25.2) WILD-TYPE | 65 | 485 | 87 |
P value = 0.108 (Wilcoxon-test), Q value = 0.24
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 74 | 1973.7 (16.0) |
AMP PEAK 8(17Q25.2) MUTATED | 37 | 1971.2 (15.7) |
AMP PEAK 8(17Q25.2) WILD-TYPE | 37 | 1976.3 (16.1) |
P value = 0.0176 (Fisher's exact test), Q value = 0.054
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 15 | 121 | 719 |
AMP PEAK 8(17Q25.2) MUTATED | 2 | 6 | 41 | 185 |
AMP PEAK 8(17Q25.2) WILD-TYPE | 0 | 9 | 80 | 534 |
P value = 0.00109 (Fisher's exact test), Q value = 0.0049
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
AMP PEAK 9(19P13.2) MUTATED | 35 | 18 | 19 | 20 |
AMP PEAK 9(19P13.2) WILD-TYPE | 420 | 86 | 172 | 84 |
P value = 0.00299 (Fisher's exact test), Q value = 0.012
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
AMP PEAK 9(19P13.2) MUTATED | 38 | 23 | 34 | 3 |
AMP PEAK 9(19P13.2) WILD-TYPE | 441 | 104 | 224 | 12 |
P value = 0.0154 (Fisher's exact test), Q value = 0.049
nPatients | 0 | 1 |
---|---|---|
ALL | 545 | 89 |
AMP PEAK 9(19P13.2) MUTATED | 52 | 17 |
AMP PEAK 9(19P13.2) WILD-TYPE | 493 | 72 |
P value = 0.0355 (Fisher's exact test), Q value = 0.1
nPatients | NO | YES |
---|---|---|
ALL | 400 | 3 |
AMP PEAK 9(19P13.2) MUTATED | 44 | 2 |
AMP PEAK 9(19P13.2) WILD-TYPE | 356 | 1 |
P value = 0.00049 (Fisher's exact test), Q value = 0.0025
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
AMP PEAK 9(19P13.2) MUTATED | 18 | 49 | 31 |
AMP PEAK 9(19P13.2) WILD-TYPE | 48 | 479 | 256 |
P value = 0.0724 (Fisher's exact test), Q value = 0.18
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
AMP PEAK 10(XP22.2) MUTATED | 72 | 15 | 16 | 16 |
AMP PEAK 10(XP22.2) WILD-TYPE | 383 | 89 | 175 | 88 |
P value = 0.00216 (Fisher's exact test), Q value = 0.0089
nPatients | FEMALE | MALE |
---|---|---|
ALL | 292 | 589 |
AMP PEAK 10(XP22.2) MUTATED | 27 | 99 |
AMP PEAK 10(XP22.2) WILD-TYPE | 265 | 490 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
AMP PEAK 10(XP22.2) MUTATED | 7 | 31 | 88 |
AMP PEAK 10(XP22.2) WILD-TYPE | 59 | 497 | 199 |
P value = 0.057 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 74 | 1973.7 (16.0) |
AMP PEAK 10(XP22.2) MUTATED | 17 | 1967.9 (13.8) |
AMP PEAK 10(XP22.2) WILD-TYPE | 57 | 1975.5 (16.3) |
P value = 0.0153 (Fisher's exact test), Q value = 0.049
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
AMP PEAK 11(XP11.4) MUTATED | 78 | 15 | 15 | 17 |
AMP PEAK 11(XP11.4) WILD-TYPE | 377 | 89 | 176 | 87 |
P value = 0.0602 (Fisher's exact test), Q value = 0.15
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
AMP PEAK 11(XP11.4) MUTATED | 82 | 22 | 27 | 3 |
AMP PEAK 11(XP11.4) WILD-TYPE | 397 | 105 | 231 | 12 |
P value = 0.000206 (Fisher's exact test), Q value = 0.0011
nPatients | FEMALE | MALE |
---|---|---|
ALL | 292 | 589 |
AMP PEAK 11(XP11.4) MUTATED | 26 | 108 |
AMP PEAK 11(XP11.4) WILD-TYPE | 266 | 481 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
AMP PEAK 11(XP11.4) MUTATED | 7 | 33 | 94 |
AMP PEAK 11(XP11.4) WILD-TYPE | 59 | 495 | 193 |
P value = 0.0714 (Wilcoxon-test), Q value = 0.18
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 74 | 1973.7 (16.0) |
AMP PEAK 11(XP11.4) MUTATED | 18 | 1968.3 (13.5) |
AMP PEAK 11(XP11.4) WILD-TYPE | 56 | 1975.5 (16.4) |
P value = 0.0756 (logrank test), Q value = 0.19
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 873 | 228 | 0.1 - 194.8 (34.5) |
AMP PEAK 12(XQ11.2) MUTATED | 132 | 23 | 0.1 - 194.8 (28.6) |
AMP PEAK 12(XQ11.2) WILD-TYPE | 741 | 205 | 0.1 - 152.0 (35.9) |
P value = 0.0191 (Fisher's exact test), Q value = 0.058
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
AMP PEAK 12(XQ11.2) MUTATED | 80 | 15 | 16 | 13 |
AMP PEAK 12(XQ11.2) WILD-TYPE | 375 | 89 | 175 | 91 |
P value = 0.0176 (Fisher's exact test), Q value = 0.054
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
AMP PEAK 12(XQ11.2) MUTATED | 86 | 22 | 25 | 2 |
AMP PEAK 12(XQ11.2) WILD-TYPE | 393 | 105 | 233 | 13 |
P value = 6.27e-05 (Fisher's exact test), Q value = 0.00037
nPatients | FEMALE | MALE |
---|---|---|
ALL | 292 | 589 |
AMP PEAK 12(XQ11.2) MUTATED | 25 | 110 |
AMP PEAK 12(XQ11.2) WILD-TYPE | 267 | 479 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
AMP PEAK 12(XQ11.2) MUTATED | 7 | 29 | 99 |
AMP PEAK 12(XQ11.2) WILD-TYPE | 59 | 499 | 188 |
P value = 0.0331 (Wilcoxon-test), Q value = 0.095
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 74 | 1973.7 (16.0) |
AMP PEAK 12(XQ11.2) MUTATED | 18 | 1966.9 (15.0) |
AMP PEAK 12(XQ11.2) WILD-TYPE | 56 | 1975.9 (15.8) |
P value = 0.0923 (logrank test), Q value = 0.21
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 873 | 228 | 0.1 - 194.8 (34.5) |
AMP PEAK 13(XQ28) MUTATED | 134 | 24 | 0.1 - 194.8 (28.6) |
AMP PEAK 13(XQ28) WILD-TYPE | 739 | 204 | 0.1 - 152.0 (36.2) |
P value = 0.0786 (Fisher's exact test), Q value = 0.19
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
AMP PEAK 13(XQ28) MUTATED | 80 | 13 | 19 | 15 |
AMP PEAK 13(XQ28) WILD-TYPE | 375 | 91 | 172 | 89 |
P value = 0.067 (Fisher's exact test), Q value = 0.17
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
AMP PEAK 13(XQ28) MUTATED | 85 | 21 | 28 | 3 |
AMP PEAK 13(XQ28) WILD-TYPE | 394 | 106 | 230 | 12 |
P value = 0.00769 (Fisher's exact test), Q value = 0.026
nPatients | FEMALE | MALE |
---|---|---|
ALL | 292 | 589 |
AMP PEAK 13(XQ28) MUTATED | 32 | 105 |
AMP PEAK 13(XQ28) WILD-TYPE | 260 | 484 |
P value = 0.115 (Wilcoxon-test), Q value = 0.25
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 142 | 87.6 (22.8) |
AMP PEAK 13(XQ28) MUTATED | 30 | 91.7 (19.0) |
AMP PEAK 13(XQ28) WILD-TYPE | 112 | 86.5 (23.7) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
AMP PEAK 13(XQ28) MUTATED | 8 | 38 | 91 |
AMP PEAK 13(XQ28) WILD-TYPE | 58 | 490 | 196 |
P value = 0.116 (Fisher's exact test), Q value = 0.25
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 15 | 121 | 719 |
AMP PEAK 13(XQ28) MUTATED | 1 | 2 | 25 | 103 |
AMP PEAK 13(XQ28) WILD-TYPE | 1 | 13 | 96 | 616 |
P value = 0.0863 (Wilcoxon-test), Q value = 0.2
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 875 | 60.1 (12.5) |
DEL PEAK 1(1P36.31) MUTATED | 208 | 58.5 (13.6) |
DEL PEAK 1(1P36.31) WILD-TYPE | 667 | 60.6 (12.1) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 1(1P36.31) MUTATED | 73 | 38 | 59 | 31 |
DEL PEAK 1(1P36.31) WILD-TYPE | 382 | 66 | 132 | 73 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 1(1P36.31) MUTATED | 80 | 47 | 76 | 6 |
DEL PEAK 1(1P36.31) WILD-TYPE | 399 | 80 | 182 | 9 |
P value = 0.0231 (Fisher's exact test), Q value = 0.069
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
DEL PEAK 1(1P36.31) MUTATED | 92 | 20 | 4 |
DEL PEAK 1(1P36.31) WILD-TYPE | 230 | 24 | 3 |
P value = 0.101 (Wilcoxon-test), Q value = 0.23
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 142 | 87.6 (22.8) |
DEL PEAK 1(1P36.31) MUTATED | 33 | 80.9 (30.2) |
DEL PEAK 1(1P36.31) WILD-TYPE | 109 | 89.6 (19.8) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 1(1P36.31) MUTATED | 53 | 102 | 54 |
DEL PEAK 1(1P36.31) WILD-TYPE | 13 | 426 | 233 |
P value = 0.042 (Wilcoxon-test), Q value = 0.11
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 875 | 60.1 (12.5) |
DEL PEAK 2(1P31.1) MUTATED | 166 | 58.0 (13.9) |
DEL PEAK 2(1P31.1) WILD-TYPE | 709 | 60.6 (12.1) |
P value = 4e-05 (Fisher's exact test), Q value = 0.00026
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 2(1P31.1) MUTATED | 60 | 34 | 42 | 24 |
DEL PEAK 2(1P31.1) WILD-TYPE | 395 | 70 | 149 | 80 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00022
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 2(1P31.1) MUTATED | 66 | 40 | 54 | 6 |
DEL PEAK 2(1P31.1) WILD-TYPE | 413 | 87 | 204 | 9 |
P value = 0.0861 (Fisher's exact test), Q value = 0.2
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
DEL PEAK 2(1P31.1) MUTATED | 72 | 15 | 3 |
DEL PEAK 2(1P31.1) WILD-TYPE | 250 | 29 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 2(1P31.1) MUTATED | 53 | 77 | 36 |
DEL PEAK 2(1P31.1) WILD-TYPE | 13 | 451 | 251 |
P value = 0.0888 (Fisher's exact test), Q value = 0.21
nPatients | HISPANIC OR LATINO | NOT HISPANIC OR LATINO |
---|---|---|
ALL | 42 | 621 |
DEL PEAK 2(1P31.1) MUTATED | 11 | 99 |
DEL PEAK 2(1P31.1) WILD-TYPE | 31 | 522 |
P value = 0.0517 (logrank test), Q value = 0.14
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 873 | 228 | 0.1 - 194.8 (34.5) |
DEL PEAK 3(1Q43) MUTATED | 113 | 27 | 0.1 - 152.0 (49.6) |
DEL PEAK 3(1Q43) WILD-TYPE | 760 | 201 | 0.1 - 194.8 (32.3) |
P value = 0.00707 (Wilcoxon-test), Q value = 0.025
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 875 | 60.1 (12.5) |
DEL PEAK 3(1Q43) MUTATED | 114 | 56.7 (14.5) |
DEL PEAK 3(1Q43) WILD-TYPE | 761 | 60.6 (12.1) |
P value = 5e-04 (Fisher's exact test), Q value = 0.0025
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 3(1Q43) MUTATED | 46 | 28 | 23 | 13 |
DEL PEAK 3(1Q43) WILD-TYPE | 409 | 76 | 168 | 91 |
P value = 0.00091 (Fisher's exact test), Q value = 0.0042
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 3(1Q43) MUTATED | 48 | 29 | 33 | 4 |
DEL PEAK 3(1Q43) WILD-TYPE | 431 | 98 | 225 | 11 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 3(1Q43) MUTATED | 51 | 42 | 21 |
DEL PEAK 3(1Q43) WILD-TYPE | 15 | 486 | 266 |
P value = 0.029 (logrank test), Q value = 0.084
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 873 | 228 | 0.1 - 194.8 (34.5) |
DEL PEAK 4(2Q37.3) MUTATED | 109 | 23 | 0.4 - 152.0 (44.5) |
DEL PEAK 4(2Q37.3) WILD-TYPE | 764 | 205 | 0.1 - 194.8 (31.8) |
P value = 0.00326 (Wilcoxon-test), Q value = 0.013
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 875 | 60.1 (12.5) |
DEL PEAK 4(2Q37.3) MUTATED | 110 | 56.6 (14.1) |
DEL PEAK 4(2Q37.3) WILD-TYPE | 765 | 60.6 (12.2) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 4(2Q37.3) MUTATED | 38 | 32 | 28 | 11 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 417 | 72 | 163 | 93 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 4(2Q37.3) MUTATED | 39 | 34 | 35 | 3 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 440 | 93 | 223 | 12 |
P value = 0.085 (Fisher's exact test), Q value = 0.2
nPatients | 0 | 1 |
---|---|---|
ALL | 545 | 89 |
DEL PEAK 4(2Q37.3) MUTATED | 75 | 6 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 470 | 83 |
P value = 0.0153 (Wilcoxon-test), Q value = 0.049
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 142 | 87.6 (22.8) |
DEL PEAK 4(2Q37.3) MUTATED | 11 | 98.2 (4.0) |
DEL PEAK 4(2Q37.3) WILD-TYPE | 131 | 86.7 (23.5) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 4(2Q37.3) MUTATED | 49 | 50 | 12 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 17 | 478 | 275 |
P value = 0.000307 (logrank test), Q value = 0.0016
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 873 | 228 | 0.1 - 194.8 (34.5) |
DEL PEAK 5(3P26.3) MUTATED | 488 | 159 | 0.1 - 149.2 (38.4) |
DEL PEAK 5(3P26.3) WILD-TYPE | 385 | 69 | 0.1 - 194.8 (28.8) |
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 5(3P26.3) MUTATED | 228 | 57 | 129 | 74 |
DEL PEAK 5(3P26.3) WILD-TYPE | 227 | 47 | 62 | 30 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 5(3P26.3) MUTATED | 234 | 71 | 177 | 7 |
DEL PEAK 5(3P26.3) WILD-TYPE | 245 | 56 | 81 | 8 |
P value = 0.0131 (Fisher's exact test), Q value = 0.043
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
DEL PEAK 5(3P26.3) MUTATED | 214 | 22 | 2 |
DEL PEAK 5(3P26.3) WILD-TYPE | 108 | 22 | 5 |
P value = 0.105 (Fisher's exact test), Q value = 0.23
nPatients | 0 | 1 |
---|---|---|
ALL | 545 | 89 |
DEL PEAK 5(3P26.3) MUTATED | 374 | 69 |
DEL PEAK 5(3P26.3) WILD-TYPE | 171 | 20 |
P value = 0.0518 (Fisher's exact test), Q value = 0.14
nPatients | FEMALE | MALE |
---|---|---|
ALL | 292 | 589 |
DEL PEAK 5(3P26.3) MUTATED | 176 | 313 |
DEL PEAK 5(3P26.3) WILD-TYPE | 116 | 276 |
P value = 0.0801 (Wilcoxon-test), Q value = 0.19
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 142 | 87.6 (22.8) |
DEL PEAK 5(3P26.3) MUTATED | 53 | 82.1 (29.8) |
DEL PEAK 5(3P26.3) WILD-TYPE | 89 | 90.9 (16.8) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 5(3P26.3) MUTATED | 10 | 455 | 24 |
DEL PEAK 5(3P26.3) WILD-TYPE | 56 | 73 | 263 |
P value = 0.0787 (Wilcoxon-test), Q value = 0.19
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 74 | 1973.7 (16.0) |
DEL PEAK 5(3P26.3) MUTATED | 19 | 1979.3 (18.0) |
DEL PEAK 5(3P26.3) WILD-TYPE | 55 | 1971.8 (14.9) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 15 | 121 | 719 |
DEL PEAK 5(3P26.3) MUTATED | 0 | 7 | 43 | 430 |
DEL PEAK 5(3P26.3) WILD-TYPE | 2 | 8 | 78 | 289 |
P value = 7.07e-07 (logrank test), Q value = 5.5e-05
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 873 | 228 | 0.1 - 194.8 (34.5) |
DEL PEAK 6(3P21.2) MUTATED | 502 | 171 | 0.1 - 149.2 (37.3) |
DEL PEAK 6(3P21.2) WILD-TYPE | 371 | 57 | 0.1 - 194.8 (29.4) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 6(3P21.2) MUTATED | 228 | 57 | 135 | 81 |
DEL PEAK 6(3P21.2) WILD-TYPE | 227 | 47 | 56 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 6(3P21.2) MUTATED | 234 | 72 | 190 | 7 |
DEL PEAK 6(3P21.2) WILD-TYPE | 245 | 55 | 68 | 8 |
P value = 0.0035 (Fisher's exact test), Q value = 0.013
nPatients | 0 | 1 |
---|---|---|
ALL | 545 | 89 |
DEL PEAK 6(3P21.2) MUTATED | 379 | 75 |
DEL PEAK 6(3P21.2) WILD-TYPE | 166 | 14 |
P value = 0.112 (Fisher's exact test), Q value = 0.24
nPatients | FEMALE | MALE |
---|---|---|
ALL | 292 | 589 |
DEL PEAK 6(3P21.2) MUTATED | 178 | 325 |
DEL PEAK 6(3P21.2) WILD-TYPE | 114 | 264 |
P value = 0.0271 (Wilcoxon-test), Q value = 0.08
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 142 | 87.6 (22.8) |
DEL PEAK 6(3P21.2) MUTATED | 56 | 80.9 (31.0) |
DEL PEAK 6(3P21.2) WILD-TYPE | 86 | 92.0 (13.9) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 6(3P21.2) MUTATED | 11 | 465 | 27 |
DEL PEAK 6(3P21.2) WILD-TYPE | 55 | 63 | 260 |
P value = 0.042 (Wilcoxon-test), Q value = 0.11
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 74 | 1973.7 (16.0) |
DEL PEAK 6(3P21.2) MUTATED | 21 | 1979.4 (17.0) |
DEL PEAK 6(3P21.2) WILD-TYPE | 53 | 1971.5 (15.1) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 15 | 121 | 719 |
DEL PEAK 6(3P21.2) MUTATED | 0 | 8 | 43 | 444 |
DEL PEAK 6(3P21.2) WILD-TYPE | 2 | 7 | 78 | 275 |
P value = 0.000915 (logrank test), Q value = 0.0042
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 873 | 228 | 0.1 - 194.8 (34.5) |
DEL PEAK 7(3P14.1) MUTATED | 408 | 136 | 0.1 - 141.7 (38.5) |
DEL PEAK 7(3P14.1) WILD-TYPE | 465 | 92 | 0.1 - 194.8 (30.4) |
P value = 0.00019 (Fisher's exact test), Q value = 0.001
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 7(3P14.1) MUTATED | 188 | 49 | 111 | 59 |
DEL PEAK 7(3P14.1) WILD-TYPE | 267 | 55 | 80 | 45 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00026
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 7(3P14.1) MUTATED | 192 | 60 | 151 | 5 |
DEL PEAK 7(3P14.1) WILD-TYPE | 287 | 67 | 107 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 7(3P14.1) MUTATED | 11 | 373 | 24 |
DEL PEAK 7(3P14.1) WILD-TYPE | 55 | 155 | 263 |
P value = 0.0554 (Wilcoxon-test), Q value = 0.14
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 74 | 1973.7 (16.0) |
DEL PEAK 7(3P14.1) MUTATED | 17 | 1979.9 (18.1) |
DEL PEAK 7(3P14.1) WILD-TYPE | 57 | 1971.9 (15.0) |
P value = 0.00036 (Fisher's exact test), Q value = 0.0018
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 15 | 121 | 719 |
DEL PEAK 7(3P14.1) MUTATED | 0 | 7 | 37 | 357 |
DEL PEAK 7(3P14.1) WILD-TYPE | 2 | 8 | 84 | 362 |
P value = 0.000231 (logrank test), Q value = 0.0012
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 873 | 228 | 0.1 - 194.8 (34.5) |
DEL PEAK 8(3P12.2) MUTATED | 336 | 117 | 0.1 - 141.7 (38.5) |
DEL PEAK 8(3P12.2) WILD-TYPE | 537 | 111 | 0.1 - 194.8 (30.7) |
P value = 0.0106 (Fisher's exact test), Q value = 0.035
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 8(3P12.2) MUTATED | 156 | 42 | 88 | 49 |
DEL PEAK 8(3P12.2) WILD-TYPE | 299 | 62 | 103 | 55 |
P value = 0.00293 (Fisher's exact test), Q value = 0.012
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 8(3P12.2) MUTATED | 160 | 51 | 121 | 4 |
DEL PEAK 8(3P12.2) WILD-TYPE | 319 | 76 | 137 | 11 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 8(3P12.2) MUTATED | 11 | 305 | 20 |
DEL PEAK 8(3P12.2) WILD-TYPE | 55 | 223 | 267 |
P value = 0.0829 (Wilcoxon-test), Q value = 0.2
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 74 | 1973.7 (16.0) |
DEL PEAK 8(3P12.2) MUTATED | 13 | 1980.2 (17.0) |
DEL PEAK 8(3P12.2) WILD-TYPE | 61 | 1972.3 (15.6) |
P value = 0.00585 (Fisher's exact test), Q value = 0.021
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 15 | 121 | 719 |
DEL PEAK 8(3P12.2) MUTATED | 0 | 6 | 31 | 293 |
DEL PEAK 8(3P12.2) WILD-TYPE | 2 | 9 | 90 | 426 |
P value = 1.3e-10 (logrank test), Q value = 1.8e-08
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 873 | 228 | 0.1 - 194.8 (34.5) |
DEL PEAK 9(4Q34.3) MUTATED | 112 | 55 | 0.4 - 133.7 (30.3) |
DEL PEAK 9(4Q34.3) WILD-TYPE | 761 | 173 | 0.1 - 194.8 (35.9) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 9(4Q34.3) MUTATED | 26 | 10 | 48 | 26 |
DEL PEAK 9(4Q34.3) WILD-TYPE | 429 | 94 | 143 | 78 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 9(4Q34.3) MUTATED | 29 | 15 | 62 | 7 |
DEL PEAK 9(4Q34.3) WILD-TYPE | 450 | 112 | 196 | 8 |
P value = 0.00173 (Fisher's exact test), Q value = 0.0073
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
DEL PEAK 9(4Q34.3) MUTATED | 40 | 15 | 1 |
DEL PEAK 9(4Q34.3) WILD-TYPE | 282 | 29 | 6 |
P value = 0.014 (Fisher's exact test), Q value = 0.045
nPatients | 0 | 1 |
---|---|---|
ALL | 545 | 89 |
DEL PEAK 9(4Q34.3) MUTATED | 71 | 21 |
DEL PEAK 9(4Q34.3) WILD-TYPE | 474 | 68 |
P value = 0.0332 (Fisher's exact test), Q value = 0.095
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 9(4Q34.3) MUTATED | 3 | 78 | 32 |
DEL PEAK 9(4Q34.3) WILD-TYPE | 63 | 450 | 255 |
P value = 0.0496 (Fisher's exact test), Q value = 0.13
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 15 | 121 | 719 |
DEL PEAK 9(4Q34.3) MUTATED | 0 | 4 | 8 | 95 |
DEL PEAK 9(4Q34.3) WILD-TYPE | 2 | 11 | 113 | 624 |
P value = 0.00433 (Wilcoxon-test), Q value = 0.016
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 875 | 60.1 (12.5) |
DEL PEAK 10(5P15.33) MUTATED | 30 | 52.4 (14.6) |
DEL PEAK 10(5P15.33) WILD-TYPE | 845 | 60.4 (12.4) |
P value = 0.00143 (Fisher's exact test), Q value = 0.0062
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 10(5P15.33) MUTATED | 7 | 9 | 9 | 5 |
DEL PEAK 10(5P15.33) WILD-TYPE | 448 | 95 | 182 | 99 |
P value = 0.00062 (Fisher's exact test), Q value = 0.003
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 10(5P15.33) MUTATED | 7 | 11 | 13 | 0 |
DEL PEAK 10(5P15.33) WILD-TYPE | 472 | 116 | 245 | 15 |
P value = 0.00814 (Fisher's exact test), Q value = 0.028
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
DEL PEAK 10(5P15.33) MUTATED | 13 | 5 | 2 |
DEL PEAK 10(5P15.33) WILD-TYPE | 309 | 39 | 5 |
P value = 0.103 (Wilcoxon-test), Q value = 0.23
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 142 | 87.6 (22.8) |
DEL PEAK 10(5P15.33) MUTATED | 6 | 70.0 (38.5) |
DEL PEAK 10(5P15.33) WILD-TYPE | 136 | 88.4 (21.8) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 10(5P15.33) MUTATED | 10 | 8 | 13 |
DEL PEAK 10(5P15.33) WILD-TYPE | 56 | 520 | 274 |
P value = 9e-05 (Fisher's exact test), Q value = 0.00052
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 11(6Q22.31) MUTATED | 93 | 41 | 55 | 36 |
DEL PEAK 11(6Q22.31) WILD-TYPE | 362 | 63 | 136 | 68 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00026
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 11(6Q22.31) MUTATED | 95 | 44 | 81 | 7 |
DEL PEAK 11(6Q22.31) WILD-TYPE | 384 | 83 | 177 | 8 |
P value = 0.115 (Fisher's exact test), Q value = 0.25
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
DEL PEAK 11(6Q22.31) MUTATED | 89 | 16 | 4 |
DEL PEAK 11(6Q22.31) WILD-TYPE | 233 | 28 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 11(6Q22.31) MUTATED | 51 | 147 | 29 |
DEL PEAK 11(6Q22.31) WILD-TYPE | 15 | 381 | 258 |
P value = 0.103 (Wilcoxon-test), Q value = 0.23
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 106 | 30.8 (24.9) |
DEL PEAK 11(6Q22.31) MUTATED | 23 | 25.0 (20.0) |
DEL PEAK 11(6Q22.31) WILD-TYPE | 83 | 32.4 (25.9) |
P value = 0.00129 (Fisher's exact test), Q value = 0.0057
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 15 | 121 | 719 |
DEL PEAK 11(6Q22.31) MUTATED | 0 | 6 | 16 | 197 |
DEL PEAK 11(6Q22.31) WILD-TYPE | 2 | 9 | 105 | 522 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00022
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 12(6Q26) MUTATED | 94 | 43 | 58 | 35 |
DEL PEAK 12(6Q26) WILD-TYPE | 361 | 61 | 133 | 69 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00026
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 12(6Q26) MUTATED | 96 | 46 | 85 | 6 |
DEL PEAK 12(6Q26) WILD-TYPE | 383 | 81 | 173 | 9 |
P value = 0.04 (Fisher's exact test), Q value = 0.11
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
DEL PEAK 12(6Q26) MUTATED | 94 | 16 | 5 |
DEL PEAK 12(6Q26) WILD-TYPE | 228 | 28 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 12(6Q26) MUTATED | 51 | 151 | 31 |
DEL PEAK 12(6Q26) WILD-TYPE | 15 | 377 | 256 |
P value = 0.103 (Wilcoxon-test), Q value = 0.23
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 106 | 30.8 (24.9) |
DEL PEAK 12(6Q26) MUTATED | 23 | 25.0 (20.0) |
DEL PEAK 12(6Q26) WILD-TYPE | 83 | 32.4 (25.9) |
P value = 0.00086 (Fisher's exact test), Q value = 0.004
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 15 | 121 | 719 |
DEL PEAK 12(6Q26) MUTATED | 0 | 6 | 16 | 203 |
DEL PEAK 12(6Q26) WILD-TYPE | 2 | 9 | 105 | 516 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00026
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 13(6Q26) MUTATED | 95 | 43 | 58 | 35 |
DEL PEAK 13(6Q26) WILD-TYPE | 360 | 61 | 133 | 69 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00026
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 13(6Q26) MUTATED | 97 | 46 | 85 | 6 |
DEL PEAK 13(6Q26) WILD-TYPE | 382 | 81 | 173 | 9 |
P value = 0.0395 (Fisher's exact test), Q value = 0.11
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
DEL PEAK 13(6Q26) MUTATED | 94 | 16 | 5 |
DEL PEAK 13(6Q26) WILD-TYPE | 228 | 28 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 13(6Q26) MUTATED | 51 | 151 | 32 |
DEL PEAK 13(6Q26) WILD-TYPE | 15 | 377 | 255 |
P value = 0.103 (Wilcoxon-test), Q value = 0.23
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 106 | 30.8 (24.9) |
DEL PEAK 13(6Q26) MUTATED | 23 | 25.0 (20.0) |
DEL PEAK 13(6Q26) WILD-TYPE | 83 | 32.4 (25.9) |
P value = 0.00186 (Fisher's exact test), Q value = 0.0078
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 15 | 121 | 719 |
DEL PEAK 13(6Q26) MUTATED | 0 | 6 | 17 | 203 |
DEL PEAK 13(6Q26) WILD-TYPE | 2 | 9 | 104 | 516 |
P value = 0.000367 (logrank test), Q value = 0.0019
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 873 | 228 | 0.1 - 194.8 (34.5) |
DEL PEAK 14(8P23.2) MUTATED | 184 | 69 | 0.1 - 137.1 (36.9) |
DEL PEAK 14(8P23.2) WILD-TYPE | 689 | 159 | 0.1 - 194.8 (34.0) |
P value = 0.00173 (Fisher's exact test), Q value = 0.0073
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 14(8P23.2) MUTATED | 75 | 25 | 47 | 33 |
DEL PEAK 14(8P23.2) WILD-TYPE | 380 | 79 | 144 | 71 |
P value = 0.00113 (Fisher's exact test), Q value = 0.0051
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 14(8P23.2) MUTATED | 78 | 31 | 69 | 6 |
DEL PEAK 14(8P23.2) WILD-TYPE | 401 | 96 | 189 | 9 |
P value = 0.0255 (Fisher's exact test), Q value = 0.076
nPatients | 0 | 1 |
---|---|---|
ALL | 545 | 89 |
DEL PEAK 14(8P23.2) MUTATED | 131 | 32 |
DEL PEAK 14(8P23.2) WILD-TYPE | 414 | 57 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 14(8P23.2) MUTATED | 12 | 154 | 18 |
DEL PEAK 14(8P23.2) WILD-TYPE | 54 | 374 | 269 |
P value = 0.00224 (Fisher's exact test), Q value = 0.0092
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 15 | 121 | 719 |
DEL PEAK 14(8P23.2) MUTATED | 0 | 7 | 14 | 160 |
DEL PEAK 14(8P23.2) WILD-TYPE | 2 | 8 | 107 | 559 |
P value = 3.98e-13 (logrank test), Q value = 1.1e-10
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 873 | 228 | 0.1 - 194.8 (34.5) |
DEL PEAK 15(9P23) MUTATED | 195 | 92 | 0.5 - 141.7 (33.5) |
DEL PEAK 15(9P23) WILD-TYPE | 678 | 136 | 0.1 - 194.8 (34.7) |
P value = 0.0277 (Wilcoxon-test), Q value = 0.081
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 875 | 60.1 (12.5) |
DEL PEAK 15(9P23) MUTATED | 196 | 61.8 (12.0) |
DEL PEAK 15(9P23) WILD-TYPE | 679 | 59.7 (12.6) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 15(9P23) MUTATED | 64 | 16 | 69 | 46 |
DEL PEAK 15(9P23) WILD-TYPE | 391 | 88 | 122 | 58 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 15(9P23) MUTATED | 68 | 23 | 100 | 7 |
DEL PEAK 15(9P23) WILD-TYPE | 411 | 104 | 158 | 8 |
P value = 0.0035 (Fisher's exact test), Q value = 0.013
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
DEL PEAK 15(9P23) MUTATED | 73 | 20 | 3 |
DEL PEAK 15(9P23) WILD-TYPE | 249 | 24 | 4 |
P value = 0.000214 (Fisher's exact test), Q value = 0.0011
nPatients | 0 | 1 |
---|---|---|
ALL | 545 | 89 |
DEL PEAK 15(9P23) MUTATED | 126 | 38 |
DEL PEAK 15(9P23) WILD-TYPE | 419 | 51 |
P value = 0.000649 (Wilcoxon-test), Q value = 0.0031
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 142 | 87.6 (22.8) |
DEL PEAK 15(9P23) MUTATED | 29 | 74.1 (34.3) |
DEL PEAK 15(9P23) WILD-TYPE | 113 | 91.1 (17.4) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 15(9P23) MUTATED | 10 | 152 | 36 |
DEL PEAK 15(9P23) WILD-TYPE | 56 | 376 | 251 |
P value = 0.0174 (Fisher's exact test), Q value = 0.054
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 15 | 121 | 719 |
DEL PEAK 15(9P23) MUTATED | 0 | 4 | 15 | 173 |
DEL PEAK 15(9P23) WILD-TYPE | 2 | 11 | 106 | 546 |
P value = 3.33e-16 (logrank test), Q value = 1.8e-13
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 873 | 228 | 0.1 - 194.8 (34.5) |
DEL PEAK 16(9P21.3) MUTATED | 204 | 99 | 0.5 - 141.7 (31.7) |
DEL PEAK 16(9P21.3) WILD-TYPE | 669 | 129 | 0.1 - 194.8 (35.9) |
P value = 0.0382 (Wilcoxon-test), Q value = 0.11
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 875 | 60.1 (12.5) |
DEL PEAK 16(9P21.3) MUTATED | 206 | 61.6 (12.2) |
DEL PEAK 16(9P21.3) WILD-TYPE | 669 | 59.7 (12.6) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 16(9P21.3) MUTATED | 66 | 15 | 74 | 50 |
DEL PEAK 16(9P21.3) WILD-TYPE | 389 | 89 | 117 | 54 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 16(9P21.3) MUTATED | 70 | 22 | 108 | 8 |
DEL PEAK 16(9P21.3) WILD-TYPE | 409 | 105 | 150 | 7 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00026
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
DEL PEAK 16(9P21.3) MUTATED | 78 | 25 | 3 |
DEL PEAK 16(9P21.3) WILD-TYPE | 244 | 19 | 4 |
P value = 5.47e-06 (Fisher's exact test), Q value = 8.4e-05
nPatients | 0 | 1 |
---|---|---|
ALL | 545 | 89 |
DEL PEAK 16(9P21.3) MUTATED | 131 | 43 |
DEL PEAK 16(9P21.3) WILD-TYPE | 414 | 46 |
P value = 0.00153 (Wilcoxon-test), Q value = 0.0066
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 142 | 87.6 (22.8) |
DEL PEAK 16(9P21.3) MUTATED | 30 | 75.0 (34.0) |
DEL PEAK 16(9P21.3) WILD-TYPE | 112 | 91.0 (17.4) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 16(9P21.3) MUTATED | 10 | 159 | 39 |
DEL PEAK 16(9P21.3) WILD-TYPE | 56 | 369 | 248 |
P value = 0.00624 (Fisher's exact test), Q value = 0.022
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 15 | 121 | 719 |
DEL PEAK 16(9P21.3) MUTATED | 0 | 3 | 15 | 185 |
DEL PEAK 16(9P21.3) WILD-TYPE | 2 | 12 | 106 | 534 |
P value = 0.0762 (Wilcoxon-test), Q value = 0.19
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 875 | 60.1 (12.5) |
DEL PEAK 17(10Q23.31) MUTATED | 162 | 58.3 (14.1) |
DEL PEAK 17(10Q23.31) WILD-TYPE | 713 | 60.5 (12.1) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 17(10Q23.31) MUTATED | 52 | 32 | 53 | 26 |
DEL PEAK 17(10Q23.31) WILD-TYPE | 403 | 72 | 138 | 78 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 17(10Q23.31) MUTATED | 54 | 33 | 70 | 7 |
DEL PEAK 17(10Q23.31) WILD-TYPE | 425 | 94 | 188 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 17(10Q23.31) MUTATED | 49 | 96 | 19 |
DEL PEAK 17(10Q23.31) WILD-TYPE | 17 | 432 | 268 |
P value = 0.068 (Wilcoxon-test), Q value = 0.17
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 106 | 30.8 (24.9) |
DEL PEAK 17(10Q23.31) MUTATED | 17 | 23.5 (20.3) |
DEL PEAK 17(10Q23.31) WILD-TYPE | 89 | 32.2 (25.5) |
P value = 0.0684 (Fisher's exact test), Q value = 0.17
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 15 | 121 | 719 |
DEL PEAK 17(10Q23.31) MUTATED | 0 | 4 | 13 | 141 |
DEL PEAK 17(10Q23.31) WILD-TYPE | 2 | 11 | 108 | 578 |
P value = 0.000133 (logrank test), Q value = 0.00075
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 873 | 228 | 0.1 - 194.8 (34.5) |
DEL PEAK 18(11Q21) MUTATED | 60 | 25 | 0.4 - 123.6 (20.6) |
DEL PEAK 18(11Q21) WILD-TYPE | 813 | 203 | 0.1 - 194.8 (36.2) |
P value = 0.00548 (Wilcoxon-test), Q value = 0.02
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 875 | 60.1 (12.5) |
DEL PEAK 18(11Q21) MUTATED | 60 | 64.1 (11.0) |
DEL PEAK 18(11Q21) WILD-TYPE | 815 | 59.8 (12.6) |
P value = 9e-05 (Fisher's exact test), Q value = 0.00052
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 18(11Q21) MUTATED | 16 | 11 | 19 | 14 |
DEL PEAK 18(11Q21) WILD-TYPE | 439 | 93 | 172 | 90 |
P value = 6e-05 (Fisher's exact test), Q value = 0.00036
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 18(11Q21) MUTATED | 17 | 12 | 31 | 1 |
DEL PEAK 18(11Q21) WILD-TYPE | 462 | 115 | 227 | 14 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
DEL PEAK 18(11Q21) MUTATED | 21 | 12 | 3 |
DEL PEAK 18(11Q21) WILD-TYPE | 301 | 32 | 4 |
P value = 0.0983 (Fisher's exact test), Q value = 0.23
nPatients | 0 | 1 |
---|---|---|
ALL | 545 | 89 |
DEL PEAK 18(11Q21) MUTATED | 30 | 9 |
DEL PEAK 18(11Q21) WILD-TYPE | 515 | 80 |
P value = 0.0973 (Wilcoxon-test), Q value = 0.23
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 142 | 87.6 (22.8) |
DEL PEAK 18(11Q21) MUTATED | 14 | 81.4 (26.8) |
DEL PEAK 18(11Q21) WILD-TYPE | 128 | 88.3 (22.3) |
P value = 0.00308 (Fisher's exact test), Q value = 0.012
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 18(11Q21) MUTATED | 9 | 25 | 27 |
DEL PEAK 18(11Q21) WILD-TYPE | 57 | 503 | 260 |
P value = 0.000299 (logrank test), Q value = 0.0016
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 873 | 228 | 0.1 - 194.8 (34.5) |
DEL PEAK 19(11Q23.1) MUTATED | 69 | 28 | 0.4 - 123.6 (21.6) |
DEL PEAK 19(11Q23.1) WILD-TYPE | 804 | 200 | 0.1 - 194.8 (36.1) |
P value = 0.00335 (Wilcoxon-test), Q value = 0.013
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 875 | 60.1 (12.5) |
DEL PEAK 19(11Q23.1) MUTATED | 70 | 64.0 (10.9) |
DEL PEAK 19(11Q23.1) WILD-TYPE | 805 | 59.8 (12.6) |
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 19(11Q23.1) MUTATED | 18 | 13 | 23 | 16 |
DEL PEAK 19(11Q23.1) WILD-TYPE | 437 | 91 | 168 | 88 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 19(11Q23.1) MUTATED | 19 | 15 | 34 | 3 |
DEL PEAK 19(11Q23.1) WILD-TYPE | 460 | 112 | 224 | 12 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00015
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
DEL PEAK 19(11Q23.1) MUTATED | 24 | 12 | 3 |
DEL PEAK 19(11Q23.1) WILD-TYPE | 298 | 32 | 4 |
P value = 0.111 (Fisher's exact test), Q value = 0.24
nPatients | 0 | 1 |
---|---|---|
ALL | 545 | 89 |
DEL PEAK 19(11Q23.1) MUTATED | 34 | 10 |
DEL PEAK 19(11Q23.1) WILD-TYPE | 511 | 79 |
P value = 0.0989 (Wilcoxon-test), Q value = 0.23
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 142 | 87.6 (22.8) |
DEL PEAK 19(11Q23.1) MUTATED | 16 | 82.5 (25.4) |
DEL PEAK 19(11Q23.1) WILD-TYPE | 126 | 88.3 (22.5) |
P value = 0.00461 (Fisher's exact test), Q value = 0.017
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 19(11Q23.1) MUTATED | 9 | 30 | 32 |
DEL PEAK 19(11Q23.1) WILD-TYPE | 57 | 498 | 255 |
P value = 0.0125 (logrank test), Q value = 0.041
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 873 | 228 | 0.1 - 194.8 (34.5) |
DEL PEAK 20(13Q12.13) MUTATED | 148 | 56 | 0.2 - 152.0 (37.7) |
DEL PEAK 20(13Q12.13) WILD-TYPE | 725 | 172 | 0.1 - 194.8 (34.2) |
P value = 0.000305 (Wilcoxon-test), Q value = 0.0016
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 875 | 60.1 (12.5) |
DEL PEAK 20(13Q12.13) MUTATED | 150 | 56.2 (15.1) |
DEL PEAK 20(13Q12.13) WILD-TYPE | 725 | 60.9 (11.8) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 20(13Q12.13) MUTATED | 46 | 24 | 49 | 29 |
DEL PEAK 20(13Q12.13) WILD-TYPE | 409 | 80 | 142 | 75 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 20(13Q12.13) MUTATED | 48 | 26 | 67 | 9 |
DEL PEAK 20(13Q12.13) WILD-TYPE | 431 | 101 | 191 | 6 |
P value = 0.00389 (Fisher's exact test), Q value = 0.015
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
DEL PEAK 20(13Q12.13) MUTATED | 68 | 14 | 5 |
DEL PEAK 20(13Q12.13) WILD-TYPE | 254 | 30 | 2 |
P value = 0.00765 (Fisher's exact test), Q value = 0.026
nPatients | FEMALE | MALE |
---|---|---|
ALL | 292 | 589 |
DEL PEAK 20(13Q12.13) MUTATED | 64 | 86 |
DEL PEAK 20(13Q12.13) WILD-TYPE | 228 | 503 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 20(13Q12.13) MUTATED | 44 | 81 | 25 |
DEL PEAK 20(13Q12.13) WILD-TYPE | 22 | 447 | 262 |
P value = 0.0848 (Fisher's exact test), Q value = 0.2
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 15 | 121 | 719 |
DEL PEAK 20(13Q12.13) MUTATED | 0 | 4 | 12 | 129 |
DEL PEAK 20(13Q12.13) WILD-TYPE | 2 | 11 | 109 | 590 |
P value = 0.0169 (logrank test), Q value = 0.053
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 873 | 228 | 0.1 - 194.8 (34.5) |
DEL PEAK 21(13Q14.2) MUTATED | 147 | 55 | 0.2 - 152.0 (37.1) |
DEL PEAK 21(13Q14.2) WILD-TYPE | 726 | 173 | 0.1 - 194.8 (34.3) |
P value = 5.79e-05 (Wilcoxon-test), Q value = 0.00036
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 875 | 60.1 (12.5) |
DEL PEAK 21(13Q14.2) MUTATED | 149 | 55.7 (14.9) |
DEL PEAK 21(13Q14.2) WILD-TYPE | 726 | 61.0 (11.8) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 21(13Q14.2) MUTATED | 46 | 22 | 50 | 30 |
DEL PEAK 21(13Q14.2) WILD-TYPE | 409 | 82 | 141 | 74 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 21(13Q14.2) MUTATED | 48 | 24 | 68 | 9 |
DEL PEAK 21(13Q14.2) WILD-TYPE | 431 | 103 | 190 | 6 |
P value = 0.03 (Fisher's exact test), Q value = 0.087
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
DEL PEAK 21(13Q14.2) MUTATED | 69 | 14 | 4 |
DEL PEAK 21(13Q14.2) WILD-TYPE | 253 | 30 | 3 |
P value = 0.00734 (Fisher's exact test), Q value = 0.026
nPatients | FEMALE | MALE |
---|---|---|
ALL | 292 | 589 |
DEL PEAK 21(13Q14.2) MUTATED | 64 | 85 |
DEL PEAK 21(13Q14.2) WILD-TYPE | 228 | 504 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 21(13Q14.2) MUTATED | 43 | 82 | 24 |
DEL PEAK 21(13Q14.2) WILD-TYPE | 23 | 446 | 263 |
P value = 0.0871 (Fisher's exact test), Q value = 0.2
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 15 | 121 | 719 |
DEL PEAK 21(13Q14.2) MUTATED | 0 | 4 | 12 | 128 |
DEL PEAK 21(13Q14.2) WILD-TYPE | 2 | 11 | 109 | 591 |
P value = 8.11e-10 (logrank test), Q value = 8.9e-08
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 873 | 228 | 0.1 - 194.8 (34.5) |
DEL PEAK 22(14Q31.1) MUTATED | 278 | 112 | 0.1 - 133.7 (32.8) |
DEL PEAK 22(14Q31.1) WILD-TYPE | 595 | 116 | 0.1 - 194.8 (36.4) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 22(14Q31.1) MUTATED | 104 | 31 | 82 | 56 |
DEL PEAK 22(14Q31.1) WILD-TYPE | 351 | 73 | 109 | 48 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 22(14Q31.1) MUTATED | 111 | 41 | 122 | 5 |
DEL PEAK 22(14Q31.1) WILD-TYPE | 368 | 86 | 136 | 10 |
P value = 0.00554 (Fisher's exact test), Q value = 0.02
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
DEL PEAK 22(14Q31.1) MUTATED | 110 | 25 | 4 |
DEL PEAK 22(14Q31.1) WILD-TYPE | 212 | 19 | 3 |
P value = 4.69e-05 (Fisher's exact test), Q value = 3e-04
nPatients | 0 | 1 |
---|---|---|
ALL | 545 | 89 |
DEL PEAK 22(14Q31.1) MUTATED | 185 | 51 |
DEL PEAK 22(14Q31.1) WILD-TYPE | 360 | 38 |
P value = 0.116 (Fisher's exact test), Q value = 0.25
nPatients | NO | YES |
---|---|---|
ALL | 400 | 3 |
DEL PEAK 22(14Q31.1) MUTATED | 84 | 2 |
DEL PEAK 22(14Q31.1) WILD-TYPE | 316 | 1 |
P value = 0.000186 (Wilcoxon-test), Q value = 0.001
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 142 | 87.6 (22.8) |
DEL PEAK 22(14Q31.1) MUTATED | 36 | 71.9 (36.3) |
DEL PEAK 22(14Q31.1) WILD-TYPE | 106 | 92.9 (12.1) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 22(14Q31.1) MUTATED | 3 | 228 | 48 |
DEL PEAK 22(14Q31.1) WILD-TYPE | 63 | 300 | 239 |
P value = 0.00978 (Wilcoxon-test), Q value = 0.033
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 74 | 1973.7 (16.0) |
DEL PEAK 22(14Q31.1) MUTATED | 15 | 1983.5 (14.8) |
DEL PEAK 22(14Q31.1) WILD-TYPE | 59 | 1971.2 (15.4) |
P value = 0.0226 (Fisher's exact test), Q value = 0.068
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 15 | 121 | 719 |
DEL PEAK 22(14Q31.1) MUTATED | 0 | 3 | 26 | 243 |
DEL PEAK 22(14Q31.1) WILD-TYPE | 2 | 12 | 95 | 476 |
P value = 1.94e-05 (logrank test), Q value = 0.00015
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 873 | 228 | 0.1 - 194.8 (34.5) |
DEL PEAK 23(16Q23.3) MUTATED | 36 | 18 | 0.1 - 90.5 (29.2) |
DEL PEAK 23(16Q23.3) WILD-TYPE | 837 | 210 | 0.1 - 194.8 (35.2) |
P value = 0.00482 (Fisher's exact test), Q value = 0.018
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 23(16Q23.3) MUTATED | 11 | 4 | 12 | 10 |
DEL PEAK 23(16Q23.3) WILD-TYPE | 444 | 100 | 179 | 94 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00031
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 23(16Q23.3) MUTATED | 12 | 4 | 16 | 5 |
DEL PEAK 23(16Q23.3) WILD-TYPE | 467 | 123 | 242 | 10 |
P value = 0.00107 (Fisher's exact test), Q value = 0.0049
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
DEL PEAK 23(16Q23.3) MUTATED | 13 | 7 | 2 |
DEL PEAK 23(16Q23.3) WILD-TYPE | 309 | 37 | 5 |
P value = 2.99e-08 (logrank test), Q value = 2.7e-06
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 873 | 228 | 0.1 - 194.8 (34.5) |
DEL PEAK 24(18Q22.2) MUTATED | 152 | 63 | 0.4 - 123.6 (25.7) |
DEL PEAK 24(18Q22.2) WILD-TYPE | 721 | 165 | 0.1 - 194.8 (37.0) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 24(18Q22.2) MUTATED | 51 | 12 | 55 | 32 |
DEL PEAK 24(18Q22.2) WILD-TYPE | 404 | 92 | 136 | 72 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 24(18Q22.2) MUTATED | 55 | 18 | 75 | 7 |
DEL PEAK 24(18Q22.2) WILD-TYPE | 424 | 109 | 183 | 8 |
P value = 0.00397 (Fisher's exact test), Q value = 0.015
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
DEL PEAK 24(18Q22.2) MUTATED | 64 | 16 | 4 |
DEL PEAK 24(18Q22.2) WILD-TYPE | 258 | 28 | 3 |
P value = 0.00896 (Fisher's exact test), Q value = 0.03
nPatients | 0 | 1 |
---|---|---|
ALL | 545 | 89 |
DEL PEAK 24(18Q22.2) MUTATED | 97 | 27 |
DEL PEAK 24(18Q22.2) WILD-TYPE | 448 | 62 |
P value = 0.0557 (Fisher's exact test), Q value = 0.14
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 2 | 15 | 121 | 719 |
DEL PEAK 24(18Q22.2) MUTATED | 0 | 6 | 15 | 131 |
DEL PEAK 24(18Q22.2) WILD-TYPE | 2 | 9 | 106 | 588 |
P value = 0.0901 (Fisher's exact test), Q value = 0.21
nPatients | HISPANIC OR LATINO | NOT HISPANIC OR LATINO |
---|---|---|
ALL | 42 | 621 |
DEL PEAK 24(18Q22.2) MUTATED | 3 | 109 |
DEL PEAK 24(18Q22.2) WILD-TYPE | 39 | 512 |
P value = 5.14e-12 (logrank test), Q value = 9.3e-10
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 873 | 228 | 0.1 - 194.8 (34.5) |
DEL PEAK 25(19P13.3) MUTATED | 43 | 24 | 0.9 - 109.9 (18.2) |
DEL PEAK 25(19P13.3) WILD-TYPE | 830 | 204 | 0.1 - 194.8 (36.5) |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 25(19P13.3) MUTATED | 10 | 1 | 18 | 11 |
DEL PEAK 25(19P13.3) WILD-TYPE | 445 | 103 | 173 | 93 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 25(19P13.3) MUTATED | 12 | 2 | 25 | 4 |
DEL PEAK 25(19P13.3) WILD-TYPE | 467 | 125 | 233 | 11 |
P value = 6e-05 (Fisher's exact test), Q value = 0.00036
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
DEL PEAK 25(19P13.3) MUTATED | 11 | 7 | 3 |
DEL PEAK 25(19P13.3) WILD-TYPE | 311 | 37 | 4 |
P value = 0.069 (Fisher's exact test), Q value = 0.17
nPatients | 0 | 1 |
---|---|---|
ALL | 545 | 89 |
DEL PEAK 25(19P13.3) MUTATED | 18 | 7 |
DEL PEAK 25(19P13.3) WILD-TYPE | 527 | 82 |
P value = 0.00553 (Wilcoxon-test), Q value = 0.02
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 142 | 87.6 (22.8) |
DEL PEAK 25(19P13.3) MUTATED | 12 | 67.5 (39.3) |
DEL PEAK 25(19P13.3) WILD-TYPE | 130 | 89.5 (19.9) |
P value = 0.00964 (Fisher's exact test), Q value = 0.032
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 25(19P13.3) MUTATED | 3 | 17 | 23 |
DEL PEAK 25(19P13.3) WILD-TYPE | 63 | 511 | 264 |
P value = 0.00138 (Wilcoxon-test), Q value = 0.006
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 875 | 60.1 (12.5) |
DEL PEAK 26(XP22.2) MUTATED | 127 | 56.3 (13.8) |
DEL PEAK 26(XP22.2) WILD-TYPE | 748 | 60.8 (12.2) |
P value = 9e-05 (Fisher's exact test), Q value = 0.00052
nPatients | STAGE I | STAGE II | STAGE III | STAGE IV |
---|---|---|---|---|
ALL | 455 | 104 | 191 | 104 |
DEL PEAK 26(XP22.2) MUTATED | 43 | 24 | 39 | 15 |
DEL PEAK 26(XP22.2) WILD-TYPE | 412 | 80 | 152 | 89 |
P value = 1e-04 (Fisher's exact test), Q value = 0.00057
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 479 | 127 | 258 | 15 |
DEL PEAK 26(XP22.2) MUTATED | 46 | 27 | 51 | 3 |
DEL PEAK 26(XP22.2) WILD-TYPE | 433 | 100 | 207 | 12 |
P value = 0.057 (Fisher's exact test), Q value = 0.15
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 322 | 44 | 7 |
DEL PEAK 26(XP22.2) MUTATED | 48 | 12 | 2 |
DEL PEAK 26(XP22.2) WILD-TYPE | 274 | 32 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 8.4e-05
nPatients | KIDNEY CHROMOPHOBE | KIDNEY CLEAR CELL RENAL CARCINOMA | KIDNEY PAPILLARY RENAL CELL CARCINOMA |
---|---|---|---|
ALL | 66 | 528 | 287 |
DEL PEAK 26(XP22.2) MUTATED | 39 | 55 | 33 |
DEL PEAK 26(XP22.2) WILD-TYPE | 27 | 473 | 254 |
-
Copy number data file = all_lesions.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIPAN-TP/19782223/transformed.cor.cli.txt
-
Clinical data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/KIPAN-TP/19775252/KIPAN-TP.merged_data.txt
-
Number of patients = 881
-
Number of significantly focal cnvs = 39
-
Number of selected clinical features = 14
-
Exclude genes that fewer than K tumors have mutations, K = 3
For survival clinical features, the Kaplan-Meier survival curves of tumors with and without gene mutations were plotted and the statistical significance P values were estimated by logrank test (Bland and Altman 2004) using the 'survdiff' function in R
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.