Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_2p23.2	45 (16%)	243	9.9999e-06	5.54e-05	0.0081599	0.0168	0.75951	0.822	0.04876	0.0791	0.098769	0.148	0.95149	0.98	0.28869	0.374	0.17971	0.252	0.39059	0.466	0.079669	0.122
amp_2q32.1	53 (18%)	235	9.9999e-06	5.54e-05	0.03187	0.0552	0.83819	0.89	0.11554	0.168	0.34936	0.431	0.93768	0.972	0.38118	0.458	0.34884	0.431	0.97554	0.995	0.33656	0.422
amp_3q27.1	100 (35%)	188	9.9999e-06	5.54e-05	0.03322	0.0566	0.30166	0.388	0.00108	0.00316	2e-05	9.84e-05	0.01751	0.0329	0.058589	0.0936	0.00179	0.00487	0.70264	0.772	0.0058899	0.0129
amp_5q35.2	37 (13%)	251	9.9999e-06	5.54e-05	0.00021	0.000748	0.25414	0.338	0.87349	0.923	0.00277	0.00676	9.9999e-06	5.54e-05	0.053239	0.0855	0.02097	0.0385	0.434	0.51	0.059379	0.094
amp_7q31.2	177 (61%)	111	9.9999e-06	5.54e-05	9.9999e-06	5.54e-05	0.01994	0.037	3e-05	0.000137	9.9999e-06	5.54e-05	9.9999e-06	5.54e-05	0.0408	0.068	0.00060999	0.00195	5e-05	0.000209	9.9999e-06	5.54e-05
amp_17q25.2	201 (70%)	87	9.9999e-06	5.54e-05	9.9999e-06	5.54e-05	0.0034	0.00798	7.9999e-05	0.000322	9.9999e-06	5.54e-05	9.9999e-06	5.54e-05	0.071119	0.111	0.01134	0.0225	0.00192	0.00513	5e-05	0.000209
amp_19p13.2	31 (11%)	257	9.9999e-06	5.54e-05	0.0052899	0.0119	0.0069099	0.0146	0.00152	0.00425	0.00047	0.00157	0.00131	0.0038	0.1468	0.208	0.34832	0.431	0.059449	0.094	0.01448	0.0277
del_1p36.31	55 (19%)	233	9.9999e-06	5.54e-05	9.9999e-06	5.54e-05	0.55177	0.627	0.12968	0.185	9.9999e-06	5.54e-05	9.9999e-06	5.54e-05	0.87694	0.923	0.87797	0.923	0.02363	0.0423	0.0022	0.00573
del_2p12	8 (3%)	280	0.086899	0.133	0.0079599	0.0165	0.1684	0.237	0.6682	0.747	0.00322	0.00774	0.10843	0.159	0.22155	0.303	0.26827	0.351	0.69425	0.769	1	1
del_2q22.1	10 (3%)	278	0.00337	0.00797	0.0059599	0.0129	0.0064499	0.0138	0.71712	0.783	8.9999e-05	0.000353	0.0073099	0.0152	0.66989	0.747	1	1	0.19655	0.273	0.52371	0.597
del_2q37.3	12 (4%)	276	0.096409	0.145	0.00254	0.00645	0.00069999	0.00221	0.21263	0.293	0.01511	0.0287	0.00257	0.00648	0.13171	0.187	0.29361	0.379	0.04977	0.0804	0.23143	0.312
del_3p22.1	25 (9%)	263	9.9999e-06	5.54e-05	9.9999e-06	5.54e-05	0.38504	0.461	0.02939	0.0518	9.9999e-06	5.54e-05	9.9999e-06	5.54e-05	0.12611	0.181	0.04456	0.0727	0.02487	0.0443	8.9999e-05	0.000353
del_4q34.3	32 (11%)	256	9.9999e-06	5.54e-05	9.9999e-06	5.54e-05	0.27485	0.358	0.01393	0.0268	9.9999e-06	5.54e-05	9.9999e-06	5.54e-05	0.25881	0.342	0.46924	0.545	0.0092399	0.0187	2e-05	9.84e-05
del_5p15.33	13 (5%)	275	0.26031	0.342	0.00232	0.00599	0.68072	0.756	0.078619	0.121	0.03087	0.0538	0.00096999	0.00292	0.43295	0.51	0.2264	0.307	0.33333	0.42	0.0056899	0.0126
del_5q35.2	11 (4%)	277	0.0272	0.0482	0.00021	0.000748	0.033	0.0565	0.00023	0.000792	0.00049	0.00162	2e-05	9.84e-05	0.00364	0.00848	0.00076999	0.00239	0.00164	0.00454	9.9999e-06	5.54e-05
del_6p12.3	26 (9%)	262	9.9999e-06	5.54e-05	0.00056999	0.00184	1	1	0.23609	0.317	0.00133	0.00382	0.00096999	0.00292	0.12326	0.178	0.59044	0.668	0.25938	0.342	0.20102	0.278
del_6q22.31	29 (10%)	259	9.9999e-06	5.54e-05	0.00052999	0.00173	0.88856	0.93	0.00457	0.0105	0.00016	0.000598	2e-05	9.84e-05	0.3757	0.455	0.70455	0.772	0.01298	0.0253	0.072869	0.114
del_6q25.3	32 (11%)	256	9.9999e-06	5.54e-05	4e-05	0.000175	0.69913	0.771	0.01975	0.0369	9.9999e-06	5.54e-05	2e-05	9.84e-05	0.3293	0.418	1	1	0.04061	0.068	0.10836	0.159
del_9p21.3	40 (14%)	248	9.9999e-06	5.54e-05	9.9999e-06	5.54e-05	0.36828	0.449	0.00104	0.00307	9.9999e-06	5.54e-05	9.9999e-06	5.54e-05	0.00023	0.000792	0.01248	0.0245	0.00013	0.000491	3e-05	0.000137
del_10q21.1	19 (7%)	269	9.9999e-06	5.54e-05	9.9999e-06	5.54e-05	0.76089	0.822	0.04334	0.0711	6.9999e-05	0.000289	0.00070999	0.00222	0.79616	0.851	0.79237	0.851	0.03204	0.0552	0.02019	0.0373
del_11q22.3	31 (11%)	257	9.9999e-06	5.54e-05	0.00022	0.000775	0.63747	0.716	0.10108	0.151	7.9999e-05	0.000322	0.00272	0.00675	0.23769	0.318	0.43113	0.51	0.00238	0.0061	0.0054799	0.0122
del_11q23.3	29 (10%)	259	9.9999e-06	5.54e-05	0.00011	0.000421	0.33812	0.423	0.04138	0.0686	3e-05	0.000137	0.00137	0.0039	0.3305	0.418	0.37295	0.453	0.0058699	0.0129	0.01134	0.0225
del_14q11.2	51 (18%)	237	9.9999e-06	5.54e-05	0.00198	0.00525	0.063809	0.1	0.00478	0.0109	2e-05	9.84e-05	9.9999e-06	5.54e-05	0.49317	0.566	0.96049	0.986	0.02272	0.0412	0.01678	0.0317
del_14q24.2	50 (17%)	238	9.9999e-06	5.54e-05	0.00021	0.000748	0.02322	0.0418	0.0026	0.0065	9.9999e-06	5.54e-05	9.9999e-06	5.54e-05	0.4913	0.566	1	1	0.0068399	0.0145	0.00442	0.0102
del_15q13.3	35 (12%)	253	9.9999e-06	5.54e-05	0.00024	0.000818	0.11861	0.172	0.03	0.0525	3e-05	0.000137	9.9999e-06	5.54e-05	0.078039	0.121	0.10921	0.16	0.04182	0.069	0.00276	0.00676
del_16q24.1	12 (4%)	276	0.00029	0.000977	0.00011	0.000421	0.22152	0.303	0.092729	0.14	0.00295	0.00714	0.00183	0.00493	1	1	0.3128	0.399	0.01012	0.0204	0.03664	0.0621
del_19p13.3	23 (8%)	265	4e-05	0.000175	0.01216	0.024	0.89073	0.93	0.81038	0.863	0.0087699	0.0179	0.00488	0.011	0.3545	0.434	0.19525	0.273	0.087829	0.133	0.01363	0.0264
del_19q13.42	19 (7%)	269	4e-05	0.000175	0.02191	0.04	0.79491	0.851	0.41204	0.489	0.00151	0.00425	0.00329	0.00785	0.50451	0.577	0.47241	0.546	0.22674	0.307	0.30515	0.391
del_22q12.2	63 (22%)	225	9.9999e-06	5.54e-05	9.9999e-06	5.54e-05	0.43956	0.514	0.0064099	0.0138	9.9999e-06	5.54e-05	9.9999e-06	5.54e-05	0.96745	0.99	0.74577	0.811	0.03798	0.064	0.00215	0.00565
del_xp11.4	34 (12%)	254	9.9999e-06	5.54e-05	2e-05	9.84e-05	0.35108	0.432	0.00103	0.00307	9.9999e-06	5.54e-05	9.9999e-06	5.54e-05	0.4632	0.54	0.37969	0.458	0.0017	0.00466	3e-05	0.000137
del_xq28	28 (10%)	260	9.9999e-06	5.54e-05	5e-05	0.000209	0.95151	0.98	0.10644	0.158	9.9999e-06	5.54e-05	0.00018	0.000664	0.59596	0.672	0.93664	0.972	0.0071799	0.015	0.00090999	0.00279