Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1p33	7 (4%)	184	0.00049	0.00294	0.00246	0.00757	0.12463	0.184	0.13152	0.19	0.0094599	0.0214	0.04751	0.0838
amp_1q43	7 (4%)	184	0.00338	0.00966	0.00237	0.00757	0.37349	0.444	0.03596	0.0682	0.13896	0.196	0.01509	0.0323
amp_11q23.3	17 (9%)	174	9.9999e-06	0.000109	0.00217	0.00723	0.37124	0.444	0.20121	0.262	0.74675	0.8	0.18447	0.249
amp_13q31.3	7 (4%)	184	0.081329	0.125	0.00245	0.00757	0.067369	0.108	0.03696	0.0682	0.73567	0.795	0.057059	0.0964
amp_19p13.2	6 (3%)	185	0.0032	0.0096	0.25361	0.314	0.85593	0.901	0.63251	0.696	0.89325	0.932	1	1
amp_20q11.21	3 (2%)	188	0.0065599	0.0158	0.2114	0.273	NA	NA	NA	NA	NA	NA	NA	NA
amp_21q22.2	14 (7%)	177	9.9999e-06	0.000109	0.00053999	0.00309	0.00335	0.00966	0.03651	0.0682	0.00164	0.00579	0.066729	0.108
del_3p13	8 (4%)	183	0.00061999	0.00338	0.04574	0.0819	0.065989	0.108	0.2351	0.294	0.03683	0.0682	0.04838	0.0841
del_5q31.2	18 (9%)	173	9.9999e-06	0.000109	9.9999e-06	0.000109	0.0053499	0.014	0.00082999	0.00383	0.00068999	0.00345	0.00119	0.00468
del_7p12.1	16 (8%)	175	0.00021	0.00157	0.00037	0.00234	0.00183	0.00627	9.9999e-06	0.000109	0.0056799	0.0145	0.0068399	0.0161
del_7q34	24 (13%)	167	9.9999e-06	0.000109	0.00011	0.000943	0.02299	0.0468	9.9999e-06	0.000109	0.00086999	0.00386	0.00067999	0.00345
del_7q34	24 (13%)	167	9.9999e-06	0.000109	0.00012	0.00096	0.02171	0.0457	9.9999e-06	0.000109	0.00089999	0.00386	0.00071999	0.00346
del_9q21.32	5 (3%)	186	0.23107	0.292	0.46494	0.536	0.17533	0.242	0.60228	0.669	0.18297	0.249	0.106	0.159
del_12p13.2	10 (5%)	181	3e-05	0.000277	0.00158	0.00575	0.19636	0.259	0.073169	0.114	0.069549	0.11	0.0101	0.0224
del_12q21.33	3 (2%)	188	0.00121	0.00468	0.7014	0.765	0.1877	0.25	0.58618	0.659	0.0085999	0.0198	0.0061099	0.0153
del_16q23.1	9 (5%)	182	0.00152	0.0057	0.02257	0.0467	0.3309	0.403	0.49278	0.563	0.04507	0.0819	0.064999	0.108
del_17p13.2	15 (8%)	176	9.9999e-06	0.000109	0.00025	0.00167	0.01111	0.0242	0.00023	0.00162	0.086009	0.131	0.0012	0.00468
del_17q11.2	13 (7%)	178	9.9999e-06	0.000109	0.0051199	0.0137	0.15562	0.217	0.0065799	0.0158	0.13542	0.193	0.00383	0.0106
del_18p11.21	9 (5%)	182	2e-05	2e-04	0.00387	0.0106	0.38053	0.448	0.33265	0.403	0.21398	0.273	0.03178	0.0625
del_20q13.13	4 (2%)	187	0.029	0.058	0.055999	0.096	0.78535	0.834	0.58803	0.659	0.12544	0.184	0.41021	0.478