This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 82 arm-level events and 14 molecular subtypes across 579 patients, 252 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p gain cnv correlated to 'CN_CNMF'.
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1q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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2p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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2q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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3p gain cnv correlated to 'CN_CNMF'.
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3q gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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4p gain cnv correlated to 'MIR_CNMF', 'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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4q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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5p gain cnv correlated to 'CN_CNMF'.
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6p gain cnv correlated to 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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6q gain cnv correlated to 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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7p gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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7q gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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8p gain cnv correlated to 'MRNA_CHIERARCHICAL'.
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8q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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9p gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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10p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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10q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'MRNASEQ_CNMF'.
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11p gain cnv correlated to 'METHLYATION_CNMF' and 'RPPA_CNMF'.
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11q gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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12p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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12q gain cnv correlated to 'MRNA_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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13q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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16p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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16q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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17q gain cnv correlated to 'MRNA_CHIERARCHICAL' and 'MIR_CHIERARCHICAL'.
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18p gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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18q gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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19p gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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19q gain cnv correlated to 'CN_CNMF'.
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20p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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20q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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21q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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xp gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.
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xq gain cnv correlated to 'CN_CNMF'.
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1p loss cnv correlated to 'MRNA_CNMF' and 'MRNA_CHIERARCHICAL'.
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1q loss cnv correlated to 'MRNA_CHIERARCHICAL'.
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2p loss cnv correlated to 'MRNA_CHIERARCHICAL'.
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3p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
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3q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4p loss cnv correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.
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4q loss cnv correlated to 'CN_CNMF'.
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5p loss cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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5q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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6p loss cnv correlated to 'MRNA_CHIERARCHICAL'.
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6q loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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8p loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
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8q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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9p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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9q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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10q loss cnv correlated to 'MIR_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
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11p loss cnv correlated to 'MRNA_CHIERARCHICAL' and 'METHLYATION_CNMF'.
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11q loss cnv correlated to 'CN_CNMF'.
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12p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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12q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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13q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'METHLYATION_CNMF', 'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.
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14q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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15q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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16p loss cnv correlated to 'MIR_CNMF' and 'MIRSEQ_CNMF'.
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16q loss cnv correlated to 'MIR_CNMF' and 'CN_CNMF'.
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17q loss cnv correlated to 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
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18p loss cnv correlated to 'MIR_CHIERARCHICAL' and 'METHLYATION_CNMF'.
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18q loss cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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19p loss cnv correlated to 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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19q loss cnv correlated to 'MIR_CHIERARCHICAL', 'CN_CNMF', 'RPPA_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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20p loss cnv correlated to 'MIRSEQ_CNMF'.
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20q loss cnv correlated to 'MIR_CNMF'.
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22q loss cnv correlated to 'MRNA_CNMF', 'MIR_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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xp loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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xq loss cnv correlated to 'CN_CNMF'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
MIR CNMF |
MIR CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
15q loss | 280 (48%) | 299 |
0.00056 (0.0102) |
0.017 (0.106) |
0.00011 (0.00301) |
0.00031 (0.00684) |
1e-05 (0.000383) |
1e-05 (0.000383) |
0.147 (0.412) |
0.918 (1) |
0.00601 (0.0527) |
0.272 (0.559) |
0.00832 (0.0636) |
0.00062 (0.0108) |
0.0427 (0.199) |
0.624 (0.849) |
2p gain | 186 (32%) | 393 |
1e-05 (0.000383) |
1e-05 (0.000383) |
0.887 (0.987) |
0.00061 (0.0108) |
1e-05 (0.000383) |
1e-05 (0.000383) |
0.00414 (0.0417) |
0.431 (0.727) |
1e-05 (0.000383) |
1e-05 (0.000383) |
0.821 (0.951) |
0.0256 (0.142) |
0.675 (0.873) |
0.612 (0.844) |
2q gain | 155 (27%) | 424 |
0.00053 (0.00981) |
4e-05 (0.00135) |
1 (1.00) |
0.00791 (0.0622) |
1e-05 (0.000383) |
0.00022 (0.00515) |
0.046 (0.211) |
0.9 (0.991) |
0.0001 (0.00287) |
0.00017 (0.00434) |
0.609 (0.842) |
0.00601 (0.0527) |
1 (1.00) |
0.747 (0.909) |
12p gain | 255 (44%) | 324 |
3e-05 (0.00104) |
0.00151 (0.0197) |
0.741 (0.904) |
0.00115 (0.0161) |
1e-05 (0.000383) |
1e-05 (0.000383) |
0.108 (0.354) |
0.76 (0.916) |
0.00046 (0.0088) |
0.0007 (0.0115) |
0.229 (0.523) |
0.0002 (0.00489) |
0.415 (0.712) |
0.254 (0.544) |
5q loss | 223 (39%) | 356 |
0.00033 (0.00715) |
0.00172 (0.0212) |
0.709 (0.89) |
0.0131 (0.0894) |
0.00044 (0.00856) |
1e-05 (0.000383) |
0.0808 (0.299) |
0.462 (0.758) |
0.00102 (0.0148) |
0.00165 (0.0206) |
0.621 (0.849) |
0.00742 (0.06) |
0.378 (0.686) |
0.718 (0.893) |
12q gain | 177 (31%) | 402 |
0.00448 (0.0429) |
0.0554 (0.242) |
0.626 (0.849) |
0.034 (0.17) |
1e-05 (0.000383) |
1e-05 (0.000383) |
0.0724 (0.282) |
0.599 (0.837) |
0.0221 (0.128) |
0.0219 (0.128) |
0.103 (0.346) |
0.011 (0.0806) |
0.0743 (0.285) |
0.291 (0.584) |
20p gain | 289 (50%) | 290 |
0.00129 (0.0176) |
0.00111 (0.0157) |
0.724 (0.897) |
0.00042 (0.00846) |
1e-05 (0.000383) |
1e-05 (0.000383) |
0.353 (0.659) |
0.356 (0.662) |
0.0131 (0.0894) |
0.0705 (0.28) |
0.224 (0.522) |
0.00366 (0.0382) |
0.391 (0.692) |
0.522 (0.789) |
20q gain | 328 (57%) | 251 |
1e-05 (0.000383) |
0.00044 (0.00856) |
0.672 (0.871) |
0.00013 (0.00347) |
1e-05 (0.000383) |
1e-05 (0.000383) |
0.504 (0.773) |
0.129 (0.384) |
0.0743 (0.285) |
0.00638 (0.0535) |
0.257 (0.547) |
0.0048 (0.0444) |
1 (1.00) |
0.495 (0.769) |
3p loss | 95 (16%) | 484 |
0.0226 (0.131) |
0.00088 (0.0137) |
0.816 (0.951) |
0.00538 (0.0483) |
0.00038 (0.00793) |
0.00268 (0.0304) |
0.13 (0.386) |
0.0296 (0.157) |
0.0921 (0.323) |
0.00144 (0.019) |
0.123 (0.373) |
0.0896 (0.315) |
1 (1.00) |
0.123 (0.373) |
3q loss | 43 (7%) | 536 |
0.013 (0.0894) |
0.0389 (0.185) |
0.286 (0.578) |
0.056 (0.242) |
0.0304 (0.159) |
0.00325 (0.0349) |
0.264 (0.555) |
0.126 (0.376) |
0.0643 (0.263) |
0.035 (0.173) |
0.307 (0.6) |
0.00102 (0.0148) |
0.594 (0.833) |
0.033 (0.168) |
9q loss | 286 (49%) | 293 |
0.00689 (0.0567) |
0.0138 (0.0938) |
0.22 (0.519) |
0.034 (0.17) |
1e-05 (0.000383) |
0.00612 (0.0528) |
0.689 (0.881) |
0.56 (0.82) |
0.00723 (0.0589) |
0.00087 (0.0137) |
0.223 (0.521) |
0.0579 (0.246) |
1 (1.00) |
0.623 (0.849) |
22q loss | 430 (74%) | 149 |
0.00227 (0.0269) |
0.0926 (0.323) |
0.036 (0.177) |
0.128 (0.38) |
5e-05 (0.00159) |
0.00183 (0.0223) |
0.0154 (0.0998) |
0.0622 (0.258) |
0.054 (0.237) |
0.0144 (0.0958) |
0.041 (0.194) |
0.575 (0.827) |
0.135 (0.394) |
0.105 (0.35) |
10p gain | 188 (32%) | 391 |
0.00435 (0.0424) |
0.0206 (0.123) |
0.677 (0.874) |
0.375 (0.684) |
1e-05 (0.000383) |
0.00015 (0.00391) |
0.775 (0.927) |
0.884 (0.985) |
0.0016 (0.0203) |
0.113 (0.36) |
0.563 (0.823) |
0.00057 (0.0102) |
1 (1.00) |
0.94 (1.00) |
13q gain | 60 (10%) | 519 |
0.00782 (0.0619) |
0.00029 (0.00653) |
0.587 (0.833) |
0.0246 (0.137) |
8e-05 (0.00242) |
1e-05 (0.000383) |
0.285 (0.578) |
0.904 (0.991) |
0.0338 (0.17) |
0.114 (0.363) |
0.149 (0.413) |
0.0994 (0.339) |
0.455 (0.748) |
|
8q loss | 90 (16%) | 489 |
0.00771 (0.0618) |
0.00549 (0.0489) |
0.52 (0.787) |
0.261 (0.55) |
0.00101 (0.0148) |
0.0347 (0.173) |
0.151 (0.414) |
0.388 (0.69) |
0.00273 (0.0304) |
0.00092 (0.0141) |
0.664 (0.867) |
0.125 (0.376) |
1 (1.00) |
0.901 (0.991) |
12p loss | 79 (14%) | 500 |
0.0028 (0.0309) |
0.0107 (0.0786) |
0.658 (0.862) |
0.00691 (0.0567) |
0.00101 (0.0148) |
0.252 (0.544) |
0.705 (0.889) |
0.552 (0.817) |
0.472 (0.758) |
0.166 (0.444) |
0.00958 (0.071) |
0.00637 (0.0535) |
0.293 (0.587) |
0.725 (0.897) |
13q loss | 310 (54%) | 269 |
0.029 (0.156) |
0.00842 (0.0636) |
0.803 (0.945) |
0.0166 (0.104) |
0.0513 (0.23) |
2e-05 (0.000717) |
0.0111 (0.0809) |
0.0139 (0.0938) |
0.165 (0.442) |
0.277 (0.566) |
0.217 (0.519) |
0.532 (0.799) |
0.666 (0.867) |
0.151 (0.414) |
6p gain | 170 (29%) | 409 |
0.513 (0.781) |
0.00425 (0.0424) |
0.903 (0.991) |
0.0127 (0.0886) |
1e-05 (0.000383) |
0.00011 (0.00301) |
0.968 (1.00) |
0.627 (0.849) |
0.15 (0.414) |
0.00079 (0.0128) |
0.36 (0.668) |
0.0659 (0.268) |
0.415 (0.712) |
0.762 (0.918) |
6q gain | 97 (17%) | 482 |
0.656 (0.861) |
0.0512 (0.23) |
0.823 (0.951) |
0.0211 (0.125) |
1e-05 (0.000383) |
1e-05 (0.000383) |
0.818 (0.951) |
0.6 (0.837) |
0.125 (0.376) |
0.0342 (0.171) |
0.199 (0.493) |
0.0297 (0.157) |
0.381 (0.686) |
0.576 (0.827) |
8q gain | 242 (42%) | 337 |
0.0212 (0.125) |
0.00068 (0.0113) |
0.08 (0.297) |
0.142 (0.406) |
0.26 (0.549) |
0.447 (0.745) |
0.802 (0.945) |
0.651 (0.861) |
0.00622 (0.0532) |
0.0151 (0.0989) |
0.56 (0.82) |
0.864 (0.975) |
0.031 (0.16) |
0.691 (0.881) |
5p loss | 133 (23%) | 446 |
0.0746 (0.285) |
0.0314 (0.162) |
0.543 (0.809) |
0.0889 (0.315) |
0.0121 (0.085) |
0.00661 (0.055) |
0.101 (0.343) |
0.232 (0.524) |
0.00065 (0.0111) |
0.00161 (0.0203) |
0.574 (0.827) |
0.0504 (0.229) |
1 (1.00) |
0.907 (0.991) |
12q loss | 105 (18%) | 474 |
0.0824 (0.302) |
0.0836 (0.303) |
0.729 (0.897) |
0.171 (0.453) |
0.023 (0.132) |
0.228 (0.523) |
0.0951 (0.33) |
0.653 (0.861) |
0.172 (0.454) |
0.0266 (0.145) |
0.0265 (0.145) |
0.0305 (0.159) |
0.135 (0.394) |
0.0398 (0.189) |
19p loss | 185 (32%) | 394 |
0.979 (1.00) |
0.452 (0.748) |
0.331 (0.632) |
0.0437 (0.203) |
0.00525 (0.0478) |
0.019 (0.116) |
0.0149 (0.0982) |
0.061 (0.255) |
0.759 (0.916) |
0.254 (0.544) |
0.679 (0.874) |
0.118 (0.369) |
0.0115 (0.083) |
0.125 (0.376) |
10q gain | 111 (19%) | 468 |
0.00392 (0.0398) |
0.00939 (0.0705) |
0.241 (0.535) |
0.118 (0.369) |
0.00387 (0.0397) |
0.0922 (0.323) |
0.621 (0.849) |
0.313 (0.606) |
0.016 (0.102) |
0.0564 (0.242) |
0.729 (0.897) |
0.246 (0.539) |
0.646 (0.86) |
0.657 (0.861) |
16p gain | 59 (10%) | 520 |
0.00253 (0.029) |
0.00433 (0.0424) |
0.406 (0.706) |
0.177 (0.465) |
0.0299 (0.157) |
0.0174 (0.108) |
0.631 (0.853) |
0.144 (0.408) |
0.166 (0.444) |
0.862 (0.974) |
0.125 (0.376) |
0.0795 (0.296) |
0.481 (0.758) |
|
16q gain | 31 (5%) | 548 |
0.00066 (0.0111) |
0.0444 (0.205) |
0.158 (0.428) |
0.22 (0.519) |
0.268 (0.559) |
0.00346 (0.0368) |
0.858 (0.972) |
0.171 (0.454) |
0.064 (0.262) |
0.339 (0.641) |
0.00084 (0.0134) |
0.106 (0.352) |
1 (1.00) |
|
21q gain | 109 (19%) | 470 |
0.29 (0.583) |
0.881 (0.985) |
0.96 (1.00) |
0.581 (0.83) |
0.00139 (0.0188) |
0.0163 (0.104) |
0.179 (0.467) |
0.383 (0.688) |
0.207 (0.506) |
0.148 (0.412) |
0.024 (0.135) |
0.0441 (0.204) |
1 (1.00) |
|
14q loss | 215 (37%) | 364 |
0.251 (0.544) |
0.191 (0.483) |
0.968 (1.00) |
0.399 (0.701) |
1e-05 (0.000383) |
0.0036 (0.0379) |
0.857 (0.972) |
0.77 (0.923) |
0.00775 (0.0618) |
0.0001 (0.00287) |
0.857 (0.972) |
0.399 (0.701) |
0.381 (0.686) |
0.225 (0.522) |
17q loss | 383 (66%) | 196 |
0.0845 (0.305) |
0.0282 (0.152) |
0.0153 (0.0997) |
0.0118 (0.084) |
0.943 (1.00) |
0.559 (0.82) |
0.691 (0.881) |
0.277 (0.566) |
0.031 (0.16) |
0.142 (0.406) |
0.0782 (0.294) |
0.715 (0.892) |
0.624 (0.849) |
0.276 (0.566) |
19q loss | 178 (31%) | 401 |
0.696 (0.884) |
0.252 (0.544) |
0.253 (0.544) |
0.0164 (0.104) |
0.00461 (0.0431) |
0.0737 (0.285) |
0.0192 (0.116) |
0.227 (0.523) |
0.729 (0.897) |
0.396 (0.7) |
0.301 (0.593) |
0.053 (0.235) |
0.00535 (0.0483) |
0.426 (0.723) |
1q gain | 221 (38%) | 358 |
0.833 (0.959) |
0.271 (0.559) |
0.706 (0.89) |
0.224 (0.522) |
1e-05 (0.000383) |
0.00842 (0.0636) |
0.406 (0.706) |
0.668 (0.869) |
0.047 (0.215) |
0.075 (0.285) |
0.229 (0.523) |
0.108 (0.354) |
0.198 (0.493) |
0.56 (0.82) |
4p gain | 60 (10%) | 519 |
0.246 (0.539) |
0.19 (0.483) |
0.0049 (0.045) |
0.0601 (0.253) |
0.016 (0.102) |
0.12 (0.37) |
0.538 (0.806) |
0.467 (0.758) |
0.78 (0.928) |
0.44 (0.737) |
0.324 (0.621) |
0.0179 (0.11) |
1 (1.00) |
0.575 (0.827) |
4q gain | 32 (6%) | 547 |
0.496 (0.769) |
0.765 (0.919) |
0.212 (0.514) |
0.0783 (0.294) |
0.00436 (0.0424) |
0.00818 (0.0636) |
0.711 (0.89) |
0.0252 (0.14) |
0.703 (0.888) |
0.466 (0.758) |
0.229 (0.523) |
0.0636 (0.262) |
||
9p loss | 262 (45%) | 317 |
0.00285 (0.0309) |
0.00607 (0.0528) |
0.509 (0.777) |
0.185 (0.475) |
0.016 (0.102) |
0.072 (0.281) |
0.905 (0.991) |
0.298 (0.588) |
0.106 (0.352) |
0.0597 (0.252) |
0.0557 (0.242) |
0.257 (0.548) |
0.391 (0.692) |
0.152 (0.416) |
10q loss | 124 (21%) | 455 |
0.938 (1.00) |
0.826 (0.953) |
0.00462 (0.0431) |
0.297 (0.588) |
0.0232 (0.132) |
0.00197 (0.0236) |
0.644 (0.86) |
0.727 (0.897) |
0.652 (0.861) |
0.842 (0.963) |
0.696 (0.884) |
0.371 (0.678) |
0.381 (0.686) |
0.698 (0.886) |
xp loss | 325 (56%) | 254 |
0.143 (0.408) |
0.251 (0.544) |
0.204 (0.502) |
0.664 (0.867) |
0.00626 (0.0532) |
0.0424 (0.198) |
0.464 (0.758) |
0.021 (0.125) |
0.754 (0.916) |
0.976 (1.00) |
0.212 (0.514) |
0.457 (0.75) |
1 (1.00) |
0.306 (0.599) |
3q gain | 275 (47%) | 304 |
0.935 (1.00) |
0.868 (0.976) |
0.345 (0.651) |
0.432 (0.728) |
1e-05 (0.000383) |
0.0172 (0.107) |
0.991 (1.00) |
0.209 (0.51) |
0.271 (0.559) |
0.477 (0.758) |
0.255 (0.546) |
0.0891 (0.315) |
1 (1.00) |
0.633 (0.853) |
7p gain | 181 (31%) | 398 |
0.59 (0.833) |
0.475 (0.758) |
0.0832 (0.302) |
0.107 (0.354) |
1e-05 (0.000383) |
0.0002 (0.00489) |
0.9 (0.991) |
0.155 (0.422) |
0.906 (0.991) |
0.824 (0.952) |
0.965 (1.00) |
0.12 (0.37) |
1 (1.00) |
0.765 (0.919) |
7q gain | 203 (35%) | 376 |
0.649 (0.861) |
0.0827 (0.302) |
0.297 (0.588) |
0.38 (0.686) |
1e-05 (0.000383) |
0.00141 (0.0188) |
0.553 (0.817) |
0.26 (0.549) |
0.729 (0.897) |
0.986 (1.00) |
0.151 (0.414) |
0.632 (0.853) |
0.646 (0.86) |
0.369 (0.678) |
9p gain | 92 (16%) | 487 |
0.113 (0.36) |
0.423 (0.719) |
0.235 (0.528) |
0.865 (0.976) |
0.00273 (0.0304) |
0.00829 (0.0636) |
0.541 (0.807) |
0.576 (0.827) |
0.733 (0.9) |
0.714 (0.892) |
0.187 (0.478) |
0.187 (0.478) |
0.624 (0.849) |
0.607 (0.842) |
11p gain | 77 (13%) | 502 |
0.713 (0.891) |
0.101 (0.343) |
0.638 (0.857) |
0.47 (0.758) |
0.134 (0.394) |
0.014 (0.0938) |
0.00823 (0.0636) |
0.286 (0.578) |
0.603 (0.84) |
0.277 (0.566) |
0.561 (0.82) |
0.836 (0.959) |
1 (1.00) |
|
11q gain | 115 (20%) | 464 |
0.391 (0.692) |
0.25 (0.544) |
0.884 (0.985) |
0.18 (0.467) |
0.00441 (0.0425) |
0.00197 (0.0236) |
0.192 (0.485) |
0.245 (0.539) |
0.523 (0.789) |
0.247 (0.54) |
0.41 (0.709) |
0.78 (0.928) |
0.323 (0.621) |
0.105 (0.35) |
17q gain | 47 (8%) | 532 |
0.42 (0.716) |
0.0369 (0.178) |
0.759 (0.916) |
0.0371 (0.178) |
0.526 (0.793) |
0.388 (0.69) |
0.779 (0.928) |
0.814 (0.951) |
1 (1.00) |
0.268 (0.559) |
0.827 (0.953) |
0.878 (0.983) |
1 (1.00) |
|
18p gain | 120 (21%) | 459 |
0.182 (0.468) |
0.0999 (0.34) |
0.872 (0.979) |
0.386 (0.689) |
0.00127 (0.0176) |
0.00029 (0.00653) |
0.0708 (0.28) |
0.932 (1.00) |
0.0874 (0.312) |
0.835 (0.959) |
0.354 (0.66) |
0.235 (0.528) |
0.646 (0.86) |
0.814 (0.951) |
18q gain | 72 (12%) | 507 |
0.646 (0.86) |
0.163 (0.438) |
0.227 (0.523) |
0.387 (0.69) |
0.0232 (0.132) |
0.0243 (0.136) |
1 (1.00) |
0.916 (0.999) |
0.621 (0.849) |
0.585 (0.833) |
0.108 (0.354) |
0.194 (0.49) |
1 (1.00) |
1 (1.00) |
19p gain | 171 (30%) | 408 |
0.0767 (0.291) |
0.454 (0.748) |
0.52 (0.787) |
0.116 (0.367) |
2e-05 (0.000717) |
0.026 (0.143) |
0.266 (0.559) |
0.802 (0.945) |
0.247 (0.54) |
0.178 (0.465) |
0.27 (0.559) |
0.313 (0.606) |
1 (1.00) |
0.746 (0.909) |
xp gain | 78 (13%) | 501 |
0.45 (0.746) |
0.636 (0.856) |
0.901 (0.991) |
0.594 (0.833) |
0.0294 (0.157) |
0.492 (0.767) |
0.766 (0.919) |
0.317 (0.611) |
0.93 (1.00) |
0.974 (1.00) |
0.0388 (0.185) |
0.0675 (0.274) |
1 (1.00) |
|
1p loss | 65 (11%) | 514 |
0.0324 (0.166) |
0.00034 (0.00723) |
0.465 (0.758) |
0.197 (0.492) |
0.469 (0.758) |
0.286 (0.578) |
0.0718 (0.281) |
0.468 (0.758) |
0.86 (0.973) |
0.259 (0.549) |
0.448 (0.745) |
0.309 (0.601) |
1 (1.00) |
|
4p loss | 316 (55%) | 263 |
0.368 (0.677) |
0.022 (0.128) |
0.282 (0.573) |
0.613 (0.845) |
0.00454 (0.0431) |
0.485 (0.763) |
0.144 (0.408) |
0.83 (0.956) |
0.447 (0.745) |
0.919 (1) |
0.118 (0.369) |
0.196 (0.491) |
1 (1.00) |
0.625 (0.849) |
6q loss | 242 (42%) | 337 |
0.963 (1.00) |
0.0748 (0.285) |
0.435 (0.732) |
0.0975 (0.336) |
0.0339 (0.17) |
0.0713 (0.281) |
0.679 (0.874) |
0.802 (0.945) |
0.0976 (0.336) |
0.0118 (0.084) |
0.791 (0.938) |
0.57 (0.827) |
0.594 (0.833) |
0.904 (0.991) |
8p loss | 277 (48%) | 302 |
0.74 (0.904) |
0.893 (0.991) |
0.237 (0.529) |
0.947 (1.00) |
0.00246 (0.0288) |
0.11 (0.358) |
0.051 (0.23) |
0.475 (0.758) |
0.809 (0.949) |
0.707 (0.89) |
0.701 (0.886) |
0.0371 (0.178) |
1 (1.00) |
0.94 (1.00) |
11p loss | 198 (34%) | 381 |
0.237 (0.529) |
0.0117 (0.084) |
0.546 (0.811) |
0.311 (0.603) |
0.199 (0.493) |
0.036 (0.177) |
0.43 (0.726) |
0.884 (0.985) |
0.146 (0.409) |
0.0737 (0.285) |
0.475 (0.758) |
0.146 (0.409) |
0.323 (0.621) |
0.801 (0.945) |
16p loss | 334 (58%) | 245 |
0.379 (0.686) |
0.845 (0.964) |
0.0415 (0.195) |
0.347 (0.653) |
0.218 (0.519) |
0.113 (0.36) |
0.144 (0.408) |
0.947 (1.00) |
0.135 (0.394) |
0.847 (0.965) |
0.0481 (0.219) |
0.0698 (0.279) |
0.675 (0.873) |
0.367 (0.677) |
16q loss | 413 (71%) | 166 |
0.578 (0.829) |
0.871 (0.978) |
0.00283 (0.0309) |
0.0779 (0.294) |
0.0278 (0.15) |
0.064 (0.262) |
0.412 (0.71) |
0.433 (0.729) |
0.155 (0.422) |
0.785 (0.932) |
0.0541 (0.237) |
0.127 (0.379) |
0.624 (0.849) |
0.608 (0.842) |
18p loss | 235 (41%) | 344 |
0.408 (0.708) |
0.949 (1.00) |
0.472 (0.758) |
0.0204 (0.123) |
0.546 (0.811) |
0.00251 (0.029) |
0.295 (0.588) |
0.498 (0.769) |
0.576 (0.827) |
0.0535 (0.236) |
0.839 (0.961) |
0.54 (0.806) |
0.666 (0.867) |
0.582 (0.83) |
1p gain | 168 (29%) | 411 |
0.0792 (0.296) |
0.349 (0.654) |
0.121 (0.371) |
0.735 (0.9) |
0.00051 (0.0096) |
0.182 (0.468) |
0.241 (0.535) |
0.898 (0.991) |
0.412 (0.71) |
0.614 (0.845) |
0.254 (0.544) |
0.683 (0.877) |
0.231 (0.524) |
0.522 (0.789) |
3p gain | 160 (28%) | 419 |
0.438 (0.735) |
0.449 (0.745) |
0.0715 (0.281) |
0.527 (0.793) |
0.0121 (0.0849) |
0.783 (0.931) |
0.875 (0.981) |
0.709 (0.89) |
0.48 (0.758) |
0.901 (0.991) |
0.99 (1.00) |
0.82 (0.951) |
1 (1.00) |
0.812 (0.95) |
5p gain | 199 (34%) | 380 |
0.565 (0.823) |
0.711 (0.89) |
0.858 (0.972) |
0.759 (0.916) |
0.0004 (0.0082) |
0.193 (0.488) |
0.444 (0.742) |
0.231 (0.524) |
0.512 (0.781) |
0.27 (0.559) |
0.181 (0.468) |
0.573 (0.827) |
0.666 (0.867) |
0.215 (0.517) |
8p gain | 119 (21%) | 460 |
0.0704 (0.28) |
0.00373 (0.0386) |
0.399 (0.701) |
0.417 (0.715) |
0.694 (0.884) |
0.809 (0.949) |
0.142 (0.406) |
0.296 (0.588) |
0.145 (0.409) |
0.0565 (0.242) |
0.131 (0.387) |
0.495 (0.769) |
0.221 (0.519) |
0.101 (0.343) |
19q gain | 161 (28%) | 418 |
0.26 (0.549) |
0.755 (0.916) |
0.907 (0.991) |
0.17 (0.453) |
5e-05 (0.00159) |
0.132 (0.389) |
0.54 (0.806) |
0.304 (0.596) |
0.313 (0.606) |
0.236 (0.528) |
0.27 (0.559) |
0.676 (0.873) |
0.594 (0.833) |
0.724 (0.897) |
xq gain | 108 (19%) | 471 |
0.655 (0.861) |
0.911 (0.994) |
0.651 (0.861) |
0.216 (0.518) |
6e-05 (0.00186) |
0.866 (0.976) |
0.217 (0.519) |
0.0862 (0.309) |
0.982 (1.00) |
0.822 (0.951) |
0.492 (0.767) |
0.489 (0.766) |
0.594 (0.833) |
0.517 (0.786) |
1q loss | 43 (7%) | 536 |
0.117 (0.368) |
0.0141 (0.0942) |
0.0578 (0.246) |
0.599 (0.837) |
0.689 (0.881) |
0.382 (0.687) |
0.88 (0.984) |
0.984 (1.00) |
0.454 (0.748) |
0.361 (0.668) |
0.97 (1.00) |
0.933 (1.00) |
||
2p loss | 53 (9%) | 526 |
0.931 (1.00) |
0.0237 (0.134) |
0.619 (0.849) |
0.49 (0.767) |
0.579 (0.829) |
0.774 (0.926) |
0.898 (0.991) |
0.728 (0.897) |
0.47 (0.758) |
0.901 (0.991) |
0.721 (0.897) |
0.402 (0.703) |
0.481 (0.758) |
|
4q loss | 362 (63%) | 217 |
0.206 (0.504) |
0.0818 (0.302) |
0.501 (0.771) |
0.718 (0.893) |
0.00153 (0.0197) |
0.559 (0.82) |
0.213 (0.516) |
0.262 (0.551) |
0.689 (0.881) |
0.475 (0.758) |
0.215 (0.517) |
0.18 (0.467) |
1 (1.00) |
0.37 (0.678) |
6p loss | 165 (28%) | 414 |
0.97 (1.00) |
0.02 (0.121) |
0.449 (0.745) |
0.508 (0.777) |
0.149 (0.413) |
0.119 (0.37) |
0.552 (0.817) |
0.593 (0.833) |
0.501 (0.771) |
0.0678 (0.274) |
0.479 (0.758) |
0.103 (0.345) |
0.571 (0.827) |
0.573 (0.827) |
11q loss | 148 (26%) | 431 |
0.297 (0.588) |
0.903 (0.991) |
0.214 (0.517) |
0.565 (0.823) |
0.00955 (0.071) |
0.0687 (0.276) |
0.401 (0.703) |
0.41 (0.709) |
0.181 (0.468) |
0.419 (0.716) |
0.498 (0.769) |
0.177 (0.465) |
0.594 (0.833) |
0.385 (0.689) |
18q loss | 293 (51%) | 286 |
0.338 (0.641) |
0.973 (1.00) |
0.296 (0.588) |
0.958 (1.00) |
0.857 (0.972) |
0.105 (0.35) |
0.941 (1.00) |
0.3 (0.591) |
0.233 (0.525) |
0.0372 (0.178) |
0.978 (1.00) |
0.779 (0.928) |
0.67 (0.87) |
0.245 (0.539) |
20p loss | 50 (9%) | 529 |
0.352 (0.658) |
0.725 (0.897) |
0.221 (0.519) |
0.624 (0.849) |
0.111 (0.359) |
0.468 (0.758) |
0.12 (0.37) |
0.205 (0.502) |
0.281 (0.571) |
0.36 (0.668) |
0.00108 (0.0155) |
0.271 (0.559) |
0.481 (0.758) |
|
20q loss | 32 (6%) | 547 |
0.116 (0.366) |
0.5 (0.771) |
0.0369 (0.178) |
0.504 (0.773) |
0.441 (0.737) |
0.64 (0.859) |
0.0683 (0.275) |
0.271 (0.559) |
0.228 (0.523) |
0.419 (0.716) |
0.133 (0.392) |
0.379 (0.686) |
0.481 (0.758) |
|
xq loss | 280 (48%) | 299 |
0.196 (0.491) |
0.352 (0.658) |
0.405 (0.706) |
0.961 (1.00) |
0.00022 (0.00515) |
0.113 (0.36) |
0.398 (0.701) |
0.083 (0.302) |
0.654 (0.861) |
0.678 (0.874) |
0.646 (0.86) |
0.668 (0.869) |
1 (1.00) |
0.289 (0.583) |
5q gain | 60 (10%) | 519 |
0.0588 (0.249) |
0.197 (0.492) |
0.822 (0.951) |
0.894 (0.991) |
0.844 (0.964) |
0.495 (0.769) |
0.646 (0.86) |
0.75 (0.912) |
0.594 (0.833) |
0.241 (0.535) |
0.379 (0.686) |
0.792 (0.938) |
0.481 (0.758) |
|
9q gain | 45 (8%) | 534 |
0.251 (0.544) |
0.305 (0.597) |
0.0932 (0.324) |
0.533 (0.8) |
0.141 (0.406) |
0.221 (0.519) |
0.42 (0.716) |
0.329 (0.63) |
0.244 (0.539) |
0.308 (0.6) |
0.498 (0.769) |
0.756 (0.916) |
0.455 (0.748) |
|
14q gain | 59 (10%) | 520 |
0.14 (0.406) |
0.191 (0.483) |
0.405 (0.706) |
0.7 (0.886) |
0.411 (0.709) |
0.74 (0.904) |
0.628 (0.85) |
0.65 (0.861) |
0.818 (0.951) |
0.803 (0.945) |
0.655 (0.861) |
0.633 (0.853) |
1 (1.00) |
|
15q gain | 40 (7%) | 539 |
0.844 (0.964) |
0.486 (0.764) |
0.0873 (0.312) |
0.755 (0.916) |
0.0971 (0.336) |
0.605 (0.84) |
0.609 (0.842) |
0.061 (0.255) |
0.558 (0.82) |
0.467 (0.758) |
0.314 (0.606) |
0.201 (0.497) |
1 (1.00) |
|
17p gain | 22 (4%) | 557 |
0.429 (0.726) |
0.114 (0.363) |
0.0564 (0.242) |
0.0526 (0.235) |
0.151 (0.414) |
0.235 (0.528) |
0.502 (0.771) |
0.653 (0.861) |
0.511 (0.781) |
0.123 (0.373) |
0.175 (0.459) |
0.841 (0.963) |
||
22q gain | 24 (4%) | 555 |
0.366 (0.675) |
0.596 (0.835) |
0.931 (1.00) |
0.605 (0.84) |
0.37 (0.678) |
0.174 (0.458) |
0.592 (0.833) |
0.118 (0.369) |
0.0862 (0.309) |
0.278 (0.566) |
0.0991 (0.339) |
0.0829 (0.302) |
0.571 (0.827) |
0.385 (0.689) |
2q loss | 59 (10%) | 520 |
0.92 (1.00) |
0.272 (0.559) |
0.695 (0.884) |
0.15 (0.414) |
0.858 (0.972) |
0.682 (0.877) |
0.71 (0.89) |
0.144 (0.408) |
0.331 (0.632) |
0.735 (0.9) |
0.558 (0.82) |
0.227 (0.523) |
0.481 (0.758) |
|
7p loss | 121 (21%) | 458 |
0.99 (1.00) |
0.403 (0.704) |
0.477 (0.758) |
0.699 (0.886) |
0.111 (0.358) |
0.149 (0.413) |
0.517 (0.786) |
0.899 (0.991) |
0.11 (0.358) |
0.23 (0.523) |
0.54 (0.806) |
0.794 (0.939) |
0.594 (0.833) |
0.202 (0.498) |
7q loss | 81 (14%) | 498 |
0.334 (0.635) |
0.0888 (0.315) |
0.346 (0.651) |
0.303 (0.595) |
0.733 (0.9) |
0.109 (0.357) |
1 (1.00) |
0.426 (0.723) |
0.295 (0.588) |
0.0615 (0.256) |
0.121 (0.372) |
0.82 (0.951) |
1 (1.00) |
0.34 (0.642) |
10p loss | 97 (17%) | 482 |
0.221 (0.519) |
0.963 (1.00) |
0.219 (0.519) |
0.334 (0.635) |
0.646 (0.86) |
0.229 (0.523) |
0.896 (0.991) |
0.87 (0.978) |
0.811 (0.95) |
0.78 (0.928) |
0.362 (0.669) |
0.834 (0.959) |
1 (1.00) |
0.22 (0.519) |
17p loss | 478 (83%) | 101 |
0.339 (0.641) |
0.231 (0.524) |
0.136 (0.394) |
0.204 (0.502) |
0.587 (0.833) |
0.245 (0.539) |
0.55 (0.816) |
0.575 (0.827) |
0.157 (0.426) |
0.221 (0.519) |
0.474 (0.758) |
0.476 (0.758) |
1 (1.00) |
|
21q loss | 199 (34%) | 380 |
0.82 (0.951) |
0.053 (0.235) |
0.384 (0.689) |
0.181 (0.468) |
0.491 (0.767) |
0.141 (0.406) |
0.6 (0.837) |
0.808 (0.949) |
0.764 (0.919) |
0.487 (0.765) |
0.687 (0.881) |
0.73 (0.897) |
0.162 (0.436) |
0.582 (0.83) |
P value = 0.00051 (Fisher's exact test), Q value = 0.0096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
1P GAIN MUTATED | 37 | 52 | 79 |
1P GAIN WILD-TYPE | 134 | 154 | 123 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
1Q GAIN MUTATED | 56 | 55 | 110 |
1Q GAIN WILD-TYPE | 115 | 151 | 92 |
P value = 0.00842 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
1Q GAIN MUTATED | 82 | 57 | 78 |
1Q GAIN WILD-TYPE | 90 | 118 | 143 |
P value = 0.047 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 108 | 113 |
1Q GAIN MUTATED | 27 | 53 | 39 |
1Q GAIN WILD-TYPE | 52 | 55 | 74 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
2P GAIN MUTATED | 93 | 45 | 36 |
2P GAIN WILD-TYPE | 122 | 171 | 90 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
2P GAIN MUTATED | 77 | 48 | 49 |
2P GAIN WILD-TYPE | 233 | 110 | 40 |
P value = 0.00061 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
2P GAIN MUTATED | 21 | 16 | 22 | 21 | 10 | 20 | 17 | 9 | 30 | 8 |
2P GAIN WILD-TYPE | 64 | 41 | 36 | 61 | 24 | 55 | 17 | 27 | 22 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
2P GAIN MUTATED | 37 | 47 | 102 |
2P GAIN WILD-TYPE | 134 | 159 | 100 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
2P GAIN MUTATED | 83 | 44 | 52 |
2P GAIN WILD-TYPE | 89 | 131 | 169 |
P value = 0.00414 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 189 | 76 |
2P GAIN MUTATED | 46 | 74 | 14 |
2P GAIN WILD-TYPE | 100 | 115 | 62 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 108 | 113 |
2P GAIN MUTATED | 13 | 54 | 39 |
2P GAIN WILD-TYPE | 66 | 54 | 74 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 59 | 95 |
2P GAIN MUTATED | 33 | 37 | 36 |
2P GAIN WILD-TYPE | 113 | 22 | 59 |
P value = 0.0256 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
2P GAIN MUTATED | 23 | 27 | 63 | 32 |
2P GAIN WILD-TYPE | 82 | 44 | 102 | 74 |
P value = 0.00053 (Fisher's exact test), Q value = 0.0098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
2Q GAIN MUTATED | 76 | 42 | 29 |
2Q GAIN WILD-TYPE | 139 | 174 | 97 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
2Q GAIN MUTATED | 70 | 36 | 41 |
2Q GAIN WILD-TYPE | 240 | 122 | 48 |
P value = 0.00791 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
2Q GAIN MUTATED | 16 | 12 | 18 | 18 | 9 | 20 | 15 | 6 | 24 | 8 |
2Q GAIN WILD-TYPE | 69 | 45 | 40 | 64 | 25 | 55 | 19 | 30 | 28 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
2Q GAIN MUTATED | 31 | 40 | 84 |
2Q GAIN WILD-TYPE | 140 | 166 | 118 |
P value = 0.00022 (Fisher's exact test), Q value = 0.0052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
2Q GAIN MUTATED | 66 | 36 | 49 |
2Q GAIN WILD-TYPE | 106 | 139 | 172 |
P value = 0.046 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 189 | 76 |
2Q GAIN MUTATED | 35 | 59 | 13 |
2Q GAIN WILD-TYPE | 111 | 130 | 63 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 108 | 113 |
2Q GAIN MUTATED | 10 | 44 | 30 |
2Q GAIN WILD-TYPE | 69 | 64 | 83 |
P value = 0.00017 (Fisher's exact test), Q value = 0.0043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 59 | 95 |
2Q GAIN MUTATED | 29 | 29 | 26 |
2Q GAIN WILD-TYPE | 117 | 30 | 69 |
P value = 0.00601 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
2Q GAIN MUTATED | 16 | 23 | 55 | 28 |
2Q GAIN WILD-TYPE | 89 | 48 | 110 | 78 |
P value = 0.0121 (Fisher's exact test), Q value = 0.085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
3P GAIN MUTATED | 38 | 51 | 71 |
3P GAIN WILD-TYPE | 133 | 155 | 131 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
3Q GAIN MUTATED | 58 | 90 | 127 |
3Q GAIN WILD-TYPE | 113 | 116 | 75 |
P value = 0.0172 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
3Q GAIN MUTATED | 96 | 72 | 99 |
3Q GAIN WILD-TYPE | 76 | 103 | 122 |
P value = 0.0049 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 164 | 232 |
4P GAIN MUTATED | 7 | 16 | 33 |
4P GAIN WILD-TYPE | 152 | 148 | 199 |
P value = 0.016 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
4P GAIN MUTATED | 9 | 23 | 28 |
4P GAIN WILD-TYPE | 162 | 183 | 174 |
P value = 0.0179 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
4P GAIN MUTATED | 8 | 13 | 24 | 6 |
4P GAIN WILD-TYPE | 97 | 58 | 141 | 100 |
P value = 0.00436 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
4Q GAIN MUTATED | 2 | 15 | 15 |
4Q GAIN WILD-TYPE | 169 | 191 | 187 |
P value = 0.00818 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
4Q GAIN MUTATED | 17 | 8 | 6 |
4Q GAIN WILD-TYPE | 155 | 167 | 215 |
P value = 0.0252 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 54 | 60 | 154 |
4Q GAIN MUTATED | 9 | 4 | 8 | 4 |
4Q GAIN WILD-TYPE | 134 | 50 | 52 | 150 |
P value = 4e-04 (Fisher's exact test), Q value = 0.0082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
5P GAIN MUTATED | 39 | 77 | 83 |
5P GAIN WILD-TYPE | 132 | 129 | 119 |
P value = 0.00425 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
6P GAIN MUTATED | 79 | 44 | 39 |
6P GAIN WILD-TYPE | 231 | 114 | 50 |
P value = 0.0127 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
6P GAIN MUTATED | 20 | 13 | 14 | 20 | 11 | 28 | 11 | 13 | 25 | 6 |
6P GAIN WILD-TYPE | 65 | 44 | 44 | 62 | 23 | 47 | 23 | 23 | 27 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
6P GAIN MUTATED | 29 | 56 | 85 |
6P GAIN WILD-TYPE | 142 | 150 | 117 |
P value = 0.00011 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
6P GAIN MUTATED | 72 | 39 | 55 |
6P GAIN WILD-TYPE | 100 | 136 | 166 |
P value = 0.00079 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 59 | 95 |
6P GAIN MUTATED | 36 | 31 | 31 |
6P GAIN WILD-TYPE | 110 | 28 | 64 |
P value = 0.0211 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
6Q GAIN MUTATED | 11 | 5 | 9 | 14 | 7 | 9 | 10 | 8 | 16 | 3 |
6Q GAIN WILD-TYPE | 74 | 52 | 49 | 68 | 27 | 66 | 24 | 28 | 36 | 39 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
6Q GAIN MUTATED | 12 | 30 | 55 |
6Q GAIN WILD-TYPE | 159 | 176 | 147 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
6Q GAIN MUTATED | 48 | 16 | 32 |
6Q GAIN WILD-TYPE | 124 | 159 | 189 |
P value = 0.0342 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 59 | 95 |
6Q GAIN MUTATED | 23 | 18 | 14 |
6Q GAIN WILD-TYPE | 123 | 41 | 81 |
P value = 0.0297 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
6Q GAIN MUTATED | 15 | 19 | 35 | 12 |
6Q GAIN WILD-TYPE | 90 | 52 | 130 | 94 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
7P GAIN MUTATED | 43 | 44 | 94 |
7P GAIN WILD-TYPE | 128 | 162 | 108 |
P value = 2e-04 (Fisher's exact test), Q value = 0.0049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
7P GAIN MUTATED | 75 | 41 | 63 |
7P GAIN WILD-TYPE | 97 | 134 | 158 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
7Q GAIN MUTATED | 46 | 57 | 100 |
7Q GAIN WILD-TYPE | 125 | 149 | 102 |
P value = 0.00141 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
7Q GAIN MUTATED | 76 | 45 | 77 |
7Q GAIN WILD-TYPE | 96 | 130 | 144 |
P value = 0.00373 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
8P GAIN MUTATED | 49 | 45 | 22 |
8P GAIN WILD-TYPE | 261 | 113 | 67 |
P value = 0.0212 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
8Q GAIN MUTATED | 83 | 86 | 67 |
8Q GAIN WILD-TYPE | 132 | 130 | 59 |
P value = 0.00068 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
8Q GAIN MUTATED | 115 | 87 | 34 |
8Q GAIN WILD-TYPE | 195 | 71 | 55 |
P value = 0.00622 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 108 | 113 |
8Q GAIN MUTATED | 39 | 36 | 61 |
8Q GAIN WILD-TYPE | 40 | 72 | 52 |
P value = 0.0151 (Fisher's exact test), Q value = 0.099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 59 | 95 |
8Q GAIN MUTATED | 64 | 19 | 53 |
8Q GAIN WILD-TYPE | 82 | 40 | 42 |
P value = 0.031 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 12 | 10 |
8Q GAIN MUTATED | 7 | 1 |
8Q GAIN WILD-TYPE | 5 | 9 |
P value = 0.00273 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
9P GAIN MUTATED | 17 | 29 | 46 |
9P GAIN WILD-TYPE | 154 | 177 | 156 |
P value = 0.00829 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
9P GAIN MUTATED | 33 | 16 | 42 |
9P GAIN WILD-TYPE | 139 | 159 | 179 |
P value = 0.00435 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
10P GAIN MUTATED | 81 | 53 | 48 |
10P GAIN WILD-TYPE | 134 | 163 | 78 |
P value = 0.0206 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
10P GAIN MUTATED | 90 | 52 | 40 |
10P GAIN WILD-TYPE | 220 | 106 | 49 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
10P GAIN MUTATED | 41 | 45 | 102 |
10P GAIN WILD-TYPE | 130 | 161 | 100 |
P value = 0.00015 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
10P GAIN MUTATED | 77 | 44 | 63 |
10P GAIN WILD-TYPE | 95 | 131 | 158 |
P value = 0.0016 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 108 | 113 |
10P GAIN MUTATED | 14 | 45 | 40 |
10P GAIN WILD-TYPE | 65 | 63 | 73 |
P value = 0.00057 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
10P GAIN MUTATED | 22 | 27 | 70 | 27 |
10P GAIN WILD-TYPE | 83 | 44 | 95 | 79 |
P value = 0.00392 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
10Q GAIN MUTATED | 55 | 28 | 24 |
10Q GAIN WILD-TYPE | 160 | 188 | 102 |
P value = 0.00939 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
10Q GAIN MUTATED | 52 | 27 | 28 |
10Q GAIN WILD-TYPE | 258 | 131 | 61 |
P value = 0.00387 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
10Q GAIN MUTATED | 24 | 33 | 54 |
10Q GAIN WILD-TYPE | 147 | 173 | 148 |
P value = 0.016 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 108 | 113 |
10Q GAIN MUTATED | 7 | 27 | 20 |
10Q GAIN WILD-TYPE | 72 | 81 | 93 |
P value = 0.014 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
11P GAIN MUTATED | 26 | 13 | 37 |
11P GAIN WILD-TYPE | 146 | 162 | 184 |
P value = 0.00823 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 189 | 76 |
11P GAIN MUTATED | 9 | 32 | 11 |
11P GAIN WILD-TYPE | 137 | 157 | 65 |
P value = 0.00441 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
11Q GAIN MUTATED | 20 | 48 | 47 |
11Q GAIN WILD-TYPE | 151 | 158 | 155 |
P value = 0.00197 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
11Q GAIN MUTATED | 38 | 20 | 55 |
11Q GAIN WILD-TYPE | 134 | 155 | 166 |
P value = 3e-05 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
12P GAIN MUTATED | 118 | 75 | 49 |
12P GAIN WILD-TYPE | 97 | 141 | 77 |
P value = 0.00151 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
12P GAIN MUTATED | 132 | 57 | 53 |
12P GAIN WILD-TYPE | 178 | 101 | 36 |
P value = 0.00115 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
12P GAIN MUTATED | 33 | 20 | 28 | 36 | 15 | 30 | 19 | 11 | 37 | 12 |
12P GAIN WILD-TYPE | 52 | 37 | 30 | 46 | 19 | 45 | 15 | 25 | 15 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
12P GAIN MUTATED | 54 | 68 | 133 |
12P GAIN WILD-TYPE | 117 | 138 | 69 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
12P GAIN MUTATED | 104 | 71 | 74 |
12P GAIN WILD-TYPE | 68 | 104 | 147 |
P value = 0.00046 (Fisher's exact test), Q value = 0.0088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 108 | 113 |
12P GAIN MUTATED | 22 | 61 | 45 |
12P GAIN WILD-TYPE | 57 | 47 | 68 |
P value = 7e-04 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 59 | 95 |
12P GAIN MUTATED | 53 | 38 | 37 |
12P GAIN WILD-TYPE | 93 | 21 | 58 |
P value = 2e-04 (Fisher's exact test), Q value = 0.0049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
12P GAIN MUTATED | 27 | 38 | 81 | 46 |
12P GAIN WILD-TYPE | 78 | 33 | 84 | 60 |
P value = 0.00448 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
12Q GAIN MUTATED | 81 | 50 | 38 |
12Q GAIN WILD-TYPE | 134 | 166 | 88 |
P value = 0.034 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
12Q GAIN MUTATED | 27 | 16 | 21 | 21 | 11 | 20 | 15 | 9 | 23 | 5 |
12Q GAIN WILD-TYPE | 58 | 41 | 37 | 61 | 23 | 55 | 19 | 27 | 29 | 37 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
12Q GAIN MUTATED | 40 | 38 | 99 |
12Q GAIN WILD-TYPE | 131 | 168 | 103 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
12Q GAIN MUTATED | 78 | 43 | 54 |
12Q GAIN WILD-TYPE | 94 | 132 | 167 |
P value = 0.0221 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 108 | 113 |
12Q GAIN MUTATED | 21 | 45 | 29 |
12Q GAIN WILD-TYPE | 58 | 63 | 84 |
P value = 0.0219 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 59 | 95 |
12Q GAIN MUTATED | 45 | 27 | 23 |
12Q GAIN WILD-TYPE | 101 | 32 | 72 |
P value = 0.011 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
12Q GAIN MUTATED | 19 | 28 | 53 | 34 |
12Q GAIN WILD-TYPE | 86 | 43 | 112 | 72 |
P value = 0.00782 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
13Q GAIN MUTATED | 26 | 12 | 19 |
13Q GAIN WILD-TYPE | 189 | 204 | 107 |
P value = 0.00029 (Fisher's exact test), Q value = 0.0065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
13Q GAIN MUTATED | 19 | 20 | 18 |
13Q GAIN WILD-TYPE | 291 | 138 | 71 |
P value = 0.0246 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
13Q GAIN MUTATED | 6 | 8 | 5 | 6 | 2 | 10 | 9 | 1 | 8 | 1 |
13Q GAIN WILD-TYPE | 79 | 49 | 53 | 76 | 32 | 65 | 25 | 35 | 44 | 41 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
13Q GAIN MUTATED | 22 | 7 | 31 |
13Q GAIN WILD-TYPE | 149 | 199 | 171 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
13Q GAIN MUTATED | 31 | 20 | 8 |
13Q GAIN WILD-TYPE | 141 | 155 | 213 |
P value = 0.0338 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 108 | 113 |
13Q GAIN MUTATED | 3 | 15 | 16 |
13Q GAIN WILD-TYPE | 76 | 93 | 97 |
P value = 0.00253 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
16P GAIN MUTATED | 34 | 18 | 6 |
16P GAIN WILD-TYPE | 181 | 198 | 120 |
P value = 0.00433 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
16P GAIN MUTATED | 34 | 8 | 16 |
16P GAIN WILD-TYPE | 276 | 150 | 73 |
P value = 0.0299 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
16P GAIN MUTATED | 14 | 15 | 30 |
16P GAIN WILD-TYPE | 157 | 191 | 172 |
P value = 0.0174 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
16P GAIN MUTATED | 23 | 9 | 26 |
16P GAIN WILD-TYPE | 149 | 166 | 195 |
P value = 0.00066 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
16Q GAIN MUTATED | 18 | 12 | 0 |
16Q GAIN WILD-TYPE | 197 | 204 | 126 |
P value = 0.0444 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
16Q GAIN MUTATED | 20 | 3 | 7 |
16Q GAIN WILD-TYPE | 290 | 155 | 82 |
P value = 0.00346 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
16Q GAIN MUTATED | 10 | 2 | 18 |
16Q GAIN WILD-TYPE | 162 | 173 | 203 |
P value = 0.00084 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 182 | 144 |
16Q GAIN MUTATED | 0 | 9 | 13 |
16Q GAIN WILD-TYPE | 121 | 173 | 131 |
P value = 0.0369 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
17Q GAIN MUTATED | 18 | 16 | 12 |
17Q GAIN WILD-TYPE | 292 | 142 | 77 |
P value = 0.0371 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
17Q GAIN MUTATED | 8 | 5 | 5 | 4 | 1 | 3 | 0 | 4 | 10 | 6 |
17Q GAIN WILD-TYPE | 77 | 52 | 53 | 78 | 33 | 72 | 34 | 32 | 42 | 36 |
P value = 0.00127 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
18P GAIN MUTATED | 26 | 35 | 59 |
18P GAIN WILD-TYPE | 145 | 171 | 143 |
P value = 0.00029 (Fisher's exact test), Q value = 0.0065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
18P GAIN MUTATED | 54 | 26 | 38 |
18P GAIN WILD-TYPE | 118 | 149 | 183 |
P value = 0.0232 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
18Q GAIN MUTATED | 14 | 23 | 35 |
18Q GAIN WILD-TYPE | 157 | 183 | 167 |
P value = 0.0243 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
18Q GAIN MUTATED | 32 | 17 | 23 |
18Q GAIN WILD-TYPE | 140 | 158 | 198 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
19P GAIN MUTATED | 33 | 55 | 83 |
19P GAIN WILD-TYPE | 138 | 151 | 119 |
P value = 0.026 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
19P GAIN MUTATED | 60 | 39 | 69 |
19P GAIN WILD-TYPE | 112 | 136 | 152 |
P value = 5e-05 (Fisher's exact test), Q value = 0.0016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
19Q GAIN MUTATED | 33 | 49 | 79 |
19Q GAIN WILD-TYPE | 138 | 157 | 123 |
P value = 0.00129 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
20P GAIN MUTATED | 125 | 88 | 64 |
20P GAIN WILD-TYPE | 90 | 128 | 62 |
P value = 0.00111 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
20P GAIN MUTATED | 147 | 70 | 60 |
20P GAIN WILD-TYPE | 163 | 88 | 29 |
P value = 0.00042 (Fisher's exact test), Q value = 0.0085
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
20P GAIN MUTATED | 31 | 27 | 33 | 36 | 21 | 41 | 26 | 16 | 32 | 13 |
20P GAIN WILD-TYPE | 54 | 30 | 25 | 46 | 13 | 34 | 8 | 20 | 20 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
20P GAIN MUTATED | 66 | 79 | 144 |
20P GAIN WILD-TYPE | 105 | 127 | 58 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
20P GAIN MUTATED | 117 | 79 | 86 |
20P GAIN WILD-TYPE | 55 | 96 | 135 |
P value = 0.0131 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 108 | 113 |
20P GAIN MUTATED | 32 | 67 | 57 |
20P GAIN WILD-TYPE | 47 | 41 | 56 |
P value = 0.00366 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
20P GAIN MUTATED | 40 | 41 | 98 | 50 |
20P GAIN WILD-TYPE | 65 | 30 | 67 | 56 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
20Q GAIN MUTATED | 143 | 95 | 76 |
20Q GAIN WILD-TYPE | 72 | 121 | 50 |
P value = 0.00044 (Fisher's exact test), Q value = 0.0086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
20Q GAIN MUTATED | 164 | 83 | 67 |
20Q GAIN WILD-TYPE | 146 | 75 | 22 |
P value = 0.00013 (Fisher's exact test), Q value = 0.0035
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
20Q GAIN MUTATED | 35 | 30 | 35 | 40 | 24 | 41 | 26 | 21 | 42 | 19 |
20Q GAIN WILD-TYPE | 50 | 27 | 23 | 42 | 10 | 34 | 8 | 15 | 10 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
20Q GAIN MUTATED | 69 | 98 | 161 |
20Q GAIN WILD-TYPE | 102 | 108 | 41 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
20Q GAIN MUTATED | 132 | 87 | 101 |
20Q GAIN WILD-TYPE | 40 | 88 | 120 |
P value = 0.00638 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 59 | 95 |
20Q GAIN MUTATED | 74 | 44 | 57 |
20Q GAIN WILD-TYPE | 72 | 15 | 38 |
P value = 0.0048 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
20Q GAIN MUTATED | 48 | 47 | 108 | 57 |
20Q GAIN WILD-TYPE | 57 | 24 | 57 | 49 |
P value = 0.00139 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
21Q GAIN MUTATED | 22 | 33 | 54 |
21Q GAIN WILD-TYPE | 149 | 173 | 148 |
P value = 0.0163 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
21Q GAIN MUTATED | 45 | 25 | 39 |
21Q GAIN WILD-TYPE | 127 | 150 | 182 |
P value = 0.024 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 182 | 144 |
21Q GAIN MUTATED | 34 | 30 | 23 |
21Q GAIN WILD-TYPE | 87 | 152 | 121 |
P value = 0.0441 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
21Q GAIN MUTATED | 16 | 20 | 37 | 14 |
21Q GAIN WILD-TYPE | 89 | 51 | 128 | 92 |
P value = 0.0294 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
XP GAIN MUTATED | 14 | 29 | 35 |
XP GAIN WILD-TYPE | 157 | 177 | 167 |
P value = 0.0388 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 182 | 144 |
XP GAIN MUTATED | 17 | 31 | 11 |
XP GAIN WILD-TYPE | 104 | 151 | 133 |
P value = 6e-05 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
XQ GAIN MUTATED | 17 | 35 | 56 |
XQ GAIN WILD-TYPE | 154 | 171 | 146 |
P value = 0.0324 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
1P LOSS MUTATED | 33 | 16 | 13 |
1P LOSS WILD-TYPE | 182 | 200 | 113 |
P value = 0.00034 (Fisher's exact test), Q value = 0.0072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
1P LOSS MUTATED | 31 | 10 | 21 |
1P LOSS WILD-TYPE | 279 | 148 | 68 |
P value = 0.0141 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
1Q LOSS MUTATED | 20 | 7 | 13 |
1Q LOSS WILD-TYPE | 290 | 151 | 76 |
P value = 0.0237 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
2P LOSS MUTATED | 39 | 10 | 4 |
2P LOSS WILD-TYPE | 271 | 148 | 85 |
P value = 0.0226 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
3P LOSS MUTATED | 45 | 25 | 24 |
3P LOSS WILD-TYPE | 170 | 191 | 102 |
P value = 0.00088 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
3P LOSS MUTATED | 38 | 30 | 26 |
3P LOSS WILD-TYPE | 272 | 128 | 63 |
P value = 0.00538 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
3P LOSS MUTATED | 16 | 4 | 4 | 12 | 5 | 13 | 12 | 8 | 15 | 5 |
3P LOSS WILD-TYPE | 69 | 53 | 54 | 70 | 29 | 62 | 22 | 28 | 37 | 37 |
P value = 0.00038 (Fisher's exact test), Q value = 0.0079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
3P LOSS MUTATED | 23 | 22 | 50 |
3P LOSS WILD-TYPE | 148 | 184 | 152 |
P value = 0.00268 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
3P LOSS MUTATED | 42 | 27 | 25 |
3P LOSS WILD-TYPE | 130 | 148 | 196 |
P value = 0.0296 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 54 | 60 | 154 |
3P LOSS MUTATED | 19 | 8 | 17 | 18 |
3P LOSS WILD-TYPE | 124 | 46 | 43 | 136 |
P value = 0.00144 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 59 | 95 |
3P LOSS MUTATED | 15 | 18 | 21 |
3P LOSS WILD-TYPE | 131 | 41 | 74 |
P value = 0.013 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
3Q LOSS MUTATED | 22 | 8 | 13 |
3Q LOSS WILD-TYPE | 193 | 208 | 113 |
P value = 0.0389 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
3Q LOSS MUTATED | 17 | 14 | 12 |
3Q LOSS WILD-TYPE | 293 | 144 | 77 |
P value = 0.0304 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
3Q LOSS MUTATED | 14 | 8 | 21 |
3Q LOSS WILD-TYPE | 157 | 198 | 181 |
P value = 0.00325 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
3Q LOSS MUTATED | 22 | 13 | 8 |
3Q LOSS WILD-TYPE | 150 | 162 | 213 |
P value = 0.035 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 59 | 95 |
3Q LOSS MUTATED | 6 | 8 | 10 |
3Q LOSS WILD-TYPE | 140 | 51 | 85 |
P value = 0.00102 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
3Q LOSS MUTATED | 3 | 7 | 21 | 2 |
3Q LOSS WILD-TYPE | 102 | 64 | 144 | 104 |
P value = 0.033 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 2 | 2 | 6 | 4 | 2 |
3Q LOSS MUTATED | 1 | 1 | 0 | 0 | 0 | 2 |
3Q LOSS WILD-TYPE | 5 | 1 | 2 | 6 | 4 | 0 |
P value = 0.022 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
4P LOSS MUTATED | 176 | 72 | 55 |
4P LOSS WILD-TYPE | 134 | 86 | 34 |
P value = 0.00454 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
4P LOSS MUTATED | 93 | 96 | 127 |
4P LOSS WILD-TYPE | 78 | 110 | 75 |
P value = 0.00153 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
4Q LOSS MUTATED | 107 | 111 | 144 |
4Q LOSS WILD-TYPE | 64 | 95 | 58 |
P value = 0.0314 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
5P LOSS MUTATED | 69 | 30 | 30 |
5P LOSS WILD-TYPE | 241 | 128 | 59 |
P value = 0.0121 (Fisher's exact test), Q value = 0.085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
5P LOSS MUTATED | 33 | 39 | 61 |
5P LOSS WILD-TYPE | 138 | 167 | 141 |
P value = 0.00661 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
5P LOSS MUTATED | 52 | 28 | 50 |
5P LOSS WILD-TYPE | 120 | 147 | 171 |
P value = 0.00065 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 108 | 113 |
5P LOSS MUTATED | 13 | 42 | 23 |
5P LOSS WILD-TYPE | 66 | 66 | 90 |
P value = 0.00161 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 59 | 95 |
5P LOSS MUTATED | 35 | 26 | 17 |
5P LOSS WILD-TYPE | 111 | 33 | 78 |
P value = 0.00033 (Fisher's exact test), Q value = 0.0071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
5Q LOSS MUTATED | 105 | 68 | 41 |
5Q LOSS WILD-TYPE | 110 | 148 | 85 |
P value = 0.00172 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
5Q LOSS MUTATED | 113 | 52 | 49 |
5Q LOSS WILD-TYPE | 197 | 106 | 40 |
P value = 0.0131 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
5Q LOSS MUTATED | 27 | 20 | 23 | 28 | 14 | 24 | 22 | 14 | 29 | 13 |
5Q LOSS WILD-TYPE | 58 | 37 | 35 | 54 | 20 | 51 | 12 | 22 | 23 | 29 |
P value = 0.00044 (Fisher's exact test), Q value = 0.0086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
5Q LOSS MUTATED | 54 | 69 | 100 |
5Q LOSS WILD-TYPE | 117 | 137 | 102 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
5Q LOSS MUTATED | 96 | 51 | 72 |
5Q LOSS WILD-TYPE | 76 | 124 | 149 |
P value = 0.00102 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 108 | 113 |
5Q LOSS MUTATED | 24 | 58 | 37 |
5Q LOSS WILD-TYPE | 55 | 50 | 76 |
P value = 0.00165 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 59 | 95 |
5Q LOSS MUTATED | 55 | 35 | 29 |
5Q LOSS WILD-TYPE | 91 | 24 | 66 |
P value = 0.00742 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
5Q LOSS MUTATED | 37 | 36 | 76 | 31 |
5Q LOSS WILD-TYPE | 68 | 35 | 89 | 75 |
P value = 0.02 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
6P LOSS MUTATED | 98 | 46 | 15 |
6P LOSS WILD-TYPE | 212 | 112 | 74 |
P value = 0.0339 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
6Q LOSS MUTATED | 80 | 92 | 70 |
6Q LOSS WILD-TYPE | 91 | 114 | 132 |
P value = 0.0118 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 59 | 95 |
6Q LOSS MUTATED | 60 | 15 | 47 |
6Q LOSS WILD-TYPE | 86 | 44 | 48 |
P value = 0.00246 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
8P LOSS MUTATED | 66 | 97 | 114 |
8P LOSS WILD-TYPE | 105 | 109 | 88 |
P value = 0.0371 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
8P LOSS MUTATED | 37 | 39 | 83 | 51 |
8P LOSS WILD-TYPE | 68 | 32 | 82 | 55 |
P value = 0.00771 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
8Q LOSS MUTATED | 46 | 25 | 14 |
8Q LOSS WILD-TYPE | 169 | 191 | 112 |
P value = 0.00549 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
8Q LOSS MUTATED | 43 | 18 | 24 |
8Q LOSS WILD-TYPE | 267 | 140 | 65 |
P value = 0.00101 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
8Q LOSS MUTATED | 18 | 25 | 47 |
8Q LOSS WILD-TYPE | 153 | 181 | 155 |
P value = 0.0347 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
8Q LOSS MUTATED | 37 | 24 | 27 |
8Q LOSS WILD-TYPE | 135 | 151 | 194 |
P value = 0.00273 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 108 | 113 |
8Q LOSS MUTATED | 8 | 29 | 13 |
8Q LOSS WILD-TYPE | 71 | 79 | 100 |
P value = 0.00092 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 59 | 95 |
8Q LOSS MUTATED | 19 | 20 | 11 |
8Q LOSS WILD-TYPE | 127 | 39 | 84 |
P value = 0.00285 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
9P LOSS MUTATED | 106 | 77 | 65 |
9P LOSS WILD-TYPE | 109 | 139 | 61 |
P value = 0.00607 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
9P LOSS MUTATED | 125 | 70 | 53 |
9P LOSS WILD-TYPE | 185 | 88 | 36 |
P value = 0.016 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
9P LOSS MUTATED | 79 | 78 | 105 |
9P LOSS WILD-TYPE | 92 | 128 | 97 |
P value = 0.00689 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
9Q LOSS MUTATED | 120 | 88 | 63 |
9Q LOSS WILD-TYPE | 95 | 128 | 63 |
P value = 0.0138 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
9Q LOSS MUTATED | 143 | 72 | 56 |
9Q LOSS WILD-TYPE | 167 | 86 | 33 |
P value = 0.034 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
9Q LOSS MUTATED | 31 | 30 | 34 | 33 | 21 | 33 | 21 | 18 | 31 | 19 |
9Q LOSS WILD-TYPE | 54 | 27 | 24 | 49 | 13 | 42 | 13 | 18 | 21 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
9Q LOSS MUTATED | 81 | 68 | 137 |
9Q LOSS WILD-TYPE | 90 | 138 | 65 |
P value = 0.00612 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
9Q LOSS MUTATED | 102 | 80 | 97 |
9Q LOSS WILD-TYPE | 70 | 95 | 124 |
P value = 0.00723 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 108 | 113 |
9Q LOSS MUTATED | 27 | 62 | 52 |
9Q LOSS WILD-TYPE | 52 | 46 | 61 |
P value = 0.00087 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 59 | 95 |
9Q LOSS MUTATED | 57 | 40 | 44 |
9Q LOSS WILD-TYPE | 89 | 19 | 51 |
P value = 0.00462 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 164 | 232 |
10Q LOSS MUTATED | 32 | 23 | 64 |
10Q LOSS WILD-TYPE | 127 | 141 | 168 |
P value = 0.0232 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
10Q LOSS MUTATED | 33 | 35 | 56 |
10Q LOSS WILD-TYPE | 138 | 171 | 146 |
P value = 0.00197 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
10Q LOSS MUTATED | 53 | 27 | 43 |
10Q LOSS WILD-TYPE | 119 | 148 | 178 |
P value = 0.0117 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
11P LOSS MUTATED | 91 | 57 | 41 |
11P LOSS WILD-TYPE | 219 | 101 | 48 |
P value = 0.036 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
11P LOSS MUTATED | 72 | 54 | 67 |
11P LOSS WILD-TYPE | 100 | 121 | 154 |
P value = 0.00955 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
11Q LOSS MUTATED | 38 | 43 | 67 |
11Q LOSS WILD-TYPE | 133 | 163 | 135 |
P value = 0.0028 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
12P LOSS MUTATED | 18 | 32 | 27 |
12P LOSS WILD-TYPE | 197 | 184 | 99 |
P value = 0.0107 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
12P LOSS MUTATED | 42 | 30 | 5 |
12P LOSS WILD-TYPE | 268 | 128 | 84 |
P value = 0.00691 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
12P LOSS MUTATED | 12 | 12 | 6 | 11 | 4 | 12 | 1 | 11 | 1 | 7 |
12P LOSS WILD-TYPE | 73 | 45 | 52 | 71 | 30 | 63 | 33 | 25 | 51 | 35 |
P value = 0.00101 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
12P LOSS MUTATED | 26 | 39 | 14 |
12P LOSS WILD-TYPE | 145 | 167 | 188 |
P value = 0.00958 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 182 | 144 |
12P LOSS MUTATED | 18 | 35 | 11 |
12P LOSS WILD-TYPE | 103 | 147 | 133 |
P value = 0.00637 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
12P LOSS MUTATED | 24 | 5 | 26 | 9 |
12P LOSS WILD-TYPE | 81 | 66 | 139 | 97 |
P value = 0.023 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
12Q LOSS MUTATED | 29 | 49 | 27 |
12Q LOSS WILD-TYPE | 142 | 157 | 175 |
P value = 0.0266 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 59 | 95 |
12Q LOSS MUTATED | 21 | 5 | 23 |
12Q LOSS WILD-TYPE | 125 | 54 | 72 |
P value = 0.0265 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 182 | 144 |
12Q LOSS MUTATED | 24 | 40 | 16 |
12Q LOSS WILD-TYPE | 97 | 142 | 128 |
P value = 0.0305 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
12Q LOSS MUTATED | 27 | 9 | 32 | 12 |
12Q LOSS WILD-TYPE | 78 | 62 | 133 | 94 |
P value = 0.0398 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 2 | 2 | 6 | 4 | 2 |
12Q LOSS MUTATED | 0 | 0 | 1 | 4 | 0 | 0 |
12Q LOSS WILD-TYPE | 6 | 2 | 1 | 2 | 4 | 2 |
P value = 0.029 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
13Q LOSS MUTATED | 111 | 129 | 57 |
13Q LOSS WILD-TYPE | 104 | 87 | 69 |
P value = 0.00842 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
13Q LOSS MUTATED | 182 | 78 | 37 |
13Q LOSS WILD-TYPE | 128 | 80 | 52 |
P value = 0.0166 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
13Q LOSS MUTATED | 46 | 29 | 38 | 50 | 17 | 30 | 13 | 26 | 25 | 24 |
13Q LOSS WILD-TYPE | 39 | 28 | 20 | 32 | 17 | 45 | 21 | 10 | 27 | 18 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
13Q LOSS MUTATED | 89 | 72 | 144 |
13Q LOSS WILD-TYPE | 83 | 103 | 77 |
P value = 0.0111 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 189 | 76 |
13Q LOSS MUTATED | 64 | 114 | 40 |
13Q LOSS WILD-TYPE | 82 | 75 | 36 |
P value = 0.0139 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 54 | 60 | 154 |
13Q LOSS MUTATED | 63 | 30 | 41 | 84 |
13Q LOSS WILD-TYPE | 80 | 24 | 19 | 70 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
14Q LOSS MUTATED | 52 | 58 | 105 |
14Q LOSS WILD-TYPE | 119 | 148 | 97 |
P value = 0.0036 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
14Q LOSS MUTATED | 81 | 58 | 70 |
14Q LOSS WILD-TYPE | 91 | 117 | 151 |
P value = 0.00775 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 108 | 113 |
14Q LOSS MUTATED | 19 | 49 | 36 |
14Q LOSS WILD-TYPE | 60 | 59 | 77 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 59 | 95 |
14Q LOSS MUTATED | 36 | 34 | 34 |
14Q LOSS WILD-TYPE | 110 | 25 | 61 |
P value = 0.00056 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
15Q LOSS MUTATED | 126 | 87 | 57 |
15Q LOSS WILD-TYPE | 89 | 129 | 69 |
P value = 0.017 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
15Q LOSS MUTATED | 150 | 66 | 54 |
15Q LOSS WILD-TYPE | 160 | 92 | 35 |
P value = 0.00011 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 164 | 232 |
15Q LOSS MUTATED | 62 | 70 | 138 |
15Q LOSS WILD-TYPE | 97 | 94 | 94 |
P value = 0.00031 (Fisher's exact test), Q value = 0.0068
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
15Q LOSS MUTATED | 26 | 27 | 34 | 41 | 18 | 42 | 23 | 18 | 30 | 11 |
15Q LOSS WILD-TYPE | 59 | 30 | 24 | 41 | 16 | 33 | 11 | 18 | 22 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
15Q LOSS MUTATED | 65 | 74 | 141 |
15Q LOSS WILD-TYPE | 106 | 132 | 61 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
15Q LOSS MUTATED | 114 | 69 | 94 |
15Q LOSS WILD-TYPE | 58 | 106 | 127 |
P value = 0.00601 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 108 | 113 |
15Q LOSS MUTATED | 27 | 62 | 51 |
15Q LOSS WILD-TYPE | 52 | 46 | 62 |
P value = 0.00832 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 182 | 144 |
15Q LOSS MUTATED | 55 | 108 | 63 |
15Q LOSS WILD-TYPE | 66 | 74 | 81 |
P value = 0.00062 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
15Q LOSS MUTATED | 43 | 37 | 103 | 43 |
15Q LOSS WILD-TYPE | 62 | 34 | 62 | 63 |
P value = 0.0427 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 12 | 10 |
15Q LOSS MUTATED | 4 | 8 |
15Q LOSS WILD-TYPE | 8 | 2 |
P value = 0.0415 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 164 | 232 |
16P LOSS MUTATED | 97 | 81 | 142 |
16P LOSS WILD-TYPE | 62 | 83 | 90 |
P value = 0.0481 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 182 | 144 |
16P LOSS MUTATED | 67 | 120 | 77 |
16P LOSS WILD-TYPE | 54 | 62 | 67 |
P value = 0.00283 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 164 | 232 |
16Q LOSS MUTATED | 117 | 100 | 178 |
16Q LOSS WILD-TYPE | 42 | 64 | 54 |
P value = 0.0278 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
16Q LOSS MUTATED | 112 | 144 | 157 |
16Q LOSS WILD-TYPE | 59 | 62 | 45 |
P value = 0.0282 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
17Q LOSS MUTATED | 220 | 94 | 55 |
17Q LOSS WILD-TYPE | 90 | 64 | 34 |
P value = 0.0153 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 164 | 232 |
17Q LOSS MUTATED | 104 | 96 | 168 |
17Q LOSS WILD-TYPE | 55 | 68 | 64 |
P value = 0.0118 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
17Q LOSS MUTATED | 50 | 37 | 43 | 59 | 19 | 50 | 30 | 26 | 26 | 28 |
17Q LOSS WILD-TYPE | 35 | 20 | 15 | 23 | 15 | 25 | 4 | 10 | 26 | 14 |
P value = 0.031 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 108 | 113 |
17Q LOSS MUTATED | 61 | 70 | 67 |
17Q LOSS WILD-TYPE | 18 | 38 | 46 |
P value = 0.0204 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
18P LOSS MUTATED | 37 | 16 | 20 | 27 | 21 | 40 | 12 | 17 | 20 | 19 |
18P LOSS WILD-TYPE | 48 | 41 | 38 | 55 | 13 | 35 | 22 | 19 | 32 | 23 |
P value = 0.00251 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
18P LOSS MUTATED | 59 | 90 | 83 |
18P LOSS WILD-TYPE | 113 | 85 | 138 |
P value = 0.0372 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 59 | 95 |
18Q LOSS MUTATED | 64 | 37 | 52 |
18Q LOSS WILD-TYPE | 82 | 22 | 43 |
P value = 0.0437 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
19P LOSS MUTATED | 26 | 16 | 20 | 31 | 8 | 20 | 18 | 9 | 11 | 19 |
19P LOSS WILD-TYPE | 59 | 41 | 38 | 51 | 26 | 55 | 16 | 27 | 41 | 23 |
P value = 0.00525 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
19P LOSS MUTATED | 56 | 50 | 79 |
19P LOSS WILD-TYPE | 115 | 156 | 123 |
P value = 0.019 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
19P LOSS MUTATED | 69 | 49 | 62 |
19P LOSS WILD-TYPE | 103 | 126 | 159 |
P value = 0.0149 (Fisher's exact test), Q value = 0.098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 189 | 76 |
19P LOSS MUTATED | 36 | 54 | 33 |
19P LOSS WILD-TYPE | 110 | 135 | 43 |
P value = 0.0115 (Fisher's exact test), Q value = 0.083
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 12 | 10 |
19P LOSS MUTATED | 8 | 1 |
19P LOSS WILD-TYPE | 4 | 9 |
P value = 0.0164 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
19Q LOSS MUTATED | 29 | 16 | 16 | 31 | 7 | 18 | 18 | 9 | 9 | 17 |
19Q LOSS WILD-TYPE | 56 | 41 | 42 | 51 | 27 | 57 | 16 | 27 | 43 | 25 |
P value = 0.00461 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
19Q LOSS MUTATED | 61 | 46 | 71 |
19Q LOSS WILD-TYPE | 110 | 160 | 131 |
P value = 0.0192 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 189 | 76 |
19Q LOSS MUTATED | 34 | 49 | 31 |
19Q LOSS WILD-TYPE | 112 | 140 | 45 |
P value = 0.00535 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 12 | 10 |
19Q LOSS MUTATED | 7 | 0 |
19Q LOSS WILD-TYPE | 5 | 10 |
P value = 0.00108 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 182 | 144 |
20P LOSS MUTATED | 2 | 23 | 15 |
20P LOSS WILD-TYPE | 119 | 159 | 129 |
P value = 0.0369 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 164 | 232 |
20Q LOSS MUTATED | 11 | 3 | 16 |
20Q LOSS WILD-TYPE | 148 | 161 | 216 |
P value = 0.00227 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
22Q LOSS MUTATED | 175 | 144 | 93 |
22Q LOSS WILD-TYPE | 40 | 72 | 33 |
P value = 0.036 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 164 | 232 |
22Q LOSS MUTATED | 110 | 117 | 185 |
22Q LOSS WILD-TYPE | 49 | 47 | 47 |
P value = 5e-05 (Fisher's exact test), Q value = 0.0016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
22Q LOSS MUTATED | 120 | 139 | 171 |
22Q LOSS WILD-TYPE | 51 | 67 | 31 |
P value = 0.00183 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
22Q LOSS MUTATED | 140 | 134 | 146 |
22Q LOSS WILD-TYPE | 32 | 41 | 75 |
P value = 0.0154 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 189 | 76 |
22Q LOSS MUTATED | 105 | 151 | 48 |
22Q LOSS WILD-TYPE | 41 | 38 | 28 |
P value = 0.0144 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 146 | 59 | 95 |
22Q LOSS MUTATED | 101 | 52 | 70 |
22Q LOSS WILD-TYPE | 45 | 7 | 25 |
P value = 0.041 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 182 | 144 |
22Q LOSS MUTATED | 83 | 148 | 110 |
22Q LOSS WILD-TYPE | 38 | 34 | 34 |
P value = 0.00626 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
XP LOSS MUTATED | 97 | 131 | 97 |
XP LOSS WILD-TYPE | 74 | 75 | 105 |
P value = 0.0424 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
XP LOSS MUTATED | 84 | 101 | 136 |
XP LOSS WILD-TYPE | 88 | 74 | 85 |
P value = 0.021 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 54 | 60 | 154 |
XP LOSS MUTATED | 65 | 33 | 39 | 92 |
XP LOSS WILD-TYPE | 78 | 21 | 21 | 62 |
P value = 0.00022 (Fisher's exact test), Q value = 0.0052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
XQ LOSS MUTATED | 92 | 114 | 74 |
XQ LOSS WILD-TYPE | 79 | 92 | 128 |
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Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
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Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/OV-TP/19783384/transformed.cor.cli.txt
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Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/OV-TP/20141012/OV-TP.transferedmergedcluster.txt
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Number of patients = 579
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Number of significantly arm-level cnvs = 82
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Number of molecular subtypes = 14
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Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.