This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 69 arm-level events and 10 molecular subtypes across 162 patients, 137 significant findings detected with P value < 0.05 and Q value < 0.25.
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1q gain cnv correlated to 'CN_CNMF'.
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2p gain cnv correlated to 'METHLYATION_CNMF'.
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5q gain cnv correlated to 'METHLYATION_CNMF'.
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6q gain cnv correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.
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7p gain cnv correlated to 'CN_CNMF'.
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7q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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8p gain cnv correlated to 'CN_CNMF'.
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12p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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13q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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15q gain cnv correlated to 'METHLYATION_CNMF'.
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16q gain cnv correlated to 'CN_CNMF'.
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18q gain cnv correlated to 'RPPA_CHIERARCHICAL'.
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19p gain cnv correlated to 'CN_CNMF'.
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19q gain cnv correlated to 'METHLYATION_CNMF'.
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20q gain cnv correlated to 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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xp gain cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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xq gain cnv correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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1p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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1q loss cnv correlated to 'MIRSEQ_MATURE_CNMF'.
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2p loss cnv correlated to 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3q loss cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4p loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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4q loss cnv correlated to 'MRNASEQ_CNMF'.
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5p loss cnv correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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6q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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8p loss cnv correlated to 'CN_CNMF'.
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8q loss cnv correlated to 'CN_CNMF'.
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9p loss cnv correlated to 'CN_CNMF', 'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.
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9q loss cnv correlated to 'CN_CNMF'.
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11p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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13q loss cnv correlated to 'CN_CNMF'.
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14q loss cnv correlated to 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16p loss cnv correlated to 'METHLYATION_CNMF'.
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16q loss cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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17p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17q loss cnv correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.
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21q loss cnv correlated to 'MRNASEQ_CNMF'.
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22q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xp loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xq loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
6q loss | 19 (12%) | 143 |
0.00097 (0.0172) |
0.00034 (0.00894) |
0.0157 (0.131) |
0.119 (0.407) |
0.00052 (0.0116) |
6e-05 (0.00296) |
0.00022 (0.0069) |
2e-05 (0.00125) |
0.0119 (0.111) |
0.00244 (0.033) |
1p loss | 98 (60%) | 64 |
1e-05 (0.000986) |
0.0155 (0.131) |
0.202 (0.532) |
0.00011 (0.00422) |
0.00249 (0.033) |
0.00173 (0.0265) |
6e-05 (0.00296) |
0.0136 (0.12) |
0.0005 (0.0115) |
0.136 (0.439) |
3q loss | 88 (54%) | 74 |
8e-05 (0.00325) |
0.522 (0.783) |
0.0674 (0.298) |
0.0267 (0.172) |
0.043 (0.223) |
1e-05 (0.000986) |
0.00328 (0.0419) |
0.0319 (0.19) |
0.0118 (0.111) |
0.0165 (0.133) |
11p loss | 54 (33%) | 108 |
1e-05 (0.000986) |
0.0004 (0.00986) |
0.0549 (0.261) |
0.14 (0.446) |
0.00029 (0.008) |
1e-05 (0.000986) |
6e-05 (0.00296) |
1e-05 (0.000986) |
8e-05 (0.00325) |
0.00261 (0.034) |
xp loss | 48 (30%) | 114 |
8e-05 (0.00325) |
0.00201 (0.0295) |
0.0353 (0.198) |
0.44 (0.741) |
0.0129 (0.119) |
0.00123 (0.0207) |
0.00247 (0.033) |
0.0181 (0.136) |
0.237 (0.566) |
0.0184 (0.136) |
xq loss | 49 (30%) | 113 |
2e-05 (0.00125) |
0.0013 (0.0214) |
0.0244 (0.162) |
0.611 (0.836) |
0.00749 (0.0795) |
0.00076 (0.0142) |
0.00377 (0.0465) |
0.0108 (0.103) |
0.213 (0.546) |
0.0131 (0.119) |
3p loss | 62 (38%) | 100 |
0.00072 (0.0142) |
0.0943 (0.35) |
0.114 (0.401) |
0.26 (0.586) |
0.00054 (0.0116) |
1e-05 (0.000986) |
0.00075 (0.0142) |
0.00123 (0.0207) |
0.00013 (0.00472) |
0.00022 (0.0069) |
11q loss | 40 (25%) | 122 |
2e-05 (0.00125) |
0.0669 (0.298) |
0.154 (0.455) |
0.114 (0.401) |
0.00026 (0.00747) |
0.00057 (0.0119) |
0.0002 (0.0069) |
0.00035 (0.00894) |
0.00023 (0.0069) |
0.0275 (0.175) |
22q loss | 58 (36%) | 104 |
1e-05 (0.000986) |
0.0138 (0.12) |
0.557 (0.793) |
0.0839 (0.329) |
0.032 (0.19) |
0.00222 (0.0319) |
0.0492 (0.248) |
0.0524 (0.257) |
0.0276 (0.175) |
0.0244 (0.162) |
13q gain | 9 (6%) | 153 |
0.0188 (0.138) |
0.0206 (0.147) |
0.304 (0.633) |
0.624 (0.843) |
0.00986 (0.0972) |
0.00903 (0.0903) |
0.024 (0.162) |
0.0521 (0.257) |
0.00899 (0.0903) |
0.362 (0.675) |
17p loss | 61 (38%) | 101 |
0.00045 (0.0107) |
0.00248 (0.033) |
0.299 (0.632) |
0.159 (0.459) |
0.0701 (0.298) |
0.0338 (0.194) |
0.024 (0.162) |
0.0225 (0.156) |
0.214 (0.546) |
0.0136 (0.12) |
xp gain | 6 (4%) | 156 |
0.155 (0.455) |
0.018 (0.136) |
0.0349 (0.198) |
0.0165 (0.133) |
0.157 (0.456) |
0.0693 (0.298) |
0.0205 (0.147) |
0.294 (0.63) |
||
7q loss | 6 (4%) | 156 |
0.0316 (0.19) |
0.483 (0.765) |
0.0404 (0.215) |
0.174 (0.489) |
0.0299 (0.184) |
0.0246 (0.162) |
0.247 (0.572) |
0.13 (0.426) |
||
7q gain | 22 (14%) | 140 |
0.00737 (0.0795) |
0.00587 (0.0686) |
0.846 (0.981) |
0.0183 (0.136) |
0.172 (0.488) |
0.287 (0.628) |
0.142 (0.446) |
0.114 (0.401) |
0.52 (0.783) |
0.456 (0.745) |
12p gain | 11 (7%) | 151 |
0.0105 (0.102) |
0.00778 (0.0813) |
0.478 (0.765) |
0.12 (0.408) |
0.338 (0.657) |
0.322 (0.647) |
0.0179 (0.136) |
0.215 (0.549) |
0.129 (0.425) |
0.433 (0.738) |
20q gain | 10 (6%) | 152 |
0.543 (0.793) |
0.164 (0.472) |
0.155 (0.455) |
1 (1.00) |
0.0306 (0.187) |
0.063 (0.286) |
0.0387 (0.21) |
0.077 (0.311) |
0.0408 (0.215) |
0.51 (0.78) |
2p loss | 10 (6%) | 152 |
0.381 (0.686) |
0.0748 (0.305) |
0.756 (0.94) |
0.426 (0.737) |
0.00529 (0.064) |
0.18 (0.496) |
0.199 (0.528) |
0.00072 (0.0142) |
0.146 (0.451) |
0.00743 (0.0795) |
9p loss | 11 (7%) | 151 |
0.0491 (0.248) |
0.718 (0.917) |
0.0139 (0.12) |
0.0173 (0.136) |
0.181 (0.496) |
0.179 (0.496) |
0.673 (0.879) |
0.068 (0.298) |
0.55 (0.793) |
0.313 (0.635) |
14q loss | 20 (12%) | 142 |
0.236 (0.566) |
0.0525 (0.257) |
0.243 (0.567) |
0.203 (0.533) |
0.308 (0.633) |
0.795 (0.957) |
0.156 (0.455) |
0.00194 (0.0291) |
0.0295 (0.184) |
0.00147 (0.0236) |
6q gain | 8 (5%) | 154 |
0.147 (0.451) |
0.00162 (0.0254) |
0.0364 (0.201) |
0.11 (0.394) |
0.129 (0.425) |
0.186 (0.501) |
0.0787 (0.314) |
0.266 (0.594) |
||
xq gain | 5 (3%) | 157 |
0.176 (0.49) |
0.0435 (0.223) |
0.0541 (0.261) |
0.0548 (0.261) |
0.142 (0.446) |
0.0677 (0.298) |
0.0299 (0.184) |
0.0997 (0.364) |
||
4p loss | 11 (7%) | 151 |
0.0034 (0.0427) |
0.143 (0.446) |
0.615 (0.837) |
0.351 (0.663) |
0.00662 (0.0749) |
0.184 (0.499) |
0.295 (0.63) |
0.392 (0.696) |
0.0588 (0.274) |
0.146 (0.451) |
5p loss | 5 (3%) | 157 |
0.0654 (0.295) |
0.377 (0.686) |
0.0369 (0.202) |
0.036 (0.2) |
0.14 (0.446) |
0.165 (0.472) |
0.17 (0.481) |
0.0533 (0.259) |
||
17q loss | 19 (12%) | 143 |
2e-05 (0.00125) |
0.902 (1.00) |
0.174 (0.489) |
0.0323 (0.19) |
0.297 (0.632) |
0.23 (0.566) |
0.368 (0.678) |
0.089 (0.337) |
0.879 (0.999) |
0.263 (0.592) |
1q gain | 19 (12%) | 143 |
0.00083 (0.0151) |
0.353 (0.663) |
0.763 (0.947) |
1 (1.00) |
0.492 (0.769) |
0.592 (0.823) |
0.907 (1.00) |
0.665 (0.872) |
0.49 (0.769) |
0.849 (0.982) |
2p gain | 6 (4%) | 156 |
0.505 (0.779) |
0.00635 (0.073) |
0.0882 (0.336) |
1 (1.00) |
0.237 (0.566) |
0.344 (0.662) |
0.134 (0.437) |
0.337 (0.657) |
0.191 (0.512) |
0.458 (0.745) |
5q gain | 7 (4%) | 155 |
0.896 (1.00) |
0.00539 (0.0641) |
0.0744 (0.305) |
0.298 (0.632) |
0.482 (0.765) |
0.381 (0.686) |
0.942 (1.00) |
0.286 (0.628) |
||
7p gain | 27 (17%) | 135 |
0.0212 (0.149) |
0.073 (0.303) |
0.852 (0.984) |
0.148 (0.451) |
0.137 (0.44) |
0.378 (0.686) |
0.241 (0.566) |
0.0705 (0.298) |
0.314 (0.635) |
0.0867 (0.334) |
8p gain | 10 (6%) | 152 |
0.0191 (0.139) |
0.368 (0.678) |
0.861 (0.989) |
1 (1.00) |
0.0851 (0.331) |
0.0925 (0.345) |
0.0731 (0.303) |
0.155 (0.455) |
0.449 (0.744) |
0.0994 (0.364) |
15q gain | 14 (9%) | 148 |
0.251 (0.573) |
0.0326 (0.19) |
0.66 (0.871) |
0.35 (0.663) |
0.314 (0.635) |
0.769 (0.949) |
0.429 (0.737) |
0.794 (0.957) |
0.557 (0.793) |
0.925 (1.00) |
16q gain | 6 (4%) | 156 |
0.0146 (0.125) |
1 (1.00) |
0.272 (0.605) |
0.699 (0.9) |
1 (1.00) |
0.767 (0.949) |
0.398 (0.705) |
0.429 (0.737) |
||
18q gain | 10 (6%) | 152 |
0.351 (0.663) |
0.581 (0.818) |
0.474 (0.761) |
0.0398 (0.214) |
0.365 (0.678) |
0.538 (0.793) |
0.845 (0.981) |
0.438 (0.739) |
0.196 (0.525) |
0.533 (0.79) |
19p gain | 20 (12%) | 142 |
0.0163 (0.133) |
0.0788 (0.314) |
0.869 (0.992) |
0.78 (0.954) |
0.751 (0.939) |
0.643 (0.861) |
0.275 (0.609) |
0.925 (1.00) |
0.205 (0.535) |
0.729 (0.925) |
19q gain | 14 (9%) | 148 |
0.152 (0.455) |
0.0089 (0.0903) |
0.0876 (0.336) |
0.541 (0.793) |
0.375 (0.684) |
0.225 (0.561) |
0.459 (0.745) |
0.664 (0.872) |
0.524 (0.783) |
0.493 (0.769) |
1q loss | 27 (17%) | 135 |
0.895 (1.00) |
0.308 (0.633) |
0.895 (1.00) |
0.147 (0.451) |
0.125 (0.421) |
0.52 (0.783) |
0.663 (0.872) |
0.26 (0.586) |
0.0327 (0.19) |
0.239 (0.566) |
4q loss | 10 (6%) | 152 |
0.0734 (0.303) |
0.24 (0.566) |
0.611 (0.836) |
0.35 (0.663) |
0.0181 (0.136) |
0.338 (0.657) |
0.418 (0.73) |
0.526 (0.783) |
0.327 (0.649) |
0.323 (0.647) |
8p loss | 20 (12%) | 142 |
0.0221 (0.154) |
0.39 (0.696) |
0.844 (0.981) |
0.816 (0.971) |
0.126 (0.421) |
0.108 (0.39) |
0.717 (0.917) |
0.953 (1.00) |
0.282 (0.624) |
0.491 (0.769) |
8q loss | 12 (7%) | 150 |
0.0437 (0.223) |
0.743 (0.931) |
0.482 (0.765) |
1 (1.00) |
0.327 (0.649) |
0.621 (0.841) |
0.114 (0.401) |
0.438 (0.739) |
0.927 (1.00) |
0.426 (0.737) |
9q loss | 11 (7%) | 151 |
0.00749 (0.0795) |
0.612 (0.836) |
0.241 (0.566) |
0.35 (0.663) |
0.51 (0.78) |
0.632 (0.85) |
0.725 (0.924) |
0.402 (0.711) |
0.829 (0.974) |
0.443 (0.742) |
13q loss | 8 (5%) | 154 |
0.0351 (0.198) |
0.449 (0.744) |
0.776 (0.951) |
0.67 (0.877) |
0.315 (0.635) |
0.115 (0.402) |
0.527 (0.783) |
0.222 (0.559) |
0.547 (0.793) |
0.46 (0.745) |
16p loss | 9 (6%) | 153 |
0.336 (0.657) |
0.0431 (0.223) |
0.481 (0.765) |
0.444 (0.742) |
0.554 (0.793) |
0.361 (0.675) |
0.249 (0.573) |
0.406 (0.716) |
0.679 (0.882) |
0.774 (0.95) |
16q loss | 5 (3%) | 157 |
0.74 (0.931) |
0.444 (0.742) |
0.695 (0.897) |
0.786 (0.955) |
0.447 (0.744) |
0.0267 (0.172) |
0.208 (0.539) |
0.591 (0.823) |
0.0911 (0.342) |
0.829 (0.974) |
21q loss | 36 (22%) | 126 |
0.205 (0.535) |
0.0507 (0.254) |
0.944 (1.00) |
0.457 (0.745) |
0.0408 (0.215) |
0.939 (1.00) |
0.567 (0.801) |
0.603 (0.834) |
0.91 (1.00) |
0.716 (0.917) |
1p gain | 7 (4%) | 155 |
0.122 (0.412) |
0.784 (0.955) |
0.675 (0.88) |
0.821 (0.972) |
0.894 (1.00) |
0.526 (0.783) |
0.834 (0.975) |
0.654 (0.869) |
||
4p gain | 4 (2%) | 158 |
0.679 (0.882) |
0.368 (0.678) |
0.823 (0.972) |
0.556 (0.793) |
0.45 (0.744) |
0.788 (0.955) |
0.77 (0.949) |
1 (1.00) |
||
4q gain | 3 (2%) | 159 |
0.0613 (0.281) |
0.803 (0.963) |
0.469 (0.754) |
0.742 (0.931) |
0.614 (0.837) |
0.833 (0.975) |
0.815 (0.971) |
0.462 (0.747) |
||
5p gain | 11 (7%) | 151 |
0.624 (0.843) |
0.432 (0.738) |
0.483 (0.765) |
1 (1.00) |
0.914 (1.00) |
0.659 (0.871) |
0.856 (0.985) |
0.609 (0.836) |
0.829 (0.974) |
0.218 (0.552) |
6p gain | 15 (9%) | 147 |
0.888 (1.00) |
0.253 (0.577) |
0.156 (0.455) |
0.197 (0.525) |
0.305 (0.633) |
0.373 (0.683) |
0.24 (0.566) |
0.306 (0.633) |
0.56 (0.795) |
0.509 (0.78) |
8q gain | 13 (8%) | 149 |
0.241 (0.566) |
0.756 (0.94) |
0.59 (0.823) |
1 (1.00) |
0.0831 (0.328) |
0.0766 (0.311) |
0.114 (0.401) |
0.202 (0.532) |
0.806 (0.963) |
0.0904 (0.341) |
9p gain | 4 (2%) | 158 |
0.231 (0.566) |
0.0691 (0.298) |
0.154 (0.455) |
0.226 (0.562) |
0.289 (0.628) |
0.257 (0.583) |
0.299 (0.632) |
0.512 (0.78) |
||
9q gain | 3 (2%) | 159 |
0.459 (0.745) |
0.134 (0.437) |
0.238 (0.566) |
0.239 (0.566) |
0.46 (0.745) |
0.342 (0.662) |
0.293 (0.63) |
0.557 (0.793) |
||
10p gain | 12 (7%) | 150 |
0.511 (0.78) |
0.0732 (0.303) |
1 (1.00) |
0.119 (0.407) |
0.516 (0.781) |
0.516 (0.781) |
1 (1.00) |
0.84 (0.98) |
0.487 (0.769) |
0.18 (0.496) |
10q gain | 10 (6%) | 152 |
0.104 (0.377) |
0.695 (0.897) |
1 (1.00) |
0.118 (0.407) |
0.495 (0.769) |
0.594 (0.823) |
0.707 (0.909) |
0.508 (0.78) |
0.427 (0.737) |
0.156 (0.455) |
11p gain | 5 (3%) | 157 |
0.0854 (0.331) |
0.514 (0.781) |
0.548 (0.793) |
1 (1.00) |
0.415 (0.727) |
0.304 (0.633) |
0.54 (0.793) |
0.494 (0.769) |
0.344 (0.662) |
0.69 (0.893) |
12q gain | 14 (9%) | 148 |
0.0686 (0.298) |
0.224 (0.561) |
0.841 (0.98) |
0.494 (0.769) |
0.605 (0.835) |
0.655 (0.869) |
0.0614 (0.281) |
0.294 (0.63) |
0.221 (0.559) |
0.434 (0.738) |
14q gain | 4 (2%) | 158 |
0.0603 (0.279) |
0.371 (0.68) |
0.549 (0.793) |
0.554 (0.793) |
0.289 (0.628) |
0.789 (0.955) |
0.77 (0.949) |
0.872 (0.994) |
||
16p gain | 6 (4%) | 156 |
0.244 (0.567) |
0.553 (0.793) |
0.742 (0.931) |
0.742 (0.931) |
0.381 (0.686) |
0.818 (0.971) |
0.289 (0.628) |
0.502 (0.777) |
||
17q gain | 5 (3%) | 157 |
0.544 (0.793) |
0.31 (0.634) |
0.785 (0.955) |
0.333 (0.656) |
0.303 (0.633) |
0.304 (0.633) |
0.54 (0.793) |
0.773 (0.95) |
0.541 (0.793) |
0.21 (0.542) |
18p gain | 8 (5%) | 154 |
0.148 (0.451) |
0.23 (0.566) |
0.436 (0.739) |
0.117 (0.405) |
0.383 (0.686) |
0.654 (0.869) |
0.466 (0.752) |
0.562 (0.797) |
0.128 (0.425) |
0.854 (0.985) |
20p gain | 12 (7%) | 150 |
0.645 (0.861) |
0.366 (0.678) |
0.265 (0.594) |
0.726 (0.924) |
0.181 (0.496) |
0.343 (0.662) |
0.17 (0.481) |
0.382 (0.686) |
0.594 (0.823) |
0.589 (0.823) |
21q gain | 3 (2%) | 159 |
0.251 (0.573) |
0.136 (0.439) |
0.239 (0.566) |
0.0694 (0.298) |
0.183 (0.496) |
0.411 (0.721) |
0.291 (0.63) |
0.806 (0.963) |
||
22q gain | 3 (2%) | 159 |
0.249 (0.573) |
0.0816 (0.323) |
0.237 (0.566) |
0.149 (0.452) |
0.183 (0.496) |
0.408 (0.718) |
0.056 (0.263) |
0.805 (0.963) |
||
2q loss | 13 (8%) | 149 |
0.82 (0.972) |
0.451 (0.744) |
0.68 (0.882) |
0.428 (0.737) |
0.419 (0.73) |
0.141 (0.446) |
0.53 (0.787) |
0.0961 (0.355) |
0.327 (0.649) |
0.346 (0.663) |
5q loss | 7 (4%) | 155 |
0.385 (0.688) |
0.784 (0.955) |
0.326 (0.649) |
1 (1.00) |
0.645 (0.861) |
0.523 (0.783) |
0.896 (1.00) |
0.359 (0.674) |
0.226 (0.562) |
0.307 (0.633) |
15q loss | 3 (2%) | 159 |
0.351 (0.663) |
0.334 (0.656) |
1 (1.00) |
0.865 (0.991) |
0.617 (0.838) |
0.833 (0.975) |
0.898 (1.00) |
1 (1.00) |
||
18p loss | 16 (10%) | 146 |
0.499 (0.774) |
0.744 (0.931) |
0.727 (0.924) |
0.208 (0.539) |
0.857 (0.985) |
0.756 (0.94) |
0.893 (1.00) |
0.314 (0.635) |
0.609 (0.836) |
0.458 (0.745) |
18q loss | 6 (4%) | 156 |
0.287 (0.628) |
0.874 (0.996) |
0.547 (0.793) |
0.0554 (0.262) |
0.586 (0.821) |
0.659 (0.871) |
0.572 (0.807) |
0.584 (0.821) |
0.433 (0.738) |
0.868 (0.992) |
19q loss | 6 (4%) | 156 |
0.243 (0.567) |
1 (1.00) |
0.942 (1.00) |
0.945 (1.00) |
0.334 (0.656) |
0.627 (0.845) |
0.926 (1.00) |
0.931 (1.00) |
||
20q loss | 3 (2%) | 159 |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.643 (0.861) |
0.79 (0.955) |
1 (1.00) |
0.731 (0.926) |
0.806 (0.963) |
P value = 0.00083 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
1Q GAIN MUTATED | 6 | 2 | 11 |
1Q GAIN WILD-TYPE | 54 | 61 | 28 |
P value = 0.00635 (Fisher's exact test), Q value = 0.073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 78 | 44 |
2P GAIN MUTATED | 5 | 1 | 0 |
2P GAIN WILD-TYPE | 35 | 77 | 44 |
P value = 0.00539 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 78 | 44 |
5Q GAIN MUTATED | 2 | 0 | 5 |
5Q GAIN WILD-TYPE | 38 | 78 | 39 |
P value = 0.00162 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 78 | 44 |
6Q GAIN MUTATED | 2 | 0 | 6 |
6Q GAIN WILD-TYPE | 38 | 78 | 38 |
P value = 0.0364 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 64 | 44 | 21 |
6Q GAIN MUTATED | 1 | 1 | 6 | 0 |
6Q GAIN WILD-TYPE | 32 | 63 | 38 | 21 |
P value = 0.0212 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
7P GAIN MUTATED | 4 | 15 | 8 |
7P GAIN WILD-TYPE | 56 | 48 | 31 |
P value = 0.00737 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
7Q GAIN MUTATED | 2 | 13 | 7 |
7Q GAIN WILD-TYPE | 58 | 50 | 32 |
P value = 0.00587 (Fisher's exact test), Q value = 0.069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 78 | 44 |
7Q GAIN MUTATED | 8 | 4 | 10 |
7Q GAIN WILD-TYPE | 32 | 74 | 34 |
P value = 0.0183 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 18 | 28 |
7Q GAIN MUTATED | 1 | 2 | 8 |
7Q GAIN WILD-TYPE | 30 | 16 | 20 |
P value = 0.0191 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
8P GAIN MUTATED | 0 | 6 | 4 |
8P GAIN WILD-TYPE | 60 | 57 | 35 |
P value = 0.0105 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
12P GAIN MUTATED | 1 | 3 | 7 |
12P GAIN WILD-TYPE | 59 | 60 | 32 |
P value = 0.00778 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 78 | 44 |
12P GAIN MUTATED | 4 | 1 | 6 |
12P GAIN WILD-TYPE | 36 | 77 | 38 |
P value = 0.0179 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 58 | 39 |
12P GAIN MUTATED | 9 | 1 | 1 |
12P GAIN WILD-TYPE | 56 | 57 | 38 |
P value = 0.0188 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
13Q GAIN MUTATED | 0 | 7 | 2 |
13Q GAIN WILD-TYPE | 60 | 56 | 37 |
P value = 0.0206 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 78 | 44 |
13Q GAIN MUTATED | 5 | 1 | 3 |
13Q GAIN WILD-TYPE | 35 | 77 | 41 |
P value = 0.00986 (Fisher's exact test), Q value = 0.097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 64 | 44 | 21 |
13Q GAIN MUTATED | 2 | 0 | 6 | 1 |
13Q GAIN WILD-TYPE | 31 | 64 | 38 | 20 |
P value = 0.00903 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
13Q GAIN MUTATED | 2 | 0 | 6 | 1 |
13Q GAIN WILD-TYPE | 32 | 64 | 37 | 20 |
P value = 0.024 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 58 | 39 |
13Q GAIN MUTATED | 7 | 0 | 2 |
13Q GAIN WILD-TYPE | 58 | 58 | 37 |
P value = 0.00899 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 58 | 11 | 35 | 23 |
13Q GAIN MUTATED | 2 | 0 | 0 | 6 | 1 |
13Q GAIN WILD-TYPE | 32 | 58 | 11 | 29 | 22 |
P value = 0.0326 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 78 | 44 |
15Q GAIN MUTATED | 3 | 3 | 8 |
15Q GAIN WILD-TYPE | 37 | 75 | 36 |
P value = 0.0146 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
16Q GAIN MUTATED | 2 | 0 | 4 |
16Q GAIN WILD-TYPE | 58 | 63 | 35 |
P value = 0.0398 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 18 | 28 |
18Q GAIN MUTATED | 0 | 3 | 2 |
18Q GAIN WILD-TYPE | 31 | 15 | 26 |
P value = 0.0163 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
19P GAIN MUTATED | 2 | 10 | 8 |
19P GAIN WILD-TYPE | 58 | 53 | 31 |
P value = 0.0089 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 78 | 44 |
19Q GAIN MUTATED | 4 | 2 | 8 |
19Q GAIN WILD-TYPE | 36 | 76 | 36 |
P value = 0.0306 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 64 | 44 | 21 |
20Q GAIN MUTATED | 3 | 1 | 6 | 0 |
20Q GAIN WILD-TYPE | 30 | 63 | 38 | 21 |
P value = 0.0387 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 58 | 39 |
20Q GAIN MUTATED | 8 | 1 | 1 |
20Q GAIN WILD-TYPE | 57 | 57 | 38 |
P value = 0.0408 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 58 | 11 | 35 | 23 |
20Q GAIN MUTATED | 5 | 1 | 0 | 4 | 0 |
20Q GAIN WILD-TYPE | 29 | 57 | 11 | 31 | 23 |
P value = 0.018 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 78 | 44 |
XP GAIN MUTATED | 2 | 0 | 4 |
XP GAIN WILD-TYPE | 38 | 78 | 40 |
P value = 0.0349 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 64 | 44 | 21 |
XP GAIN MUTATED | 3 | 0 | 3 | 0 |
XP GAIN WILD-TYPE | 30 | 64 | 41 | 21 |
P value = 0.0165 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
XP GAIN MUTATED | 4 | 0 | 1 | 1 |
XP GAIN WILD-TYPE | 30 | 64 | 42 | 20 |
P value = 0.0205 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 58 | 11 | 35 | 23 |
XP GAIN MUTATED | 4 | 0 | 1 | 1 | 0 |
XP GAIN WILD-TYPE | 30 | 58 | 10 | 34 | 23 |
P value = 0.0435 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 78 | 44 |
XQ GAIN MUTATED | 2 | 0 | 3 |
XQ GAIN WILD-TYPE | 38 | 78 | 41 |
P value = 0.0299 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 58 | 11 | 35 | 23 |
XQ GAIN MUTATED | 4 | 0 | 0 | 1 | 0 |
XQ GAIN WILD-TYPE | 30 | 58 | 11 | 34 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
1P LOSS MUTATED | 51 | 24 | 23 |
1P LOSS WILD-TYPE | 9 | 39 | 16 |
P value = 0.0155 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 78 | 44 |
1P LOSS MUTATED | 19 | 56 | 23 |
1P LOSS WILD-TYPE | 21 | 22 | 21 |
P value = 0.00011 (Fisher's exact test), Q value = 0.0042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 18 | 28 |
1P LOSS MUTATED | 11 | 17 | 16 |
1P LOSS WILD-TYPE | 20 | 1 | 12 |
P value = 0.00249 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 64 | 44 | 21 |
1P LOSS MUTATED | 20 | 49 | 19 | 10 |
1P LOSS WILD-TYPE | 13 | 15 | 25 | 11 |
P value = 0.00173 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
1P LOSS MUTATED | 15 | 50 | 23 | 10 |
1P LOSS WILD-TYPE | 19 | 14 | 20 | 11 |
P value = 6e-05 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 58 | 39 |
1P LOSS MUTATED | 29 | 47 | 22 |
1P LOSS WILD-TYPE | 36 | 11 | 17 |
P value = 0.0136 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
1P LOSS MUTATED | 31 | 41 | 11 | 15 |
1P LOSS WILD-TYPE | 35 | 13 | 7 | 9 |
P value = 5e-04 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 58 | 11 | 35 | 23 |
1P LOSS MUTATED | 16 | 48 | 6 | 17 | 11 |
1P LOSS WILD-TYPE | 18 | 10 | 5 | 18 | 12 |
P value = 0.0327 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 58 | 11 | 35 | 23 |
1Q LOSS MUTATED | 3 | 9 | 0 | 12 | 3 |
1Q LOSS WILD-TYPE | 31 | 49 | 11 | 23 | 20 |
P value = 0.00529 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 64 | 44 | 21 |
2P LOSS MUTATED | 0 | 1 | 7 | 2 |
2P LOSS WILD-TYPE | 33 | 63 | 37 | 19 |
P value = 0.00072 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
2P LOSS MUTATED | 3 | 0 | 5 | 2 |
2P LOSS WILD-TYPE | 63 | 54 | 13 | 22 |
P value = 0.00743 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 71 | 53 | 18 | 19 |
2P LOSS MUTATED | 3 | 2 | 5 | 0 |
2P LOSS WILD-TYPE | 68 | 51 | 13 | 19 |
P value = 0.00072 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
3P LOSS MUTATED | 17 | 20 | 25 |
3P LOSS WILD-TYPE | 43 | 43 | 14 |
P value = 0.00054 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 64 | 44 | 21 |
3P LOSS MUTATED | 16 | 19 | 25 | 2 |
3P LOSS WILD-TYPE | 17 | 45 | 19 | 19 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
3P LOSS MUTATED | 9 | 21 | 30 | 2 |
3P LOSS WILD-TYPE | 25 | 43 | 13 | 19 |
P value = 0.00075 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 58 | 39 |
3P LOSS MUTATED | 35 | 20 | 7 |
3P LOSS WILD-TYPE | 30 | 38 | 32 |
P value = 0.00123 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
3P LOSS MUTATED | 36 | 17 | 6 | 3 |
3P LOSS WILD-TYPE | 30 | 37 | 12 | 21 |
P value = 0.00013 (Fisher's exact test), Q value = 0.0047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 58 | 11 | 35 | 23 |
3P LOSS MUTATED | 13 | 16 | 2 | 25 | 6 |
3P LOSS WILD-TYPE | 21 | 42 | 9 | 10 | 17 |
P value = 0.00022 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 71 | 53 | 18 | 19 |
3P LOSS MUTATED | 20 | 33 | 6 | 3 |
3P LOSS WILD-TYPE | 51 | 20 | 12 | 16 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
3Q LOSS MUTATED | 36 | 22 | 30 |
3Q LOSS WILD-TYPE | 24 | 41 | 9 |
P value = 0.0267 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 18 | 28 |
3Q LOSS MUTATED | 11 | 13 | 17 |
3Q LOSS WILD-TYPE | 20 | 5 | 11 |
P value = 0.043 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 64 | 44 | 21 |
3Q LOSS MUTATED | 20 | 40 | 22 | 6 |
3Q LOSS WILD-TYPE | 13 | 24 | 22 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
3Q LOSS MUTATED | 6 | 42 | 33 | 7 |
3Q LOSS WILD-TYPE | 28 | 22 | 10 | 14 |
P value = 0.00328 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 58 | 39 |
3Q LOSS MUTATED | 39 | 37 | 12 |
3Q LOSS WILD-TYPE | 26 | 21 | 27 |
P value = 0.0319 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
3Q LOSS MUTATED | 39 | 34 | 5 | 10 |
3Q LOSS WILD-TYPE | 27 | 20 | 13 | 14 |
P value = 0.0118 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 58 | 11 | 35 | 23 |
3Q LOSS MUTATED | 11 | 38 | 4 | 23 | 12 |
3Q LOSS WILD-TYPE | 23 | 20 | 7 | 12 | 11 |
P value = 0.0165 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 71 | 53 | 18 | 19 |
3Q LOSS MUTATED | 39 | 36 | 5 | 8 |
3Q LOSS WILD-TYPE | 32 | 17 | 13 | 11 |
P value = 0.0034 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
4P LOSS MUTATED | 0 | 5 | 6 |
4P LOSS WILD-TYPE | 60 | 58 | 33 |
P value = 0.00662 (Fisher's exact test), Q value = 0.075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 64 | 44 | 21 |
4P LOSS MUTATED | 0 | 3 | 8 | 0 |
4P LOSS WILD-TYPE | 33 | 61 | 36 | 21 |
P value = 0.0181 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 64 | 44 | 21 |
4Q LOSS MUTATED | 0 | 3 | 7 | 0 |
4Q LOSS WILD-TYPE | 33 | 61 | 37 | 21 |
P value = 0.0369 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 64 | 44 | 21 |
5P LOSS MUTATED | 1 | 0 | 4 | 0 |
5P LOSS WILD-TYPE | 32 | 64 | 40 | 21 |
P value = 0.036 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
5P LOSS MUTATED | 1 | 0 | 4 | 0 |
5P LOSS WILD-TYPE | 33 | 64 | 39 | 21 |
P value = 0.00097 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
6Q LOSS MUTATED | 13 | 1 | 5 |
6Q LOSS WILD-TYPE | 47 | 62 | 34 |
P value = 0.00034 (Fisher's exact test), Q value = 0.0089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 78 | 44 |
6Q LOSS MUTATED | 1 | 17 | 1 |
6Q LOSS WILD-TYPE | 39 | 61 | 43 |
P value = 0.0157 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 20 | 23 | 18 |
6Q LOSS MUTATED | 2 | 2 | 8 | 0 |
6Q LOSS WILD-TYPE | 14 | 18 | 15 | 18 |
P value = 0.00052 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 64 | 44 | 21 |
6Q LOSS MUTATED | 1 | 16 | 1 | 1 |
6Q LOSS WILD-TYPE | 32 | 48 | 43 | 20 |
P value = 6e-05 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
6Q LOSS MUTATED | 0 | 17 | 1 | 1 |
6Q LOSS WILD-TYPE | 34 | 47 | 42 | 20 |
P value = 0.00022 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 58 | 39 |
6Q LOSS MUTATED | 1 | 14 | 4 |
6Q LOSS WILD-TYPE | 64 | 44 | 35 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
6Q LOSS MUTATED | 1 | 16 | 1 | 1 |
6Q LOSS WILD-TYPE | 65 | 38 | 17 | 23 |
P value = 0.0119 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 58 | 11 | 35 | 23 |
6Q LOSS MUTATED | 2 | 14 | 1 | 1 | 1 |
6Q LOSS WILD-TYPE | 32 | 44 | 10 | 34 | 22 |
P value = 0.00244 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 71 | 53 | 18 | 19 |
6Q LOSS MUTATED | 16 | 1 | 1 | 1 |
6Q LOSS WILD-TYPE | 55 | 52 | 17 | 18 |
P value = 0.0316 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
7Q LOSS MUTATED | 5 | 0 | 1 |
7Q LOSS WILD-TYPE | 55 | 63 | 38 |
P value = 0.0404 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 64 | 44 | 21 |
7Q LOSS MUTATED | 0 | 6 | 0 | 0 |
7Q LOSS WILD-TYPE | 33 | 58 | 44 | 21 |
P value = 0.0299 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 58 | 39 |
7Q LOSS MUTATED | 0 | 5 | 1 |
7Q LOSS WILD-TYPE | 65 | 53 | 38 |
P value = 0.0246 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
7Q LOSS MUTATED | 0 | 5 | 1 | 0 |
7Q LOSS WILD-TYPE | 66 | 49 | 17 | 24 |
P value = 0.0221 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
8P LOSS MUTATED | 8 | 3 | 9 |
8P LOSS WILD-TYPE | 52 | 60 | 30 |
P value = 0.0437 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
8Q LOSS MUTATED | 6 | 1 | 5 |
8Q LOSS WILD-TYPE | 54 | 62 | 34 |
P value = 0.0491 (Fisher's exact test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
9P LOSS MUTATED | 5 | 1 | 5 |
9P LOSS WILD-TYPE | 55 | 62 | 34 |
P value = 0.0139 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 20 | 23 | 18 |
9P LOSS MUTATED | 0 | 0 | 4 | 0 |
9P LOSS WILD-TYPE | 16 | 20 | 19 | 18 |
P value = 0.0173 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 18 | 28 |
9P LOSS MUTATED | 0 | 0 | 4 |
9P LOSS WILD-TYPE | 31 | 18 | 24 |
P value = 0.00749 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
9Q LOSS MUTATED | 3 | 1 | 7 |
9Q LOSS WILD-TYPE | 57 | 62 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
11P LOSS MUTATED | 1 | 36 | 17 |
11P LOSS WILD-TYPE | 59 | 27 | 22 |
P value = 4e-04 (Fisher's exact test), Q value = 0.0099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 78 | 44 |
11P LOSS MUTATED | 21 | 15 | 18 |
11P LOSS WILD-TYPE | 19 | 63 | 26 |
P value = 0.00029 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 64 | 44 | 21 |
11P LOSS MUTATED | 12 | 11 | 25 | 6 |
11P LOSS WILD-TYPE | 21 | 53 | 19 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
11P LOSS MUTATED | 11 | 9 | 28 | 6 |
11P LOSS WILD-TYPE | 23 | 55 | 15 | 15 |
P value = 6e-05 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 58 | 39 |
11P LOSS MUTATED | 34 | 9 | 11 |
11P LOSS WILD-TYPE | 31 | 49 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
11P LOSS MUTATED | 37 | 6 | 5 | 6 |
11P LOSS WILD-TYPE | 29 | 48 | 13 | 18 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 58 | 11 | 35 | 23 |
11P LOSS MUTATED | 12 | 7 | 3 | 20 | 11 |
11P LOSS WILD-TYPE | 22 | 51 | 8 | 15 | 12 |
P value = 0.00261 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 71 | 53 | 18 | 19 |
11P LOSS MUTATED | 15 | 28 | 5 | 5 |
11P LOSS WILD-TYPE | 56 | 25 | 13 | 14 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
11Q LOSS MUTATED | 3 | 24 | 13 |
11Q LOSS WILD-TYPE | 57 | 39 | 26 |
P value = 0.00026 (Fisher's exact test), Q value = 0.0075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 64 | 44 | 21 |
11Q LOSS MUTATED | 8 | 7 | 21 | 4 |
11Q LOSS WILD-TYPE | 25 | 57 | 23 | 17 |
P value = 0.00057 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
11Q LOSS MUTATED | 9 | 8 | 20 | 3 |
11Q LOSS WILD-TYPE | 25 | 56 | 23 | 18 |
P value = 2e-04 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 58 | 39 |
11Q LOSS MUTATED | 26 | 5 | 9 |
11Q LOSS WILD-TYPE | 39 | 53 | 30 |
P value = 0.00035 (Fisher's exact test), Q value = 0.0089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
11Q LOSS MUTATED | 27 | 5 | 2 | 6 |
11Q LOSS WILD-TYPE | 39 | 49 | 16 | 18 |
P value = 0.00023 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 58 | 11 | 35 | 23 |
11Q LOSS MUTATED | 9 | 5 | 2 | 18 | 6 |
11Q LOSS WILD-TYPE | 25 | 53 | 9 | 17 | 17 |
P value = 0.0275 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 71 | 53 | 18 | 19 |
11Q LOSS MUTATED | 13 | 21 | 2 | 4 |
11Q LOSS WILD-TYPE | 58 | 32 | 16 | 15 |
P value = 0.0351 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
13Q LOSS MUTATED | 5 | 0 | 3 |
13Q LOSS WILD-TYPE | 55 | 63 | 36 |
P value = 0.00194 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
14Q LOSS MUTATED | 5 | 5 | 8 | 2 |
14Q LOSS WILD-TYPE | 61 | 49 | 10 | 22 |
P value = 0.0295 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 58 | 11 | 35 | 23 |
14Q LOSS MUTATED | 10 | 4 | 0 | 4 | 2 |
14Q LOSS WILD-TYPE | 24 | 54 | 11 | 31 | 21 |
P value = 0.00147 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 71 | 53 | 18 | 19 |
14Q LOSS MUTATED | 5 | 5 | 8 | 2 |
14Q LOSS WILD-TYPE | 66 | 48 | 10 | 17 |
P value = 0.0431 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 78 | 44 |
16P LOSS MUTATED | 5 | 4 | 0 |
16P LOSS WILD-TYPE | 35 | 74 | 44 |
P value = 0.0267 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
16Q LOSS MUTATED | 4 | 1 | 0 | 0 |
16Q LOSS WILD-TYPE | 30 | 63 | 43 | 21 |
P value = 0.00045 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
17P LOSS MUTATED | 20 | 16 | 25 |
17P LOSS WILD-TYPE | 40 | 47 | 14 |
P value = 0.00248 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 78 | 44 |
17P LOSS MUTATED | 9 | 40 | 12 |
17P LOSS WILD-TYPE | 31 | 38 | 32 |
P value = 0.0338 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
17P LOSS MUTATED | 10 | 33 | 13 | 5 |
17P LOSS WILD-TYPE | 24 | 31 | 30 | 16 |
P value = 0.024 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 58 | 39 |
17P LOSS MUTATED | 20 | 30 | 11 |
17P LOSS WILD-TYPE | 45 | 28 | 28 |
P value = 0.0225 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
17P LOSS MUTATED | 18 | 29 | 7 | 7 |
17P LOSS WILD-TYPE | 48 | 25 | 11 | 17 |
P value = 0.0136 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 71 | 53 | 18 | 19 |
17P LOSS MUTATED | 36 | 12 | 7 | 6 |
17P LOSS WILD-TYPE | 35 | 41 | 11 | 13 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
17Q LOSS MUTATED | 4 | 2 | 13 |
17Q LOSS WILD-TYPE | 56 | 61 | 26 |
P value = 0.0323 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 18 | 28 |
17Q LOSS MUTATED | 1 | 1 | 7 |
17Q LOSS WILD-TYPE | 30 | 17 | 21 |
P value = 0.0408 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 64 | 44 | 21 |
21Q LOSS MUTATED | 2 | 15 | 14 | 5 |
21Q LOSS WILD-TYPE | 31 | 49 | 30 | 16 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
22Q LOSS MUTATED | 35 | 8 | 15 |
22Q LOSS WILD-TYPE | 25 | 55 | 24 |
P value = 0.0138 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 78 | 44 |
22Q LOSS MUTATED | 10 | 37 | 11 |
22Q LOSS WILD-TYPE | 30 | 41 | 33 |
P value = 0.032 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 64 | 44 | 21 |
22Q LOSS MUTATED | 9 | 31 | 10 | 8 |
22Q LOSS WILD-TYPE | 24 | 33 | 34 | 13 |
P value = 0.00222 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
22Q LOSS MUTATED | 11 | 33 | 7 | 7 |
22Q LOSS WILD-TYPE | 23 | 31 | 36 | 14 |
P value = 0.0492 (Fisher's exact test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 58 | 39 |
22Q LOSS MUTATED | 16 | 25 | 17 |
22Q LOSS WILD-TYPE | 49 | 33 | 22 |
P value = 0.0276 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 34 | 58 | 11 | 35 | 23 |
22Q LOSS MUTATED | 12 | 29 | 4 | 6 | 7 |
22Q LOSS WILD-TYPE | 22 | 29 | 7 | 29 | 16 |
P value = 0.0244 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 71 | 53 | 18 | 19 |
22Q LOSS MUTATED | 33 | 11 | 6 | 8 |
22Q LOSS WILD-TYPE | 38 | 42 | 12 | 11 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
XP LOSS MUTATED | 22 | 7 | 19 |
XP LOSS WILD-TYPE | 38 | 56 | 20 |
P value = 0.00201 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 78 | 44 |
XP LOSS MUTATED | 9 | 33 | 6 |
XP LOSS WILD-TYPE | 31 | 45 | 38 |
P value = 0.0353 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 20 | 23 | 18 |
XP LOSS MUTATED | 7 | 8 | 8 | 1 |
XP LOSS WILD-TYPE | 9 | 12 | 15 | 17 |
P value = 0.0129 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 64 | 44 | 21 |
XP LOSS MUTATED | 10 | 27 | 9 | 2 |
XP LOSS WILD-TYPE | 23 | 37 | 35 | 19 |
P value = 0.00123 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
XP LOSS MUTATED | 7 | 29 | 11 | 1 |
XP LOSS WILD-TYPE | 27 | 35 | 32 | 20 |
P value = 0.00247 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 58 | 39 |
XP LOSS MUTATED | 13 | 27 | 8 |
XP LOSS WILD-TYPE | 52 | 31 | 31 |
P value = 0.0181 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
XP LOSS MUTATED | 15 | 23 | 7 | 3 |
XP LOSS WILD-TYPE | 51 | 31 | 11 | 21 |
P value = 0.0184 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 71 | 53 | 18 | 19 |
XP LOSS MUTATED | 27 | 13 | 7 | 1 |
XP LOSS WILD-TYPE | 44 | 40 | 11 | 18 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 60 | 63 | 39 |
XQ LOSS MUTATED | 22 | 7 | 20 |
XQ LOSS WILD-TYPE | 38 | 56 | 19 |
P value = 0.0013 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 78 | 44 |
XQ LOSS MUTATED | 9 | 34 | 6 |
XQ LOSS WILD-TYPE | 31 | 44 | 38 |
P value = 0.0244 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 20 | 23 | 18 |
XQ LOSS MUTATED | 7 | 9 | 8 | 1 |
XQ LOSS WILD-TYPE | 9 | 11 | 15 | 17 |
P value = 0.00749 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 33 | 64 | 44 | 21 |
XQ LOSS MUTATED | 10 | 28 | 9 | 2 |
XQ LOSS WILD-TYPE | 23 | 36 | 35 | 19 |
P value = 0.00076 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
XQ LOSS MUTATED | 7 | 30 | 11 | 1 |
XQ LOSS WILD-TYPE | 27 | 34 | 32 | 20 |
P value = 0.00377 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 58 | 39 |
XQ LOSS MUTATED | 13 | 27 | 9 |
XQ LOSS WILD-TYPE | 52 | 31 | 30 |
P value = 0.0108 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
XQ LOSS MUTATED | 15 | 24 | 7 | 3 |
XQ LOSS WILD-TYPE | 51 | 30 | 11 | 21 |
P value = 0.0131 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 71 | 53 | 18 | 19 |
XQ LOSS MUTATED | 28 | 13 | 7 | 1 |
XQ LOSS WILD-TYPE | 43 | 40 | 11 | 18 |
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PCPG-TP/19781941/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PCPG-TP/20140092/PCPG-TP.transferedmergedcluster.txt
-
Number of patients = 162
-
Number of significantly arm-level cnvs = 69
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.