This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.
Testing the association between mutation status of 23 genes and 10 molecular subtypes across 244 patients, 25 significant findings detected with P value < 0.05 and Q value < 0.25.
-
TP53 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
ATRX mutation correlated to 'CN_CNMF'.
-
RB1 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
NUMBL mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
KRTAP5-5 mutation correlated to 'RPPA_CHIERARCHICAL'.
-
LOR mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.
-
LHCGR mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
-
NF1 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nMutated (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
TP53 | 84 (34%) | 160 |
0.00047 (0.00958) |
0.00016 (0.00652) |
0.0206 (0.21) |
0.156 (0.552) |
0.00023 (0.00661) |
0.00022 (0.00661) |
0.00045 (0.00958) |
4e-05 (0.00287) |
0.00345 (0.061) |
0.00833 (0.12) |
RB1 | 24 (10%) | 220 |
0.104 (0.499) |
0.0137 (0.166) |
0.0755 (0.457) |
0.404 (0.787) |
0.0005 (0.00958) |
0.0101 (0.137) |
1e-05 (0.0023) |
0.00017 (0.00652) |
4e-05 (0.00287) |
0.00038 (0.00958) |
NF1 | 10 (4%) | 234 |
0.445 (0.831) |
0.162 (0.559) |
0.236 (0.651) |
0.0128 (0.163) |
0.081 (0.466) |
0.0219 (0.21) |
0.647 (1.00) |
0.739 (1.00) |
0.0467 (0.357) |
0.00507 (0.0833) |
LOR | 6 (2%) | 238 |
0.0226 (0.21) |
0.436 (0.823) |
0.0191 (0.21) |
0.0434 (0.357) |
0.663 (1.00) |
0.365 (0.777) |
0.146 (0.552) |
0.141 (0.551) |
||
ATRX | 37 (15%) | 207 |
5e-05 (0.00287) |
0.0481 (0.357) |
0.112 (0.525) |
0.618 (1.00) |
0.328 (0.746) |
0.155 (0.552) |
0.5 (0.889) |
0.0595 (0.411) |
0.766 (1.00) |
0.222 (0.651) |
NUMBL | 9 (4%) | 235 |
0.411 (0.789) |
0.266 (0.672) |
1 (1.00) |
0.141 (0.551) |
0.832 (1.00) |
0.55 (0.959) |
0.745 (1.00) |
0.735 (1.00) |
0.146 (0.552) |
0.00798 (0.12) |
KRTAP5-5 | 7 (3%) | 237 |
0.949 (1.00) |
0.101 (0.494) |
0.28 (0.692) |
0.0181 (0.208) |
0.0608 (0.411) |
0.121 (0.539) |
0.0987 (0.494) |
0.0565 (0.406) |
0.0648 (0.426) |
0.292 (0.693) |
LHCGR | 6 (2%) | 238 |
0.39 (0.786) |
0.189 (0.613) |
0.0475 (0.357) |
0.0989 (0.494) |
0.287 (0.692) |
0.0228 (0.21) |
0.658 (1.00) |
0.251 (0.651) |
0.726 (1.00) |
0.137 (0.551) |
MSH3 | 7 (3%) | 237 |
0.286 (0.692) |
0.116 (0.531) |
1 (1.00) |
0.714 (1.00) |
0.889 (1.00) |
0.0865 (0.485) |
0.75 (1.00) |
0.867 (1.00) |
0.284 (0.692) |
0.318 (0.732) |
EOMES | 6 (2%) | 238 |
0.938 (1.00) |
0.796 (1.00) |
0.721 (1.00) |
0.726 (1.00) |
1 (1.00) |
1 (1.00) |
0.575 (0.987) |
0.401 (0.787) |
1 (1.00) |
0.796 (1.00) |
PKD2 | 6 (2%) | 238 |
0.781 (1.00) |
0.86 (1.00) |
1 (1.00) |
0.725 (1.00) |
1 (1.00) |
0.344 (0.754) |
0.369 (0.78) |
0.22 (0.651) |
0.212 (0.651) |
0.599 (1.00) |
LTBP3 | 5 (2%) | 239 |
0.134 (0.551) |
0.636 (1.00) |
0.289 (0.692) |
0.827 (1.00) |
0.219 (0.651) |
0.128 (0.551) |
0.0723 (0.457) |
0.0735 (0.457) |
0.122 (0.539) |
0.244 (0.651) |
SHROOM4 | 8 (3%) | 236 |
0.405 (0.787) |
0.665 (1.00) |
0.384 (0.784) |
0.517 (0.909) |
0.427 (0.813) |
0.938 (1.00) |
0.468 (0.861) |
0.377 (0.783) |
0.874 (1.00) |
0.833 (1.00) |
WNK1 | 6 (2%) | 238 |
0.352 (0.763) |
0.86 (1.00) |
0.355 (0.763) |
0.682 (1.00) |
0.769 (1.00) |
0.882 (1.00) |
0.867 (1.00) |
0.664 (1.00) |
1 (1.00) |
0.988 (1.00) |
ANP32E | 4 (2%) | 240 |
0.8 (1.00) |
0.0476 (0.357) |
0.396 (0.787) |
0.935 (1.00) |
0.204 (0.642) |
0.245 (0.651) |
0.198 (0.632) |
0.449 (0.832) |
||
PTEN | 7 (3%) | 237 |
0.581 (0.99) |
0.249 (0.651) |
1 (1.00) |
0.663 (1.00) |
0.132 (0.551) |
0.262 (0.67) |
0.154 (0.552) |
0.502 (0.889) |
0.239 (0.651) |
0.31 (0.728) |
TRAF7 | 4 (2%) | 240 |
0.407 (0.787) |
0.596 (1.00) |
0.677 (1.00) |
0.171 (0.571) |
0.378 (0.783) |
0.151 (0.552) |
1 (1.00) |
1 (1.00) |
0.476 (0.863) |
0.317 (0.732) |
MEGF9 | 3 (1%) | 241 |
1 (1.00) |
0.901 (1.00) |
0.794 (1.00) |
0.93 (1.00) |
0.8 (1.00) |
0.704 (1.00) |
1 (1.00) |
0.935 (1.00) |
||
CABLES1 | 3 (1%) | 241 |
1 (1.00) |
0.239 (0.651) |
0.341 (0.754) |
0.629 (1.00) |
0.165 (0.559) |
0.852 (1.00) |
0.606 (1.00) |
0.847 (1.00) |
||
COL18A1 | 7 (3%) | 237 |
0.903 (1.00) |
0.689 (1.00) |
0.477 (0.863) |
0.67 (1.00) |
0.878 (1.00) |
0.614 (1.00) |
0.79 (1.00) |
0.557 (0.963) |
0.724 (1.00) |
0.223 (0.651) |
FOXD2 | 3 (1%) | 241 |
0.844 (1.00) |
0.775 (1.00) |
1 (1.00) |
0.385 (0.784) |
0.798 (1.00) |
0.494 (0.888) |
1 (1.00) |
0.0992 (0.494) |
||
MMP17 | 3 (1%) | 241 |
0.841 (1.00) |
0.163 (0.559) |
0.242 (0.651) |
0.745 (1.00) |
0.252 (0.651) |
0.805 (1.00) |
0.23 (0.651) |
0.133 (0.551) |
||
ASTE1 | 3 (1%) | 241 |
0.0901 (0.494) |
0.0785 (0.463) |
0.344 (0.754) |
0.0453 (0.357) |
0.233 (0.651) |
0.0972 (0.494) |
0.183 (0.6) |
0.334 (0.752) |
P value = 0.00047 (Fisher's exact test), Q value = 0.0096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
TP53 MUTATED | 27 | 24 | 30 | 1 |
TP53 WILD-TYPE | 35 | 59 | 40 | 24 |
P value = 0.00016 (Fisher's exact test), Q value = 0.0065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
TP53 MUTATED | 9 | 14 | 33 | 6 | 19 | 2 | 1 |
TP53 WILD-TYPE | 36 | 32 | 24 | 29 | 26 | 11 | 2 |
P value = 0.0206 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 42 | 54 | 56 |
TP53 MUTATED | 11 | 15 | 26 | 20 |
TP53 WILD-TYPE | 44 | 27 | 28 | 36 |
P value = 0.156 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 25 | 34 | 46 | 61 | 19 | 22 |
TP53 MUTATED | 5 | 10 | 18 | 28 | 4 | 7 |
TP53 WILD-TYPE | 20 | 24 | 28 | 33 | 15 | 15 |
P value = 0.00023 (Fisher's exact test), Q value = 0.0066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
TP53 MUTATED | 36 | 36 | 11 |
TP53 WILD-TYPE | 73 | 35 | 51 |
P value = 0.00022 (Fisher's exact test), Q value = 0.0066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
TP53 MUTATED | 12 | 8 | 25 | 4 | 9 | 11 | 14 |
TP53 WILD-TYPE | 30 | 15 | 22 | 42 | 17 | 14 | 19 |
P value = 0.00045 (Fisher's exact test), Q value = 0.0096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
TP53 MUTATED | 26 | 12 | 46 |
TP53 WILD-TYPE | 76 | 37 | 46 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
TP53 MUTATED | 23 | 8 | 49 | 4 |
TP53 WILD-TYPE | 53 | 42 | 46 | 18 |
P value = 0.00345 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 60 | 46 |
TP53 MUTATED | 18 | 30 | 15 |
TP53 WILD-TYPE | 61 | 30 | 31 |
P value = 0.00833 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 24 | 29 | 33 | 24 | 11 | 21 | 21 | 22 |
TP53 MUTATED | 4 | 6 | 17 | 12 | 6 | 9 | 5 | 4 |
TP53 WILD-TYPE | 20 | 23 | 16 | 12 | 5 | 12 | 16 | 18 |
P value = 5e-05 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
ATRX MUTATED | 15 | 2 | 17 | 2 |
ATRX WILD-TYPE | 47 | 81 | 53 | 23 |
P value = 0.0481 (Fisher's exact test), Q value = 0.36
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
ATRX MUTATED | 13 | 4 | 7 | 2 | 10 | 1 | 0 |
ATRX WILD-TYPE | 32 | 42 | 50 | 33 | 35 | 12 | 3 |
P value = 0.112 (Fisher's exact test), Q value = 0.52
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 42 | 54 | 56 |
ATRX MUTATED | 9 | 11 | 5 | 6 |
ATRX WILD-TYPE | 46 | 31 | 49 | 50 |
P value = 0.618 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 25 | 34 | 46 | 61 | 19 | 22 |
ATRX MUTATED | 5 | 5 | 8 | 8 | 4 | 1 |
ATRX WILD-TYPE | 20 | 29 | 38 | 53 | 15 | 21 |
P value = 0.328 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
ATRX MUTATED | 21 | 9 | 7 |
ATRX WILD-TYPE | 88 | 62 | 55 |
P value = 0.155 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
ATRX MUTATED | 10 | 2 | 3 | 5 | 4 | 6 | 7 |
ATRX WILD-TYPE | 32 | 21 | 44 | 41 | 22 | 19 | 26 |
P value = 0.5 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
ATRX MUTATED | 17 | 9 | 11 |
ATRX WILD-TYPE | 85 | 40 | 81 |
P value = 0.0595 (Fisher's exact test), Q value = 0.41
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
ATRX MUTATED | 16 | 9 | 12 | 0 |
ATRX WILD-TYPE | 60 | 41 | 83 | 22 |
P value = 0.766 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 60 | 46 |
ATRX MUTATED | 14 | 8 | 8 |
ATRX WILD-TYPE | 65 | 52 | 38 |
P value = 0.222 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 24 | 29 | 33 | 24 | 11 | 21 | 21 | 22 |
ATRX MUTATED | 5 | 7 | 4 | 5 | 1 | 5 | 3 | 0 |
ATRX WILD-TYPE | 19 | 22 | 29 | 19 | 10 | 16 | 18 | 22 |
P value = 0.104 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
RB1 MUTATED | 11 | 7 | 4 | 1 |
RB1 WILD-TYPE | 51 | 76 | 66 | 24 |
P value = 0.0137 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
RB1 MUTATED | 3 | 3 | 13 | 1 | 2 | 1 | 1 |
RB1 WILD-TYPE | 42 | 43 | 44 | 34 | 43 | 12 | 2 |
P value = 0.0755 (Fisher's exact test), Q value = 0.46
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 42 | 54 | 56 |
RB1 MUTATED | 3 | 1 | 9 | 6 |
RB1 WILD-TYPE | 52 | 41 | 45 | 50 |
P value = 0.404 (Fisher's exact test), Q value = 0.79
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 25 | 34 | 46 | 61 | 19 | 22 |
RB1 MUTATED | 2 | 3 | 2 | 10 | 1 | 1 |
RB1 WILD-TYPE | 23 | 31 | 44 | 51 | 18 | 21 |
P value = 5e-04 (Fisher's exact test), Q value = 0.0096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
RB1 MUTATED | 8 | 15 | 1 |
RB1 WILD-TYPE | 101 | 56 | 61 |
P value = 0.0101 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
RB1 MUTATED | 3 | 2 | 12 | 2 | 0 | 3 | 2 |
RB1 WILD-TYPE | 39 | 21 | 35 | 44 | 26 | 22 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
RB1 MUTATED | 0 | 6 | 18 |
RB1 WILD-TYPE | 102 | 43 | 74 |
P value = 0.00017 (Fisher's exact test), Q value = 0.0065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
RB1 MUTATED | 1 | 4 | 19 | 0 |
RB1 WILD-TYPE | 75 | 46 | 76 | 22 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 60 | 46 |
RB1 MUTATED | 0 | 11 | 7 |
RB1 WILD-TYPE | 79 | 49 | 39 |
P value = 0.00038 (Fisher's exact test), Q value = 0.0096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 24 | 29 | 33 | 24 | 11 | 21 | 21 | 22 |
RB1 MUTATED | 3 | 0 | 6 | 7 | 2 | 0 | 0 | 0 |
RB1 WILD-TYPE | 21 | 29 | 27 | 17 | 9 | 21 | 21 | 22 |
P value = 0.411 (Fisher's exact test), Q value = 0.79
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
NUMBL MUTATED | 2 | 2 | 5 | 0 |
NUMBL WILD-TYPE | 60 | 81 | 65 | 25 |
P value = 0.266 (Fisher's exact test), Q value = 0.67
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
NUMBL MUTATED | 0 | 2 | 1 | 1 | 4 | 1 | 0 |
NUMBL WILD-TYPE | 45 | 44 | 56 | 34 | 41 | 12 | 3 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 42 | 54 | 56 |
NUMBL MUTATED | 2 | 2 | 2 | 2 |
NUMBL WILD-TYPE | 53 | 40 | 52 | 54 |
P value = 0.141 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 25 | 34 | 46 | 61 | 19 | 22 |
NUMBL MUTATED | 0 | 0 | 5 | 2 | 1 | 0 |
NUMBL WILD-TYPE | 25 | 34 | 41 | 59 | 18 | 22 |
P value = 0.832 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
NUMBL MUTATED | 4 | 2 | 3 |
NUMBL WILD-TYPE | 105 | 69 | 59 |
P value = 0.55 (Fisher's exact test), Q value = 0.96
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
NUMBL MUTATED | 1 | 0 | 1 | 2 | 3 | 1 | 1 |
NUMBL WILD-TYPE | 41 | 23 | 46 | 44 | 23 | 24 | 32 |
P value = 0.745 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
NUMBL MUTATED | 5 | 1 | 3 |
NUMBL WILD-TYPE | 97 | 48 | 89 |
P value = 0.735 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
NUMBL MUTATED | 4 | 1 | 3 | 1 |
NUMBL WILD-TYPE | 72 | 49 | 92 | 21 |
P value = 0.146 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 60 | 46 |
NUMBL MUTATED | 5 | 0 | 2 |
NUMBL WILD-TYPE | 74 | 60 | 44 |
P value = 0.00798 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 24 | 29 | 33 | 24 | 11 | 21 | 21 | 22 |
NUMBL MUTATED | 1 | 0 | 0 | 2 | 0 | 4 | 0 | 0 |
NUMBL WILD-TYPE | 23 | 29 | 33 | 22 | 11 | 17 | 21 | 22 |
P value = 0.286 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
MSH3 MUTATED | 0 | 4 | 2 | 1 |
MSH3 WILD-TYPE | 62 | 79 | 68 | 24 |
P value = 0.116 (Fisher's exact test), Q value = 0.53
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
MSH3 MUTATED | 1 | 2 | 1 | 0 | 1 | 1 | 1 |
MSH3 WILD-TYPE | 44 | 44 | 56 | 35 | 44 | 12 | 2 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 42 | 54 | 56 |
MSH3 MUTATED | 2 | 1 | 1 | 2 |
MSH3 WILD-TYPE | 53 | 41 | 53 | 54 |
P value = 0.714 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 25 | 34 | 46 | 61 | 19 | 22 |
MSH3 MUTATED | 1 | 2 | 1 | 1 | 0 | 1 |
MSH3 WILD-TYPE | 24 | 32 | 45 | 60 | 19 | 21 |
P value = 0.889 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
MSH3 MUTATED | 4 | 2 | 1 |
MSH3 WILD-TYPE | 105 | 69 | 61 |
P value = 0.0865 (Fisher's exact test), Q value = 0.49
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
MSH3 MUTATED | 0 | 3 | 1 | 1 | 1 | 1 | 0 |
MSH3 WILD-TYPE | 42 | 20 | 46 | 45 | 25 | 24 | 33 |
P value = 0.75 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
MSH3 MUTATED | 2 | 2 | 2 |
MSH3 WILD-TYPE | 100 | 47 | 90 |
P value = 0.867 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
MSH3 MUTATED | 2 | 2 | 2 | 0 |
MSH3 WILD-TYPE | 74 | 48 | 93 | 22 |
P value = 0.284 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 60 | 46 |
MSH3 MUTATED | 2 | 0 | 2 |
MSH3 WILD-TYPE | 77 | 60 | 44 |
P value = 0.318 (Fisher's exact test), Q value = 0.73
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 24 | 29 | 33 | 24 | 11 | 21 | 21 | 22 |
MSH3 MUTATED | 1 | 1 | 0 | 0 | 0 | 0 | 2 | 0 |
MSH3 WILD-TYPE | 23 | 28 | 33 | 24 | 11 | 21 | 19 | 22 |
P value = 0.938 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
EOMES MUTATED | 1 | 3 | 2 | 0 |
EOMES WILD-TYPE | 61 | 80 | 68 | 25 |
P value = 0.796 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
EOMES MUTATED | 1 | 1 | 1 | 1 | 1 | 1 | 0 |
EOMES WILD-TYPE | 44 | 45 | 56 | 34 | 44 | 12 | 3 |
P value = 0.721 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 42 | 54 | 56 |
EOMES MUTATED | 1 | 1 | 0 | 2 |
EOMES WILD-TYPE | 54 | 41 | 54 | 54 |
P value = 0.726 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 25 | 34 | 46 | 61 | 19 | 22 |
EOMES MUTATED | 1 | 0 | 2 | 1 | 0 | 0 |
EOMES WILD-TYPE | 24 | 34 | 44 | 60 | 19 | 22 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
EOMES MUTATED | 3 | 2 | 1 |
EOMES WILD-TYPE | 106 | 69 | 61 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
EOMES MUTATED | 1 | 0 | 1 | 1 | 1 | 1 | 1 |
EOMES WILD-TYPE | 41 | 23 | 46 | 45 | 25 | 24 | 32 |
P value = 0.575 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
EOMES MUTATED | 4 | 1 | 1 |
EOMES WILD-TYPE | 98 | 48 | 91 |
P value = 0.401 (Fisher's exact test), Q value = 0.79
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
EOMES MUTATED | 3 | 0 | 2 | 1 |
EOMES WILD-TYPE | 73 | 50 | 93 | 21 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 60 | 46 |
EOMES MUTATED | 3 | 2 | 1 |
EOMES WILD-TYPE | 76 | 58 | 45 |
P value = 0.796 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 24 | 29 | 33 | 24 | 11 | 21 | 21 | 22 |
EOMES MUTATED | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 1 |
EOMES WILD-TYPE | 24 | 28 | 32 | 24 | 10 | 20 | 20 | 21 |
P value = 0.781 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
PKD2 MUTATED | 1 | 2 | 3 | 0 |
PKD2 WILD-TYPE | 61 | 81 | 67 | 25 |
P value = 0.86 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
PKD2 MUTATED | 0 | 2 | 2 | 1 | 1 | 0 | 0 |
PKD2 WILD-TYPE | 45 | 44 | 55 | 34 | 44 | 13 | 3 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 42 | 54 | 56 |
PKD2 MUTATED | 1 | 1 | 1 | 1 |
PKD2 WILD-TYPE | 54 | 41 | 53 | 55 |
P value = 0.725 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 25 | 34 | 46 | 61 | 19 | 22 |
PKD2 MUTATED | 1 | 0 | 2 | 1 | 0 | 0 |
PKD2 WILD-TYPE | 24 | 34 | 44 | 60 | 19 | 22 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
PKD2 MUTATED | 3 | 2 | 1 |
PKD2 WILD-TYPE | 106 | 69 | 61 |
P value = 0.344 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
PKD2 MUTATED | 0 | 1 | 2 | 1 | 2 | 0 | 0 |
PKD2 WILD-TYPE | 42 | 22 | 45 | 45 | 24 | 25 | 33 |
P value = 0.369 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
PKD2 MUTATED | 1 | 2 | 3 |
PKD2 WILD-TYPE | 101 | 47 | 89 |
P value = 0.22 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
PKD2 MUTATED | 0 | 2 | 3 | 1 |
PKD2 WILD-TYPE | 76 | 48 | 92 | 21 |
P value = 0.212 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 60 | 46 |
PKD2 MUTATED | 1 | 1 | 3 |
PKD2 WILD-TYPE | 78 | 59 | 43 |
P value = 0.599 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 24 | 29 | 33 | 24 | 11 | 21 | 21 | 22 |
PKD2 MUTATED | 0 | 0 | 1 | 2 | 0 | 0 | 1 | 1 |
PKD2 WILD-TYPE | 24 | 29 | 32 | 22 | 11 | 21 | 20 | 21 |
P value = 0.134 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
LTBP3 MUTATED | 0 | 1 | 4 | 0 |
LTBP3 WILD-TYPE | 62 | 82 | 66 | 25 |
P value = 0.636 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
LTBP3 MUTATED | 0 | 1 | 3 | 0 | 1 | 0 | 0 |
LTBP3 WILD-TYPE | 45 | 45 | 54 | 35 | 44 | 13 | 3 |
P value = 0.289 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 42 | 54 | 56 |
LTBP3 MUTATED | 0 | 1 | 0 | 2 |
LTBP3 WILD-TYPE | 55 | 41 | 54 | 54 |
P value = 0.827 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 25 | 34 | 46 | 61 | 19 | 22 |
LTBP3 MUTATED | 0 | 0 | 2 | 1 | 0 | 0 |
LTBP3 WILD-TYPE | 25 | 34 | 44 | 60 | 19 | 22 |
P value = 0.219 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
LTBP3 MUTATED | 2 | 3 | 0 |
LTBP3 WILD-TYPE | 107 | 68 | 62 |
P value = 0.128 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
LTBP3 MUTATED | 0 | 0 | 2 | 0 | 2 | 1 | 0 |
LTBP3 WILD-TYPE | 42 | 23 | 45 | 46 | 24 | 24 | 33 |
P value = 0.0723 (Fisher's exact test), Q value = 0.46
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
LTBP3 MUTATED | 0 | 1 | 4 |
LTBP3 WILD-TYPE | 102 | 48 | 88 |
P value = 0.0735 (Fisher's exact test), Q value = 0.46
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
LTBP3 MUTATED | 0 | 0 | 5 | 0 |
LTBP3 WILD-TYPE | 76 | 50 | 90 | 22 |
P value = 0.122 (Fisher's exact test), Q value = 0.54
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 60 | 46 |
LTBP3 MUTATED | 0 | 3 | 1 |
LTBP3 WILD-TYPE | 79 | 57 | 45 |
P value = 0.244 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 24 | 29 | 33 | 24 | 11 | 21 | 21 | 22 |
LTBP3 MUTATED | 0 | 0 | 3 | 1 | 0 | 0 | 0 | 0 |
LTBP3 WILD-TYPE | 24 | 29 | 30 | 23 | 11 | 21 | 21 | 22 |
P value = 0.405 (Fisher's exact test), Q value = 0.79
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
SHROOM4 MUTATED | 2 | 1 | 4 | 1 |
SHROOM4 WILD-TYPE | 60 | 82 | 66 | 24 |
P value = 0.665 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
SHROOM4 MUTATED | 1 | 2 | 3 | 0 | 1 | 1 | 0 |
SHROOM4 WILD-TYPE | 44 | 44 | 54 | 35 | 44 | 12 | 3 |
P value = 0.384 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 42 | 54 | 56 |
SHROOM4 MUTATED | 1 | 2 | 4 | 1 |
SHROOM4 WILD-TYPE | 54 | 40 | 50 | 55 |
P value = 0.517 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 25 | 34 | 46 | 61 | 19 | 22 |
SHROOM4 MUTATED | 1 | 0 | 3 | 4 | 0 | 0 |
SHROOM4 WILD-TYPE | 24 | 34 | 43 | 57 | 19 | 22 |
P value = 0.427 (Fisher's exact test), Q value = 0.81
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
SHROOM4 MUTATED | 3 | 4 | 1 |
SHROOM4 WILD-TYPE | 106 | 67 | 61 |
P value = 0.938 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
SHROOM4 MUTATED | 1 | 0 | 3 | 1 | 1 | 1 | 1 |
SHROOM4 WILD-TYPE | 41 | 23 | 44 | 45 | 25 | 24 | 32 |
P value = 0.468 (Fisher's exact test), Q value = 0.86
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
SHROOM4 MUTATED | 2 | 1 | 5 |
SHROOM4 WILD-TYPE | 100 | 48 | 87 |
P value = 0.377 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
SHROOM4 MUTATED | 3 | 0 | 5 | 0 |
SHROOM4 WILD-TYPE | 73 | 50 | 90 | 22 |
P value = 0.874 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 60 | 46 |
SHROOM4 MUTATED | 2 | 2 | 2 |
SHROOM4 WILD-TYPE | 77 | 58 | 44 |
P value = 0.833 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 24 | 29 | 33 | 24 | 11 | 21 | 21 | 22 |
SHROOM4 MUTATED | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 0 |
SHROOM4 WILD-TYPE | 24 | 28 | 32 | 23 | 10 | 20 | 20 | 22 |
P value = 0.352 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
WNK1 MUTATED | 0 | 4 | 2 | 0 |
WNK1 WILD-TYPE | 62 | 79 | 68 | 25 |
P value = 0.86 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
WNK1 MUTATED | 1 | 2 | 2 | 1 | 0 | 0 | 0 |
WNK1 WILD-TYPE | 44 | 44 | 55 | 34 | 45 | 13 | 3 |
P value = 0.355 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 42 | 54 | 56 |
WNK1 MUTATED | 0 | 1 | 3 | 2 |
WNK1 WILD-TYPE | 55 | 41 | 51 | 54 |
P value = 0.682 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 25 | 34 | 46 | 61 | 19 | 22 |
WNK1 MUTATED | 0 | 0 | 2 | 2 | 1 | 1 |
WNK1 WILD-TYPE | 25 | 34 | 44 | 59 | 18 | 21 |
P value = 0.769 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
WNK1 MUTATED | 2 | 2 | 2 |
WNK1 WILD-TYPE | 107 | 69 | 60 |
P value = 0.882 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
WNK1 MUTATED | 1 | 0 | 2 | 2 | 1 | 0 | 0 |
WNK1 WILD-TYPE | 41 | 23 | 45 | 44 | 25 | 25 | 33 |
P value = 0.867 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
WNK1 MUTATED | 2 | 1 | 3 |
WNK1 WILD-TYPE | 100 | 48 | 89 |
P value = 0.664 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
WNK1 MUTATED | 1 | 1 | 3 | 1 |
WNK1 WILD-TYPE | 75 | 49 | 92 | 21 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 60 | 46 |
WNK1 MUTATED | 2 | 1 | 1 |
WNK1 WILD-TYPE | 77 | 59 | 45 |
P value = 0.988 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 24 | 29 | 33 | 24 | 11 | 21 | 21 | 22 |
WNK1 MUTATED | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 1 |
WNK1 WILD-TYPE | 24 | 28 | 32 | 23 | 11 | 21 | 21 | 21 |
P value = 0.8 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
ANP32E MUTATED | 2 | 1 | 1 | 0 |
ANP32E WILD-TYPE | 60 | 82 | 69 | 25 |
P value = 0.0476 (Fisher's exact test), Q value = 0.36
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
ANP32E MUTATED | 0 | 1 | 1 | 0 | 0 | 2 | 0 |
ANP32E WILD-TYPE | 45 | 45 | 56 | 35 | 45 | 11 | 3 |
P value = 0.396 (Fisher's exact test), Q value = 0.79
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 42 | 54 | 56 |
ANP32E MUTATED | 0 | 0 | 2 | 1 |
ANP32E WILD-TYPE | 55 | 42 | 52 | 55 |
P value = 0.935 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 25 | 34 | 46 | 61 | 19 | 22 |
ANP32E MUTATED | 0 | 0 | 1 | 2 | 0 | 0 |
ANP32E WILD-TYPE | 25 | 34 | 45 | 59 | 19 | 22 |
P value = 0.204 (Fisher's exact test), Q value = 0.64
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
ANP32E MUTATED | 1 | 3 | 0 |
ANP32E WILD-TYPE | 108 | 68 | 62 |
P value = 0.245 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
ANP32E MUTATED | 1 | 0 | 1 | 0 | 0 | 2 | 0 |
ANP32E WILD-TYPE | 41 | 23 | 46 | 46 | 26 | 23 | 33 |
P value = 0.198 (Fisher's exact test), Q value = 0.63
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
ANP32E MUTATED | 0 | 1 | 3 |
ANP32E WILD-TYPE | 102 | 48 | 89 |
P value = 0.449 (Fisher's exact test), Q value = 0.83
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
ANP32E MUTATED | 0 | 1 | 3 | 0 |
ANP32E WILD-TYPE | 76 | 49 | 92 | 22 |
P value = 0.581 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
PTEN MUTATED | 3 | 2 | 1 | 1 |
PTEN WILD-TYPE | 59 | 81 | 69 | 24 |
P value = 0.249 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
PTEN MUTATED | 0 | 0 | 4 | 2 | 1 | 0 | 0 |
PTEN WILD-TYPE | 45 | 46 | 53 | 33 | 44 | 13 | 3 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 42 | 54 | 56 |
PTEN MUTATED | 1 | 1 | 1 | 1 |
PTEN WILD-TYPE | 54 | 41 | 53 | 55 |
P value = 0.663 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 25 | 34 | 46 | 61 | 19 | 22 |
PTEN MUTATED | 1 | 0 | 1 | 1 | 0 | 1 |
PTEN WILD-TYPE | 24 | 34 | 45 | 60 | 19 | 21 |
P value = 0.132 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
PTEN MUTATED | 1 | 4 | 2 |
PTEN WILD-TYPE | 108 | 67 | 60 |
P value = 0.262 (Fisher's exact test), Q value = 0.67
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
PTEN MUTATED | 0 | 0 | 4 | 2 | 0 | 0 | 1 |
PTEN WILD-TYPE | 42 | 23 | 43 | 44 | 26 | 25 | 32 |
P value = 0.154 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
PTEN MUTATED | 1 | 1 | 5 |
PTEN WILD-TYPE | 101 | 48 | 87 |
P value = 0.502 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
PTEN MUTATED | 1 | 1 | 5 | 0 |
PTEN WILD-TYPE | 75 | 49 | 90 | 22 |
P value = 0.239 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 60 | 46 |
PTEN MUTATED | 1 | 4 | 1 |
PTEN WILD-TYPE | 78 | 56 | 45 |
P value = 0.31 (Fisher's exact test), Q value = 0.73
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 24 | 29 | 33 | 24 | 11 | 21 | 21 | 22 |
PTEN MUTATED | 1 | 0 | 3 | 2 | 0 | 0 | 0 | 0 |
PTEN WILD-TYPE | 23 | 29 | 30 | 22 | 11 | 21 | 21 | 22 |
P value = 0.949 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
KRTAP5-5 MUTATED | 2 | 2 | 2 | 1 |
KRTAP5-5 WILD-TYPE | 60 | 81 | 68 | 24 |
P value = 0.101 (Fisher's exact test), Q value = 0.49
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
KRTAP5-5 MUTATED | 3 | 1 | 0 | 3 | 0 | 0 | 0 |
KRTAP5-5 WILD-TYPE | 42 | 45 | 57 | 32 | 45 | 13 | 3 |
P value = 0.28 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 42 | 54 | 56 |
KRTAP5-5 MUTATED | 3 | 2 | 0 | 1 |
KRTAP5-5 WILD-TYPE | 52 | 40 | 54 | 55 |
P value = 0.0181 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 25 | 34 | 46 | 61 | 19 | 22 |
KRTAP5-5 MUTATED | 1 | 3 | 0 | 0 | 0 | 2 |
KRTAP5-5 WILD-TYPE | 24 | 31 | 46 | 61 | 19 | 20 |
P value = 0.0608 (Fisher's exact test), Q value = 0.41
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
KRTAP5-5 MUTATED | 3 | 0 | 4 |
KRTAP5-5 WILD-TYPE | 106 | 71 | 58 |
P value = 0.121 (Fisher's exact test), Q value = 0.54
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
KRTAP5-5 MUTATED | 2 | 1 | 0 | 4 | 0 | 0 | 0 |
KRTAP5-5 WILD-TYPE | 40 | 22 | 47 | 42 | 26 | 25 | 33 |
P value = 0.0987 (Fisher's exact test), Q value = 0.49
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
KRTAP5-5 MUTATED | 6 | 0 | 1 |
KRTAP5-5 WILD-TYPE | 96 | 49 | 91 |
P value = 0.0565 (Fisher's exact test), Q value = 0.41
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
KRTAP5-5 MUTATED | 4 | 0 | 1 | 2 |
KRTAP5-5 WILD-TYPE | 72 | 50 | 94 | 20 |
P value = 0.0648 (Fisher's exact test), Q value = 0.43
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 60 | 46 |
KRTAP5-5 MUTATED | 6 | 1 | 0 |
KRTAP5-5 WILD-TYPE | 73 | 59 | 46 |
P value = 0.292 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 24 | 29 | 33 | 24 | 11 | 21 | 21 | 22 |
KRTAP5-5 MUTATED | 1 | 3 | 0 | 1 | 0 | 0 | 0 | 2 |
KRTAP5-5 WILD-TYPE | 23 | 26 | 33 | 23 | 11 | 21 | 21 | 20 |
P value = 0.407 (Fisher's exact test), Q value = 0.79
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
TRAF7 MUTATED | 1 | 2 | 0 | 1 |
TRAF7 WILD-TYPE | 61 | 81 | 70 | 24 |
P value = 0.596 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
TRAF7 MUTATED | 2 | 1 | 0 | 0 | 1 | 0 | 0 |
TRAF7 WILD-TYPE | 43 | 45 | 57 | 35 | 44 | 13 | 3 |
P value = 0.677 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 42 | 54 | 56 |
TRAF7 MUTATED | 2 | 1 | 0 | 1 |
TRAF7 WILD-TYPE | 53 | 41 | 54 | 55 |
P value = 0.171 (Fisher's exact test), Q value = 0.57
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 25 | 34 | 46 | 61 | 19 | 22 |
TRAF7 MUTATED | 2 | 1 | 1 | 0 | 0 | 0 |
TRAF7 WILD-TYPE | 23 | 33 | 45 | 61 | 19 | 22 |
P value = 0.378 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
TRAF7 MUTATED | 3 | 0 | 1 |
TRAF7 WILD-TYPE | 106 | 71 | 61 |
P value = 0.151 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
TRAF7 MUTATED | 2 | 0 | 0 | 0 | 0 | 0 | 2 |
TRAF7 WILD-TYPE | 40 | 23 | 47 | 46 | 26 | 25 | 31 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
TRAF7 MUTATED | 2 | 1 | 1 |
TRAF7 WILD-TYPE | 100 | 48 | 91 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
TRAF7 MUTATED | 1 | 1 | 2 | 0 |
TRAF7 WILD-TYPE | 75 | 49 | 93 | 22 |
P value = 0.476 (Fisher's exact test), Q value = 0.86
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 60 | 46 |
TRAF7 MUTATED | 1 | 2 | 0 |
TRAF7 WILD-TYPE | 78 | 58 | 46 |
P value = 0.317 (Fisher's exact test), Q value = 0.73
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 24 | 29 | 33 | 24 | 11 | 21 | 21 | 22 |
TRAF7 MUTATED | 0 | 1 | 0 | 2 | 0 | 0 | 0 | 0 |
TRAF7 WILD-TYPE | 24 | 28 | 33 | 22 | 11 | 21 | 21 | 22 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
MEGF9 MUTATED | 1 | 1 | 1 | 0 |
MEGF9 WILD-TYPE | 61 | 82 | 69 | 25 |
P value = 0.901 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
MEGF9 MUTATED | 1 | 0 | 1 | 0 | 1 | 0 | 0 |
MEGF9 WILD-TYPE | 44 | 46 | 56 | 35 | 44 | 13 | 3 |
P value = 0.794 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
MEGF9 MUTATED | 2 | 1 | 0 |
MEGF9 WILD-TYPE | 107 | 70 | 62 |
P value = 0.93 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
MEGF9 MUTATED | 1 | 0 | 1 | 0 | 0 | 0 | 1 |
MEGF9 WILD-TYPE | 41 | 23 | 46 | 46 | 26 | 25 | 32 |
P value = 0.8 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
MEGF9 MUTATED | 1 | 1 | 1 |
MEGF9 WILD-TYPE | 101 | 48 | 91 |
P value = 0.704 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
MEGF9 MUTATED | 2 | 0 | 1 | 0 |
MEGF9 WILD-TYPE | 74 | 50 | 94 | 22 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 60 | 46 |
MEGF9 MUTATED | 1 | 1 | 1 |
MEGF9 WILD-TYPE | 78 | 59 | 45 |
P value = 0.935 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 24 | 29 | 33 | 24 | 11 | 21 | 21 | 22 |
MEGF9 MUTATED | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 0 |
MEGF9 WILD-TYPE | 24 | 28 | 32 | 24 | 11 | 21 | 20 | 22 |
P value = 0.0226 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
LOR MUTATED | 0 | 2 | 1 | 3 |
LOR WILD-TYPE | 62 | 81 | 69 | 22 |
P value = 0.436 (Fisher's exact test), Q value = 0.82
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
LOR MUTATED | 1 | 2 | 0 | 1 | 1 | 1 | 0 |
LOR WILD-TYPE | 44 | 44 | 57 | 34 | 44 | 12 | 3 |
P value = 0.0191 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 42 | 54 | 56 |
LOR MUTATED | 4 | 1 | 0 | 0 |
LOR WILD-TYPE | 51 | 41 | 54 | 56 |
P value = 0.0434 (Fisher's exact test), Q value = 0.36
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 25 | 34 | 46 | 61 | 19 | 22 |
LOR MUTATED | 1 | 3 | 0 | 0 | 0 | 1 |
LOR WILD-TYPE | 24 | 31 | 46 | 61 | 19 | 21 |
P value = 0.663 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
LOR MUTATED | 4 | 1 | 1 |
LOR WILD-TYPE | 105 | 70 | 61 |
P value = 0.365 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
LOR MUTATED | 1 | 2 | 0 | 1 | 0 | 1 | 1 |
LOR WILD-TYPE | 41 | 21 | 47 | 45 | 26 | 24 | 32 |
P value = 0.146 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
LOR MUTATED | 5 | 0 | 1 |
LOR WILD-TYPE | 97 | 49 | 91 |
P value = 0.141 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
LOR MUTATED | 4 | 0 | 1 | 1 |
LOR WILD-TYPE | 72 | 50 | 94 | 21 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
CABLES1 MUTATED | 1 | 1 | 1 | 0 |
CABLES1 WILD-TYPE | 61 | 82 | 69 | 25 |
P value = 0.239 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
CABLES1 MUTATED | 1 | 0 | 1 | 0 | 0 | 1 | 0 |
CABLES1 WILD-TYPE | 44 | 46 | 56 | 35 | 45 | 12 | 3 |
P value = 0.341 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 42 | 54 | 56 |
CABLES1 MUTATED | 1 | 0 | 2 | 0 |
CABLES1 WILD-TYPE | 54 | 42 | 52 | 56 |
P value = 0.629 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 25 | 34 | 46 | 61 | 19 | 22 |
CABLES1 MUTATED | 1 | 0 | 0 | 2 | 0 | 0 |
CABLES1 WILD-TYPE | 24 | 34 | 46 | 59 | 19 | 22 |
P value = 0.165 (Fisher's exact test), Q value = 0.56
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
CABLES1 MUTATED | 0 | 2 | 1 |
CABLES1 WILD-TYPE | 109 | 69 | 61 |
P value = 0.852 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
CABLES1 MUTATED | 0 | 0 | 1 | 1 | 0 | 1 | 0 |
CABLES1 WILD-TYPE | 42 | 23 | 46 | 45 | 26 | 24 | 33 |
P value = 0.606 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
CABLES1 MUTATED | 1 | 0 | 2 |
CABLES1 WILD-TYPE | 101 | 49 | 90 |
P value = 0.847 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
CABLES1 MUTATED | 1 | 0 | 2 | 0 |
CABLES1 WILD-TYPE | 75 | 50 | 93 | 22 |
P value = 0.903 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
COL18A1 MUTATED | 2 | 2 | 3 | 0 |
COL18A1 WILD-TYPE | 60 | 81 | 67 | 25 |
P value = 0.689 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
COL18A1 MUTATED | 2 | 3 | 1 | 0 | 1 | 0 | 0 |
COL18A1 WILD-TYPE | 43 | 43 | 56 | 35 | 44 | 13 | 3 |
P value = 0.477 (Fisher's exact test), Q value = 0.86
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 42 | 54 | 56 |
COL18A1 MUTATED | 1 | 1 | 1 | 4 |
COL18A1 WILD-TYPE | 54 | 41 | 53 | 52 |
P value = 0.67 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 25 | 34 | 46 | 61 | 19 | 22 |
COL18A1 MUTATED | 1 | 1 | 3 | 1 | 1 | 0 |
COL18A1 WILD-TYPE | 24 | 33 | 43 | 60 | 18 | 22 |
P value = 0.878 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
COL18A1 MUTATED | 3 | 1 | 2 |
COL18A1 WILD-TYPE | 106 | 70 | 60 |
P value = 0.614 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
COL18A1 MUTATED | 1 | 0 | 1 | 2 | 2 | 0 | 0 |
COL18A1 WILD-TYPE | 41 | 23 | 46 | 44 | 24 | 25 | 33 |
P value = 0.79 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
COL18A1 MUTATED | 3 | 2 | 2 |
COL18A1 WILD-TYPE | 99 | 47 | 90 |
P value = 0.557 (Fisher's exact test), Q value = 0.96
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
COL18A1 MUTATED | 2 | 3 | 2 | 0 |
COL18A1 WILD-TYPE | 74 | 47 | 93 | 22 |
P value = 0.724 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 60 | 46 |
COL18A1 MUTATED | 2 | 1 | 2 |
COL18A1 WILD-TYPE | 77 | 59 | 44 |
P value = 0.223 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 24 | 29 | 33 | 24 | 11 | 21 | 21 | 22 |
COL18A1 MUTATED | 2 | 0 | 1 | 0 | 0 | 0 | 2 | 0 |
COL18A1 WILD-TYPE | 22 | 29 | 32 | 24 | 11 | 21 | 19 | 22 |
P value = 0.39 (Fisher's exact test), Q value = 0.79
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
LHCGR MUTATED | 1 | 1 | 4 | 0 |
LHCGR WILD-TYPE | 61 | 82 | 66 | 25 |
P value = 0.189 (Fisher's exact test), Q value = 0.61
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
LHCGR MUTATED | 1 | 0 | 0 | 2 | 3 | 0 | 0 |
LHCGR WILD-TYPE | 44 | 46 | 57 | 33 | 42 | 13 | 3 |
P value = 0.0475 (Fisher's exact test), Q value = 0.36
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 42 | 54 | 56 |
LHCGR MUTATED | 0 | 3 | 0 | 2 |
LHCGR WILD-TYPE | 55 | 39 | 54 | 54 |
P value = 0.0989 (Fisher's exact test), Q value = 0.49
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 25 | 34 | 46 | 61 | 19 | 22 |
LHCGR MUTATED | 0 | 0 | 3 | 0 | 1 | 1 |
LHCGR WILD-TYPE | 25 | 34 | 43 | 61 | 18 | 21 |
P value = 0.287 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
LHCGR MUTATED | 4 | 0 | 2 |
LHCGR WILD-TYPE | 105 | 71 | 60 |
P value = 0.0228 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
LHCGR MUTATED | 0 | 1 | 0 | 2 | 3 | 0 | 0 |
LHCGR WILD-TYPE | 42 | 22 | 47 | 44 | 23 | 25 | 33 |
P value = 0.658 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
LHCGR MUTATED | 3 | 0 | 3 |
LHCGR WILD-TYPE | 99 | 49 | 89 |
P value = 0.251 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
LHCGR MUTATED | 1 | 1 | 2 | 2 |
LHCGR WILD-TYPE | 75 | 49 | 93 | 20 |
P value = 0.726 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 60 | 46 |
LHCGR MUTATED | 2 | 1 | 2 |
LHCGR WILD-TYPE | 77 | 59 | 44 |
P value = 0.137 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 24 | 29 | 33 | 24 | 11 | 21 | 21 | 22 |
LHCGR MUTATED | 0 | 0 | 0 | 2 | 0 | 0 | 1 | 2 |
LHCGR WILD-TYPE | 24 | 29 | 33 | 22 | 11 | 21 | 20 | 20 |
P value = 0.445 (Fisher's exact test), Q value = 0.83
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
NF1 MUTATED | 1 | 3 | 5 | 1 |
NF1 WILD-TYPE | 61 | 80 | 65 | 24 |
P value = 0.162 (Fisher's exact test), Q value = 0.56
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
NF1 MUTATED | 1 | 5 | 0 | 2 | 2 | 0 | 0 |
NF1 WILD-TYPE | 44 | 41 | 57 | 33 | 43 | 13 | 3 |
P value = 0.236 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 42 | 54 | 56 |
NF1 MUTATED | 3 | 2 | 0 | 4 |
NF1 WILD-TYPE | 52 | 40 | 54 | 52 |
P value = 0.0128 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 25 | 34 | 46 | 61 | 19 | 22 |
NF1 MUTATED | 1 | 1 | 3 | 0 | 0 | 4 |
NF1 WILD-TYPE | 24 | 33 | 43 | 61 | 19 | 18 |
P value = 0.081 (Fisher's exact test), Q value = 0.47
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
NF1 MUTATED | 6 | 0 | 4 |
NF1 WILD-TYPE | 103 | 71 | 58 |
P value = 0.0219 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
NF1 MUTATED | 1 | 0 | 0 | 4 | 4 | 0 | 1 |
NF1 WILD-TYPE | 41 | 23 | 47 | 42 | 22 | 25 | 32 |
P value = 0.647 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
NF1 MUTATED | 4 | 3 | 3 |
NF1 WILD-TYPE | 98 | 46 | 89 |
P value = 0.739 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
NF1 MUTATED | 2 | 3 | 4 | 1 |
NF1 WILD-TYPE | 74 | 47 | 91 | 21 |
P value = 0.0467 (Fisher's exact test), Q value = 0.36
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 60 | 46 |
NF1 MUTATED | 1 | 2 | 5 |
NF1 WILD-TYPE | 78 | 58 | 41 |
P value = 0.00507 (Fisher's exact test), Q value = 0.083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 24 | 29 | 33 | 24 | 11 | 21 | 21 | 22 |
NF1 MUTATED | 0 | 0 | 0 | 4 | 0 | 0 | 3 | 1 |
NF1 WILD-TYPE | 24 | 29 | 33 | 20 | 11 | 21 | 18 | 21 |
P value = 0.844 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
FOXD2 MUTATED | 0 | 2 | 1 | 0 |
FOXD2 WILD-TYPE | 62 | 81 | 69 | 25 |
P value = 0.775 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
FOXD2 MUTATED | 0 | 0 | 1 | 1 | 1 | 0 | 0 |
FOXD2 WILD-TYPE | 45 | 46 | 56 | 34 | 44 | 13 | 3 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
FOXD2 MUTATED | 1 | 1 | 1 |
FOXD2 WILD-TYPE | 108 | 70 | 61 |
P value = 0.385 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
FOXD2 MUTATED | 0 | 0 | 0 | 1 | 1 | 1 | 0 |
FOXD2 WILD-TYPE | 42 | 23 | 47 | 45 | 25 | 24 | 33 |
P value = 0.798 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
FOXD2 MUTATED | 1 | 1 | 1 |
FOXD2 WILD-TYPE | 101 | 48 | 91 |
P value = 0.494 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
FOXD2 MUTATED | 1 | 0 | 1 | 1 |
FOXD2 WILD-TYPE | 75 | 50 | 94 | 21 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 60 | 46 |
FOXD2 MUTATED | 1 | 1 | 1 |
FOXD2 WILD-TYPE | 78 | 59 | 45 |
P value = 0.0992 (Fisher's exact test), Q value = 0.49
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 24 | 29 | 33 | 24 | 11 | 21 | 21 | 22 |
FOXD2 MUTATED | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 1 |
FOXD2 WILD-TYPE | 24 | 29 | 33 | 24 | 10 | 21 | 20 | 21 |
P value = 0.841 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
MMP17 MUTATED | 0 | 2 | 1 | 0 |
MMP17 WILD-TYPE | 62 | 81 | 69 | 25 |
P value = 0.163 (Fisher's exact test), Q value = 0.56
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
MMP17 MUTATED | 1 | 0 | 0 | 2 | 0 | 0 | 0 |
MMP17 WILD-TYPE | 44 | 46 | 57 | 33 | 45 | 13 | 3 |
P value = 0.242 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 42 | 54 | 56 |
MMP17 MUTATED | 2 | 1 | 0 | 0 |
MMP17 WILD-TYPE | 53 | 41 | 54 | 56 |
P value = 0.745 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 25 | 34 | 46 | 61 | 19 | 22 |
MMP17 MUTATED | 0 | 0 | 1 | 1 | 0 | 1 |
MMP17 WILD-TYPE | 25 | 34 | 45 | 60 | 19 | 21 |
P value = 0.252 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
MMP17 MUTATED | 1 | 0 | 2 |
MMP17 WILD-TYPE | 108 | 71 | 60 |
P value = 0.805 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
MMP17 MUTATED | 1 | 0 | 0 | 1 | 1 | 0 | 0 |
MMP17 WILD-TYPE | 41 | 23 | 47 | 45 | 25 | 25 | 33 |
P value = 0.23 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
MMP17 MUTATED | 3 | 0 | 0 |
MMP17 WILD-TYPE | 99 | 49 | 92 |
P value = 0.133 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
MMP17 MUTATED | 1 | 1 | 0 | 1 |
MMP17 WILD-TYPE | 75 | 49 | 95 | 21 |
P value = 0.0901 (Fisher's exact test), Q value = 0.49
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 83 | 70 | 25 |
ASTE1 MUTATED | 0 | 0 | 3 | 0 |
ASTE1 WILD-TYPE | 62 | 83 | 67 | 25 |
P value = 0.0785 (Fisher's exact test), Q value = 0.46
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 45 | 46 | 57 | 35 | 45 | 13 | 3 |
ASTE1 MUTATED | 3 | 0 | 0 | 0 | 0 | 0 | 0 |
ASTE1 WILD-TYPE | 42 | 46 | 57 | 35 | 45 | 13 | 3 |
P value = 0.344 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 109 | 71 | 62 |
ASTE1 MUTATED | 3 | 0 | 0 |
ASTE1 WILD-TYPE | 106 | 71 | 62 |
P value = 0.0453 (Fisher's exact test), Q value = 0.36
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 42 | 23 | 47 | 46 | 26 | 25 | 33 |
ASTE1 MUTATED | 3 | 0 | 0 | 0 | 0 | 0 | 0 |
ASTE1 WILD-TYPE | 39 | 23 | 47 | 46 | 26 | 25 | 33 |
P value = 0.233 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 49 | 92 |
ASTE1 MUTATED | 3 | 0 | 0 |
ASTE1 WILD-TYPE | 99 | 49 | 92 |
P value = 0.0972 (Fisher's exact test), Q value = 0.49
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 76 | 50 | 95 | 22 |
ASTE1 MUTATED | 3 | 0 | 0 | 0 |
ASTE1 WILD-TYPE | 73 | 50 | 95 | 22 |
P value = 0.183 (Fisher's exact test), Q value = 0.6
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 60 | 46 |
ASTE1 MUTATED | 3 | 0 | 0 |
ASTE1 WILD-TYPE | 76 | 60 | 46 |
P value = 0.334 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 24 | 29 | 33 | 24 | 11 | 21 | 21 | 22 |
ASTE1 MUTATED | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 0 |
ASTE1 WILD-TYPE | 24 | 27 | 33 | 24 | 11 | 20 | 21 | 22 |
-
Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline
-
Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/SARC-TP/19898602/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/SARC-TP/20140640/SARC-TP.transferedmergedcluster.txt
-
Number of patients = 244
-
Number of significantly mutated genes = 23
-
Number of Molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.