This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 82 arm-level events and 10 molecular subtypes across 366 patients, 179 significant findings detected with P value < 0.05 and Q value < 0.25.
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1q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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2p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3p gain cnv correlated to 'RPPA_CHIERARCHICAL'.
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3q gain cnv correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.
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4p gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
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4q gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
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5p gain cnv correlated to 'CN_CNMF'.
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5q gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7p gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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7q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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8p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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8q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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11p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12p gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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12q gain cnv correlated to 'CN_CNMF'.
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13q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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15q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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16q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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17p gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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17q gain cnv correlated to 'METHLYATION_CNMF'.
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18p gain cnv correlated to 'CN_CNMF'.
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18q gain cnv correlated to 'CN_CNMF'.
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19p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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19q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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20p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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20q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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21q gain cnv correlated to 'METHLYATION_CNMF'.
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22q gain cnv correlated to 'CN_CNMF'.
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xp gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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xq gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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1p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
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2p loss cnv correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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2q loss cnv correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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3p loss cnv correlated to 'MIRSEQ_CNMF'.
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3q loss cnv correlated to 'CN_CNMF'.
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4p loss cnv correlated to 'MIRSEQ_CHIERARCHICAL'.
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4q loss cnv correlated to 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5q loss cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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6p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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7p loss cnv correlated to 'RPPA_CNMF'.
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7q loss cnv correlated to 'METHLYATION_CNMF'.
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8p loss cnv correlated to 'MIRSEQ_CHIERARCHICAL'.
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8q loss cnv correlated to 'METHLYATION_CNMF'.
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9p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
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9q loss cnv correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.
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10p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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10q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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11p loss cnv correlated to 'CN_CNMF'.
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11q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12p loss cnv correlated to 'MRNASEQ_CNMF'.
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12q loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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13q loss cnv correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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14q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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16p loss cnv correlated to 'RPPA_CNMF'.
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16q loss cnv correlated to 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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17p loss cnv correlated to 'METHLYATION_CNMF'.
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17q loss cnv correlated to 'MIRSEQ_MATURE_CNMF'.
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18p loss cnv correlated to 'MRNASEQ_CNMF'.
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19p loss cnv correlated to 'RPPA_CHIERARCHICAL'.
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19q loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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20p loss cnv correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.
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20q loss cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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xp loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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xq loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
6p gain | 144 (39%) | 222 |
0.00038 (0.00911) |
8e-05 (0.00345) |
0.955 (0.983) |
0.144 (0.419) |
0.325 (0.635) |
0.0236 (0.141) |
0.0987 (0.34) |
0.00012 (0.00428) |
0.00095 (0.0169) |
0.0005 (0.01) |
11p gain | 35 (10%) | 331 |
0.00687 (0.0633) |
0.0945 (0.33) |
0.134 (0.402) |
0.186 (0.482) |
0.00122 (0.0196) |
0.00751 (0.0676) |
0.021 (0.131) |
0.00435 (0.0463) |
0.297 (0.604) |
0.0228 (0.14) |
11q gain | 29 (8%) | 337 |
0.00031 (0.00794) |
0.188 (0.482) |
0.145 (0.422) |
0.0868 (0.312) |
0.00282 (0.035) |
0.0012 (0.0196) |
0.00567 (0.0574) |
0.00015 (0.00492) |
0.0796 (0.293) |
0.0202 (0.129) |
xp loss | 97 (27%) | 269 |
0.0305 (0.175) |
1e-05 (0.000631) |
0.0446 (0.22) |
0.227 (0.52) |
0.00109 (0.0182) |
0.00389 (0.0437) |
0.00274 (0.0346) |
0.141 (0.415) |
0.0845 (0.307) |
0.854 (0.962) |
2p gain | 67 (18%) | 299 |
0.0111 (0.0856) |
0.258 (0.559) |
0.413 (0.694) |
0.817 (0.95) |
0.0042 (0.0463) |
0.00814 (0.0703) |
0.122 (0.39) |
0.00043 (0.00925) |
0.0546 (0.239) |
0.00155 (0.0235) |
2q gain | 65 (18%) | 301 |
0.00812 (0.0703) |
0.448 (0.716) |
0.638 (0.854) |
0.344 (0.647) |
0.00044 (0.00925) |
0.0121 (0.0894) |
0.102 (0.343) |
0.00017 (0.00516) |
0.0706 (0.278) |
0.0002 (0.00566) |
2p loss | 51 (14%) | 315 |
0.376 (0.662) |
0.211 (0.509) |
0.00958 (0.0802) |
0.0147 (0.102) |
0.928 (0.978) |
0.0343 (0.182) |
0.00531 (0.0553) |
0.0182 (0.12) |
0.185 (0.482) |
0.293 (0.602) |
xq loss | 93 (25%) | 273 |
0.0393 (0.2) |
1e-05 (0.000631) |
0.155 (0.443) |
0.0789 (0.293) |
0.00086 (0.0157) |
0.00648 (0.0608) |
0.033 (0.181) |
0.485 (0.75) |
0.0513 (0.233) |
0.628 (0.85) |
1q gain | 171 (47%) | 195 |
1e-05 (0.000631) |
0.665 (0.865) |
0.501 (0.752) |
0.508 (0.758) |
0.0331 (0.181) |
0.332 (0.637) |
0.023 (0.14) |
0.0535 (0.238) |
0.0407 (0.206) |
0.182 (0.478) |
13q gain | 94 (26%) | 272 |
1e-05 (0.000631) |
1e-05 (0.000631) |
0.39 (0.677) |
0.313 (0.621) |
0.00044 (0.00925) |
0.00622 (0.0608) |
0.373 (0.662) |
0.895 (0.976) |
0.125 (0.393) |
0.743 (0.906) |
15q gain | 85 (23%) | 281 |
2e-05 (0.00109) |
0.197 (0.492) |
0.975 (0.995) |
0.816 (0.95) |
0.00347 (0.0406) |
0.017 (0.113) |
0.131 (0.401) |
0.142 (0.418) |
0.278 (0.58) |
0.0445 (0.22) |
20p gain | 147 (40%) | 219 |
1e-05 (0.000631) |
0.00944 (0.0798) |
0.835 (0.956) |
0.984 (0.997) |
0.00015 (0.00492) |
0.0214 (0.133) |
0.702 (0.887) |
0.246 (0.544) |
0.289 (0.599) |
0.179 (0.478) |
xp gain | 41 (11%) | 325 |
0.0001 (0.0041) |
0.00194 (0.0274) |
0.903 (0.978) |
0.227 (0.52) |
0.00761 (0.0676) |
0.221 (0.517) |
0.218 (0.515) |
0.734 (0.905) |
0.0006 (0.0117) |
0.706 (0.891) |
xq gain | 43 (12%) | 323 |
0.00011 (0.0041) |
0.00022 (0.00582) |
0.329 (0.637) |
0.986 (0.997) |
0.00426 (0.0463) |
0.189 (0.483) |
0.224 (0.517) |
0.635 (0.854) |
0.00021 (0.00574) |
0.424 (0.699) |
1p loss | 53 (14%) | 313 |
0.0481 (0.226) |
0.00039 (0.00911) |
0.654 (0.864) |
0.314 (0.621) |
0.0106 (0.0844) |
0.132 (0.401) |
0.0495 (0.228) |
0.949 (0.981) |
0.127 (0.396) |
0.0887 (0.315) |
2q loss | 52 (14%) | 314 |
0.814 (0.95) |
0.194 (0.487) |
0.00305 (0.0367) |
0.00164 (0.0245) |
0.76 (0.917) |
0.213 (0.51) |
0.00641 (0.0608) |
0.0291 (0.169) |
0.124 (0.392) |
0.434 (0.71) |
6p loss | 68 (19%) | 298 |
0.00555 (0.0569) |
0.466 (0.73) |
0.925 (0.978) |
0.278 (0.58) |
0.0132 (0.0948) |
0.0354 (0.186) |
0.17 (0.464) |
0.0726 (0.28) |
0.074 (0.282) |
0.00645 (0.0608) |
10q loss | 224 (61%) | 142 |
1e-05 (0.000631) |
0.208 (0.502) |
0.926 (0.978) |
0.202 (0.495) |
0.00011 (0.0041) |
0.00227 (0.0305) |
0.0322 (0.181) |
0.214 (0.511) |
0.43 (0.705) |
0.63 (0.851) |
16q loss | 106 (29%) | 260 |
0.302 (0.611) |
0.324 (0.634) |
0.0273 (0.16) |
0.754 (0.913) |
0.0381 (0.197) |
0.0359 (0.186) |
0.242 (0.538) |
0.17 (0.464) |
0.0451 (0.222) |
0.118 (0.384) |
7q gain | 200 (55%) | 166 |
3e-05 (0.00145) |
0.91 (0.978) |
0.717 (0.894) |
0.517 (0.762) |
0.00653 (0.0608) |
0.189 (0.483) |
0.837 (0.956) |
0.374 (0.662) |
0.00292 (0.0357) |
0.294 (0.602) |
8p gain | 121 (33%) | 245 |
1e-05 (0.000631) |
0.174 (0.469) |
0.879 (0.967) |
0.842 (0.956) |
0.0126 (0.0926) |
0.0358 (0.186) |
0.606 (0.834) |
0.937 (0.978) |
0.955 (0.983) |
0.651 (0.862) |
8q gain | 169 (46%) | 197 |
1e-05 (0.000631) |
0.00105 (0.0179) |
0.698 (0.887) |
0.797 (0.939) |
0.00435 (0.0463) |
0.111 (0.362) |
0.818 (0.95) |
0.348 (0.65) |
0.934 (0.978) |
0.7 (0.887) |
16p gain | 58 (16%) | 308 |
0.00189 (0.0274) |
0.0341 (0.182) |
0.839 (0.956) |
0.66 (0.864) |
0.0004 (0.00911) |
0.125 (0.393) |
0.444 (0.713) |
0.106 (0.354) |
0.438 (0.712) |
0.411 (0.692) |
16q gain | 44 (12%) | 322 |
0.0002 (0.00566) |
0.0539 (0.238) |
0.223 (0.517) |
0.628 (0.85) |
3e-05 (0.00145) |
0.0326 (0.181) |
0.449 (0.716) |
0.125 (0.393) |
0.445 (0.713) |
0.235 (0.53) |
19p gain | 57 (16%) | 309 |
0.00533 (0.0553) |
0.0231 (0.14) |
0.589 (0.818) |
0.797 (0.939) |
0.00138 (0.0214) |
0.242 (0.538) |
0.92 (0.978) |
0.361 (0.65) |
0.2 (0.493) |
0.764 (0.919) |
19q gain | 56 (15%) | 310 |
0.0109 (0.0856) |
0.0186 (0.121) |
0.589 (0.818) |
1 (1.00) |
5e-05 (0.00228) |
0.0635 (0.26) |
0.693 (0.884) |
0.336 (0.637) |
0.273 (0.576) |
0.884 (0.971) |
20q gain | 179 (49%) | 187 |
1e-05 (0.000631) |
0.016 (0.109) |
0.888 (0.973) |
0.974 (0.995) |
0.00388 (0.0437) |
0.161 (0.455) |
0.723 (0.899) |
0.191 (0.486) |
0.904 (0.978) |
0.468 (0.731) |
4q loss | 85 (23%) | 281 |
0.527 (0.766) |
0.0714 (0.278) |
0.442 (0.713) |
0.751 (0.912) |
0.219 (0.515) |
0.0342 (0.182) |
0.943 (0.978) |
0.0027 (0.0346) |
0.535 (0.773) |
0.0143 (0.1) |
6q loss | 172 (47%) | 194 |
1e-05 (0.000631) |
0.0141 (0.0995) |
0.912 (0.978) |
0.481 (0.746) |
0.00244 (0.0318) |
0.0843 (0.307) |
0.435 (0.71) |
0.237 (0.532) |
0.416 (0.696) |
0.27 (0.572) |
9p loss | 236 (64%) | 130 |
0.00017 (0.00516) |
0.134 (0.402) |
0.356 (0.65) |
0.449 (0.716) |
0.00309 (0.0367) |
0.0995 (0.34) |
0.0303 (0.175) |
0.0692 (0.278) |
0.576 (0.807) |
0.687 (0.879) |
10p loss | 204 (56%) | 162 |
1e-05 (0.000631) |
0.127 (0.396) |
0.801 (0.941) |
0.409 (0.691) |
0.00136 (0.0214) |
0.0163 (0.11) |
0.2 (0.493) |
0.208 (0.502) |
0.501 (0.752) |
0.753 (0.913) |
11q loss | 148 (40%) | 218 |
0.0119 (0.0889) |
0.35 (0.65) |
0.866 (0.964) |
0.699 (0.887) |
0.223 (0.517) |
0.00211 (0.0291) |
0.358 (0.65) |
0.234 (0.53) |
0.106 (0.354) |
0.0444 (0.22) |
13q loss | 80 (22%) | 286 |
0.936 (0.978) |
0.011 (0.0856) |
0.0472 (0.224) |
0.558 (0.789) |
0.661 (0.864) |
0.033 (0.181) |
0.6 (0.831) |
0.335 (0.637) |
0.158 (0.447) |
0.634 (0.854) |
14q loss | 112 (31%) | 254 |
2e-05 (0.00109) |
0.32 (0.631) |
0.171 (0.464) |
0.27 (0.572) |
0.0091 (0.0777) |
0.0333 (0.181) |
0.358 (0.65) |
0.813 (0.95) |
0.408 (0.691) |
0.106 (0.354) |
3q gain | 72 (20%) | 294 |
0.561 (0.791) |
0.463 (0.728) |
0.0711 (0.278) |
0.0468 (0.224) |
0.0458 (0.223) |
0.239 (0.535) |
0.385 (0.675) |
0.574 (0.806) |
0.107 (0.354) |
0.796 (0.939) |
4p gain | 56 (15%) | 310 |
0.00193 (0.0274) |
0.192 (0.486) |
0.193 (0.487) |
0.859 (0.963) |
0.319 (0.631) |
0.246 (0.544) |
0.642 (0.855) |
0.00241 (0.0318) |
0.817 (0.95) |
0.541 (0.777) |
4q gain | 47 (13%) | 319 |
0.0117 (0.0883) |
0.324 (0.634) |
0.251 (0.55) |
0.934 (0.978) |
0.214 (0.511) |
0.39 (0.677) |
0.73 (0.901) |
0.0038 (0.0437) |
0.919 (0.978) |
0.866 (0.964) |
5q gain | 52 (14%) | 314 |
0.0104 (0.0837) |
0.141 (0.415) |
0.252 (0.55) |
0.139 (0.415) |
0.982 (0.996) |
0.777 (0.924) |
0.304 (0.614) |
0.626 (0.85) |
0.43 (0.705) |
0.0202 (0.129) |
7p gain | 203 (55%) | 163 |
1e-05 (0.000631) |
0.936 (0.978) |
0.494 (0.752) |
0.371 (0.662) |
0.0188 (0.122) |
0.199 (0.493) |
0.775 (0.923) |
0.711 (0.892) |
0.0773 (0.289) |
0.307 (0.616) |
12p gain | 65 (18%) | 301 |
0.00085 (0.0157) |
0.164 (0.456) |
0.638 (0.854) |
0.424 (0.699) |
0.0128 (0.0927) |
0.861 (0.963) |
0.622 (0.848) |
0.392 (0.678) |
0.237 (0.532) |
0.422 (0.699) |
17p gain | 37 (10%) | 329 |
0.00982 (0.0803) |
0.00099 (0.0173) |
0.742 (0.906) |
0.528 (0.766) |
0.0787 (0.293) |
0.515 (0.762) |
0.497 (0.752) |
0.401 (0.684) |
0.926 (0.978) |
0.312 (0.621) |
9q loss | 185 (51%) | 181 |
0.272 (0.574) |
0.0701 (0.278) |
0.989 (0.998) |
0.149 (0.433) |
0.0113 (0.0862) |
0.336 (0.637) |
0.0156 (0.107) |
0.0599 (0.249) |
0.68 (0.875) |
0.697 (0.887) |
12q loss | 67 (18%) | 299 |
0.0347 (0.183) |
0.00767 (0.0676) |
0.818 (0.95) |
0.875 (0.964) |
0.052 (0.233) |
0.556 (0.789) |
0.362 (0.65) |
0.409 (0.691) |
0.618 (0.846) |
0.874 (0.964) |
19q loss | 73 (20%) | 293 |
0.0243 (0.144) |
0.0471 (0.224) |
0.844 (0.956) |
0.083 (0.304) |
0.0913 (0.321) |
0.493 (0.752) |
0.27 (0.572) |
0.957 (0.983) |
0.0575 (0.245) |
0.64 (0.855) |
20p loss | 26 (7%) | 340 |
0.372 (0.662) |
0.62 (0.847) |
0.305 (0.614) |
0.772 (0.923) |
0.196 (0.492) |
0.0216 (0.133) |
0.0595 (0.249) |
0.0113 (0.0862) |
0.858 (0.963) |
0.377 (0.662) |
3p gain | 63 (17%) | 303 |
0.22 (0.515) |
0.248 (0.546) |
0.131 (0.401) |
0.0208 (0.131) |
0.417 (0.696) |
0.328 (0.637) |
0.666 (0.865) |
0.334 (0.637) |
0.523 (0.766) |
0.922 (0.978) |
5p gain | 76 (21%) | 290 |
0.00048 (0.00984) |
0.171 (0.464) |
0.719 (0.894) |
0.395 (0.681) |
0.224 (0.517) |
0.58 (0.81) |
0.109 (0.359) |
0.468 (0.731) |
1 (1.00) |
0.13 (0.401) |
12q gain | 39 (11%) | 327 |
0.0163 (0.11) |
1 (1.00) |
0.606 (0.834) |
0.0579 (0.245) |
0.542 (0.777) |
0.643 (0.855) |
0.872 (0.964) |
0.163 (0.456) |
0.424 (0.699) |
0.0564 (0.243) |
17q gain | 65 (18%) | 301 |
0.0512 (0.233) |
0.0484 (0.226) |
0.351 (0.65) |
0.276 (0.58) |
0.985 (0.997) |
0.334 (0.637) |
0.389 (0.677) |
0.442 (0.713) |
0.36 (0.65) |
0.649 (0.861) |
18p gain | 55 (15%) | 311 |
0.00213 (0.0291) |
0.606 (0.834) |
0.18 (0.478) |
0.391 (0.677) |
0.262 (0.565) |
0.659 (0.864) |
0.767 (0.92) |
0.827 (0.955) |
0.0701 (0.278) |
0.898 (0.978) |
18q gain | 44 (12%) | 322 |
0.00078 (0.0149) |
0.677 (0.874) |
0.294 (0.602) |
0.47 (0.731) |
0.217 (0.514) |
0.83 (0.955) |
0.497 (0.752) |
0.86 (0.963) |
0.66 (0.864) |
0.714 (0.894) |
21q gain | 67 (18%) | 299 |
0.165 (0.458) |
0.0485 (0.226) |
0.863 (0.963) |
0.528 (0.766) |
0.193 (0.487) |
0.357 (0.65) |
0.166 (0.458) |
0.799 (0.94) |
0.903 (0.978) |
0.759 (0.916) |
22q gain | 126 (34%) | 240 |
0.00035 (0.0087) |
0.119 (0.384) |
0.668 (0.866) |
0.944 (0.978) |
0.0731 (0.28) |
0.253 (0.551) |
0.486 (0.75) |
0.217 (0.514) |
0.83 (0.955) |
0.542 (0.777) |
3p loss | 61 (17%) | 305 |
0.0614 (0.253) |
0.821 (0.952) |
0.362 (0.65) |
0.327 (0.637) |
0.107 (0.354) |
0.155 (0.443) |
0.0388 (0.199) |
0.616 (0.845) |
0.451 (0.716) |
0.517 (0.762) |
3q loss | 53 (14%) | 313 |
0.0464 (0.224) |
0.0904 (0.319) |
0.409 (0.691) |
0.374 (0.662) |
0.375 (0.662) |
0.251 (0.55) |
0.0673 (0.272) |
0.264 (0.567) |
0.289 (0.599) |
0.868 (0.964) |
4p loss | 80 (22%) | 286 |
0.529 (0.766) |
0.199 (0.493) |
0.36 (0.65) |
0.97 (0.991) |
0.161 (0.455) |
0.0637 (0.26) |
0.736 (0.905) |
0.00604 (0.0604) |
0.916 (0.978) |
0.0878 (0.313) |
5q loss | 99 (27%) | 267 |
0.588 (0.818) |
0.0574 (0.245) |
0.443 (0.713) |
0.359 (0.65) |
0.861 (0.963) |
0.05 (0.229) |
0.951 (0.982) |
0.748 (0.91) |
0.828 (0.955) |
0.773 (0.923) |
7p loss | 18 (5%) | 348 |
0.829 (0.955) |
0.052 (0.233) |
0.0491 (0.228) |
0.557 (0.789) |
0.423 (0.699) |
0.843 (0.956) |
0.503 (0.752) |
0.769 (0.92) |
0.13 (0.401) |
0.785 (0.931) |
7q loss | 17 (5%) | 349 |
0.363 (0.651) |
0.00977 (0.0803) |
0.188 (0.482) |
0.44 (0.713) |
0.402 (0.686) |
0.42 (0.698) |
0.787 (0.932) |
0.833 (0.956) |
0.0701 (0.278) |
0.979 (0.996) |
8p loss | 67 (18%) | 299 |
0.122 (0.39) |
0.45 (0.716) |
0.0863 (0.312) |
0.294 (0.602) |
0.0576 (0.245) |
0.522 (0.765) |
0.248 (0.546) |
0.0468 (0.224) |
0.938 (0.978) |
0.182 (0.478) |
8q loss | 27 (7%) | 339 |
0.519 (0.763) |
0.00742 (0.0676) |
0.175 (0.471) |
0.535 (0.773) |
0.233 (0.53) |
0.74 (0.906) |
0.331 (0.637) |
0.668 (0.866) |
0.0715 (0.278) |
0.132 (0.401) |
11p loss | 126 (34%) | 240 |
0.0175 (0.116) |
0.0562 (0.243) |
0.344 (0.647) |
0.292 (0.602) |
0.469 (0.731) |
0.0991 (0.34) |
0.227 (0.52) |
0.123 (0.39) |
0.0949 (0.33) |
0.234 (0.53) |
12p loss | 59 (16%) | 307 |
0.219 (0.515) |
0.108 (0.356) |
0.708 (0.892) |
0.872 (0.964) |
0.0141 (0.0995) |
0.891 (0.974) |
0.335 (0.637) |
0.187 (0.482) |
0.895 (0.976) |
0.83 (0.955) |
16p loss | 68 (19%) | 298 |
0.205 (0.499) |
0.0946 (0.33) |
0.0441 (0.22) |
0.36 (0.65) |
0.0594 (0.249) |
0.155 (0.443) |
0.181 (0.478) |
0.165 (0.458) |
0.0871 (0.312) |
0.359 (0.65) |
17p loss | 127 (35%) | 239 |
0.0765 (0.289) |
0.00624 (0.0608) |
0.323 (0.634) |
0.515 (0.762) |
0.187 (0.482) |
0.0539 (0.238) |
0.767 (0.92) |
0.548 (0.78) |
0.716 (0.894) |
0.521 (0.765) |
17q loss | 64 (17%) | 302 |
0.143 (0.419) |
0.134 (0.402) |
0.18 (0.478) |
0.544 (0.777) |
0.924 (0.978) |
0.496 (0.752) |
0.868 (0.964) |
0.537 (0.774) |
0.032 (0.181) |
0.919 (0.978) |
18p loss | 104 (28%) | 262 |
0.73 (0.901) |
0.601 (0.831) |
0.576 (0.807) |
0.514 (0.762) |
0.0264 (0.156) |
0.167 (0.459) |
0.297 (0.604) |
0.0793 (0.293) |
0.455 (0.72) |
0.463 (0.728) |
19p loss | 77 (21%) | 289 |
0.073 (0.28) |
0.658 (0.864) |
0.557 (0.789) |
0.0331 (0.181) |
0.15 (0.433) |
0.254 (0.551) |
0.498 (0.752) |
0.932 (0.978) |
0.512 (0.762) |
0.525 (0.766) |
20q loss | 9 (2%) | 357 |
0.396 (0.681) |
0.179 (0.478) |
0.0742 (0.282) |
0.00989 (0.0803) |
0.737 (0.905) |
0.387 (0.677) |
0.268 (0.572) |
0.664 (0.865) |
||
1p gain | 87 (24%) | 279 |
0.132 (0.401) |
0.122 (0.39) |
0.843 (0.956) |
0.978 (0.996) |
0.873 (0.964) |
0.351 (0.65) |
0.171 (0.464) |
0.945 (0.978) |
0.758 (0.916) |
0.359 (0.65) |
6q gain | 48 (13%) | 318 |
0.31 (0.618) |
0.582 (0.812) |
0.924 (0.978) |
0.331 (0.637) |
0.942 (0.978) |
0.689 (0.88) |
0.678 (0.875) |
0.207 (0.501) |
0.934 (0.978) |
0.71 (0.892) |
9p gain | 16 (4%) | 350 |
0.305 (0.614) |
0.204 (0.499) |
0.232 (0.529) |
0.84 (0.956) |
0.342 (0.646) |
0.913 (0.978) |
0.891 (0.974) |
0.727 (0.901) |
0.1 (0.34) |
0.46 (0.727) |
9q gain | 21 (6%) | 345 |
0.663 (0.865) |
0.658 (0.864) |
0.14 (0.415) |
0.928 (0.978) |
0.561 (0.791) |
0.493 (0.752) |
0.736 (0.905) |
0.685 (0.879) |
0.503 (0.752) |
0.643 (0.855) |
10p gain | 12 (3%) | 354 |
0.496 (0.752) |
0.931 (0.978) |
0.935 (0.978) |
0.546 (0.779) |
0.712 (0.892) |
1 (1.00) |
0.199 (0.493) |
0.337 (0.639) |
0.928 (0.978) |
0.966 (0.99) |
10q gain | 3 (1%) | 363 |
0.376 (0.662) |
0.358 (0.65) |
0.636 (0.854) |
0.638 (0.854) |
0.796 (0.939) |
0.849 (0.958) |
0.275 (0.578) |
0.702 (0.887) |
||
14q gain | 41 (11%) | 325 |
0.396 (0.681) |
0.4 (0.684) |
0.499 (0.752) |
0.153 (0.442) |
0.834 (0.956) |
0.915 (0.978) |
0.659 (0.864) |
0.846 (0.957) |
0.767 (0.92) |
0.982 (0.996) |
1q loss | 28 (8%) | 338 |
0.0645 (0.262) |
0.0555 (0.242) |
0.97 (0.991) |
0.463 (0.728) |
0.117 (0.38) |
0.354 (0.65) |
0.501 (0.752) |
0.687 (0.879) |
0.279 (0.58) |
0.682 (0.877) |
5p loss | 79 (22%) | 287 |
0.852 (0.961) |
0.163 (0.456) |
0.941 (0.978) |
0.862 (0.963) |
0.839 (0.956) |
0.0771 (0.289) |
0.672 (0.869) |
0.301 (0.611) |
0.345 (0.647) |
0.525 (0.766) |
15q loss | 52 (14%) | 314 |
0.184 (0.482) |
0.355 (0.65) |
0.263 (0.567) |
0.0609 (0.252) |
0.802 (0.941) |
0.267 (0.571) |
0.717 (0.894) |
0.574 (0.806) |
0.607 (0.834) |
0.502 (0.752) |
18q loss | 100 (27%) | 266 |
0.448 (0.716) |
0.88 (0.967) |
0.205 (0.499) |
0.49 (0.752) |
0.445 (0.713) |
0.437 (0.712) |
0.621 (0.848) |
0.0985 (0.34) |
0.417 (0.696) |
0.488 (0.752) |
21q loss | 70 (19%) | 296 |
0.1 (0.34) |
0.474 (0.736) |
0.309 (0.617) |
0.931 (0.978) |
0.929 (0.978) |
0.497 (0.752) |
0.544 (0.777) |
0.741 (0.906) |
0.778 (0.924) |
0.399 (0.684) |
22q loss | 39 (11%) | 327 |
0.403 (0.686) |
0.417 (0.696) |
0.953 (0.983) |
0.94 (0.978) |
0.241 (0.538) |
0.963 (0.988) |
0.628 (0.85) |
0.746 (0.908) |
0.728 (0.901) |
0.9 (0.978) |
P value = 1e-05 (Fisher's exact test), Q value = 0.00063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
1Q GAIN MUTATED | 77 | 44 | 50 |
1Q GAIN WILD-TYPE | 24 | 95 | 76 |
P value = 0.0331 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
1Q GAIN MUTATED | 73 | 38 | 60 |
1Q GAIN WILD-TYPE | 64 | 66 | 65 |
P value = 0.023 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 73 | 94 | 118 | 21 | 44 |
1Q GAIN MUTATED | 30 | 39 | 61 | 5 | 27 |
1Q GAIN WILD-TYPE | 43 | 55 | 57 | 16 | 17 |
P value = 0.0407 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 94 | 108 | 134 |
1Q GAIN MUTATED | 39 | 44 | 74 |
1Q GAIN WILD-TYPE | 55 | 64 | 60 |
P value = 0.0111 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
2P GAIN MUTATED | 24 | 15 | 28 |
2P GAIN WILD-TYPE | 77 | 124 | 98 |
P value = 0.0042 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
2P GAIN MUTATED | 22 | 11 | 34 |
2P GAIN WILD-TYPE | 115 | 93 | 91 |
P value = 0.00814 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
2P GAIN MUTATED | 19 | 11 | 28 | 9 |
2P GAIN WILD-TYPE | 88 | 94 | 68 | 49 |
P value = 0.00043 (Fisher's exact test), Q value = 0.0093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 87 | 38 |
2P GAIN MUTATED | 18 | 28 | 8 | 11 |
2P GAIN WILD-TYPE | 114 | 65 | 79 | 27 |
P value = 0.00155 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 160 | 70 | 76 | 30 |
2P GAIN MUTATED | 22 | 8 | 24 | 9 |
2P GAIN WILD-TYPE | 138 | 62 | 52 | 21 |
P value = 0.00812 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
2Q GAIN MUTATED | 22 | 14 | 29 |
2Q GAIN WILD-TYPE | 79 | 125 | 97 |
P value = 0.00044 (Fisher's exact test), Q value = 0.0093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
2Q GAIN MUTATED | 17 | 12 | 36 |
2Q GAIN WILD-TYPE | 120 | 92 | 89 |
P value = 0.0121 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
2Q GAIN MUTATED | 15 | 13 | 28 | 9 |
2Q GAIN WILD-TYPE | 92 | 92 | 68 | 49 |
P value = 0.00017 (Fisher's exact test), Q value = 0.0052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 87 | 38 |
2Q GAIN MUTATED | 17 | 28 | 7 | 11 |
2Q GAIN WILD-TYPE | 115 | 65 | 80 | 27 |
P value = 2e-04 (Fisher's exact test), Q value = 0.0057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 160 | 70 | 76 | 30 |
2Q GAIN MUTATED | 19 | 8 | 25 | 9 |
2Q GAIN WILD-TYPE | 141 | 62 | 51 | 21 |
P value = 0.0208 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 58 | 35 | 49 |
3P GAIN MUTATED | 10 | 5 | 7 | 9 |
3P GAIN WILD-TYPE | 17 | 53 | 28 | 40 |
P value = 0.0468 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 58 | 35 | 49 |
3Q GAIN MUTATED | 11 | 8 | 10 | 11 |
3Q GAIN WILD-TYPE | 16 | 50 | 25 | 38 |
P value = 0.0458 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
3Q GAIN MUTATED | 18 | 24 | 30 |
3Q GAIN WILD-TYPE | 119 | 80 | 95 |
P value = 0.00193 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
4P GAIN MUTATED | 22 | 10 | 24 |
4P GAIN WILD-TYPE | 79 | 129 | 102 |
P value = 0.00241 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 87 | 38 |
4P GAIN MUTATED | 32 | 6 | 13 | 4 |
4P GAIN WILD-TYPE | 100 | 87 | 74 | 34 |
P value = 0.0117 (Fisher's exact test), Q value = 0.088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
4Q GAIN MUTATED | 16 | 9 | 22 |
4Q GAIN WILD-TYPE | 85 | 130 | 104 |
P value = 0.0038 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 87 | 38 |
4Q GAIN MUTATED | 29 | 6 | 8 | 4 |
4Q GAIN WILD-TYPE | 103 | 87 | 79 | 34 |
P value = 0.00048 (Fisher's exact test), Q value = 0.0098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
5P GAIN MUTATED | 21 | 16 | 39 |
5P GAIN WILD-TYPE | 80 | 123 | 87 |
P value = 0.0104 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
5Q GAIN MUTATED | 15 | 11 | 26 |
5Q GAIN WILD-TYPE | 86 | 128 | 100 |
P value = 0.0202 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 160 | 70 | 76 | 30 |
5Q GAIN MUTATED | 30 | 3 | 9 | 4 |
5Q GAIN WILD-TYPE | 130 | 67 | 67 | 26 |
P value = 0.00038 (Fisher's exact test), Q value = 0.0091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
6P GAIN MUTATED | 56 | 43 | 45 |
6P GAIN WILD-TYPE | 45 | 96 | 81 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
6P GAIN MUTATED | 52 | 40 | 52 |
6P GAIN WILD-TYPE | 77 | 104 | 41 |
P value = 0.0236 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
6P GAIN MUTATED | 49 | 47 | 26 | 22 |
6P GAIN WILD-TYPE | 58 | 58 | 70 | 36 |
P value = 0.00012 (Fisher's exact test), Q value = 0.0043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 87 | 38 |
6P GAIN MUTATED | 69 | 21 | 36 | 14 |
6P GAIN WILD-TYPE | 63 | 72 | 51 | 24 |
P value = 0.00095 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 94 | 108 | 134 |
6P GAIN MUTATED | 29 | 35 | 70 |
6P GAIN WILD-TYPE | 65 | 73 | 64 |
P value = 5e-04 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 160 | 70 | 76 | 30 |
6P GAIN MUTATED | 79 | 28 | 16 | 11 |
6P GAIN WILD-TYPE | 81 | 42 | 60 | 19 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
7P GAIN MUTATED | 57 | 56 | 90 |
7P GAIN WILD-TYPE | 44 | 83 | 36 |
P value = 0.0188 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
7P GAIN MUTATED | 65 | 57 | 81 |
7P GAIN WILD-TYPE | 72 | 47 | 44 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
7Q GAIN MUTATED | 54 | 58 | 88 |
7Q GAIN WILD-TYPE | 47 | 81 | 38 |
P value = 0.00653 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
7Q GAIN MUTATED | 62 | 57 | 81 |
7Q GAIN WILD-TYPE | 75 | 47 | 44 |
P value = 0.00292 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 94 | 108 | 134 |
7Q GAIN MUTATED | 59 | 65 | 57 |
7Q GAIN WILD-TYPE | 35 | 43 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
8P GAIN MUTATED | 25 | 28 | 68 |
8P GAIN WILD-TYPE | 76 | 111 | 58 |
P value = 0.0126 (Fisher's exact test), Q value = 0.093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
8P GAIN MUTATED | 39 | 28 | 54 |
8P GAIN WILD-TYPE | 98 | 76 | 71 |
P value = 0.0358 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
8P GAIN MUTATED | 40 | 32 | 38 | 11 |
8P GAIN WILD-TYPE | 67 | 73 | 58 | 47 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
8Q GAIN MUTATED | 41 | 42 | 86 |
8Q GAIN WILD-TYPE | 60 | 97 | 40 |
P value = 0.00105 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
8Q GAIN MUTATED | 47 | 65 | 57 |
8Q GAIN WILD-TYPE | 82 | 79 | 36 |
P value = 0.00435 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
8Q GAIN MUTATED | 59 | 38 | 72 |
8Q GAIN WILD-TYPE | 78 | 66 | 53 |
P value = 0.00687 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
11P GAIN MUTATED | 6 | 8 | 21 |
11P GAIN WILD-TYPE | 95 | 131 | 105 |
P value = 0.00122 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
11P GAIN MUTATED | 8 | 5 | 22 |
11P GAIN WILD-TYPE | 129 | 99 | 103 |
P value = 0.00751 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
11P GAIN MUTATED | 8 | 9 | 17 | 1 |
11P GAIN WILD-TYPE | 99 | 96 | 79 | 57 |
P value = 0.021 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 73 | 94 | 118 | 21 | 44 |
11P GAIN MUTATED | 6 | 15 | 5 | 4 | 3 |
11P GAIN WILD-TYPE | 67 | 79 | 113 | 17 | 41 |
P value = 0.00435 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 87 | 38 |
11P GAIN MUTATED | 16 | 14 | 2 | 1 |
11P GAIN WILD-TYPE | 116 | 79 | 85 | 37 |
P value = 0.0228 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 160 | 70 | 76 | 30 |
11P GAIN MUTATED | 10 | 6 | 14 | 1 |
11P GAIN WILD-TYPE | 150 | 64 | 62 | 29 |
P value = 0.00031 (Fisher's exact test), Q value = 0.0079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
11Q GAIN MUTATED | 2 | 7 | 20 |
11Q GAIN WILD-TYPE | 99 | 132 | 106 |
P value = 0.00282 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
11Q GAIN MUTATED | 4 | 7 | 18 |
11Q GAIN WILD-TYPE | 133 | 97 | 107 |
P value = 0.0012 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
11Q GAIN MUTATED | 4 | 11 | 14 | 0 |
11Q GAIN WILD-TYPE | 103 | 94 | 82 | 58 |
P value = 0.00567 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 73 | 94 | 118 | 21 | 44 |
11Q GAIN MUTATED | 6 | 12 | 3 | 4 | 1 |
11Q GAIN WILD-TYPE | 67 | 82 | 115 | 17 | 43 |
P value = 0.00015 (Fisher's exact test), Q value = 0.0049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 87 | 38 |
11Q GAIN MUTATED | 14 | 12 | 0 | 0 |
11Q GAIN WILD-TYPE | 118 | 81 | 87 | 38 |
P value = 0.0202 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 160 | 70 | 76 | 30 |
11Q GAIN MUTATED | 7 | 5 | 11 | 0 |
11Q GAIN WILD-TYPE | 153 | 65 | 65 | 30 |
P value = 0.00085 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
12P GAIN MUTATED | 18 | 13 | 34 |
12P GAIN WILD-TYPE | 83 | 126 | 92 |
P value = 0.0128 (Fisher's exact test), Q value = 0.093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
12P GAIN MUTATED | 30 | 9 | 26 |
12P GAIN WILD-TYPE | 107 | 95 | 99 |
P value = 0.0163 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
12Q GAIN MUTATED | 10 | 8 | 21 |
12Q GAIN WILD-TYPE | 91 | 131 | 105 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
13Q GAIN MUTATED | 31 | 17 | 46 |
13Q GAIN WILD-TYPE | 70 | 122 | 80 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
13Q GAIN MUTATED | 32 | 22 | 40 |
13Q GAIN WILD-TYPE | 97 | 122 | 53 |
P value = 0.00044 (Fisher's exact test), Q value = 0.0093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
13Q GAIN MUTATED | 26 | 20 | 48 |
13Q GAIN WILD-TYPE | 111 | 84 | 77 |
P value = 0.00622 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
13Q GAIN MUTATED | 30 | 29 | 30 | 5 |
13Q GAIN WILD-TYPE | 77 | 76 | 66 | 53 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
15Q GAIN MUTATED | 15 | 23 | 47 |
15Q GAIN WILD-TYPE | 86 | 116 | 79 |
P value = 0.00347 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
15Q GAIN MUTATED | 20 | 25 | 40 |
15Q GAIN WILD-TYPE | 117 | 79 | 85 |
P value = 0.017 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
15Q GAIN MUTATED | 16 | 26 | 32 | 11 |
15Q GAIN WILD-TYPE | 91 | 79 | 64 | 47 |
P value = 0.0445 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 160 | 70 | 76 | 30 |
15Q GAIN MUTATED | 29 | 13 | 26 | 7 |
15Q GAIN WILD-TYPE | 131 | 57 | 50 | 23 |
P value = 0.00189 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
16P GAIN MUTATED | 15 | 12 | 31 |
16P GAIN WILD-TYPE | 86 | 127 | 95 |
P value = 0.0341 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
16P GAIN MUTATED | 17 | 18 | 23 |
16P GAIN WILD-TYPE | 112 | 126 | 70 |
P value = 4e-04 (Fisher's exact test), Q value = 0.0091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
16P GAIN MUTATED | 12 | 13 | 33 |
16P GAIN WILD-TYPE | 125 | 91 | 92 |
P value = 2e-04 (Fisher's exact test), Q value = 0.0057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
16Q GAIN MUTATED | 12 | 6 | 26 |
16Q GAIN WILD-TYPE | 89 | 133 | 100 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
16Q GAIN MUTATED | 7 | 7 | 30 |
16Q GAIN WILD-TYPE | 130 | 97 | 95 |
P value = 0.0326 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
16Q GAIN MUTATED | 10 | 10 | 20 | 4 |
16Q GAIN WILD-TYPE | 97 | 95 | 76 | 54 |
P value = 0.00982 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
17P GAIN MUTATED | 13 | 6 | 18 |
17P GAIN WILD-TYPE | 88 | 133 | 108 |
P value = 0.00099 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
17P GAIN MUTATED | 10 | 8 | 19 |
17P GAIN WILD-TYPE | 119 | 136 | 74 |
P value = 0.0484 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
17Q GAIN MUTATED | 22 | 19 | 24 |
17Q GAIN WILD-TYPE | 107 | 125 | 69 |
P value = 0.00213 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
18P GAIN MUTATED | 18 | 10 | 27 |
18P GAIN WILD-TYPE | 83 | 129 | 99 |
P value = 0.00078 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
18Q GAIN MUTATED | 17 | 6 | 21 |
18Q GAIN WILD-TYPE | 84 | 133 | 105 |
P value = 0.00533 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
19P GAIN MUTATED | 16 | 12 | 29 |
19P GAIN WILD-TYPE | 85 | 127 | 97 |
P value = 0.0231 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
19P GAIN MUTATED | 17 | 17 | 23 |
19P GAIN WILD-TYPE | 112 | 127 | 70 |
P value = 0.00138 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
19P GAIN MUTATED | 20 | 7 | 30 |
19P GAIN WILD-TYPE | 117 | 97 | 95 |
P value = 0.0109 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
19Q GAIN MUTATED | 17 | 12 | 27 |
19Q GAIN WILD-TYPE | 84 | 127 | 99 |
P value = 0.0186 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
19Q GAIN MUTATED | 15 | 18 | 23 |
19Q GAIN WILD-TYPE | 114 | 126 | 70 |
P value = 5e-05 (Fisher's exact test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
19Q GAIN MUTATED | 18 | 6 | 32 |
19Q GAIN WILD-TYPE | 119 | 98 | 93 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
20P GAIN MUTATED | 48 | 29 | 70 |
20P GAIN WILD-TYPE | 53 | 110 | 56 |
P value = 0.00944 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
20P GAIN MUTATED | 47 | 50 | 50 |
20P GAIN WILD-TYPE | 82 | 94 | 43 |
P value = 0.00015 (Fisher's exact test), Q value = 0.0049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
20P GAIN MUTATED | 44 | 34 | 69 |
20P GAIN WILD-TYPE | 93 | 70 | 56 |
P value = 0.0214 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
20P GAIN MUTATED | 38 | 40 | 51 | 18 |
20P GAIN WILD-TYPE | 69 | 65 | 45 | 40 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
20Q GAIN MUTATED | 64 | 37 | 78 |
20Q GAIN WILD-TYPE | 37 | 102 | 48 |
P value = 0.016 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
20Q GAIN MUTATED | 61 | 61 | 57 |
20Q GAIN WILD-TYPE | 68 | 83 | 36 |
P value = 0.00388 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
20Q GAIN MUTATED | 61 | 42 | 76 |
20Q GAIN WILD-TYPE | 76 | 62 | 49 |
P value = 0.0485 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
21Q GAIN MUTATED | 24 | 19 | 24 |
21Q GAIN WILD-TYPE | 105 | 125 | 69 |
P value = 0.00035 (Fisher's exact test), Q value = 0.0087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
22Q GAIN MUTATED | 46 | 31 | 49 |
22Q GAIN WILD-TYPE | 55 | 108 | 77 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
XP GAIN MUTATED | 21 | 5 | 15 |
XP GAIN WILD-TYPE | 80 | 134 | 111 |
P value = 0.00194 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
XP GAIN MUTATED | 16 | 7 | 18 |
XP GAIN WILD-TYPE | 113 | 137 | 75 |
P value = 0.00761 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
XP GAIN MUTATED | 14 | 5 | 22 |
XP GAIN WILD-TYPE | 123 | 99 | 103 |
P value = 6e-04 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 94 | 108 | 134 |
XP GAIN MUTATED | 2 | 13 | 23 |
XP GAIN WILD-TYPE | 92 | 95 | 111 |
P value = 0.00011 (Fisher's exact test), Q value = 0.0041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
XQ GAIN MUTATED | 22 | 5 | 16 |
XQ GAIN WILD-TYPE | 79 | 134 | 110 |
P value = 0.00022 (Fisher's exact test), Q value = 0.0058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
XQ GAIN MUTATED | 18 | 6 | 19 |
XQ GAIN WILD-TYPE | 111 | 138 | 74 |
P value = 0.00426 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
XQ GAIN MUTATED | 18 | 4 | 21 |
XQ GAIN WILD-TYPE | 119 | 100 | 104 |
P value = 0.00021 (Fisher's exact test), Q value = 0.0057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 94 | 108 | 134 |
XQ GAIN MUTATED | 1 | 14 | 22 |
XQ GAIN WILD-TYPE | 93 | 94 | 112 |
P value = 0.0481 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
1P LOSS MUTATED | 15 | 13 | 25 |
1P LOSS WILD-TYPE | 86 | 126 | 101 |
P value = 0.00039 (Fisher's exact test), Q value = 0.0091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
1P LOSS MUTATED | 13 | 14 | 26 |
1P LOSS WILD-TYPE | 116 | 130 | 67 |
P value = 0.0106 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
1P LOSS MUTATED | 18 | 8 | 27 |
1P LOSS WILD-TYPE | 119 | 96 | 98 |
P value = 0.0495 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 73 | 94 | 118 | 21 | 44 |
1P LOSS MUTATED | 4 | 20 | 17 | 4 | 7 |
1P LOSS WILD-TYPE | 69 | 74 | 101 | 17 | 37 |
P value = 0.00958 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 50 | 51 | 42 | 26 |
2P LOSS MUTATED | 4 | 15 | 3 | 3 |
2P LOSS WILD-TYPE | 46 | 36 | 39 | 23 |
P value = 0.0147 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 58 | 35 | 49 |
2P LOSS MUTATED | 1 | 7 | 3 | 14 |
2P LOSS WILD-TYPE | 26 | 51 | 32 | 35 |
P value = 0.0343 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
2P LOSS MUTATED | 16 | 21 | 6 | 8 |
2P LOSS WILD-TYPE | 91 | 84 | 90 | 50 |
P value = 0.00531 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 73 | 94 | 118 | 21 | 44 |
2P LOSS MUTATED | 7 | 7 | 28 | 1 | 7 |
2P LOSS WILD-TYPE | 66 | 87 | 90 | 20 | 37 |
P value = 0.0182 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 87 | 38 |
2P LOSS MUTATED | 23 | 5 | 17 | 5 |
2P LOSS WILD-TYPE | 109 | 88 | 70 | 33 |
P value = 0.00305 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 50 | 51 | 42 | 26 |
2Q LOSS MUTATED | 4 | 15 | 2 | 5 |
2Q LOSS WILD-TYPE | 46 | 36 | 40 | 21 |
P value = 0.00164 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 58 | 35 | 49 |
2Q LOSS MUTATED | 1 | 6 | 3 | 16 |
2Q LOSS WILD-TYPE | 26 | 52 | 32 | 33 |
P value = 0.00641 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 73 | 94 | 118 | 21 | 44 |
2Q LOSS MUTATED | 7 | 8 | 29 | 1 | 7 |
2Q LOSS WILD-TYPE | 66 | 86 | 89 | 20 | 37 |
P value = 0.0291 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 87 | 38 |
2Q LOSS MUTATED | 23 | 6 | 18 | 5 |
2Q LOSS WILD-TYPE | 109 | 87 | 69 | 33 |
P value = 0.0388 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 73 | 94 | 118 | 21 | 44 |
3P LOSS MUTATED | 8 | 23 | 23 | 2 | 3 |
3P LOSS WILD-TYPE | 65 | 71 | 95 | 19 | 41 |
P value = 0.0464 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
3Q LOSS MUTATED | 13 | 14 | 26 |
3Q LOSS WILD-TYPE | 88 | 125 | 100 |
P value = 0.00604 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 87 | 38 |
4P LOSS MUTATED | 16 | 28 | 22 | 9 |
4P LOSS WILD-TYPE | 116 | 65 | 65 | 29 |
P value = 0.0342 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
4Q LOSS MUTATED | 21 | 19 | 33 | 12 |
4Q LOSS WILD-TYPE | 86 | 86 | 63 | 46 |
P value = 0.0027 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 87 | 38 |
4Q LOSS MUTATED | 17 | 30 | 22 | 11 |
4Q LOSS WILD-TYPE | 115 | 63 | 65 | 27 |
P value = 0.0143 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 160 | 70 | 76 | 30 |
4Q LOSS MUTATED | 32 | 11 | 28 | 7 |
4Q LOSS WILD-TYPE | 128 | 59 | 48 | 23 |
P value = 0.05 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
5Q LOSS MUTATED | 34 | 18 | 29 | 18 |
5Q LOSS WILD-TYPE | 73 | 87 | 67 | 40 |
P value = 0.00555 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
6P LOSS MUTATED | 15 | 18 | 35 |
6P LOSS WILD-TYPE | 86 | 121 | 91 |
P value = 0.0132 (Fisher's exact test), Q value = 0.095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
6P LOSS MUTATED | 25 | 11 | 32 |
6P LOSS WILD-TYPE | 112 | 93 | 93 |
P value = 0.0354 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
6P LOSS MUTATED | 23 | 14 | 25 | 6 |
6P LOSS WILD-TYPE | 84 | 91 | 71 | 52 |
P value = 0.00645 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 160 | 70 | 76 | 30 |
6P LOSS MUTATED | 19 | 11 | 23 | 7 |
6P LOSS WILD-TYPE | 141 | 59 | 53 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
6Q LOSS MUTATED | 61 | 38 | 73 |
6Q LOSS WILD-TYPE | 40 | 101 | 53 |
P value = 0.0141 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
6Q LOSS MUTATED | 72 | 55 | 45 |
6Q LOSS WILD-TYPE | 57 | 89 | 48 |
P value = 0.00244 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
6Q LOSS MUTATED | 72 | 34 | 66 |
6Q LOSS WILD-TYPE | 65 | 70 | 59 |
P value = 0.0491 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 50 | 51 | 42 | 26 |
7P LOSS MUTATED | 0 | 6 | 2 | 2 |
7P LOSS WILD-TYPE | 50 | 45 | 40 | 24 |
P value = 0.00977 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
7Q LOSS MUTATED | 3 | 4 | 10 |
7Q LOSS WILD-TYPE | 126 | 140 | 83 |
P value = 0.0468 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 87 | 38 |
8P LOSS MUTATED | 26 | 12 | 24 | 4 |
8P LOSS WILD-TYPE | 106 | 81 | 63 | 34 |
P value = 0.00742 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
8Q LOSS MUTATED | 16 | 4 | 7 |
8Q LOSS WILD-TYPE | 113 | 140 | 86 |
P value = 0.00017 (Fisher's exact test), Q value = 0.0052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
9P LOSS MUTATED | 60 | 77 | 99 |
9P LOSS WILD-TYPE | 41 | 62 | 27 |
P value = 0.00309 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
9P LOSS MUTATED | 86 | 56 | 94 |
9P LOSS WILD-TYPE | 51 | 48 | 31 |
P value = 0.0303 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 73 | 94 | 118 | 21 | 44 |
9P LOSS MUTATED | 37 | 62 | 79 | 18 | 27 |
9P LOSS WILD-TYPE | 36 | 32 | 39 | 3 | 17 |
P value = 0.0113 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
9Q LOSS MUTATED | 57 | 53 | 75 |
9Q LOSS WILD-TYPE | 80 | 51 | 50 |
P value = 0.0156 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 73 | 94 | 118 | 21 | 44 |
9Q LOSS MUTATED | 25 | 50 | 62 | 15 | 24 |
9Q LOSS WILD-TYPE | 48 | 44 | 56 | 6 | 20 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
10P LOSS MUTATED | 55 | 51 | 98 |
10P LOSS WILD-TYPE | 46 | 88 | 28 |
P value = 0.00136 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
10P LOSS MUTATED | 69 | 49 | 86 |
10P LOSS WILD-TYPE | 68 | 55 | 39 |
P value = 0.0163 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
10P LOSS MUTATED | 59 | 52 | 66 | 27 |
10P LOSS WILD-TYPE | 48 | 53 | 30 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
10Q LOSS MUTATED | 51 | 63 | 110 |
10Q LOSS WILD-TYPE | 50 | 76 | 16 |
P value = 0.00011 (Fisher's exact test), Q value = 0.0041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
10Q LOSS MUTATED | 74 | 55 | 95 |
10Q LOSS WILD-TYPE | 63 | 49 | 30 |
P value = 0.00227 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
10Q LOSS MUTATED | 60 | 58 | 74 | 32 |
10Q LOSS WILD-TYPE | 47 | 47 | 22 | 26 |
P value = 0.0322 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 73 | 94 | 118 | 21 | 44 |
10Q LOSS MUTATED | 35 | 62 | 76 | 17 | 25 |
10Q LOSS WILD-TYPE | 38 | 32 | 42 | 4 | 19 |
P value = 0.0175 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
11P LOSS MUTATED | 43 | 36 | 47 |
11P LOSS WILD-TYPE | 58 | 103 | 79 |
P value = 0.0119 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
11Q LOSS MUTATED | 52 | 45 | 51 |
11Q LOSS WILD-TYPE | 49 | 94 | 75 |
P value = 0.00211 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
11Q LOSS MUTATED | 47 | 34 | 32 | 35 |
11Q LOSS WILD-TYPE | 60 | 71 | 64 | 23 |
P value = 0.0444 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 160 | 70 | 76 | 30 |
11Q LOSS MUTATED | 68 | 35 | 22 | 15 |
11Q LOSS WILD-TYPE | 92 | 35 | 54 | 15 |
P value = 0.0141 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
12P LOSS MUTATED | 13 | 18 | 28 |
12P LOSS WILD-TYPE | 124 | 86 | 97 |
P value = 0.0347 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
12Q LOSS MUTATED | 19 | 17 | 31 |
12Q LOSS WILD-TYPE | 82 | 122 | 95 |
P value = 0.00767 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
12Q LOSS MUTATED | 33 | 16 | 18 |
12Q LOSS WILD-TYPE | 96 | 128 | 75 |
P value = 0.011 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
13Q LOSS MUTATED | 26 | 42 | 12 |
13Q LOSS WILD-TYPE | 103 | 102 | 81 |
P value = 0.0472 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 50 | 51 | 42 | 26 |
13Q LOSS MUTATED | 14 | 5 | 13 | 6 |
13Q LOSS WILD-TYPE | 36 | 46 | 29 | 20 |
P value = 0.033 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
13Q LOSS MUTATED | 19 | 17 | 24 | 20 |
13Q LOSS WILD-TYPE | 88 | 88 | 72 | 38 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
14Q LOSS MUTATED | 26 | 27 | 59 |
14Q LOSS WILD-TYPE | 75 | 112 | 67 |
P value = 0.0091 (Fisher's exact test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
14Q LOSS MUTATED | 30 | 33 | 49 |
14Q LOSS WILD-TYPE | 107 | 71 | 76 |
P value = 0.0333 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
14Q LOSS MUTATED | 32 | 32 | 38 | 10 |
14Q LOSS WILD-TYPE | 75 | 73 | 58 | 48 |
P value = 0.0441 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 50 | 51 | 42 | 26 |
16P LOSS MUTATED | 8 | 14 | 11 | 1 |
16P LOSS WILD-TYPE | 42 | 37 | 31 | 25 |
P value = 0.0273 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 50 | 51 | 42 | 26 |
16Q LOSS MUTATED | 11 | 21 | 17 | 4 |
16Q LOSS WILD-TYPE | 39 | 30 | 25 | 22 |
P value = 0.0381 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
16Q LOSS MUTATED | 50 | 28 | 28 |
16Q LOSS WILD-TYPE | 87 | 76 | 97 |
P value = 0.0359 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
16Q LOSS MUTATED | 36 | 30 | 18 | 22 |
16Q LOSS WILD-TYPE | 71 | 75 | 78 | 36 |
P value = 0.0451 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 94 | 108 | 134 |
16Q LOSS MUTATED | 35 | 23 | 40 |
16Q LOSS WILD-TYPE | 59 | 85 | 94 |
P value = 0.00624 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
17P LOSS MUTATED | 53 | 54 | 20 |
17P LOSS WILD-TYPE | 76 | 90 | 73 |
P value = 0.032 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 94 | 108 | 134 |
17Q LOSS MUTATED | 24 | 17 | 16 |
17Q LOSS WILD-TYPE | 70 | 91 | 118 |
P value = 0.0264 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
18P LOSS MUTATED | 30 | 28 | 46 |
18P LOSS WILD-TYPE | 107 | 76 | 79 |
P value = 0.0331 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 58 | 35 | 49 |
19P LOSS MUTATED | 4 | 9 | 4 | 17 |
19P LOSS WILD-TYPE | 23 | 49 | 31 | 32 |
P value = 0.0243 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
19Q LOSS MUTATED | 29 | 20 | 24 |
19Q LOSS WILD-TYPE | 72 | 119 | 102 |
P value = 0.0471 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
19Q LOSS MUTATED | 33 | 20 | 20 |
19Q LOSS WILD-TYPE | 96 | 124 | 73 |
P value = 0.0216 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
20P LOSS MUTATED | 14 | 7 | 2 | 3 |
20P LOSS WILD-TYPE | 93 | 98 | 94 | 55 |
P value = 0.0113 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 87 | 38 |
20P LOSS MUTATED | 5 | 6 | 12 | 0 |
20P LOSS WILD-TYPE | 127 | 87 | 75 | 38 |
P value = 0.00989 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
20Q LOSS MUTATED | 7 | 2 | 0 | 0 |
20Q LOSS WILD-TYPE | 100 | 103 | 96 | 58 |
P value = 0.0305 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
XP LOSS MUTATED | 24 | 29 | 44 |
XP LOSS WILD-TYPE | 77 | 110 | 82 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
XP LOSS MUTATED | 50 | 18 | 29 |
XP LOSS WILD-TYPE | 79 | 126 | 64 |
P value = 0.0446 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 50 | 51 | 42 | 26 |
XP LOSS MUTATED | 6 | 16 | 13 | 9 |
XP LOSS WILD-TYPE | 44 | 35 | 29 | 17 |
P value = 0.00109 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
XP LOSS MUTATED | 44 | 14 | 39 |
XP LOSS WILD-TYPE | 93 | 90 | 86 |
P value = 0.00389 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
XP LOSS MUTATED | 38 | 16 | 30 | 13 |
XP LOSS WILD-TYPE | 69 | 89 | 66 | 45 |
P value = 0.00274 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 73 | 94 | 118 | 21 | 44 |
XP LOSS MUTATED | 13 | 20 | 41 | 11 | 8 |
XP LOSS WILD-TYPE | 60 | 74 | 77 | 10 | 36 |
P value = 0.0393 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 139 | 126 |
XQ LOSS MUTATED | 23 | 28 | 42 |
XQ LOSS WILD-TYPE | 78 | 111 | 84 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 144 | 93 |
XQ LOSS MUTATED | 48 | 18 | 27 |
XQ LOSS WILD-TYPE | 81 | 126 | 66 |
P value = 0.00086 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 137 | 104 | 125 |
XQ LOSS MUTATED | 40 | 13 | 40 |
XQ LOSS WILD-TYPE | 97 | 91 | 85 |
P value = 0.00648 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 107 | 105 | 96 | 58 |
XQ LOSS MUTATED | 34 | 15 | 31 | 13 |
XQ LOSS WILD-TYPE | 73 | 90 | 65 | 45 |
P value = 0.033 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 73 | 94 | 118 | 21 | 44 |
XQ LOSS MUTATED | 17 | 18 | 37 | 10 | 8 |
XQ LOSS WILD-TYPE | 56 | 76 | 81 | 11 | 36 |
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/SKCM-TM/19784515/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/SKCM-TM/20140641/SKCM-TM.transferedmergedcluster.txt
-
Number of patients = 366
-
Number of significantly arm-level cnvs = 82
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.