Correlation between gene mutation status and molecular subtypes
Skin Cutaneous Melanoma (Metastatic)
21 August 2015  |  analyses__2015_08_21
Maintainer Information
Citation Information
doi:10.7908/C1XD10ZH
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2015): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C1XD10ZH
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 117 genes and 10 molecular subtypes across 290 patients, 6 significant findings detected with P value < 0.05 and Q value < 0.25.

  • NRAS mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • BRAF mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PRKAA2 mutation correlated to 'METHLYATION_CNMF'.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 117 genes and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 6 significant findings detected.

Clinical
Features 		CN
CNMF 		METHLYATION
CNMF 		RPPA
CNMF 		RPPA
CHIERARCHICAL 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
BRAF 145 (50%) 145 1e-05
(0.0117) 		0.0146
(0.604) 		0.487
(1.00) 		0.504
(1.00) 		0.00535
(0.391) 		7e-05
(0.0312) 		0.0044
(0.381) 		0.198
(0.917) 		8e-05
(0.0312) 		0.0702
(0.844)
NRAS 87 (30%) 203 0.00021
(0.0468) 		0.0162
(0.604) 		0.757
(1.00) 		0.264
(0.945) 		0.732
(1.00) 		0.648
(1.00) 		0.993
(1.00) 		0.377
(1.00) 		0.00011
(0.0322) 		0.202
(0.917)
PRKAA2 25 (9%) 265 0.0292
(0.748) 		0.00024
(0.0468) 		0.539
(1.00) 		0.151
(0.869) 		0.0441
(0.748) 		0.0318
(0.748) 		0.616
(1.00) 		0.802
(1.00) 		0.568
(1.00) 		0.721
(1.00)
TP53 48 (17%) 242 0.673
(1.00) 		0.00604
(0.416) 		0.216
(0.923) 		0.304
(0.964) 		0.148
(0.869) 		0.651
(1.00) 		0.209
(0.918) 		0.614
(1.00) 		0.339
(1.00) 		0.669
(1.00)
CDKN2A 41 (14%) 249 0.0519
(0.789) 		0.135
(0.863) 		0.142
(0.869) 		0.945
(1.00) 		0.977
(1.00) 		0.816
(1.00) 		0.933
(1.00) 		0.147
(0.869) 		0.975
(1.00) 		0.835
(1.00)
NF1 38 (13%) 252 0.213
(0.922) 		0.432
(1.00) 		0.595
(1.00) 		0.545
(1.00) 		0.741
(1.00) 		0.223
(0.923) 		0.248
(0.933) 		0.795
(1.00) 		0.116
(0.863) 		0.212
(0.922)
PTEN 25 (9%) 265 0.109
(0.859) 		0.182
(0.904) 		0.0739
(0.844) 		0.0746
(0.844) 		0.128
(0.863) 		0.19
(0.909) 		0.202
(0.917) 		0.024
(0.728) 		0.0367
(0.748) 		0.289
(0.946)
RAC1 20 (7%) 270 0.101
(0.844) 		0.195
(0.917) 		0.754
(1.00) 		0.438
(1.00) 		0.808
(1.00) 		0.668
(1.00) 		0.234
(0.931) 		0.397
(1.00) 		0.952
(1.00) 		0.0537
(0.79)
ARID2 37 (13%) 253 0.879
(1.00) 		0.0247
(0.728) 		0.768
(1.00) 		0.748
(1.00) 		1
(1.00) 		0.491
(1.00) 		0.0972
(0.844) 		0.0997
(0.844) 		1
(1.00) 		0.161
(0.869)
C15ORF23 19 (7%) 271 0.955
(1.00) 		0.00899
(0.478) 		0.696
(1.00) 		0.753
(1.00) 		0.458
(1.00) 		0.375
(1.00) 		0.493
(1.00) 		0.935
(1.00) 		0.943
(1.00) 		0.761
(1.00)
NUDT11 8 (3%) 282 0.9
(1.00) 		0.741
(1.00) 		0.32
(0.98) 		1
(1.00) 		0.293
(0.955) 		0.535
(1.00) 		0.469
(1.00) 		0.867
(1.00) 		1
(1.00) 		0.238
(0.933)
ZFX 15 (5%) 275 0.708
(1.00) 		0.8
(1.00) 		0.403
(1.00) 		1
(1.00) 		0.0754
(0.844) 		0.498
(1.00) 		0.137
(0.863) 		0.591
(1.00) 		0.0836
(0.844) 		0.0337
(0.748)
SLC38A4 33 (11%) 257 0.0832
(0.844) 		0.154
(0.869) 		0.48
(1.00) 		0.795
(1.00) 		0.00442
(0.381) 		0.0781
(0.844) 		0.725
(1.00) 		0.645
(1.00) 		0.248
(0.933) 		0.75
(1.00)
FAM58A 6 (2%) 284 0.172
(0.889) 		0.578
(1.00) 		1
(1.00) 		0.831
(1.00) 		0.0801
(0.844) 		0.394
(1.00) 		0.576
(1.00) 		0.00674
(0.435) 		0.0116
(0.556) 		0.495
(1.00)
PPP6C 20 (7%) 270 0.957
(1.00) 		0.563
(1.00) 		0.611
(1.00) 		0.3
(0.964) 		0.847
(1.00) 		0.098
(0.844) 		0.287
(0.945) 		0.0249
(0.728) 		0.726
(1.00) 		0.435
(1.00)
C7ORF58 37 (13%) 253 0.142
(0.869) 		0.139
(0.869) 		0.0964
(0.844) 		0.00236
(0.362) 		0.926
(1.00) 		0.605
(1.00) 		0.389
(1.00) 		0.654
(1.00) 		0.0669
(0.844) 		0.81
(1.00)
COL3A1 59 (20%) 231 0.412
(1.00) 		1
(1.00) 		0.758
(1.00) 		0.129
(0.863) 		0.41
(1.00) 		0.486
(1.00) 		0.847
(1.00) 		0.509
(1.00) 		0.963
(1.00) 		0.437
(1.00)
CDK4 8 (3%) 282 1
(1.00) 		0.432
(1.00) 		0.0599
(0.822) 		0.913
(1.00) 		1
(1.00) 		0.63
(1.00) 		0.71
(1.00) 		0.247
(0.933) 		0.0764
(0.844) 		0.161
(0.869)
DSG3 48 (17%) 242 0.618
(1.00) 		0.941
(1.00) 		0.132
(0.863) 		0.762
(1.00) 		0.921
(1.00) 		0.981
(1.00) 		0.663
(1.00) 		0.641
(1.00) 		0.0826
(0.844) 		0.842
(1.00)
MLL 40 (14%) 250 0.932
(1.00) 		0.712
(1.00) 		0.283
(0.945) 		0.397
(1.00) 		0.226
(0.923) 		0.716
(1.00) 		0.502
(1.00) 		0.821
(1.00) 		0.409
(1.00) 		0.962
(1.00)
DDX3X 20 (7%) 270 0.229
(0.923) 		1
(1.00) 		0.792
(1.00) 		0.182
(0.904) 		0.624
(1.00) 		0.505
(1.00) 		0.832
(1.00) 		0.55
(1.00) 		0.727
(1.00) 		0.197
(0.917)
HSD11B1 14 (5%) 276 0.478
(1.00) 		0.209
(0.918) 		0.357
(1.00) 		0.167
(0.877) 		0.216
(0.923) 		0.464
(1.00) 		0.499
(1.00) 		0.961
(1.00) 		0.816
(1.00) 		0.871
(1.00)
ALPK2 47 (16%) 243 0.368
(1.00) 		0.428
(1.00) 		0.276
(0.945) 		0.967
(1.00) 		0.381
(1.00) 		0.988
(1.00) 		0.409
(1.00) 		0.675
(1.00) 		0.817
(1.00) 		0.673
(1.00)
ATP5F1 6 (2%) 284 0.663
(1.00) 		0.34
(1.00) 		0.179
(0.904) 		0.756
(1.00) 		0.52
(1.00) 		0.704
(1.00) 		0.892
(1.00) 		0.749
(1.00) 		0.134
(0.863) 		1
(1.00)
RPTN 42 (14%) 248 0.616
(1.00) 		0.00764
(0.435) 		0.287
(0.945) 		0.721
(1.00) 		0.27
(0.945) 		0.945
(1.00) 		0.919
(1.00) 		0.519
(1.00) 		0.527
(1.00) 		0.734
(1.00)
KRTAP5-10 10 (3%) 280 0.299
(0.964) 		0.657
(1.00) 		0.62
(1.00) 		0.185
(0.904) 		0.567
(1.00) 		0.526
(1.00) 		0.54
(1.00) 		0.0526
(0.789) 		0.607
(1.00) 		0.474
(1.00)
GML 11 (4%) 279 0.0248
(0.728) 		0.796
(1.00) 		0.801
(1.00) 		0.22
(0.923) 		0.686
(1.00) 		0.625
(1.00) 		0.452
(1.00) 		0.691
(1.00) 		0.426
(1.00) 		0.545
(1.00)
MAP2K1 15 (5%) 275 0.229
(0.923) 		0.00468
(0.381) 		0.254
(0.933) 		0.0295
(0.748) 		0.124
(0.863) 		0.0887
(0.844) 		0.707
(1.00) 		0.596
(1.00) 		0.0977
(0.844) 		0.366
(1.00)
IDH1 15 (5%) 275 0.713
(1.00) 		0.108
(0.858) 		0.594
(1.00) 		0.286
(0.945) 		0.5
(1.00) 		0.639
(1.00) 		0.0357
(0.748) 		0.638
(1.00) 		0.132
(0.863) 		0.0606
(0.822)
KEL 36 (12%) 254 0.0165
(0.604) 		0.31
(0.964) 		0.725
(1.00) 		0.667
(1.00) 		0.00286
(0.362) 		0.0732
(0.844) 		0.135
(0.863) 		0.465
(1.00) 		0.253
(0.933) 		0.262
(0.944)
RQCD1 9 (3%) 281 0.201
(0.917) 		0.176
(0.898) 		0.239
(0.933) 		0.929
(1.00) 		0.531
(1.00) 		1
(1.00) 		0.759
(1.00) 		0.134
(0.863) 		0.0401
(0.748) 		0.885
(1.00)
NGF 9 (3%) 281 0.103
(0.844) 		0.837
(1.00) 		0.0979
(0.844) 		1
(1.00) 		0.698
(1.00) 		0.699
(1.00) 		0.691
(1.00) 		0.891
(1.00) 		0.112
(0.863) 		0.793
(1.00)
DMC1 11 (4%) 279 0.465
(1.00) 		0.428
(1.00) 		0.0316
(0.748) 		0.307
(0.964) 		0.0133
(0.599) 		0.275
(0.945) 		0.0215
(0.717) 		0.601
(1.00) 		0.00781
(0.435) 		0.00283
(0.362)
TRERF1 26 (9%) 264 0.0324
(0.748) 		0.445
(1.00) 		0.1
(0.844) 		0.838
(1.00) 		0.164
(0.869) 		0.0965
(0.844) 		0.43
(1.00) 		0.725
(1.00) 		0.0519
(0.789) 		0.749
(1.00)
CYP3A5 13 (4%) 277 0.88
(1.00) 		0.287
(0.945) 		0.325
(0.983) 		0.132
(0.863) 		0.403
(1.00) 		0.612
(1.00) 		0.647
(1.00) 		0.448
(1.00) 		0.927
(1.00) 		0.813
(1.00)
NBPF1 26 (9%) 264 0.612
(1.00) 		0.208
(0.918) 		0.082
(0.844) 		0.677
(1.00) 		0.247
(0.933) 		0.449
(1.00) 		0.442
(1.00) 		0.83
(1.00) 		0.122
(0.863) 		0.865
(1.00)
ZNF780B 10 (3%) 280 0.0757
(0.844) 		0.56
(1.00) 		0.491
(1.00) 		0.515
(1.00) 		0.613
(1.00) 		0.636
(1.00) 		0.506
(1.00) 		0.75
(1.00) 		0.763
(1.00) 		0.689
(1.00)
STK19 14 (5%) 276 0.735
(1.00) 		0.0394
(0.748) 		0.261
(0.944) 		0.846
(1.00) 		0.94
(1.00) 		0.462
(1.00) 		0.278
(0.945) 		0.202
(0.917) 		0.77
(1.00) 		0.424
(1.00)
KYNU 16 (6%) 274 0.811
(1.00) 		0.949
(1.00) 		0.532
(1.00) 		0.887
(1.00) 		0.397
(1.00) 		0.165
(0.871) 		0.765
(1.00) 		0.884
(1.00) 		0.665
(1.00) 		0.259
(0.944)
ANO4 46 (16%) 244 0.451
(1.00) 		0.401
(1.00) 		0.137
(0.863) 		0.816
(1.00) 		0.445
(1.00) 		0.899
(1.00) 		0.959
(1.00) 		0.99
(1.00) 		0.424
(1.00) 		0.759
(1.00)
SLC27A5 10 (3%) 280 0.438
(1.00) 		0.211
(0.92) 		0.386
(1.00) 		0.694
(1.00) 		0.72
(1.00) 		0.825
(1.00) 		0.0607
(0.822) 		0.509
(1.00) 		0.237
(0.933) 		0.275
(0.945)
POTEG 27 (9%) 263 0.0329
(0.748) 		0.0411
(0.748) 		0.206
(0.918) 		0.829
(1.00) 		0.204
(0.918) 		0.404
(1.00) 		0.16
(0.869) 		0.645
(1.00) 		0.561
(1.00) 		0.827
(1.00)
TPTE 64 (22%) 226 0.73
(1.00) 		0.0358
(0.748) 		0.0309
(0.748) 		0.981
(1.00) 		0.22
(0.923) 		0.816
(1.00) 		0.765
(1.00) 		0.953
(1.00) 		0.638
(1.00) 		0.341
(1.00)
USH2A 91 (31%) 199 0.279
(0.945) 		0.503
(1.00) 		0.13
(0.863) 		0.83
(1.00) 		0.308
(0.964) 		0.847
(1.00) 		0.643
(1.00) 		0.271
(0.945) 		0.222
(0.923) 		0.227
(0.923)
XIRP2 98 (34%) 192 0.0832
(0.844) 		0.312
(0.966) 		0.152
(0.869) 		0.695
(1.00) 		0.239
(0.933) 		0.108
(0.858) 		0.324
(0.983) 		0.871
(1.00) 		0.728
(1.00) 		0.434
(1.00)
THSD7B 92 (32%) 198 0.0909
(0.844) 		0.209
(0.918) 		0.472
(1.00) 		0.599
(1.00) 		0.553
(1.00) 		0.129
(0.863) 		0.115
(0.863) 		0.882
(1.00) 		0.224
(0.923) 		0.695
(1.00)
USP17L2 22 (8%) 268 0.39
(1.00) 		0.0338
(0.748) 		0.867
(1.00) 		0.687
(1.00) 		0.35
(1.00) 		0.57
(1.00) 		0.756
(1.00) 		0.19
(0.909) 		0.657
(1.00) 		0.792
(1.00)
S100A8 8 (3%) 282 0.355
(1.00) 		0.741
(1.00) 		0.121
(0.863) 		0.0358
(0.748) 		0.745
(1.00) 		0.734
(1.00) 		0.972
(1.00) 		0.708
(1.00) 		0.587
(1.00) 		0.752
(1.00)
CTNNB1 16 (6%) 274 0.856
(1.00) 		0.613
(1.00) 		0.151
(0.869) 		0.66
(1.00) 		0.228
(0.923) 		0.385
(1.00) 		0.991
(1.00) 		0.676
(1.00) 		0.737
(1.00) 		0.954
(1.00)
USP9X 17 (6%) 273 0.511
(1.00) 		0.632
(1.00) 		0.622
(1.00) 		0.089
(0.844) 		0.864
(1.00) 		0.907
(1.00) 		0.361
(1.00) 		0.274
(0.945) 		0.125
(0.863) 		0.526
(1.00)
C10ORF28 7 (2%) 283 0.632
(1.00) 		0.709
(1.00) 		0.419
(1.00) 		0.272
(0.945) 		0.514
(1.00) 		0.297
(0.961) 		0.694
(1.00) 		0.157
(0.869) 		0.157
(0.869) 		0.563
(1.00)
MAN1A1 15 (5%) 275 0.501
(1.00) 		0.421
(1.00) 		0.501
(1.00) 		0.137
(0.863) 		0.158
(0.869) 		0.491
(1.00) 		0.373
(1.00) 		0.04
(0.748) 		0.122
(0.863) 		0.561
(1.00)
OXA1L 8 (3%) 282 0.61
(1.00) 		0.54
(1.00) 		1
(1.00) 		0.546
(1.00) 		0.44
(1.00) 		0.805
(1.00) 		0.646
(1.00) 		0.553
(1.00) 		0.0867
(0.844) 		0.302
(0.964)
NAP1L2 25 (9%) 265 0.385
(1.00) 		1
(1.00) 		0.803
(1.00) 		0.603
(1.00) 		0.455
(1.00) 		0.555
(1.00) 		0.609
(1.00) 		0.878
(1.00) 		0.00488
(0.381) 		0.838
(1.00)
MPP7 32 (11%) 258 0.31
(0.964) 		0.0604
(0.822) 		0.36
(1.00) 		0.25
(0.933) 		0.145
(0.869) 		0.213
(0.922) 		0.764
(1.00) 		0.813
(1.00) 		0.8
(1.00) 		0.826
(1.00)
BTK 15 (5%) 275 0.0896
(0.844) 		0.181
(0.904) 		0.497
(1.00) 		0.453
(1.00) 		0.00433
(0.381) 		0.329
(0.986) 		0.826
(1.00) 		0.364
(1.00) 		0.48
(1.00) 		0.145
(0.869)
SLC9A11 44 (15%) 246 0.189
(0.909) 		0.243
(0.933) 		0.522
(1.00) 		0.699
(1.00) 		0.565
(1.00) 		0.898
(1.00) 		0.926
(1.00) 		0.629
(1.00) 		0.774
(1.00) 		0.65
(1.00)
EMG1 7 (2%) 283 0.444
(1.00) 		0.801
(1.00) 		0.635
(1.00) 		0.27
(0.945) 		0.163
(0.869) 		0.365
(1.00) 		0.707
(1.00) 		1
(1.00) 		0.8
(1.00) 		0.161
(0.869)
SELP 33 (11%) 257 0.821
(1.00) 		0.0597
(0.822) 		0.0425
(0.748) 		0.0773
(0.844) 		0.308
(0.964) 		0.328
(0.986) 		0.977
(1.00) 		0.474
(1.00) 		0.629
(1.00) 		0.974
(1.00)
PARM1 19 (7%) 271 0.69
(1.00) 		1
(1.00) 		0.412
(1.00) 		0.326
(0.983) 		0.913
(1.00) 		0.12
(0.863) 		0.374
(1.00) 		0.314
(0.968) 		0.674
(1.00) 		0.186
(0.904)
ACSBG1 13 (4%) 277 0.232
(0.93) 		0.558
(1.00) 		0.769
(1.00) 		0.156
(0.869) 		0.431
(1.00) 		0.418
(1.00) 		1
(1.00) 		0.307
(0.964) 		0.931
(1.00) 		0.508
(1.00)
CCK 6 (2%) 284 0.398
(1.00) 		0.58
(1.00) 		0.288
(0.946) 		0.0143
(0.604) 		0.449
(1.00) 		0.849
(1.00) 		0.675
(1.00) 		1
(1.00) 		1
(1.00) 		0.664
(1.00)
C1QTNF9 16 (6%) 274 0.556
(1.00) 		0.726
(1.00) 		0.713
(1.00) 		0.835
(1.00) 		1
(1.00) 		0.361
(1.00) 		0.543
(1.00) 		0.186
(0.904) 		0.942
(1.00) 		0.558
(1.00)
UBE2V2 3 (1%) 287 0.782
(1.00) 		1
(1.00) 		0.202
(0.917) 		0.713
(1.00) 		1
(1.00) 		1
(1.00) 		0.191
(0.909) 		1
(1.00)
BOLA1 3 (1%) 287 0.267
(0.945) 		0.785
(1.00) 		0.777
(1.00) 		0.134
(0.863) 		0.89
(1.00) 		0.665
(1.00) 		0.281
(0.945) 		0.856
(1.00)
IFNGR2 4 (1%) 286 1
(1.00) 		0.461
(1.00) 		0.701
(1.00) 		0.0689
(0.844) 		0.466
(1.00) 		0.253
(0.933) 		0.864
(1.00) 		0.9
(1.00) 		0.829
(1.00) 		1
(1.00)
KRAS 6 (2%) 284 0.131
(0.863) 		0.512
(1.00) 		0.164
(0.869) 		0.547
(1.00) 		0.121
(0.863) 		0.201
(0.917) 		0.375
(1.00) 		0.155
(0.869) 		0.273
(0.945) 		0.207
(0.918)
ZNF595 8 (3%) 282 0.752
(1.00) 		0.16
(0.869) 		0.335
(0.998) 		0.547
(1.00) 		0.4
(1.00) 		0.317
(0.972) 		0.825
(1.00) 		0.571
(1.00) 		0.354
(1.00) 		0.353
(1.00)
MMP27 13 (4%) 277 0.521
(1.00) 		0.819
(1.00) 		0.417
(1.00) 		1
(1.00) 		1
(1.00) 		0.98
(1.00) 		0.659
(1.00) 		0.542
(1.00) 		0.686
(1.00) 		0.714
(1.00)
POLR2B 10 (3%) 280 0.849
(1.00) 		0.0418
(0.748) 		0.0184
(0.634) 		0.135
(0.863) 		0.718
(1.00) 		0.648
(1.00) 		0.411
(1.00) 		0.398
(1.00) 		0.326
(0.983) 		0.922
(1.00)
CSN3 4 (1%) 286 0.0659
(0.844) 		0.241
(0.933) 		0.238
(0.933) 		0.589
(1.00) 		0.842
(1.00) 		0.475
(1.00) 		0.671
(1.00) 		0.823
(1.00) 		1
(1.00) 		0.257
(0.94)
CASP8 9 (3%) 281 0.482
(1.00) 		0.436
(1.00) 		0.435
(1.00) 		0.734
(1.00) 		0.0935
(0.844) 		0.969
(1.00) 		0.761
(1.00) 		0.651
(1.00) 		0.052
(0.789) 		0.958
(1.00)
PPFIA1 16 (6%) 274 0.808
(1.00) 		0.278
(0.945) 		0.51
(1.00) 		0.804
(1.00) 		1
(1.00) 		0.705
(1.00) 		0.523
(1.00) 		0.937
(1.00) 		0.0992
(0.844) 		0.308
(0.964)
ZNF490 16 (6%) 274 0.616
(1.00) 		0.65
(1.00) 		0.241
(0.933) 		0.129
(0.863) 		0.339
(1.00) 		0.577
(1.00) 		0.791
(1.00) 		0.246
(0.933) 		0.52
(1.00) 		0.513
(1.00)
IL5RA 16 (6%) 274 0.649
(1.00) 		0.613
(1.00) 		0.734
(1.00) 		0.0868
(0.844) 		0.422
(1.00) 		0.565
(1.00) 		0.427
(1.00) 		0.405
(1.00) 		0.246
(0.933) 		0.627
(1.00)
LILRB5 19 (7%) 271 0.0161
(0.604) 		0.0464
(0.776) 		0.854
(1.00) 		0.584
(1.00) 		0.0819
(0.844) 		0.748
(1.00) 		0.83
(1.00) 		0.986
(1.00) 		0.28
(0.945) 		0.603
(1.00)
C10ORF72 20 (7%) 270 0.11
(0.862) 		0.223
(0.923) 		0.196
(0.917) 		0.0425
(0.748) 		0.571
(1.00) 		0.437
(1.00) 		0.59
(1.00) 		0.191
(0.909) 		0.759
(1.00) 		0.387
(1.00)
C3ORF71 4 (1%) 286 0.568
(1.00) 		0.309
(0.964) 		0.915
(1.00) 		0.525
(1.00) 		0.158
(0.869) 		0.133
(0.863) 		0.252
(0.933) 		0.103
(0.844) 		0.827
(1.00) 		0.162
(0.869)
ZNF589 3 (1%) 287 1
(1.00) 		0.785
(1.00) 		0.516
(1.00) 		0.209
(0.918) 		0.737
(1.00) 		0.661
(1.00) 		0.282
(0.945) 		0.591
(1.00)
DSP 60 (21%) 230 0.0828
(0.844) 		0.512
(1.00) 		0.0979
(0.844) 		0.895
(1.00) 		0.233
(0.93) 		0.775
(1.00) 		0.628
(1.00) 		0.872
(1.00) 		0.803
(1.00) 		0.299
(0.964)
ZZZ3 3 (1%) 287 0.372
(1.00) 		1
(1.00) 		0.777
(1.00) 		0.499
(1.00) 		0.808
(1.00) 		0.517
(1.00) 		0.63
(1.00) 		0.355
(1.00)
MCART2 10 (3%) 280 0.604
(1.00) 		0.433
(1.00) 		0.707
(1.00) 		1
(1.00) 		0.2
(0.917) 		0.944
(1.00) 		0.84
(1.00) 		0.652
(1.00) 		0.915
(1.00) 		0.332
(0.992)
CD2 22 (8%) 268 0.696
(1.00) 		0.786
(1.00) 		0.885
(1.00) 		0.916
(1.00) 		0.925
(1.00) 		0.942
(1.00) 		0.965
(1.00) 		0.988
(1.00) 		0.959
(1.00) 		0.578
(1.00)
CD209 12 (4%) 278 0.66
(1.00) 		0.0438
(0.748) 		0.457
(1.00) 		1
(1.00) 		0.0623
(0.829) 		0.471
(1.00) 		0.634
(1.00) 		0.602
(1.00) 		0.814
(1.00) 		0.571
(1.00)
C2ORF16 29 (10%) 261 0.00309
(0.362) 		0.801
(1.00) 		0.652
(1.00) 		0.078
(0.844) 		0.175
(0.898) 		0.132
(0.863) 		0.306
(0.964) 		0.643
(1.00) 		0.0158
(0.604) 		0.281
(0.945)
GLRB 30 (10%) 260 0.592
(1.00) 		0.448
(1.00) 		0.805
(1.00) 		0.17
(0.88) 		0.163
(0.869) 		0.295
(0.958) 		0.617
(1.00) 		0.113
(0.863) 		0.511
(1.00) 		0.228
(0.923)
PKDREJ 30 (10%) 260 0.97
(1.00) 		0.54
(1.00) 		0.934
(1.00) 		0.945
(1.00) 		0.323
(0.983) 		0.799
(1.00) 		0.207
(0.918) 		0.795
(1.00) 		0.262
(0.944) 		0.885
(1.00)
PTPRT 86 (30%) 204 0.679
(1.00) 		0.0478
(0.778) 		0.235
(0.931) 		0.922
(1.00) 		0.76
(1.00) 		0.874
(1.00) 		0.61
(1.00) 		0.0778
(0.844) 		0.0826
(0.844) 		0.0296
(0.748)
FAM55C 6 (2%) 284 0.883
(1.00) 		0.88
(1.00) 		1
(1.00) 		0.448
(1.00) 		0.781
(1.00) 		0.449
(1.00) 		0.251
(0.933) 		0.751
(1.00) 		1
(1.00) 		0.381
(1.00)
NUDT4 5 (2%) 285 0.851
(1.00) 		0.382
(1.00) 		0.359
(1.00) 		0.272
(0.945) 		0.538
(1.00) 		0.765
(1.00) 		0.184
(0.904) 		0.247
(0.933) 		0.738
(1.00) 		0.393
(1.00)
MYPOP 7 (2%) 283 0.0833
(0.844) 		0.438
(1.00) 		1
(1.00) 		0.431
(1.00) 		0.896
(1.00) 		0.813
(1.00) 		0.844
(1.00) 		0.149
(0.869) 		0.799
(1.00) 		1
(1.00)
MLL4 32 (11%) 258 0.544
(1.00) 		0.0644
(0.844) 		0.849
(1.00) 		0.683
(1.00) 		0.0434
(0.748) 		0.685
(1.00) 		0.712
(1.00) 		0.65
(1.00) 		0.28
(0.945) 		0.33
(0.988)
MMP1 14 (5%) 276 0.233
(0.93) 		0.159
(0.869) 		0.76
(1.00) 		0.868
(1.00) 		0.743
(1.00) 		0.682
(1.00) 		0.445
(1.00) 		0.0593
(0.822) 		1
(1.00) 		0.656
(1.00)
THEMIS 34 (12%) 256 0.036
(0.748) 		0.0477
(0.778) 		0.497
(1.00) 		0.617
(1.00) 		0.532
(1.00) 		0.398
(1.00) 		0.253
(0.933) 		0.229
(0.923) 		0.459
(1.00) 		0.518
(1.00)
ACO1 8 (3%) 282 0.0718
(0.844) 		0.817
(1.00) 		0.0383
(0.748) 		0.831
(1.00) 		0.744
(1.00) 		0.759
(1.00) 		0.0611
(0.822) 		0.104
(0.844) 		0.453
(1.00) 		1
(1.00)
MUC7 17 (6%) 273 0.667
(1.00) 		0.816
(1.00) 		0.959
(1.00) 		0.691
(1.00) 		0.181
(0.904) 		0.292
(0.954) 		0.038
(0.748) 		0.254
(0.933) 		0.00739
(0.435) 		0.314
(0.968)
TP63 50 (17%) 240 0.96
(1.00) 		0.0788
(0.844) 		0.0119
(0.556) 		0.46
(1.00) 		0.132
(0.863) 		0.59
(1.00) 		0.493
(1.00) 		0.727
(1.00) 		0.264
(0.945) 		0.535
(1.00)
APCS 13 (4%) 277 0.824
(1.00) 		0.446
(1.00) 		0.795
(1.00) 		1
(1.00) 		0.489
(1.00) 		0.513
(1.00) 		0.98
(1.00) 		0.37
(1.00) 		0.723
(1.00) 		0.47
(1.00)
GPX5 18 (6%) 272 0.785
(1.00) 		0.0327
(0.748) 		0.423
(1.00) 		0.885
(1.00) 		0.866
(1.00) 		0.0313
(0.748) 		0.17
(0.88) 		0.45
(1.00) 		1
(1.00) 		0.321
(0.981)
PDK4 7 (2%) 283 1
(1.00) 		0.268
(0.945) 		0.0221
(0.717) 		0.112
(0.863) 		0.629
(1.00) 		0.287
(0.945) 		0.608
(1.00) 		0.0525
(0.789) 		1
(1.00) 		0.529
(1.00)
EPS8 7 (2%) 283 0.184
(0.904) 		0.802
(1.00) 		1
(1.00) 		0.806
(1.00) 		0.302
(0.964) 		0.564
(1.00) 		0.969
(1.00) 		0.643
(1.00) 		0.562
(1.00) 		0.759
(1.00)
LUZP1 6 (2%) 284 0.397
(1.00) 		0.248
(0.933) 		1
(1.00) 		0.479
(1.00) 		0.385
(1.00) 		0.803
(1.00) 		0.531
(1.00) 		0.566
(1.00) 		0.159
(0.869) 		0.592
(1.00)
C10ORF118 7 (2%) 283 0.704
(1.00) 		0.709
(1.00) 		0.76
(1.00) 		0.585
(1.00) 		0.632
(1.00) 		0.085
(0.844) 		0.969
(1.00) 		0.91
(1.00) 		0.563
(1.00) 		0.714
(1.00)
OR51S1 30 (10%) 260 0.807
(1.00) 		0.781
(1.00) 		0.647
(1.00) 		0.261
(0.944) 		0.464
(1.00) 		0.528
(1.00) 		0.781
(1.00) 		0.897
(1.00) 		0.054
(0.79) 		0.0771
(0.844)
AMPD3 22 (8%) 268 0.347
(1.00) 		0.104
(0.844) 		0.0955
(0.844) 		0.443
(1.00) 		0.466
(1.00) 		0.465
(1.00) 		0.99
(1.00) 		0.858
(1.00) 		0.735
(1.00) 		0.184
(0.904)
CD300E 10 (3%) 280 0.398
(1.00) 		0.714
(1.00) 		0.803
(1.00) 		0.794
(1.00) 		0.135
(0.863) 		0.399
(1.00) 		0.819
(1.00) 		0.508
(1.00) 		0.437
(1.00) 		0.42
(1.00)
SAG 11 (4%) 279 0.346
(1.00) 		0.685
(1.00) 		0.202
(0.917) 		0.169
(0.88) 		0.638
(1.00) 		0.614
(1.00) 		0.467
(1.00) 		0.376
(1.00) 		0.738
(1.00) 		0.119
(0.863)
DDX17 8 (3%) 282 0.392
(1.00) 		0.226
(0.923) 		0.894
(1.00) 		0.938
(1.00) 		1
(1.00) 		0.693
(1.00) 		0.538
(1.00) 		0.728
(1.00) 		0.498
(1.00) 		0.642
(1.00)
RUFY4 11 (4%) 279 0.631
(1.00) 		0.142
(0.869) 		0.653
(1.00) 		0.725
(1.00) 		0.687
(1.00) 		0.865
(1.00) 		0.765
(1.00) 		0.879
(1.00) 		0.928
(1.00) 		0.772
(1.00)
MAP3K5 20 (7%) 270 0.137
(0.863) 		0.344
(1.00) 		0.149
(0.869) 		0.591
(1.00) 		0.0108
(0.547) 		0.721
(1.00) 		0.498
(1.00) 		0.407
(1.00) 		0.797
(1.00) 		0.22
(0.923)
NTN4 15 (5%) 275 0.712
(1.00) 		0.153
(0.869) 		0.5
(1.00) 		0.639
(1.00) 		0.948
(1.00) 		0.854
(1.00) 		0.677
(1.00) 		0.145
(0.869) 		0.848
(1.00) 		0.747
(1.00)
BCMO1 17 (6%) 273 0.1
(0.844) 		0.359
(1.00) 		0.491
(1.00) 		0.501
(1.00) 		0.267
(0.945) 		0.931
(1.00) 		0.873
(1.00) 		0.953
(1.00) 		0.134
(0.863) 		0.496
(1.00)
OR11H12 15 (5%) 275 0.673
(1.00) 		0.478
(1.00) 		0.309
(0.964) 		0.704
(1.00) 		1
(1.00) 		0.841
(1.00) 		0.483
(1.00) 		0.688
(1.00) 		0.423
(1.00) 		0.515
(1.00)
SI 67 (23%) 223 0.0487
(0.781) 		0.361
(1.00) 		0.48
(1.00) 		0.366
(1.00) 		0.371
(1.00) 		0.427
(1.00) 		0.662
(1.00) 		0.585
(1.00) 		0.0886
(0.844) 		0.0857
(0.844)
ADAM33 16 (6%) 274 0.684
(1.00) 		0.224
(0.923) 		0.181
(0.904) 		0.979
(1.00) 		0.809
(1.00) 		0.886
(1.00) 		0.96
(1.00) 		0.717
(1.00) 		1
(1.00) 		0.925
(1.00)
RICTOR 12 (4%) 278 0.155
(0.869) 		0.709
(1.00) 		0.679
(1.00) 		0.602
(1.00) 		0.708
(1.00) 		0.879
(1.00) 		0.677
(1.00) 		0.72
(1.00) 		0.859
(1.00) 		0.812
(1.00)
MED17 5 (2%) 285 0.225
(0.923) 		0.627
(1.00) 		0.637
(1.00) 		0.915
(1.00) 		0.108
(0.858) 		0.53
(1.00) 		0.103
(0.844) 		0.286
(0.945) 		0.531
(1.00) 		0.0181
(0.634)
'NRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.047

Table S1.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
NRAS MUTATED 35 33 19
NRAS WILD-TYPE 41 76 86

Figure S1.  Get High-res Image Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.6

Table S2.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
NRAS MUTATED 39 25 23
NRAS WILD-TYPE 59 91 53

Figure S2.  Get High-res Image Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S3.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
NRAS MUTATED 16 17 10 7
NRAS WILD-TYPE 34 34 32 19
'NRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.95

Table S4.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
NRAS MUTATED 11 19 10 10
NRAS WILD-TYPE 16 39 25 39
'NRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S5.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
NRAS MUTATED 33 23 31
NRAS WILD-TYPE 70 63 70
'NRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S6.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
NRAS MUTATED 29 24 20 14
NRAS WILD-TYPE 54 57 58 34
'NRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.993 (Fisher's exact test), Q value = 1

Table S7.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
NRAS MUTATED 18 22 28 4 11
NRAS WILD-TYPE 43 50 63 12 29
'NRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S8.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
NRAS MUTATED 35 21 17 10
NRAS WILD-TYPE 64 50 57 26
'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.032

Table S9.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
NRAS MUTATED 11 23 46
NRAS WILD-TYPE 64 66 59

Figure S3.  Get High-res Image Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.92

Table S10.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
NRAS MUTATED 42 16 12 10
NRAS WILD-TYPE 82 40 49 18
'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S11.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
TP53 MUTATED 10 19 19
TP53 WILD-TYPE 66 90 86
'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00604 (Fisher's exact test), Q value = 0.42

Table S12.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
TP53 MUTATED 24 19 5
TP53 WILD-TYPE 74 97 71

Figure S4.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.92

Table S13.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
TP53 MUTATED 5 8 10 2
TP53 WILD-TYPE 45 43 32 24
'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.96

Table S14.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
TP53 MUTATED 3 13 4 5
TP53 WILD-TYPE 24 45 31 44
'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.87

Table S15.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
TP53 MUTATED 14 20 14
TP53 WILD-TYPE 89 66 87
'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S16.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
TP53 MUTATED 13 16 10 9
TP53 WILD-TYPE 70 65 68 39
'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.92

Table S17.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
TP53 MUTATED 14 10 14 0 5
TP53 WILD-TYPE 47 62 77 16 35
'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S18.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
TP53 MUTATED 19 9 11 4
TP53 WILD-TYPE 80 62 63 32
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S19.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
TP53 MUTATED 12 10 20
TP53 WILD-TYPE 63 79 85
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S20.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
TP53 MUTATED 23 8 7 4
TP53 WILD-TYPE 101 48 54 24
'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0519 (Fisher's exact test), Q value = 0.79

Table S21.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CDKN2A MUTATED 8 11 22
CDKN2A WILD-TYPE 68 98 83
'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.86

Table S22.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CDKN2A MUTATED 18 17 6
CDKN2A WILD-TYPE 80 99 70
'CDKN2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.87

Table S23.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
CDKN2A MUTATED 7 5 6 8
CDKN2A WILD-TYPE 43 46 36 18
'CDKN2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S24.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CDKN2A MUTATED 5 8 5 8
CDKN2A WILD-TYPE 22 50 30 41
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.977 (Fisher's exact test), Q value = 1

Table S25.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CDKN2A MUTATED 14 12 15
CDKN2A WILD-TYPE 89 74 86
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S26.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CDKN2A MUTATED 11 12 13 5
CDKN2A WILD-TYPE 72 69 65 43
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S27.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
CDKN2A MUTATED 10 10 13 1 5
CDKN2A WILD-TYPE 51 62 78 15 35
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.87

Table S28.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
CDKN2A MUTATED 20 9 6 4
CDKN2A WILD-TYPE 79 62 68 32
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S29.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
CDKN2A MUTATED 11 12 15
CDKN2A WILD-TYPE 64 77 90
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S30.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
CDKN2A MUTATED 20 6 8 4
CDKN2A WILD-TYPE 104 50 53 24
'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.92

Table S31.  Gene #4: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
NF1 MUTATED 14 14 10
NF1 WILD-TYPE 62 95 95
'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S32.  Gene #4: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
NF1 MUTATED 16 12 10
NF1 WILD-TYPE 82 104 66
'NF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S33.  Gene #4: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
NF1 MUTATED 6 9 9 3
NF1 WILD-TYPE 44 42 33 23
'NF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S34.  Gene #4: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
NF1 MUTATED 4 7 5 11
NF1 WILD-TYPE 23 51 30 38
'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S35.  Gene #4: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
NF1 MUTATED 15 12 11
NF1 WILD-TYPE 88 74 90
'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.92

Table S36.  Gene #4: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
NF1 MUTATED 14 7 8 9
NF1 WILD-TYPE 69 74 70 39
'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.93

Table S37.  Gene #4: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
NF1 MUTATED 12 7 13 0 6
NF1 WILD-TYPE 49 65 78 16 34
'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S38.  Gene #4: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
NF1 MUTATED 11 10 12 5
NF1 WILD-TYPE 88 61 62 31
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.86

Table S39.  Gene #4: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
NF1 MUTATED 14 7 15
NF1 WILD-TYPE 61 82 90
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.92

Table S40.  Gene #4: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
NF1 MUTATED 22 4 6 4
NF1 WILD-TYPE 102 52 55 24
'PTEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.86

Table S41.  Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PTEN MUTATED 5 6 14
PTEN WILD-TYPE 71 103 91
'PTEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.9

Table S42.  Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PTEN MUTATED 10 6 9
PTEN WILD-TYPE 88 110 67
'PTEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0739 (Fisher's exact test), Q value = 0.84

Table S43.  Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
PTEN MUTATED 5 7 1 0
PTEN WILD-TYPE 45 44 41 26
'PTEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0746 (Fisher's exact test), Q value = 0.84

Table S44.  Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PTEN MUTATED 1 8 0 4
PTEN WILD-TYPE 26 50 35 45
'PTEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.86

Table S45.  Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PTEN MUTATED 5 7 13
PTEN WILD-TYPE 98 79 88
'PTEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.91

Table S46.  Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PTEN MUTATED 8 6 10 1
PTEN WILD-TYPE 75 75 68 47
'PTEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.92

Table S47.  Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
PTEN MUTATED 3 7 6 2 7
PTEN WILD-TYPE 58 65 85 14 33
'PTEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.024 (Fisher's exact test), Q value = 0.73

Table S48.  Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
PTEN MUTATED 11 5 2 7
PTEN WILD-TYPE 88 66 72 29

Figure S5.  Get High-res Image Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 0.75

Table S49.  Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
PTEN MUTATED 2 12 10
PTEN WILD-TYPE 73 77 95

Figure S6.  Get High-res Image Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.95

Table S50.  Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
PTEN MUTATED 8 5 6 5
PTEN WILD-TYPE 116 51 55 23
'RAC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.84

Table S51.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
RAC1 MUTATED 7 10 3
RAC1 WILD-TYPE 69 99 102
'RAC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.92

Table S52.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
RAC1 MUTATED 4 12 4
RAC1 WILD-TYPE 94 104 72
'RAC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S53.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
RAC1 MUTATED 5 3 4 1
RAC1 WILD-TYPE 45 48 38 25
'RAC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S54.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
RAC1 MUTATED 1 7 3 2
RAC1 WILD-TYPE 26 51 32 47
'RAC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S55.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
RAC1 MUTATED 7 7 6
RAC1 WILD-TYPE 96 79 95
'RAC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S56.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
RAC1 MUTATED 4 8 5 3
RAC1 WILD-TYPE 79 73 73 45
'RAC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.93

Table S57.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
RAC1 MUTATED 7 3 5 0 5
RAC1 WILD-TYPE 54 69 86 16 35
'RAC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S58.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
RAC1 MUTATED 6 7 3 4
RAC1 WILD-TYPE 93 64 71 32
'RAC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S59.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
RAC1 MUTATED 5 5 8
RAC1 WILD-TYPE 70 84 97
'RAC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0537 (Fisher's exact test), Q value = 0.79

Table S60.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
RAC1 MUTATED 9 0 6 3
RAC1 WILD-TYPE 115 56 55 25
'ARID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S61.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ARID2 MUTATED 11 13 13
ARID2 WILD-TYPE 65 96 92
'ARID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.73

Table S62.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ARID2 MUTATED 20 11 6
ARID2 WILD-TYPE 78 105 70

Figure S7.  Get High-res Image Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARID2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S63.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
ARID2 MUTATED 8 8 7 2
ARID2 WILD-TYPE 42 43 35 24
'ARID2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S64.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ARID2 MUTATED 4 11 4 6
ARID2 WILD-TYPE 23 47 31 43
'ARID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S65.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ARID2 MUTATED 13 11 13
ARID2 WILD-TYPE 90 75 88
'ARID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S66.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ARID2 MUTATED 14 11 7 5
ARID2 WILD-TYPE 69 70 71 43
'ARID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0972 (Fisher's exact test), Q value = 0.84

Table S67.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
ARID2 MUTATED 4 10 12 0 9
ARID2 WILD-TYPE 57 62 79 16 31
'ARID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0997 (Fisher's exact test), Q value = 0.84

Table S68.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ARID2 MUTATED 13 6 7 9
ARID2 WILD-TYPE 86 65 67 27
'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S69.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
ARID2 MUTATED 10 11 14
ARID2 WILD-TYPE 65 78 91
'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.87

Table S70.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
ARID2 MUTATED 13 9 6 7
ARID2 WILD-TYPE 111 47 55 21
'C15ORF23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S71.  Gene #8: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
C15ORF23 MUTATED 5 8 6
C15ORF23 WILD-TYPE 71 101 99
'C15ORF23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00899 (Fisher's exact test), Q value = 0.48

Table S72.  Gene #8: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
C15ORF23 MUTATED 9 10 0
C15ORF23 WILD-TYPE 89 106 76

Figure S8.  Get High-res Image Gene #8: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C15ORF23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S73.  Gene #8: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
C15ORF23 MUTATED 4 3 1 2
C15ORF23 WILD-TYPE 46 48 41 24
'C15ORF23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S74.  Gene #8: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
C15ORF23 MUTATED 2 3 1 4
C15ORF23 WILD-TYPE 25 55 34 45
'C15ORF23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S75.  Gene #8: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
C15ORF23 MUTATED 5 8 6
C15ORF23 WILD-TYPE 98 78 95
'C15ORF23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S76.  Gene #8: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
C15ORF23 MUTATED 4 7 3 5
C15ORF23 WILD-TYPE 79 74 75 43
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S77.  Gene #8: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
C15ORF23 MUTATED 2 5 6 2 1
C15ORF23 WILD-TYPE 59 67 85 14 39
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S78.  Gene #8: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
C15ORF23 MUTATED 6 4 5 1
C15ORF23 WILD-TYPE 93 67 69 35
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S79.  Gene #8: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
C15ORF23 MUTATED 5 5 5
C15ORF23 WILD-TYPE 70 84 100
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S80.  Gene #8: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
C15ORF23 MUTATED 9 3 2 1
C15ORF23 WILD-TYPE 115 53 59 27
'NUDT11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S81.  Gene #9: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
NUDT11 MUTATED 2 4 2
NUDT11 WILD-TYPE 74 105 103
'NUDT11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S82.  Gene #9: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
NUDT11 MUTATED 3 4 1
NUDT11 WILD-TYPE 95 112 75
'NUDT11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.98

Table S83.  Gene #9: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
NUDT11 MUTATED 1 3 0 0
NUDT11 WILD-TYPE 49 48 42 26
'NUDT11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S84.  Gene #9: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
NUDT11 MUTATED 0 2 1 1
NUDT11 WILD-TYPE 27 56 34 48
'NUDT11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.95

Table S85.  Gene #9: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
NUDT11 MUTATED 1 4 3
NUDT11 WILD-TYPE 102 82 98
'NUDT11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S86.  Gene #9: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
NUDT11 MUTATED 1 4 2 1
NUDT11 WILD-TYPE 82 77 76 47
'NUDT11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S87.  Gene #9: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
NUDT11 MUTATED 1 3 1 1 1
NUDT11 WILD-TYPE 60 69 90 15 39
'NUDT11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S88.  Gene #9: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
NUDT11 MUTATED 3 2 1 1
NUDT11 WILD-TYPE 96 69 73 35
'NUDT11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S89.  Gene #9: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
NUDT11 MUTATED 2 2 3
NUDT11 WILD-TYPE 73 87 102
'NUDT11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.93

Table S90.  Gene #9: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
NUDT11 MUTATED 3 3 0 1
NUDT11 WILD-TYPE 121 53 61 27
'ZFX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S91.  Gene #10: 'ZFX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ZFX MUTATED 4 7 4
ZFX WILD-TYPE 72 102 101
'ZFX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S92.  Gene #10: 'ZFX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ZFX MUTATED 4 7 4
ZFX WILD-TYPE 94 109 72
'ZFX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S93.  Gene #10: 'ZFX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
ZFX MUTATED 1 4 2 0
ZFX WILD-TYPE 49 47 40 26
'ZFX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S94.  Gene #10: 'ZFX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ZFX MUTATED 1 3 1 2
ZFX WILD-TYPE 26 55 34 47
'ZFX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0754 (Fisher's exact test), Q value = 0.84

Table S95.  Gene #10: 'ZFX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ZFX MUTATED 5 8 2
ZFX WILD-TYPE 98 78 99
'ZFX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S96.  Gene #10: 'ZFX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ZFX MUTATED 4 5 2 4
ZFX WILD-TYPE 79 76 76 44
'ZFX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.86

Table S97.  Gene #10: 'ZFX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
ZFX MUTATED 4 1 9 0 1
ZFX WILD-TYPE 57 71 82 16 39
'ZFX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S98.  Gene #10: 'ZFX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ZFX MUTATED 7 2 5 1
ZFX WILD-TYPE 92 69 69 35
'ZFX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0836 (Fisher's exact test), Q value = 0.84

Table S99.  Gene #10: 'ZFX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
ZFX MUTATED 6 1 6
ZFX WILD-TYPE 69 88 99
'ZFX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0337 (Fisher's exact test), Q value = 0.75

Table S100.  Gene #10: 'ZFX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
ZFX MUTATED 11 0 2 0
ZFX WILD-TYPE 113 56 59 28

Figure S9.  Get High-res Image Gene #10: 'ZFX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLC38A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0832 (Fisher's exact test), Q value = 0.84

Table S101.  Gene #11: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SLC38A4 MUTATED 13 13 7
SLC38A4 WILD-TYPE 63 96 98
'SLC38A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.87

Table S102.  Gene #11: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SLC38A4 MUTATED 10 18 5
SLC38A4 WILD-TYPE 88 98 71
'SLC38A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S103.  Gene #11: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
SLC38A4 MUTATED 6 6 2 4
SLC38A4 WILD-TYPE 44 45 40 22
'SLC38A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S104.  Gene #11: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SLC38A4 MUTATED 3 5 3 7
SLC38A4 WILD-TYPE 24 53 32 42
'SLC38A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00442 (Fisher's exact test), Q value = 0.38

Table S105.  Gene #11: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SLC38A4 MUTATED 9 18 6
SLC38A4 WILD-TYPE 94 68 95

Figure S10.  Get High-res Image Gene #11: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC38A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0781 (Fisher's exact test), Q value = 0.84

Table S106.  Gene #11: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SLC38A4 MUTATED 6 11 6 10
SLC38A4 WILD-TYPE 77 70 72 38
'SLC38A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S107.  Gene #11: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
SLC38A4 MUTATED 8 8 10 0 5
SLC38A4 WILD-TYPE 53 64 81 16 35
'SLC38A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S108.  Gene #11: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
SLC38A4 MUTATED 8 9 10 4
SLC38A4 WILD-TYPE 91 62 64 32
'SLC38A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.93

Table S109.  Gene #11: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
SLC38A4 MUTATED 12 8 9
SLC38A4 WILD-TYPE 63 81 96
'SLC38A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S110.  Gene #11: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
SLC38A4 MUTATED 15 5 5 4
SLC38A4 WILD-TYPE 109 51 56 24
'FAM58A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.89

Table S111.  Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
FAM58A MUTATED 2 4 0
FAM58A WILD-TYPE 74 105 105
'FAM58A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S112.  Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
FAM58A MUTATED 1 4 1
FAM58A WILD-TYPE 97 112 75
'FAM58A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S113.  Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
FAM58A MUTATED 1 1 1 1
FAM58A WILD-TYPE 49 50 41 25
'FAM58A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S114.  Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
FAM58A MUTATED 0 1 1 2
FAM58A WILD-TYPE 27 57 34 47
'FAM58A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0801 (Fisher's exact test), Q value = 0.84

Table S115.  Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
FAM58A MUTATED 2 4 0
FAM58A WILD-TYPE 101 82 101
'FAM58A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S116.  Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
FAM58A MUTATED 2 2 0 2
FAM58A WILD-TYPE 81 79 78 46
'FAM58A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S117.  Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
FAM58A MUTATED 3 1 1 0 1
FAM58A WILD-TYPE 58 71 90 16 39
'FAM58A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00674 (Fisher's exact test), Q value = 0.44

Table S118.  Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
FAM58A MUTATED 0 0 5 1
FAM58A WILD-TYPE 99 71 69 35

Figure S11.  Get High-res Image Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FAM58A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.56

Table S119.  Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
FAM58A MUTATED 5 0 1
FAM58A WILD-TYPE 70 89 104

Figure S12.  Get High-res Image Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FAM58A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S120.  Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
FAM58A MUTATED 4 1 0 1
FAM58A WILD-TYPE 120 55 61 27
'PPP6C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S121.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PPP6C MUTATED 5 7 8
PPP6C WILD-TYPE 71 102 97
'PPP6C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S122.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PPP6C MUTATED 9 7 4
PPP6C WILD-TYPE 89 109 72
'PPP6C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S123.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
PPP6C MUTATED 5 2 2 2
PPP6C WILD-TYPE 45 49 40 24
'PPP6C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.96

Table S124.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PPP6C MUTATED 4 2 2 3
PPP6C WILD-TYPE 23 56 33 46
'PPP6C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S125.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PPP6C MUTATED 6 6 8
PPP6C WILD-TYPE 97 80 93
'PPP6C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.098 (Fisher's exact test), Q value = 0.84

Table S126.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PPP6C MUTATED 5 7 8 0
PPP6C WILD-TYPE 78 74 70 48
'PPP6C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.95

Table S127.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
PPP6C MUTATED 2 5 6 1 6
PPP6C WILD-TYPE 59 67 85 15 34
'PPP6C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0249 (Fisher's exact test), Q value = 0.73

Table S128.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
PPP6C MUTATED 8 5 1 6
PPP6C WILD-TYPE 91 66 73 30

Figure S13.  Get High-res Image Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PPP6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S129.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
PPP6C MUTATED 4 6 9
PPP6C WILD-TYPE 71 83 96
'PPP6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S130.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
PPP6C MUTATED 8 4 3 4
PPP6C WILD-TYPE 116 52 58 24
'C7ORF58 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.87

Table S131.  Gene #14: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
C7ORF58 MUTATED 7 11 19
C7ORF58 WILD-TYPE 69 98 86
'C7ORF58 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.87

Table S132.  Gene #14: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
C7ORF58 MUTATED 18 11 8
C7ORF58 WILD-TYPE 80 105 68
'C7ORF58 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0964 (Fisher's exact test), Q value = 0.84

Table S133.  Gene #14: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
C7ORF58 MUTATED 9 7 7 0
C7ORF58 WILD-TYPE 41 44 35 26
'C7ORF58 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00236 (Fisher's exact test), Q value = 0.36

Table S134.  Gene #14: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
C7ORF58 MUTATED 6 13 0 4
C7ORF58 WILD-TYPE 21 45 35 45

Figure S14.  Get High-res Image Gene #14: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C7ORF58 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S135.  Gene #14: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
C7ORF58 MUTATED 13 12 12
C7ORF58 WILD-TYPE 90 74 89
'C7ORF58 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S136.  Gene #14: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
C7ORF58 MUTATED 10 9 9 9
C7ORF58 WILD-TYPE 73 72 69 39
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S137.  Gene #14: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
C7ORF58 MUTATED 7 8 9 4 7
C7ORF58 WILD-TYPE 54 64 82 12 33
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S138.  Gene #14: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
C7ORF58 MUTATED 10 8 11 6
C7ORF58 WILD-TYPE 89 63 63 30
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 0.84

Table S139.  Gene #14: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
C7ORF58 MUTATED 14 6 14
C7ORF58 WILD-TYPE 61 83 91
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S140.  Gene #14: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
C7ORF58 MUTATED 16 6 7 5
C7ORF58 WILD-TYPE 108 50 54 23
'COL3A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S141.  Gene #15: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
COL3A1 MUTATED 16 18 25
COL3A1 WILD-TYPE 60 91 80
'COL3A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S142.  Gene #15: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
COL3A1 MUTATED 20 24 15
COL3A1 WILD-TYPE 78 92 61
'COL3A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S143.  Gene #15: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
COL3A1 MUTATED 10 9 11 6
COL3A1 WILD-TYPE 40 42 31 20
'COL3A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.86

Table S144.  Gene #15: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
COL3A1 MUTATED 7 12 3 14
COL3A1 WILD-TYPE 20 46 32 35
'COL3A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S145.  Gene #15: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
COL3A1 MUTATED 18 16 25
COL3A1 WILD-TYPE 85 70 76
'COL3A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S146.  Gene #15: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
COL3A1 MUTATED 18 12 19 10
COL3A1 WILD-TYPE 65 69 59 38
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S147.  Gene #15: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
COL3A1 MUTATED 13 17 16 2 8
COL3A1 WILD-TYPE 48 55 75 14 32
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S148.  Gene #15: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
COL3A1 MUTATED 16 17 14 9
COL3A1 WILD-TYPE 83 54 60 27
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S149.  Gene #15: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
COL3A1 MUTATED 16 19 21
COL3A1 WILD-TYPE 59 70 84
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S150.  Gene #15: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
COL3A1 MUTATED 27 8 16 5
COL3A1 WILD-TYPE 97 48 45 23
'CDK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S151.  Gene #16: 'CDK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CDK4 MUTATED 2 3 3
CDK4 WILD-TYPE 74 106 102
'CDK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S152.  Gene #16: 'CDK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CDK4 MUTATED 1 4 3
CDK4 WILD-TYPE 97 112 73
'CDK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0599 (Fisher's exact test), Q value = 0.82

Table S153.  Gene #16: 'CDK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
CDK4 MUTATED 2 0 0 2
CDK4 WILD-TYPE 48 51 42 24
'CDK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S154.  Gene #16: 'CDK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CDK4 MUTATED 1 1 1 1
CDK4 WILD-TYPE 26 57 34 48
'CDK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S155.  Gene #16: 'CDK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CDK4 MUTATED 3 2 3
CDK4 WILD-TYPE 100 84 98
'CDK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S156.  Gene #16: 'CDK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CDK4 MUTATED 3 2 3 0
CDK4 WILD-TYPE 80 79 75 48
'CDK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S157.  Gene #16: 'CDK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
CDK4 MUTATED 2 3 1 0 1
CDK4 WILD-TYPE 59 69 90 16 39
'CDK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.93

Table S158.  Gene #16: 'CDK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
CDK4 MUTATED 1 4 1 1
CDK4 WILD-TYPE 98 67 73 35
'CDK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0764 (Fisher's exact test), Q value = 0.84

Table S159.  Gene #16: 'CDK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
CDK4 MUTATED 0 5 2
CDK4 WILD-TYPE 75 84 103
'CDK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.87

Table S160.  Gene #16: 'CDK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
CDK4 MUTATED 1 3 2 1
CDK4 WILD-TYPE 123 53 59 27
'DSG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S161.  Gene #17: 'DSG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
DSG3 MUTATED 15 18 15
DSG3 WILD-TYPE 61 91 90
'DSG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S162.  Gene #17: 'DSG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
DSG3 MUTATED 17 18 13
DSG3 WILD-TYPE 81 98 63
'DSG3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.86

Table S163.  Gene #17: 'DSG3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
DSG3 MUTATED 8 5 12 4
DSG3 WILD-TYPE 42 46 30 22
'DSG3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S164.  Gene #17: 'DSG3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
DSG3 MUTATED 5 10 4 10
DSG3 WILD-TYPE 22 48 31 39
'DSG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S165.  Gene #17: 'DSG3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
DSG3 MUTATED 18 13 17
DSG3 WILD-TYPE 85 73 84
'DSG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S166.  Gene #17: 'DSG3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
DSG3 MUTATED 15 13 12 8
DSG3 WILD-TYPE 68 68 66 40
'DSG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S167.  Gene #17: 'DSG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
DSG3 MUTATED 10 12 19 2 4
DSG3 WILD-TYPE 51 60 72 14 36
'DSG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S168.  Gene #17: 'DSG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
DSG3 MUTATED 15 13 15 4
DSG3 WILD-TYPE 84 58 59 32
'DSG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0826 (Fisher's exact test), Q value = 0.84

Table S169.  Gene #17: 'DSG3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
DSG3 MUTATED 17 9 19
DSG3 WILD-TYPE 58 80 86
'DSG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S170.  Gene #17: 'DSG3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
DSG3 MUTATED 23 9 10 3
DSG3 WILD-TYPE 101 47 51 25
'MLL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S171.  Gene #18: 'MLL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MLL MUTATED 11 14 15
MLL WILD-TYPE 65 95 90
'MLL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S172.  Gene #18: 'MLL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MLL MUTATED 16 15 9
MLL WILD-TYPE 82 101 67
'MLL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.95

Table S173.  Gene #18: 'MLL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
MLL MUTATED 4 9 7 6
MLL WILD-TYPE 46 42 35 20
'MLL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S174.  Gene #18: 'MLL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MLL MUTATED 3 13 4 6
MLL WILD-TYPE 24 45 31 43
'MLL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.92

Table S175.  Gene #18: 'MLL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MLL MUTATED 10 16 14
MLL WILD-TYPE 93 70 87
'MLL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S176.  Gene #18: 'MLL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MLL MUTATED 10 14 9 7
MLL WILD-TYPE 73 67 69 41
'MLL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S177.  Gene #18: 'MLL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
MLL MUTATED 5 12 14 1 7
MLL WILD-TYPE 56 60 77 15 33
'MLL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S178.  Gene #18: 'MLL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MLL MUTATED 16 10 8 5
MLL WILD-TYPE 83 61 66 31
'MLL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S179.  Gene #18: 'MLL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
MLL MUTATED 14 10 14
MLL WILD-TYPE 61 79 91
'MLL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S180.  Gene #18: 'MLL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
MLL MUTATED 19 8 8 3
MLL WILD-TYPE 105 48 53 25
'DDX3X MUTATION STATUS' versus 'CN_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.92

Table S181.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
DDX3X MUTATED 2 9 9
DDX3X WILD-TYPE 74 100 96
'DDX3X MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S182.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
DDX3X MUTATED 7 8 5
DDX3X WILD-TYPE 91 108 71
'DDX3X MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S183.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
DDX3X MUTATED 5 3 5 2
DDX3X WILD-TYPE 45 48 37 24
'DDX3X MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.9

Table S184.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
DDX3X MUTATED 5 4 1 5
DDX3X WILD-TYPE 22 54 34 44
'DDX3X MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S185.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
DDX3X MUTATED 6 8 6
DDX3X WILD-TYPE 97 78 95
'DDX3X MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S186.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
DDX3X MUTATED 8 5 3 4
DDX3X WILD-TYPE 75 76 75 44
'DDX3X MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S187.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
DDX3X MUTATED 4 6 6 0 4
DDX3X WILD-TYPE 57 66 85 16 36
'DDX3X MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S188.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
DDX3X MUTATED 7 3 6 4
DDX3X WILD-TYPE 92 68 68 32
'DDX3X MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S189.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
DDX3X MUTATED 4 6 9
DDX3X WILD-TYPE 71 83 96
'DDX3X MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.92

Table S190.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
DDX3X MUTATED 10 6 1 2
DDX3X WILD-TYPE 114 50 60 26
'HSD11B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S191.  Gene #20: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
HSD11B1 MUTATED 4 7 3
HSD11B1 WILD-TYPE 72 102 102
'HSD11B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.92

Table S192.  Gene #20: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
HSD11B1 MUTATED 5 8 1
HSD11B1 WILD-TYPE 93 108 75
'HSD11B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S193.  Gene #20: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
HSD11B1 MUTATED 4 1 1 0
HSD11B1 WILD-TYPE 46 50 41 26
'HSD11B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.88

Table S194.  Gene #20: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
HSD11B1 MUTATED 3 1 1 1
HSD11B1 WILD-TYPE 24 57 34 48
'HSD11B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.92

Table S195.  Gene #20: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
HSD11B1 MUTATED 6 6 2
HSD11B1 WILD-TYPE 97 80 99
'HSD11B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S196.  Gene #20: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
HSD11B1 MUTATED 3 6 2 3
HSD11B1 WILD-TYPE 80 75 76 45
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S197.  Gene #20: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
HSD11B1 MUTATED 3 2 4 1 4
HSD11B1 WILD-TYPE 58 70 87 15 36
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S198.  Gene #20: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
HSD11B1 MUTATED 5 4 3 2
HSD11B1 WILD-TYPE 94 67 71 34
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S199.  Gene #20: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
HSD11B1 MUTATED 4 3 5
HSD11B1 WILD-TYPE 71 86 100
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S200.  Gene #20: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
HSD11B1 MUTATED 6 2 2 2
HSD11B1 WILD-TYPE 118 54 59 26
'ALPK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S201.  Gene #21: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ALPK2 MUTATED 10 22 15
ALPK2 WILD-TYPE 66 87 90
'ALPK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S202.  Gene #21: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ALPK2 MUTATED 19 19 9
ALPK2 WILD-TYPE 79 97 67
'ALPK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.95

Table S203.  Gene #21: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
ALPK2 MUTATED 13 8 5 3
ALPK2 WILD-TYPE 37 43 37 23
'ALPK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S204.  Gene #21: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ALPK2 MUTATED 5 10 5 9
ALPK2 WILD-TYPE 22 48 30 40
'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S205.  Gene #21: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ALPK2 MUTATED 15 18 14
ALPK2 WILD-TYPE 88 68 87
'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.988 (Fisher's exact test), Q value = 1

Table S206.  Gene #21: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ALPK2 MUTATED 13 14 12 8
ALPK2 WILD-TYPE 70 67 66 40
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S207.  Gene #21: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
ALPK2 MUTATED 12 11 15 0 7
ALPK2 WILD-TYPE 49 61 76 16 33
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S208.  Gene #21: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ALPK2 MUTATED 18 11 9 7
ALPK2 WILD-TYPE 81 60 65 29
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S209.  Gene #21: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
ALPK2 MUTATED 12 13 19
ALPK2 WILD-TYPE 63 76 86
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S210.  Gene #21: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
ALPK2 MUTATED 18 12 9 5
ALPK2 WILD-TYPE 106 44 52 23
'ATP5F1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S211.  Gene #22: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ATP5F1 MUTATED 2 3 1
ATP5F1 WILD-TYPE 74 106 104
'ATP5F1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S212.  Gene #22: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ATP5F1 MUTATED 3 3 0
ATP5F1 WILD-TYPE 95 113 76
'ATP5F1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.9

Table S213.  Gene #22: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
ATP5F1 MUTATED 1 0 3 1
ATP5F1 WILD-TYPE 49 51 39 25
'ATP5F1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S214.  Gene #22: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ATP5F1 MUTATED 1 2 0 2
ATP5F1 WILD-TYPE 26 56 35 47
'ATP5F1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S215.  Gene #22: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ATP5F1 MUTATED 2 3 1
ATP5F1 WILD-TYPE 101 83 100
'ATP5F1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S216.  Gene #22: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ATP5F1 MUTATED 2 1 1 2
ATP5F1 WILD-TYPE 81 80 77 46
'ATP5F1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S217.  Gene #22: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
ATP5F1 MUTATED 2 2 2 0 0
ATP5F1 WILD-TYPE 59 70 89 16 40
'ATP5F1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S218.  Gene #22: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ATP5F1 MUTATED 3 2 1 0
ATP5F1 WILD-TYPE 96 69 73 36
'ATP5F1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.86

Table S219.  Gene #22: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
ATP5F1 MUTATED 4 1 1
ATP5F1 WILD-TYPE 71 88 104
'ATP5F1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S220.  Gene #22: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
ATP5F1 MUTATED 4 1 1 0
ATP5F1 WILD-TYPE 120 55 60 28
'RPTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S221.  Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
RPTN MUTATED 9 15 18
RPTN WILD-TYPE 67 94 87
'RPTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00764 (Fisher's exact test), Q value = 0.44

Table S222.  Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
RPTN MUTATED 21 17 4
RPTN WILD-TYPE 77 99 72

Figure S15.  Get High-res Image Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RPTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.95

Table S223.  Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
RPTN MUTATED 7 6 10 2
RPTN WILD-TYPE 43 45 32 24
'RPTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S224.  Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
RPTN MUTATED 3 7 7 8
RPTN WILD-TYPE 24 51 28 41
'RPTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.95

Table S225.  Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
RPTN MUTATED 12 17 13
RPTN WILD-TYPE 91 69 88
'RPTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S226.  Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
RPTN MUTATED 12 12 10 8
RPTN WILD-TYPE 71 69 68 40
'RPTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S227.  Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
RPTN MUTATED 7 11 13 3 5
RPTN WILD-TYPE 54 61 78 13 35
'RPTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S228.  Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
RPTN MUTATED 16 12 8 3
RPTN WILD-TYPE 83 59 66 33
'RPTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S229.  Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
RPTN MUTATED 13 10 16
RPTN WILD-TYPE 62 79 89
'RPTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S230.  Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
RPTN MUTATED 19 8 10 2
RPTN WILD-TYPE 105 48 51 26
'KRTAP5-10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.96

Table S231.  Gene #24: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
KRTAP5-10 MUTATED 2 2 6
KRTAP5-10 WILD-TYPE 74 107 99
'KRTAP5-10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S232.  Gene #24: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
KRTAP5-10 MUTATED 3 3 4
KRTAP5-10 WILD-TYPE 95 113 72
'KRTAP5-10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S233.  Gene #24: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
KRTAP5-10 MUTATED 3 1 1 0
KRTAP5-10 WILD-TYPE 47 50 41 26
'KRTAP5-10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.9

Table S234.  Gene #24: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
KRTAP5-10 MUTATED 0 4 1 0
KRTAP5-10 WILD-TYPE 27 54 34 49
'KRTAP5-10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S235.  Gene #24: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
KRTAP5-10 MUTATED 2 4 4
KRTAP5-10 WILD-TYPE 101 82 97
'KRTAP5-10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S236.  Gene #24: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
KRTAP5-10 MUTATED 3 3 4 0
KRTAP5-10 WILD-TYPE 80 78 74 48
'KRTAP5-10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S237.  Gene #24: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
KRTAP5-10 MUTATED 3 2 4 1 0
KRTAP5-10 WILD-TYPE 58 70 87 15 40
'KRTAP5-10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0526 (Fisher's exact test), Q value = 0.79

Table S238.  Gene #24: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
KRTAP5-10 MUTATED 5 5 0 0
KRTAP5-10 WILD-TYPE 94 66 74 36
'KRTAP5-10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S239.  Gene #24: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
KRTAP5-10 MUTATED 4 2 4
KRTAP5-10 WILD-TYPE 71 87 101
'KRTAP5-10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S240.  Gene #24: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
KRTAP5-10 MUTATED 5 1 4 0
KRTAP5-10 WILD-TYPE 119 55 57 28
'GML MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0248 (Fisher's exact test), Q value = 0.73

Table S241.  Gene #25: 'GML MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
GML MUTATED 7 2 2
GML WILD-TYPE 69 107 103

Figure S16.  Get High-res Image Gene #25: 'GML MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GML MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S242.  Gene #25: 'GML MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
GML MUTATED 3 4 4
GML WILD-TYPE 95 112 72
'GML MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S243.  Gene #25: 'GML MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
GML MUTATED 1 3 1 1
GML WILD-TYPE 49 48 41 25
'GML MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.92

Table S244.  Gene #25: 'GML MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
GML MUTATED 0 2 0 4
GML WILD-TYPE 27 56 35 45
'GML MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S245.  Gene #25: 'GML MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
GML MUTATED 5 2 4
GML WILD-TYPE 98 84 97
'GML MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S246.  Gene #25: 'GML MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
GML MUTATED 4 2 2 3
GML WILD-TYPE 79 79 76 45
'GML MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S247.  Gene #25: 'GML MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
GML MUTATED 3 2 6 0 0
GML WILD-TYPE 58 70 85 16 40
'GML MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S248.  Gene #25: 'GML MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
GML MUTATED 4 3 4 0
GML WILD-TYPE 95 68 70 36
'GML MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S249.  Gene #25: 'GML MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
GML MUTATED 5 2 4
GML WILD-TYPE 70 87 101
'GML MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S250.  Gene #25: 'GML MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
GML MUTATED 7 1 3 0
GML WILD-TYPE 117 55 58 28
'MAP2K1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.92

Table S251.  Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MAP2K1 MUTATED 2 9 4
MAP2K1 WILD-TYPE 74 100 101
'MAP2K1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00468 (Fisher's exact test), Q value = 0.38

Table S252.  Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MAP2K1 MUTATED 1 12 2
MAP2K1 WILD-TYPE 97 104 74

Figure S17.  Get High-res Image Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAP2K1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.93

Table S253.  Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
MAP2K1 MUTATED 6 2 1 1
MAP2K1 WILD-TYPE 44 49 41 25
'MAP2K1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0295 (Fisher's exact test), Q value = 0.75

Table S254.  Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MAP2K1 MUTATED 5 1 2 2
MAP2K1 WILD-TYPE 22 57 33 47

Figure S18.  Get High-res Image Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.86

Table S255.  Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MAP2K1 MUTATED 2 5 8
MAP2K1 WILD-TYPE 101 81 93
'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0887 (Fisher's exact test), Q value = 0.84

Table S256.  Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MAP2K1 MUTATED 2 2 8 3
MAP2K1 WILD-TYPE 81 79 70 45
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S257.  Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
MAP2K1 MUTATED 2 6 4 1 2
MAP2K1 WILD-TYPE 59 66 87 15 38
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S258.  Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MAP2K1 MUTATED 4 6 3 2
MAP2K1 WILD-TYPE 95 65 71 34
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0977 (Fisher's exact test), Q value = 0.84

Table S259.  Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
MAP2K1 MUTATED 2 9 4
MAP2K1 WILD-TYPE 73 80 101
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S260.  Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
MAP2K1 MUTATED 4 4 5 2
MAP2K1 WILD-TYPE 120 52 56 26
'IDH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S261.  Gene #27: 'IDH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
IDH1 MUTATED 4 7 4
IDH1 WILD-TYPE 72 102 101
'IDH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.86

Table S262.  Gene #27: 'IDH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
IDH1 MUTATED 9 4 2
IDH1 WILD-TYPE 89 112 74
'IDH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S263.  Gene #27: 'IDH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
IDH1 MUTATED 1 4 2 1
IDH1 WILD-TYPE 49 47 40 25
'IDH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.95

Table S264.  Gene #27: 'IDH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
IDH1 MUTATED 0 5 2 1
IDH1 WILD-TYPE 27 53 33 48
'IDH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S265.  Gene #27: 'IDH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
IDH1 MUTATED 7 5 3
IDH1 WILD-TYPE 96 81 98
'IDH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S266.  Gene #27: 'IDH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
IDH1 MUTATED 5 3 3 4
IDH1 WILD-TYPE 78 78 75 44
'IDH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0357 (Fisher's exact test), Q value = 0.75

Table S267.  Gene #27: 'IDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
IDH1 MUTATED 0 2 9 0 3
IDH1 WILD-TYPE 61 70 82 16 37

Figure S19.  Get High-res Image Gene #27: 'IDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IDH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S268.  Gene #27: 'IDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
IDH1 MUTATED 5 2 4 3
IDH1 WILD-TYPE 94 69 70 33
'IDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.86

Table S269.  Gene #27: 'IDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
IDH1 MUTATED 3 2 9
IDH1 WILD-TYPE 72 87 96
'IDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0606 (Fisher's exact test), Q value = 0.82

Table S270.  Gene #27: 'IDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
IDH1 MUTATED 9 0 2 3
IDH1 WILD-TYPE 115 56 59 25
'KEL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.6

Table S271.  Gene #28: 'KEL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
KEL MUTATED 10 20 6
KEL WILD-TYPE 66 89 99

Figure S20.  Get High-res Image Gene #28: 'KEL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KEL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.96

Table S272.  Gene #28: 'KEL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
KEL MUTATED 12 18 6
KEL WILD-TYPE 86 98 70
'KEL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S273.  Gene #28: 'KEL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
KEL MUTATED 6 6 8 3
KEL WILD-TYPE 44 45 34 23
'KEL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S274.  Gene #28: 'KEL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
KEL MUTATED 3 6 5 9
KEL WILD-TYPE 24 52 30 40
'KEL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00286 (Fisher's exact test), Q value = 0.36

Table S275.  Gene #28: 'KEL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
KEL MUTATED 17 15 4
KEL WILD-TYPE 86 71 97

Figure S21.  Get High-res Image Gene #28: 'KEL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KEL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0732 (Fisher's exact test), Q value = 0.84

Table S276.  Gene #28: 'KEL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
KEL MUTATED 13 10 4 9
KEL WILD-TYPE 70 71 74 39
'KEL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.86

Table S277.  Gene #28: 'KEL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
KEL MUTATED 4 7 15 0 7
KEL WILD-TYPE 57 65 76 16 33
'KEL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S278.  Gene #28: 'KEL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
KEL MUTATED 9 7 11 6
KEL WILD-TYPE 90 64 63 30
'KEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.93

Table S279.  Gene #28: 'KEL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
KEL MUTATED 13 8 12
KEL WILD-TYPE 62 81 93
'KEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.94

Table S280.  Gene #28: 'KEL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
KEL MUTATED 20 4 5 4
KEL WILD-TYPE 104 52 56 24
'RQCD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.92

Table S281.  Gene #29: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
RQCD1 MUTATED 4 1 4
RQCD1 WILD-TYPE 72 108 101
'RQCD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.9

Table S282.  Gene #29: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
RQCD1 MUTATED 5 1 3
RQCD1 WILD-TYPE 93 115 73
'RQCD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.93

Table S283.  Gene #29: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
RQCD1 MUTATED 0 2 1 2
RQCD1 WILD-TYPE 50 49 41 24
'RQCD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S284.  Gene #29: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
RQCD1 MUTATED 0 2 1 2
RQCD1 WILD-TYPE 27 56 34 47
'RQCD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S285.  Gene #29: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
RQCD1 MUTATED 5 2 2
RQCD1 WILD-TYPE 98 84 99
'RQCD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S286.  Gene #29: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
RQCD1 MUTATED 3 3 2 1
RQCD1 WILD-TYPE 80 78 76 47
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S287.  Gene #29: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
RQCD1 MUTATED 3 1 4 0 1
RQCD1 WILD-TYPE 58 71 87 16 39
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.86

Table S288.  Gene #29: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
RQCD1 MUTATED 6 2 0 1
RQCD1 WILD-TYPE 93 69 74 35
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0401 (Fisher's exact test), Q value = 0.75

Table S289.  Gene #29: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
RQCD1 MUTATED 0 2 7
RQCD1 WILD-TYPE 75 87 98

Figure S22.  Get High-res Image Gene #29: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RQCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S290.  Gene #29: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
RQCD1 MUTATED 5 2 1 1
RQCD1 WILD-TYPE 119 54 60 27
'NGF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.84

Table S291.  Gene #30: 'NGF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
NGF MUTATED 5 3 1
NGF WILD-TYPE 71 106 104
'NGF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S292.  Gene #30: 'NGF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
NGF MUTATED 4 3 2
NGF WILD-TYPE 94 113 74
'NGF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0979 (Fisher's exact test), Q value = 0.84

Table S293.  Gene #30: 'NGF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
NGF MUTATED 4 1 0 0
NGF WILD-TYPE 46 50 42 26
'NGF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S294.  Gene #30: 'NGF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
NGF MUTATED 1 2 1 1
NGF WILD-TYPE 26 56 34 48
'NGF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S295.  Gene #30: 'NGF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
NGF MUTATED 2 3 4
NGF WILD-TYPE 101 83 97
'NGF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S296.  Gene #30: 'NGF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
NGF MUTATED 3 3 3 0
NGF WILD-TYPE 80 78 75 48
'NGF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S297.  Gene #30: 'NGF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
NGF MUTATED 1 3 2 1 1
NGF WILD-TYPE 60 69 89 15 39
'NGF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S298.  Gene #30: 'NGF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
NGF MUTATED 3 1 3 1
NGF WILD-TYPE 96 70 71 35
'NGF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.86

Table S299.  Gene #30: 'NGF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
NGF MUTATED 0 5 3
NGF WILD-TYPE 75 84 102
'NGF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S300.  Gene #30: 'NGF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
NGF MUTATED 5 1 1 1
NGF WILD-TYPE 119 55 60 27
'DMC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S301.  Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
DMC1 MUTATED 4 5 2
DMC1 WILD-TYPE 72 104 103
'DMC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S302.  Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
DMC1 MUTATED 4 6 1
DMC1 WILD-TYPE 94 110 75
'DMC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.75

Table S303.  Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
DMC1 MUTATED 6 1 0 1
DMC1 WILD-TYPE 44 50 42 25

Figure S23.  Get High-res Image Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DMC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.96

Table S304.  Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
DMC1 MUTATED 3 2 2 1
DMC1 WILD-TYPE 24 56 33 48
'DMC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.6

Table S305.  Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
DMC1 MUTATED 0 4 7
DMC1 WILD-TYPE 103 82 94

Figure S24.  Get High-res Image Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DMC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.95

Table S306.  Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
DMC1 MUTATED 2 5 4 0
DMC1 WILD-TYPE 81 76 74 48
'DMC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0215 (Fisher's exact test), Q value = 0.72

Table S307.  Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
DMC1 MUTATED 1 8 1 0 1
DMC1 WILD-TYPE 60 64 90 16 39

Figure S25.  Get High-res Image Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DMC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S308.  Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
DMC1 MUTATED 3 5 2 1
DMC1 WILD-TYPE 96 66 72 35
'DMC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00781 (Fisher's exact test), Q value = 0.44

Table S309.  Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
DMC1 MUTATED 1 8 1
DMC1 WILD-TYPE 74 81 104

Figure S26.  Get High-res Image Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DMC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00283 (Fisher's exact test), Q value = 0.36

Table S310.  Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
DMC1 MUTATED 0 5 4 1
DMC1 WILD-TYPE 124 51 57 27

Figure S27.  Get High-res Image Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TRERF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0324 (Fisher's exact test), Q value = 0.75

Table S311.  Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
TRERF1 MUTATED 7 15 4
TRERF1 WILD-TYPE 69 94 101

Figure S28.  Get High-res Image Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TRERF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S312.  Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
TRERF1 MUTATED 10 12 4
TRERF1 WILD-TYPE 88 104 72
'TRERF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.84

Table S313.  Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
TRERF1 MUTATED 9 6 4 0
TRERF1 WILD-TYPE 41 45 38 26
'TRERF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S314.  Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
TRERF1 MUTATED 3 8 4 4
TRERF1 WILD-TYPE 24 50 31 45
'TRERF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.87

Table S315.  Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
TRERF1 MUTATED 8 12 6
TRERF1 WILD-TYPE 95 74 95
'TRERF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0965 (Fisher's exact test), Q value = 0.84

Table S316.  Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
TRERF1 MUTATED 6 12 3 5
TRERF1 WILD-TYPE 77 69 75 43
'TRERF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S317.  Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
TRERF1 MUTATED 7 4 11 0 3
TRERF1 WILD-TYPE 54 68 80 16 37
'TRERF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S318.  Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
TRERF1 MUTATED 11 7 5 2
TRERF1 WILD-TYPE 88 64 69 34
'TRERF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0519 (Fisher's exact test), Q value = 0.79

Table S319.  Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
TRERF1 MUTATED 10 3 10
TRERF1 WILD-TYPE 65 86 95
'TRERF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S320.  Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
TRERF1 MUTATED 13 4 5 1
TRERF1 WILD-TYPE 111 52 56 27
'CYP3A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S321.  Gene #33: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CYP3A5 MUTATED 4 4 5
CYP3A5 WILD-TYPE 72 105 100
'CYP3A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.95

Table S322.  Gene #33: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CYP3A5 MUTATED 5 7 1
CYP3A5 WILD-TYPE 93 109 75
'CYP3A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.98

Table S323.  Gene #33: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
CYP3A5 MUTATED 3 0 2 1
CYP3A5 WILD-TYPE 47 51 40 25
'CYP3A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.86

Table S324.  Gene #33: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CYP3A5 MUTATED 2 0 1 3
CYP3A5 WILD-TYPE 25 58 34 46
'CYP3A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S325.  Gene #33: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CYP3A5 MUTATED 7 3 3
CYP3A5 WILD-TYPE 96 83 98
'CYP3A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S326.  Gene #33: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CYP3A5 MUTATED 6 3 3 1
CYP3A5 WILD-TYPE 77 78 75 47
'CYP3A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S327.  Gene #33: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
CYP3A5 MUTATED 5 3 3 0 1
CYP3A5 WILD-TYPE 56 69 88 16 39
'CYP3A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S328.  Gene #33: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
CYP3A5 MUTATED 5 1 5 1
CYP3A5 WILD-TYPE 94 70 69 35
'CYP3A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S329.  Gene #33: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
CYP3A5 MUTATED 3 3 5
CYP3A5 WILD-TYPE 72 86 100
'CYP3A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S330.  Gene #33: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
CYP3A5 MUTATED 6 3 2 0
CYP3A5 WILD-TYPE 118 53 59 28
'BRAF MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.012

Table S331.  Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
BRAF MUTATED 23 51 71
BRAF WILD-TYPE 53 58 34

Figure S29.  Get High-res Image Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BRAF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 0.6

Table S332.  Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
BRAF MUTATED 47 69 29
BRAF WILD-TYPE 51 47 47

Figure S30.  Get High-res Image Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BRAF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S333.  Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
BRAF MUTATED 27 21 23 14
BRAF WILD-TYPE 23 30 19 12
'BRAF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S334.  Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
BRAF MUTATED 13 25 20 27
BRAF WILD-TYPE 14 33 15 22
'BRAF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00535 (Fisher's exact test), Q value = 0.39

Table S335.  Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
BRAF MUTATED 40 43 62
BRAF WILD-TYPE 63 43 39

Figure S31.  Get High-res Image Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BRAF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.031

Table S336.  Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
BRAF MUTATED 26 43 53 23
BRAF WILD-TYPE 57 38 25 25

Figure S32.  Get High-res Image Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BRAF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0044 (Fisher's exact test), Q value = 0.38

Table S337.  Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
BRAF MUTATED 21 41 40 12 25
BRAF WILD-TYPE 40 31 51 4 15

Figure S33.  Get High-res Image Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BRAF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.92

Table S338.  Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
BRAF MUTATED 49 36 31 23
BRAF WILD-TYPE 50 35 43 13
'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.031

Table S339.  Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
BRAF MUTATED 41 57 36
BRAF WILD-TYPE 34 32 69

Figure S34.  Get High-res Image Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0702 (Fisher's exact test), Q value = 0.84

Table S340.  Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
BRAF MUTATED 51 31 36 16
BRAF WILD-TYPE 73 25 25 12
'NBPF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S341.  Gene #35: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
NBPF1 MUTATED 9 9 8
NBPF1 WILD-TYPE 67 100 97
'NBPF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.92

Table S342.  Gene #35: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
NBPF1 MUTATED 13 7 6
NBPF1 WILD-TYPE 85 109 70
'NBPF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 0.84

Table S343.  Gene #35: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
NBPF1 MUTATED 6 3 9 1
NBPF1 WILD-TYPE 44 48 33 25
'NBPF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S344.  Gene #35: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
NBPF1 MUTATED 3 9 3 4
NBPF1 WILD-TYPE 24 49 32 45
'NBPF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.93

Table S345.  Gene #35: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
NBPF1 MUTATED 13 7 6
NBPF1 WILD-TYPE 90 79 95
'NBPF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S346.  Gene #35: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
NBPF1 MUTATED 11 7 5 3
NBPF1 WILD-TYPE 72 74 73 45
'NBPF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S347.  Gene #35: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
NBPF1 MUTATED 8 4 9 0 4
NBPF1 WILD-TYPE 53 68 82 16 36
'NBPF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S348.  Gene #35: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
NBPF1 MUTATED 7 7 8 3
NBPF1 WILD-TYPE 92 64 66 33
'NBPF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.86

Table S349.  Gene #35: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
NBPF1 MUTATED 10 4 11
NBPF1 WILD-TYPE 65 85 94
'NBPF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S350.  Gene #35: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
NBPF1 MUTATED 13 5 4 3
NBPF1 WILD-TYPE 111 51 57 25
'ZNF780B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 0.84

Table S351.  Gene #36: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ZNF780B MUTATED 2 7 1
ZNF780B WILD-TYPE 74 102 104
'ZNF780B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S352.  Gene #36: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ZNF780B MUTATED 4 5 1
ZNF780B WILD-TYPE 94 111 75
'ZNF780B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S353.  Gene #36: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
ZNF780B MUTATED 2 4 1 0
ZNF780B WILD-TYPE 48 47 41 26
'ZNF780B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S354.  Gene #36: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ZNF780B MUTATED 1 4 0 2
ZNF780B WILD-TYPE 26 54 35 47
'ZNF780B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S355.  Gene #36: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ZNF780B MUTATED 4 4 2
ZNF780B WILD-TYPE 99 82 99
'ZNF780B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S356.  Gene #36: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ZNF780B MUTATED 3 4 1 2
ZNF780B WILD-TYPE 80 77 77 46
'ZNF780B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S357.  Gene #36: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
ZNF780B MUTATED 3 3 1 0 2
ZNF780B WILD-TYPE 58 69 90 16 38
'ZNF780B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S358.  Gene #36: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ZNF780B MUTATED 4 3 1 1
ZNF780B WILD-TYPE 95 68 73 35
'ZNF780B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S359.  Gene #36: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
ZNF780B MUTATED 3 2 4
ZNF780B WILD-TYPE 72 87 101
'ZNF780B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S360.  Gene #36: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
ZNF780B MUTATED 4 3 1 1
ZNF780B WILD-TYPE 120 53 60 27
'STK19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S361.  Gene #37: 'STK19 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
STK19 MUTATED 5 5 4
STK19 WILD-TYPE 71 104 101
'STK19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0394 (Fisher's exact test), Q value = 0.75

Table S362.  Gene #37: 'STK19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
STK19 MUTATED 6 8 0
STK19 WILD-TYPE 92 108 76

Figure S35.  Get High-res Image Gene #37: 'STK19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'STK19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.94

Table S363.  Gene #37: 'STK19 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
STK19 MUTATED 2 0 2 2
STK19 WILD-TYPE 48 51 40 24
'STK19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S364.  Gene #37: 'STK19 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
STK19 MUTATED 0 3 1 2
STK19 WILD-TYPE 27 55 34 47
'STK19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S365.  Gene #37: 'STK19 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
STK19 MUTATED 5 5 4
STK19 WILD-TYPE 98 81 97
'STK19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S366.  Gene #37: 'STK19 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
STK19 MUTATED 3 6 2 3
STK19 WILD-TYPE 80 75 76 45
'STK19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.95

Table S367.  Gene #37: 'STK19 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
STK19 MUTATED 4 2 7 0 0
STK19 WILD-TYPE 57 70 84 16 40
'STK19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.92

Table S368.  Gene #37: 'STK19 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
STK19 MUTATED 8 3 2 0
STK19 WILD-TYPE 91 68 72 36
'STK19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S369.  Gene #37: 'STK19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
STK19 MUTATED 4 3 6
STK19 WILD-TYPE 71 86 99
'STK19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S370.  Gene #37: 'STK19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
STK19 MUTATED 9 2 2 0
STK19 WILD-TYPE 115 54 59 28
'KYNU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S371.  Gene #38: 'KYNU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
KYNU MUTATED 4 5 7
KYNU WILD-TYPE 72 104 98
'KYNU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S372.  Gene #38: 'KYNU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
KYNU MUTATED 6 6 4
KYNU WILD-TYPE 92 110 72
'KYNU MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S373.  Gene #38: 'KYNU MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
KYNU MUTATED 4 1 2 1
KYNU WILD-TYPE 46 50 40 25
'KYNU MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S374.  Gene #38: 'KYNU MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
KYNU MUTATED 1 4 1 2
KYNU WILD-TYPE 26 54 34 47
'KYNU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S375.  Gene #38: 'KYNU MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
KYNU MUTATED 5 3 8
KYNU WILD-TYPE 98 83 93
'KYNU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.87

Table S376.  Gene #38: 'KYNU MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
KYNU MUTATED 4 5 7 0
KYNU WILD-TYPE 79 76 71 48
'KYNU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S377.  Gene #38: 'KYNU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
KYNU MUTATED 4 5 3 1 2
KYNU WILD-TYPE 57 67 88 15 38
'KYNU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S378.  Gene #38: 'KYNU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
KYNU MUTATED 5 5 3 2
KYNU WILD-TYPE 94 66 71 34
'KYNU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S379.  Gene #38: 'KYNU MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
KYNU MUTATED 5 6 4
KYNU WILD-TYPE 70 83 101
'KYNU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.94

Table S380.  Gene #38: 'KYNU MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
KYNU MUTATED 6 1 6 2
KYNU WILD-TYPE 118 55 55 26
'ANO4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S381.  Gene #39: 'ANO4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ANO4 MUTATED 14 19 13
ANO4 WILD-TYPE 62 90 92
'ANO4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S382.  Gene #39: 'ANO4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ANO4 MUTATED 19 18 9
ANO4 WILD-TYPE 79 98 67
'ANO4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.86

Table S383.  Gene #39: 'ANO4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
ANO4 MUTATED 11 5 11 3
ANO4 WILD-TYPE 39 46 31 23
'ANO4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S384.  Gene #39: 'ANO4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ANO4 MUTATED 4 9 8 9
ANO4 WILD-TYPE 23 49 27 40
'ANO4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S385.  Gene #39: 'ANO4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ANO4 MUTATED 16 17 13
ANO4 WILD-TYPE 87 69 88
'ANO4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S386.  Gene #39: 'ANO4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ANO4 MUTATED 13 13 14 6
ANO4 WILD-TYPE 70 68 64 42
'ANO4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S387.  Gene #39: 'ANO4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
ANO4 MUTATED 11 12 13 3 6
ANO4 WILD-TYPE 50 60 78 13 34
'ANO4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.99 (Fisher's exact test), Q value = 1

Table S388.  Gene #39: 'ANO4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ANO4 MUTATED 15 12 12 6
ANO4 WILD-TYPE 84 59 62 30
'ANO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S389.  Gene #39: 'ANO4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
ANO4 MUTATED 13 11 20
ANO4 WILD-TYPE 62 78 85
'ANO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S390.  Gene #39: 'ANO4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
ANO4 MUTATED 21 7 12 4
ANO4 WILD-TYPE 103 49 49 24
'SLC27A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S391.  Gene #40: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SLC27A5 MUTATED 4 4 2
SLC27A5 WILD-TYPE 72 105 103
'SLC27A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.92

Table S392.  Gene #40: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SLC27A5 MUTATED 6 2 2
SLC27A5 WILD-TYPE 92 114 74
'SLC27A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S393.  Gene #40: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
SLC27A5 MUTATED 0 2 2 0
SLC27A5 WILD-TYPE 50 49 40 26
'SLC27A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S394.  Gene #40: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SLC27A5 MUTATED 0 2 0 2
SLC27A5 WILD-TYPE 27 56 35 47
'SLC27A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S395.  Gene #40: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SLC27A5 MUTATED 5 2 3
SLC27A5 WILD-TYPE 98 84 98
'SLC27A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S396.  Gene #40: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SLC27A5 MUTATED 2 4 3 1
SLC27A5 WILD-TYPE 81 77 75 47
'SLC27A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0607 (Fisher's exact test), Q value = 0.82

Table S397.  Gene #40: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
SLC27A5 MUTATED 2 1 1 1 4
SLC27A5 WILD-TYPE 59 71 90 15 36
'SLC27A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S398.  Gene #40: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
SLC27A5 MUTATED 3 3 1 2
SLC27A5 WILD-TYPE 96 68 73 34
'SLC27A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.93

Table S399.  Gene #40: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
SLC27A5 MUTATED 2 1 6
SLC27A5 WILD-TYPE 73 88 99
'SLC27A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.95

Table S400.  Gene #40: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
SLC27A5 MUTATED 5 0 2 2
SLC27A5 WILD-TYPE 119 56 59 26
'POTEG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0329 (Fisher's exact test), Q value = 0.75

Table S401.  Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
POTEG MUTATED 13 8 6
POTEG WILD-TYPE 63 101 99

Figure S36.  Get High-res Image Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'POTEG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0411 (Fisher's exact test), Q value = 0.75

Table S402.  Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
POTEG MUTATED 15 6 6
POTEG WILD-TYPE 83 110 70

Figure S37.  Get High-res Image Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'POTEG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.92

Table S403.  Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
POTEG MUTATED 2 4 7 2
POTEG WILD-TYPE 48 47 35 24
'POTEG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S404.  Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
POTEG MUTATED 2 6 4 3
POTEG WILD-TYPE 25 52 31 46
'POTEG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.92

Table S405.  Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
POTEG MUTATED 12 4 11
POTEG WILD-TYPE 91 82 90
'POTEG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S406.  Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
POTEG MUTATED 11 7 7 2
POTEG WILD-TYPE 72 74 71 46
'POTEG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.87

Table S407.  Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
POTEG MUTATED 2 8 13 1 2
POTEG WILD-TYPE 59 64 78 15 38
'POTEG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S408.  Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
POTEG MUTATED 12 5 7 2
POTEG WILD-TYPE 87 66 67 34
'POTEG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S409.  Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
POTEG MUTATED 5 8 12
POTEG WILD-TYPE 70 81 93
'POTEG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S410.  Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
POTEG MUTATED 13 6 4 2
POTEG WILD-TYPE 111 50 57 26
'TPTE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S411.  Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
TPTE MUTATED 16 22 26
TPTE WILD-TYPE 60 87 79
'TPTE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 0.75

Table S412.  Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
TPTE MUTATED 28 17 19
TPTE WILD-TYPE 70 99 57

Figure S38.  Get High-res Image Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TPTE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.75

Table S413.  Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
TPTE MUTATED 8 13 15 2
TPTE WILD-TYPE 42 38 27 24

Figure S39.  Get High-res Image Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TPTE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S414.  Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
TPTE MUTATED 6 13 7 12
TPTE WILD-TYPE 21 45 28 37
'TPTE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.92

Table S415.  Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
TPTE MUTATED 17 21 26
TPTE WILD-TYPE 86 65 75
'TPTE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S416.  Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
TPTE MUTATED 17 18 20 9
TPTE WILD-TYPE 66 63 58 39
'TPTE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S417.  Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
TPTE MUTATED 12 13 21 5 9
TPTE WILD-TYPE 49 59 70 11 31
'TPTE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S418.  Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
TPTE MUTATED 21 17 15 7
TPTE WILD-TYPE 78 54 59 29
'TPTE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S419.  Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
TPTE MUTATED 16 17 26
TPTE WILD-TYPE 59 72 79
'TPTE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S420.  Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
TPTE MUTATED 32 8 12 7
TPTE WILD-TYPE 92 48 49 21
'USH2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.95

Table S421.  Gene #43: 'USH2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
USH2A MUTATED 27 37 27
USH2A WILD-TYPE 49 72 78
'USH2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S422.  Gene #43: 'USH2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
USH2A MUTATED 35 35 21
USH2A WILD-TYPE 63 81 55
'USH2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.86

Table S423.  Gene #43: 'USH2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
USH2A MUTATED 19 12 19 11
USH2A WILD-TYPE 31 39 23 15
'USH2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S424.  Gene #43: 'USH2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
USH2A MUTATED 10 20 11 20
USH2A WILD-TYPE 17 38 24 29
'USH2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.96

Table S425.  Gene #43: 'USH2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
USH2A MUTATED 35 30 26
USH2A WILD-TYPE 68 56 75
'USH2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S426.  Gene #43: 'USH2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
USH2A MUTATED 28 27 22 14
USH2A WILD-TYPE 55 54 56 34
'USH2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S427.  Gene #43: 'USH2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
USH2A MUTATED 20 19 29 4 16
USH2A WILD-TYPE 41 53 62 12 24
'USH2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.95

Table S428.  Gene #43: 'USH2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
USH2A MUTATED 26 20 28 14
USH2A WILD-TYPE 73 51 46 22
'USH2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.92

Table S429.  Gene #43: 'USH2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
USH2A MUTATED 27 22 36
USH2A WILD-TYPE 48 67 69
'USH2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.92

Table S430.  Gene #43: 'USH2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
USH2A MUTATED 45 12 18 10
USH2A WILD-TYPE 79 44 43 18
'XIRP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0832 (Fisher's exact test), Q value = 0.84

Table S431.  Gene #44: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
XIRP2 MUTATED 30 41 27
XIRP2 WILD-TYPE 46 68 78
'XIRP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.97

Table S432.  Gene #44: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
XIRP2 MUTATED 38 39 21
XIRP2 WILD-TYPE 60 77 55
'XIRP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.87

Table S433.  Gene #44: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
XIRP2 MUTATED 20 13 19 12
XIRP2 WILD-TYPE 30 38 23 14
'XIRP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S434.  Gene #44: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
XIRP2 MUTATED 10 20 12 22
XIRP2 WILD-TYPE 17 38 23 27
'XIRP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.93

Table S435.  Gene #44: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
XIRP2 MUTATED 41 28 29
XIRP2 WILD-TYPE 62 58 72
'XIRP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.86

Table S436.  Gene #44: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
XIRP2 MUTATED 31 21 24 22
XIRP2 WILD-TYPE 52 60 54 26
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.98

Table S437.  Gene #44: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
XIRP2 MUTATED 20 24 31 2 17
XIRP2 WILD-TYPE 41 48 60 14 23
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S438.  Gene #44: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
XIRP2 MUTATED 31 24 25 14
XIRP2 WILD-TYPE 68 47 49 22
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S439.  Gene #44: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
XIRP2 MUTATED 28 28 36
XIRP2 WILD-TYPE 47 61 69
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S440.  Gene #44: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
XIRP2 MUTATED 47 15 19 11
XIRP2 WILD-TYPE 77 41 42 17
'THSD7B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0909 (Fisher's exact test), Q value = 0.84

Table S441.  Gene #45: 'THSD7B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
THSD7B MUTATED 28 39 25
THSD7B WILD-TYPE 48 70 80
'THSD7B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.92

Table S442.  Gene #45: 'THSD7B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
THSD7B MUTATED 33 41 18
THSD7B WILD-TYPE 65 75 58
'THSD7B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S443.  Gene #45: 'THSD7B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
THSD7B MUTATED 21 14 15 8
THSD7B WILD-TYPE 29 37 27 18
'THSD7B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S444.  Gene #45: 'THSD7B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
THSD7B MUTATED 12 17 12 17
THSD7B WILD-TYPE 15 41 23 32
'THSD7B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S445.  Gene #45: 'THSD7B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
THSD7B MUTATED 32 31 29
THSD7B WILD-TYPE 71 55 72
'THSD7B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.86

Table S446.  Gene #45: 'THSD7B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
THSD7B MUTATED 20 31 22 19
THSD7B WILD-TYPE 63 50 56 29
'THSD7B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.86

Table S447.  Gene #45: 'THSD7B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
THSD7B MUTATED 15 30 30 2 12
THSD7B WILD-TYPE 46 42 61 14 28
'THSD7B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S448.  Gene #45: 'THSD7B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
THSD7B MUTATED 34 23 22 10
THSD7B WILD-TYPE 65 48 52 26
'THSD7B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.92

Table S449.  Gene #45: 'THSD7B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
THSD7B MUTATED 18 31 37
THSD7B WILD-TYPE 57 58 68
'THSD7B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S450.  Gene #45: 'THSD7B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
THSD7B MUTATED 44 15 19 8
THSD7B WILD-TYPE 80 41 42 20
'USP17L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S451.  Gene #46: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
USP17L2 MUTATED 3 10 9
USP17L2 WILD-TYPE 73 99 96
'USP17L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0338 (Fisher's exact test), Q value = 0.75

Table S452.  Gene #46: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
USP17L2 MUTATED 10 11 1
USP17L2 WILD-TYPE 88 105 75

Figure S40.  Get High-res Image Gene #46: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'USP17L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S453.  Gene #46: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
USP17L2 MUTATED 5 4 3 1
USP17L2 WILD-TYPE 45 47 39 25
'USP17L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S454.  Gene #46: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
USP17L2 MUTATED 2 6 3 2
USP17L2 WILD-TYPE 25 52 32 47
'USP17L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S455.  Gene #46: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
USP17L2 MUTATED 8 9 5
USP17L2 WILD-TYPE 95 77 96
'USP17L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S456.  Gene #46: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
USP17L2 MUTATED 8 5 4 5
USP17L2 WILD-TYPE 75 76 74 43
'USP17L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S457.  Gene #46: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
USP17L2 MUTATED 5 7 7 1 1
USP17L2 WILD-TYPE 56 65 84 15 39
'USP17L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.91

Table S458.  Gene #46: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
USP17L2 MUTATED 8 9 3 1
USP17L2 WILD-TYPE 91 62 71 35
'USP17L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S459.  Gene #46: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
USP17L2 MUTATED 7 5 9
USP17L2 WILD-TYPE 68 84 96
'USP17L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S460.  Gene #46: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
USP17L2 MUTATED 12 4 4 1
USP17L2 WILD-TYPE 112 52 57 27
'S100A8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S461.  Gene #47: 'S100A8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
S100A8 MUTATED 3 4 1
S100A8 WILD-TYPE 73 105 104
'S100A8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S462.  Gene #47: 'S100A8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
S100A8 MUTATED 3 4 1
S100A8 WILD-TYPE 95 112 75
'S100A8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.86

Table S463.  Gene #47: 'S100A8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
S100A8 MUTATED 3 0 3 0
S100A8 WILD-TYPE 47 51 39 26
'S100A8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0358 (Fisher's exact test), Q value = 0.75

Table S464.  Gene #47: 'S100A8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
S100A8 MUTATED 3 3 0 0
S100A8 WILD-TYPE 24 55 35 49

Figure S41.  Get High-res Image Gene #47: 'S100A8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'S100A8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S465.  Gene #47: 'S100A8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
S100A8 MUTATED 4 2 2
S100A8 WILD-TYPE 99 84 99
'S100A8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S466.  Gene #47: 'S100A8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
S100A8 MUTATED 3 1 2 2
S100A8 WILD-TYPE 80 80 76 46
'S100A8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S467.  Gene #47: 'S100A8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
S100A8 MUTATED 2 3 2 0 1
S100A8 WILD-TYPE 59 69 89 16 39
'S100A8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S468.  Gene #47: 'S100A8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
S100A8 MUTATED 3 3 1 1
S100A8 WILD-TYPE 96 68 73 35
'S100A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S469.  Gene #47: 'S100A8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
S100A8 MUTATED 2 3 1
S100A8 WILD-TYPE 73 86 104
'S100A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S470.  Gene #47: 'S100A8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
S100A8 MUTATED 2 1 2 1
S100A8 WILD-TYPE 122 55 59 27
'CTNNB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S471.  Gene #48: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CTNNB1 MUTATED 5 5 6
CTNNB1 WILD-TYPE 71 104 99
'CTNNB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S472.  Gene #48: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CTNNB1 MUTATED 7 5 4
CTNNB1 WILD-TYPE 91 111 72
'CTNNB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.87

Table S473.  Gene #48: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
CTNNB1 MUTATED 1 3 5 0
CTNNB1 WILD-TYPE 49 48 37 26
'CTNNB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S474.  Gene #48: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CTNNB1 MUTATED 2 2 3 2
CTNNB1 WILD-TYPE 25 56 32 47
'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.92

Table S475.  Gene #48: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CTNNB1 MUTATED 9 3 4
CTNNB1 WILD-TYPE 94 83 97
'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S476.  Gene #48: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CTNNB1 MUTATED 7 2 4 3
CTNNB1 WILD-TYPE 76 79 74 45
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.991 (Fisher's exact test), Q value = 1

Table S477.  Gene #48: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
CTNNB1 MUTATED 3 3 5 1 2
CTNNB1 WILD-TYPE 58 69 86 15 38
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S478.  Gene #48: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
CTNNB1 MUTATED 3 4 5 2
CTNNB1 WILD-TYPE 96 67 69 34
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S479.  Gene #48: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
CTNNB1 MUTATED 3 4 7
CTNNB1 WILD-TYPE 72 85 98
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S480.  Gene #48: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
CTNNB1 MUTATED 8 2 3 1
CTNNB1 WILD-TYPE 116 54 58 27
'USP9X MUTATION STATUS' versus 'CN_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S481.  Gene #49: 'USP9X MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
USP9X MUTATED 6 7 4
USP9X WILD-TYPE 70 102 101
'USP9X MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S482.  Gene #49: 'USP9X MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
USP9X MUTATED 7 5 5
USP9X WILD-TYPE 91 111 71
'USP9X MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S483.  Gene #49: 'USP9X MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
USP9X MUTATED 2 2 4 2
USP9X WILD-TYPE 48 49 38 24
'USP9X MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.089 (Fisher's exact test), Q value = 0.84

Table S484.  Gene #49: 'USP9X MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
USP9X MUTATED 0 5 0 5
USP9X WILD-TYPE 27 53 35 44
'USP9X MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S485.  Gene #49: 'USP9X MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
USP9X MUTATED 6 6 5
USP9X WILD-TYPE 97 80 96
'USP9X MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S486.  Gene #49: 'USP9X MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
USP9X MUTATED 6 4 5 2
USP9X WILD-TYPE 77 77 73 46
'USP9X MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S487.  Gene #49: 'USP9X MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
USP9X MUTATED 4 4 8 1 0
USP9X WILD-TYPE 57 68 83 15 40
'USP9X MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.95

Table S488.  Gene #49: 'USP9X MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
USP9X MUTATED 5 6 6 0
USP9X WILD-TYPE 94 65 68 36
'USP9X MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.86

Table S489.  Gene #49: 'USP9X MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
USP9X MUTATED 7 2 8
USP9X WILD-TYPE 68 87 97
'USP9X MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S490.  Gene #49: 'USP9X MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
USP9X MUTATED 8 4 5 0
USP9X WILD-TYPE 116 52 56 28
'C10ORF28 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S491.  Gene #50: 'C10ORF28 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
C10ORF28 MUTATED 3 2 2
C10ORF28 WILD-TYPE 73 107 103
'C10ORF28 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S492.  Gene #50: 'C10ORF28 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
C10ORF28 MUTATED 2 4 1
C10ORF28 WILD-TYPE 96 112 75
'C10ORF28 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S493.  Gene #50: 'C10ORF28 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
C10ORF28 MUTATED 1 0 2 1
C10ORF28 WILD-TYPE 49 51 40 25
'C10ORF28 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.95

Table S494.  Gene #50: 'C10ORF28 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
C10ORF28 MUTATED 1 1 2 0
C10ORF28 WILD-TYPE 26 57 33 49
'C10ORF28 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S495.  Gene #50: 'C10ORF28 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
C10ORF28 MUTATED 3 3 1
C10ORF28 WILD-TYPE 100 83 100
'C10ORF28 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 0.96

Table S496.  Gene #50: 'C10ORF28 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
C10ORF28 MUTATED 3 2 0 2
C10ORF28 WILD-TYPE 80 79 78 46
'C10ORF28 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S497.  Gene #50: 'C10ORF28 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
C10ORF28 MUTATED 1 1 4 0 0
C10ORF28 WILD-TYPE 60 71 87 16 40
'C10ORF28 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.87

Table S498.  Gene #50: 'C10ORF28 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
C10ORF28 MUTATED 2 0 4 0
C10ORF28 WILD-TYPE 97 71 70 36
'C10ORF28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.87

Table S499.  Gene #50: 'C10ORF28 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
C10ORF28 MUTATED 1 0 4
C10ORF28 WILD-TYPE 74 89 101
'C10ORF28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S500.  Gene #50: 'C10ORF28 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
C10ORF28 MUTATED 4 1 0 0
C10ORF28 WILD-TYPE 120 55 61 28
'MAN1A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S501.  Gene #51: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MAN1A1 MUTATED 3 8 4
MAN1A1 WILD-TYPE 73 101 101
'MAN1A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S502.  Gene #51: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MAN1A1 MUTATED 5 8 2
MAN1A1 WILD-TYPE 93 108 74
'MAN1A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S503.  Gene #51: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
MAN1A1 MUTATED 4 2 3 0
MAN1A1 WILD-TYPE 46 49 39 26
'MAN1A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.86

Table S504.  Gene #51: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MAN1A1 MUTATED 2 5 2 0
MAN1A1 WILD-TYPE 25 53 33 49
'MAN1A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.87

Table S505.  Gene #51: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MAN1A1 MUTATED 6 7 2
MAN1A1 WILD-TYPE 97 79 99
'MAN1A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S506.  Gene #51: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MAN1A1 MUTATED 3 7 3 2
MAN1A1 WILD-TYPE 80 74 75 46
'MAN1A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S507.  Gene #51: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
MAN1A1 MUTATED 6 3 3 1 1
MAN1A1 WILD-TYPE 55 69 88 15 39
'MAN1A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.04 (Fisher's exact test), Q value = 0.75

Table S508.  Gene #51: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MAN1A1 MUTATED 1 5 7 1
MAN1A1 WILD-TYPE 98 66 67 35

Figure S42.  Get High-res Image Gene #51: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MAN1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.86

Table S509.  Gene #51: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
MAN1A1 MUTATED 7 2 5
MAN1A1 WILD-TYPE 68 87 100
'MAN1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S510.  Gene #51: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
MAN1A1 MUTATED 9 1 3 1
MAN1A1 WILD-TYPE 115 55 58 27
'OXA1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S511.  Gene #52: 'OXA1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
OXA1L MUTATED 3 2 3
OXA1L WILD-TYPE 73 107 102
'OXA1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S512.  Gene #52: 'OXA1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
OXA1L MUTATED 4 2 2
OXA1L WILD-TYPE 94 114 74
'OXA1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S513.  Gene #52: 'OXA1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
OXA1L MUTATED 1 2 1 1
OXA1L WILD-TYPE 49 49 41 25
'OXA1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S514.  Gene #52: 'OXA1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
OXA1L MUTATED 0 1 1 3
OXA1L WILD-TYPE 27 57 34 46
'OXA1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S515.  Gene #52: 'OXA1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
OXA1L MUTATED 4 3 1
OXA1L WILD-TYPE 99 83 100
'OXA1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S516.  Gene #52: 'OXA1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
OXA1L MUTATED 3 2 1 2
OXA1L WILD-TYPE 80 79 77 46
'OXA1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S517.  Gene #52: 'OXA1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
OXA1L MUTATED 3 1 2 0 2
OXA1L WILD-TYPE 58 71 89 16 38
'OXA1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S518.  Gene #52: 'OXA1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
OXA1L MUTATED 2 1 4 1
OXA1L WILD-TYPE 97 70 70 35
'OXA1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0867 (Fisher's exact test), Q value = 0.84

Table S519.  Gene #52: 'OXA1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
OXA1L MUTATED 3 0 5
OXA1L WILD-TYPE 72 89 100
'OXA1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.96

Table S520.  Gene #52: 'OXA1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
OXA1L MUTATED 6 1 0 1
OXA1L WILD-TYPE 118 55 61 27
'NAP1L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S521.  Gene #53: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
NAP1L2 MUTATED 8 11 6
NAP1L2 WILD-TYPE 68 98 99
'NAP1L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S522.  Gene #53: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
NAP1L2 MUTATED 8 10 7
NAP1L2 WILD-TYPE 90 106 69
'NAP1L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S523.  Gene #53: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
NAP1L2 MUTATED 5 5 5 1
NAP1L2 WILD-TYPE 45 46 37 25
'NAP1L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S524.  Gene #53: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
NAP1L2 MUTATED 4 4 4 4
NAP1L2 WILD-TYPE 23 54 31 45
'NAP1L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S525.  Gene #53: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
NAP1L2 MUTATED 11 8 6
NAP1L2 WILD-TYPE 92 78 95
'NAP1L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S526.  Gene #53: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
NAP1L2 MUTATED 9 7 4 5
NAP1L2 WILD-TYPE 74 74 74 43
'NAP1L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S527.  Gene #53: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
NAP1L2 MUTATED 6 4 10 0 3
NAP1L2 WILD-TYPE 55 68 81 16 37
'NAP1L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S528.  Gene #53: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
NAP1L2 MUTATED 9 7 5 2
NAP1L2 WILD-TYPE 90 64 69 34
'NAP1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00488 (Fisher's exact test), Q value = 0.38

Table S529.  Gene #53: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
NAP1L2 MUTATED 13 3 6
NAP1L2 WILD-TYPE 62 86 99

Figure S43.  Get High-res Image Gene #53: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NAP1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S530.  Gene #53: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
NAP1L2 MUTATED 12 4 5 1
NAP1L2 WILD-TYPE 112 52 56 27
'MPP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.96

Table S531.  Gene #54: 'MPP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MPP7 MUTATED 11 13 8
MPP7 WILD-TYPE 65 96 97
'MPP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0604 (Fisher's exact test), Q value = 0.82

Table S532.  Gene #54: 'MPP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MPP7 MUTATED 17 10 5
MPP7 WILD-TYPE 81 106 71
'MPP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S533.  Gene #54: 'MPP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
MPP7 MUTATED 6 9 4 1
MPP7 WILD-TYPE 44 42 38 25
'MPP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.93

Table S534.  Gene #54: 'MPP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MPP7 MUTATED 4 9 1 6
MPP7 WILD-TYPE 23 49 34 43
'MPP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.87

Table S535.  Gene #54: 'MPP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MPP7 MUTATED 16 9 7
MPP7 WILD-TYPE 87 77 94
'MPP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.92

Table S536.  Gene #54: 'MPP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MPP7 MUTATED 14 8 5 5
MPP7 WILD-TYPE 69 73 73 43
'MPP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S537.  Gene #54: 'MPP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
MPP7 MUTATED 7 8 11 0 5
MPP7 WILD-TYPE 54 64 80 16 35
'MPP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S538.  Gene #54: 'MPP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MPP7 MUTATED 10 10 7 4
MPP7 WILD-TYPE 89 61 67 32
'MPP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S539.  Gene #54: 'MPP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
MPP7 MUTATED 7 9 13
MPP7 WILD-TYPE 68 80 92
'MPP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S540.  Gene #54: 'MPP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
MPP7 MUTATED 12 7 6 4
MPP7 WILD-TYPE 112 49 55 24
'BTK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0896 (Fisher's exact test), Q value = 0.84

Table S541.  Gene #55: 'BTK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
BTK MUTATED 1 5 9
BTK WILD-TYPE 75 104 96
'BTK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.9

Table S542.  Gene #55: 'BTK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
BTK MUTATED 6 8 1
BTK WILD-TYPE 92 108 75
'BTK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S543.  Gene #55: 'BTK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
BTK MUTATED 3 2 5 1
BTK WILD-TYPE 47 49 37 25
'BTK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S544.  Gene #55: 'BTK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
BTK MUTATED 0 5 3 3
BTK WILD-TYPE 27 53 32 46
'BTK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00433 (Fisher's exact test), Q value = 0.38

Table S545.  Gene #55: 'BTK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
BTK MUTATED 1 10 4
BTK WILD-TYPE 102 76 97

Figure S44.  Get High-res Image Gene #55: 'BTK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BTK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.99

Table S546.  Gene #55: 'BTK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
BTK MUTATED 2 6 3 4
BTK WILD-TYPE 81 75 75 44
'BTK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S547.  Gene #55: 'BTK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
BTK MUTATED 4 3 4 0 3
BTK WILD-TYPE 57 69 87 16 37
'BTK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S548.  Gene #55: 'BTK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
BTK MUTATED 6 5 1 2
BTK WILD-TYPE 93 66 73 34
'BTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S549.  Gene #55: 'BTK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
BTK MUTATED 6 4 4
BTK WILD-TYPE 69 85 101
'BTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.87

Table S550.  Gene #55: 'BTK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
BTK MUTATED 8 0 5 1
BTK WILD-TYPE 116 56 56 27
'SLC9A11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.91

Table S551.  Gene #56: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SLC9A11 MUTATED 12 21 11
SLC9A11 WILD-TYPE 64 88 94
'SLC9A11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.93

Table S552.  Gene #56: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SLC9A11 MUTATED 17 20 7
SLC9A11 WILD-TYPE 81 96 69
'SLC9A11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S553.  Gene #56: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
SLC9A11 MUTATED 8 12 5 5
SLC9A11 WILD-TYPE 42 39 37 21
'SLC9A11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S554.  Gene #56: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SLC9A11 MUTATED 3 10 6 11
SLC9A11 WILD-TYPE 24 48 29 38
'SLC9A11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S555.  Gene #56: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SLC9A11 MUTATED 15 16 13
SLC9A11 WILD-TYPE 88 70 88
'SLC9A11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S556.  Gene #56: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SLC9A11 MUTATED 12 12 11 9
SLC9A11 WILD-TYPE 71 69 67 39
'SLC9A11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S557.  Gene #56: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
SLC9A11 MUTATED 9 12 15 1 6
SLC9A11 WILD-TYPE 52 60 76 15 34
'SLC9A11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S558.  Gene #56: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
SLC9A11 MUTATED 14 13 9 7
SLC9A11 WILD-TYPE 85 58 65 29
'SLC9A11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S559.  Gene #56: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
SLC9A11 MUTATED 13 12 17
SLC9A11 WILD-TYPE 62 77 88
'SLC9A11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S560.  Gene #56: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
SLC9A11 MUTATED 19 11 7 5
SLC9A11 WILD-TYPE 105 45 54 23
'EMG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S561.  Gene #57: 'EMG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
EMG1 MUTATED 3 3 1
EMG1 WILD-TYPE 73 106 104
'EMG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S562.  Gene #57: 'EMG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
EMG1 MUTATED 3 2 2
EMG1 WILD-TYPE 95 114 74
'EMG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S563.  Gene #57: 'EMG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
EMG1 MUTATED 2 1 0 1
EMG1 WILD-TYPE 48 50 42 25
'EMG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.95

Table S564.  Gene #57: 'EMG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
EMG1 MUTATED 1 1 2 0
EMG1 WILD-TYPE 26 57 33 49
'EMG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.87

Table S565.  Gene #57: 'EMG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
EMG1 MUTATED 1 1 5
EMG1 WILD-TYPE 102 85 96
'EMG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S566.  Gene #57: 'EMG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
EMG1 MUTATED 2 1 4 0
EMG1 WILD-TYPE 81 80 74 48
'EMG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S567.  Gene #57: 'EMG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
EMG1 MUTATED 2 3 1 0 1
EMG1 WILD-TYPE 59 69 90 16 39
'EMG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S568.  Gene #57: 'EMG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
EMG1 MUTATED 2 2 2 1
EMG1 WILD-TYPE 97 69 72 35
'EMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S569.  Gene #57: 'EMG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
EMG1 MUTATED 1 3 3
EMG1 WILD-TYPE 74 86 102
'EMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.87

Table S570.  Gene #57: 'EMG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
EMG1 MUTATED 1 3 2 1
EMG1 WILD-TYPE 123 53 59 27
'SELP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S571.  Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SELP MUTATED 10 11 12
SELP WILD-TYPE 66 98 93
'SELP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0597 (Fisher's exact test), Q value = 0.82

Table S572.  Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SELP MUTATED 17 8 8
SELP WILD-TYPE 81 108 68
'SELP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0425 (Fisher's exact test), Q value = 0.75

Table S573.  Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
SELP MUTATED 9 3 6 0
SELP WILD-TYPE 41 48 36 26

Figure S45.  Get High-res Image Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SELP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0773 (Fisher's exact test), Q value = 0.84

Table S574.  Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SELP MUTATED 3 9 5 1
SELP WILD-TYPE 24 49 30 48
'SELP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.96

Table S575.  Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SELP MUTATED 14 6 13
SELP WILD-TYPE 89 80 88
'SELP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.99

Table S576.  Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SELP MUTATED 11 5 10 7
SELP WILD-TYPE 72 76 68 41
'SELP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.977 (Fisher's exact test), Q value = 1

Table S577.  Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
SELP MUTATED 7 7 11 2 5
SELP WILD-TYPE 54 65 80 14 35
'SELP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S578.  Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
SELP MUTATED 14 9 5 4
SELP WILD-TYPE 85 62 69 32
'SELP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S579.  Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
SELP MUTATED 8 8 14
SELP WILD-TYPE 67 81 91
'SELP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S580.  Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
SELP MUTATED 13 7 7 3
SELP WILD-TYPE 111 49 54 25
'PARM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S581.  Gene #59: 'PARM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PARM1 MUTATED 6 8 5
PARM1 WILD-TYPE 70 101 100
'PARM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S582.  Gene #59: 'PARM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PARM1 MUTATED 6 8 5
PARM1 WILD-TYPE 92 108 71
'PARM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S583.  Gene #59: 'PARM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
PARM1 MUTATED 5 3 2 4
PARM1 WILD-TYPE 45 48 40 22
'PARM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 0.98

Table S584.  Gene #59: 'PARM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PARM1 MUTATED 4 6 1 3
PARM1 WILD-TYPE 23 52 34 46
'PARM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S585.  Gene #59: 'PARM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PARM1 MUTATED 6 6 7
PARM1 WILD-TYPE 97 80 94
'PARM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.86

Table S586.  Gene #59: 'PARM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PARM1 MUTATED 5 8 6 0
PARM1 WILD-TYPE 78 73 72 48
'PARM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S587.  Gene #59: 'PARM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
PARM1 MUTATED 2 8 5 0 3
PARM1 WILD-TYPE 59 64 86 16 37
'PARM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.97

Table S588.  Gene #59: 'PARM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
PARM1 MUTATED 6 7 2 3
PARM1 WILD-TYPE 93 64 72 33
'PARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S589.  Gene #59: 'PARM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
PARM1 MUTATED 4 8 6
PARM1 WILD-TYPE 71 81 99
'PARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.9

Table S590.  Gene #59: 'PARM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
PARM1 MUTATED 6 2 7 3
PARM1 WILD-TYPE 118 54 54 25
'ACSBG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.93

Table S591.  Gene #60: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ACSBG1 MUTATED 2 8 3
ACSBG1 WILD-TYPE 74 101 102
'ACSBG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S592.  Gene #60: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ACSBG1 MUTATED 4 7 2
ACSBG1 WILD-TYPE 94 109 74
'ACSBG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S593.  Gene #60: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
ACSBG1 MUTATED 3 2 2 0
ACSBG1 WILD-TYPE 47 49 40 26
'ACSBG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.87

Table S594.  Gene #60: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ACSBG1 MUTATED 1 5 1 0
ACSBG1 WILD-TYPE 26 53 34 49
'ACSBG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S595.  Gene #60: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ACSBG1 MUTATED 3 6 4
ACSBG1 WILD-TYPE 100 80 97
'ACSBG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S596.  Gene #60: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ACSBG1 MUTATED 2 6 4 1
ACSBG1 WILD-TYPE 81 75 74 47
'ACSBG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S597.  Gene #60: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
ACSBG1 MUTATED 3 3 5 0 2
ACSBG1 WILD-TYPE 58 69 86 16 38
'ACSBG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.96

Table S598.  Gene #60: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ACSBG1 MUTATED 3 6 2 2
ACSBG1 WILD-TYPE 96 65 72 34
'ACSBG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S599.  Gene #60: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
ACSBG1 MUTATED 4 4 4
ACSBG1 WILD-TYPE 71 85 101
'ACSBG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S600.  Gene #60: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
ACSBG1 MUTATED 4 2 4 2
ACSBG1 WILD-TYPE 120 54 57 26
'CCK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S601.  Gene #61: 'CCK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CCK MUTATED 3 1 2
CCK WILD-TYPE 73 108 103
'CCK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S602.  Gene #61: 'CCK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CCK MUTATED 1 4 1
CCK WILD-TYPE 97 112 75
'CCK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.95

Table S603.  Gene #61: 'CCK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
CCK MUTATED 3 1 0 0
CCK WILD-TYPE 47 50 42 26
'CCK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0143 (Fisher's exact test), Q value = 0.6

Table S604.  Gene #61: 'CCK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CCK MUTATED 3 1 0 0
CCK WILD-TYPE 24 57 35 49

Figure S46.  Get High-res Image Gene #61: 'CCK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CCK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S605.  Gene #61: 'CCK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CCK MUTATED 1 3 2
CCK WILD-TYPE 102 83 99
'CCK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S606.  Gene #61: 'CCK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CCK MUTATED 2 2 2 0
CCK WILD-TYPE 81 79 76 48
'CCK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S607.  Gene #61: 'CCK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
CCK MUTATED 1 1 2 1 1
CCK WILD-TYPE 60 71 89 15 39
'CCK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S608.  Gene #61: 'CCK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
CCK MUTATED 2 1 2 1
CCK WILD-TYPE 97 70 72 35
'CCK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S609.  Gene #61: 'CCK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
CCK MUTATED 2 2 2
CCK WILD-TYPE 73 87 103
'CCK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S610.  Gene #61: 'CCK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
CCK MUTATED 2 2 1 1
CCK WILD-TYPE 122 54 60 27
'C1QTNF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S611.  Gene #62: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
C1QTNF9 MUTATED 4 8 4
C1QTNF9 WILD-TYPE 72 101 101
'C1QTNF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S612.  Gene #62: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
C1QTNF9 MUTATED 5 8 3
C1QTNF9 WILD-TYPE 93 108 73
'C1QTNF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S613.  Gene #62: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
C1QTNF9 MUTATED 3 4 1 2
C1QTNF9 WILD-TYPE 47 47 41 24
'C1QTNF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S614.  Gene #62: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
C1QTNF9 MUTATED 1 4 3 2
C1QTNF9 WILD-TYPE 26 54 32 47
'C1QTNF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S615.  Gene #62: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
C1QTNF9 MUTATED 6 5 5
C1QTNF9 WILD-TYPE 97 81 96
'C1QTNF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S616.  Gene #62: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
C1QTNF9 MUTATED 3 5 3 5
C1QTNF9 WILD-TYPE 80 76 75 43
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S617.  Gene #62: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
C1QTNF9 MUTATED 4 6 3 1 1
C1QTNF9 WILD-TYPE 57 66 88 15 39
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.9

Table S618.  Gene #62: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
C1QTNF9 MUTATED 7 6 2 0
C1QTNF9 WILD-TYPE 92 65 72 36
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S619.  Gene #62: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
C1QTNF9 MUTATED 5 5 5
C1QTNF9 WILD-TYPE 70 84 100
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S620.  Gene #62: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
C1QTNF9 MUTATED 7 3 5 0
C1QTNF9 WILD-TYPE 117 53 56 28
'UBE2V2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S621.  Gene #63: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
UBE2V2 MUTATED 0 2 1
UBE2V2 WILD-TYPE 76 107 104
'UBE2V2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S622.  Gene #63: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
UBE2V2 MUTATED 1 1 1
UBE2V2 WILD-TYPE 97 115 75
'UBE2V2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.92

Table S623.  Gene #63: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
UBE2V2 MUTATED 0 2 1
UBE2V2 WILD-TYPE 103 84 100
'UBE2V2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S624.  Gene #63: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
UBE2V2 MUTATED 0 1 1 1
UBE2V2 WILD-TYPE 83 80 77 47
'UBE2V2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S625.  Gene #63: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
UBE2V2 MUTATED 1 1 1 0 0
UBE2V2 WILD-TYPE 60 71 90 16 40
'UBE2V2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S626.  Gene #63: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
UBE2V2 MUTATED 1 1 1 0
UBE2V2 WILD-TYPE 98 70 73 36
'UBE2V2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.91

Table S627.  Gene #63: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
UBE2V2 MUTATED 2 1 0
UBE2V2 WILD-TYPE 73 88 105
'UBE2V2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S628.  Gene #63: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
UBE2V2 MUTATED 2 0 1 0
UBE2V2 WILD-TYPE 122 56 60 28
'BOLA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.95

Table S629.  Gene #64: 'BOLA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
BOLA1 MUTATED 2 1 0
BOLA1 WILD-TYPE 74 108 105
'BOLA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S630.  Gene #64: 'BOLA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
BOLA1 MUTATED 1 2 0
BOLA1 WILD-TYPE 97 114 76
'BOLA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S631.  Gene #64: 'BOLA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
BOLA1 MUTATED 2 0 1
BOLA1 WILD-TYPE 101 86 100
'BOLA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.86

Table S632.  Gene #64: 'BOLA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
BOLA1 MUTATED 1 0 0 2
BOLA1 WILD-TYPE 82 81 78 46
'BOLA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S633.  Gene #64: 'BOLA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
BOLA1 MUTATED 0 1 2 0 0
BOLA1 WILD-TYPE 61 71 89 16 40
'BOLA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S634.  Gene #64: 'BOLA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
BOLA1 MUTATED 1 0 2 0
BOLA1 WILD-TYPE 98 71 72 36
'BOLA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.95

Table S635.  Gene #64: 'BOLA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
BOLA1 MUTATED 2 0 1
BOLA1 WILD-TYPE 73 89 104
'BOLA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S636.  Gene #64: 'BOLA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
BOLA1 MUTATED 2 1 0 0
BOLA1 WILD-TYPE 122 55 61 28
'IFNGR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S637.  Gene #65: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
IFNGR2 MUTATED 1 2 1
IFNGR2 WILD-TYPE 75 107 104
'IFNGR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S638.  Gene #65: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
IFNGR2 MUTATED 1 3 0
IFNGR2 WILD-TYPE 97 113 76
'IFNGR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S639.  Gene #65: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
IFNGR2 MUTATED 2 1 0 0
IFNGR2 WILD-TYPE 48 50 42 26
'IFNGR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0689 (Fisher's exact test), Q value = 0.84

Table S640.  Gene #65: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
IFNGR2 MUTATED 2 0 0 1
IFNGR2 WILD-TYPE 25 58 35 48
'IFNGR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S641.  Gene #65: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
IFNGR2 MUTATED 2 2 0
IFNGR2 WILD-TYPE 101 84 101
'IFNGR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.93

Table S642.  Gene #65: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
IFNGR2 MUTATED 3 0 1 0
IFNGR2 WILD-TYPE 80 81 77 48
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S643.  Gene #65: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
IFNGR2 MUTATED 1 2 1 0 0
IFNGR2 WILD-TYPE 60 70 90 16 40
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S644.  Gene #65: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
IFNGR2 MUTATED 1 1 2 0
IFNGR2 WILD-TYPE 98 70 72 36
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S645.  Gene #65: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
IFNGR2 MUTATED 1 2 1
IFNGR2 WILD-TYPE 74 87 104
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S646.  Gene #65: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
IFNGR2 MUTATED 2 1 1 0
IFNGR2 WILD-TYPE 122 55 60 28
'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.86

Table S647.  Gene #66: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
KRAS MUTATED 4 1 1
KRAS WILD-TYPE 72 108 104
'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S648.  Gene #66: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
KRAS MUTATED 3 1 2
KRAS WILD-TYPE 95 115 74
'KRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.87

Table S649.  Gene #66: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
KRAS MUTATED 0 2 3 0
KRAS WILD-TYPE 50 49 39 26
'KRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S650.  Gene #66: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
KRAS MUTATED 0 1 1 3
KRAS WILD-TYPE 27 57 34 46
'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.86

Table S651.  Gene #66: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
KRAS MUTATED 4 2 0
KRAS WILD-TYPE 99 84 101
'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.92

Table S652.  Gene #66: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
KRAS MUTATED 4 1 0 1
KRAS WILD-TYPE 79 80 78 47
'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S653.  Gene #66: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
KRAS MUTATED 3 0 2 0 1
KRAS WILD-TYPE 58 72 89 16 39
'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.87

Table S654.  Gene #66: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
KRAS MUTATED 2 0 4 0
KRAS WILD-TYPE 97 71 70 36
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.95

Table S655.  Gene #66: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
KRAS MUTATED 2 0 3
KRAS WILD-TYPE 73 89 102
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.92

Table S656.  Gene #66: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
KRAS MUTATED 5 0 0 0
KRAS WILD-TYPE 119 56 61 28
'ZNF595 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S657.  Gene #67: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ZNF595 MUTATED 2 2 4
ZNF595 WILD-TYPE 74 107 101
'ZNF595 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.87

Table S658.  Gene #67: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ZNF595 MUTATED 5 1 2
ZNF595 WILD-TYPE 93 115 74
'ZNF595 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S659.  Gene #67: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
ZNF595 MUTATED 0 3 1 1
ZNF595 WILD-TYPE 50 48 41 25
'ZNF595 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S660.  Gene #67: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ZNF595 MUTATED 0 1 1 3
ZNF595 WILD-TYPE 27 57 34 46
'ZNF595 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S661.  Gene #67: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ZNF595 MUTATED 1 3 4
ZNF595 WILD-TYPE 102 83 97
'ZNF595 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.97

Table S662.  Gene #67: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ZNF595 MUTATED 1 3 4 0
ZNF595 WILD-TYPE 82 78 74 48
'ZNF595 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S663.  Gene #67: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
ZNF595 MUTATED 3 1 3 0 1
ZNF595 WILD-TYPE 58 71 88 16 39
'ZNF595 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S664.  Gene #67: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ZNF595 MUTATED 4 3 1 0
ZNF595 WILD-TYPE 95 68 73 36
'ZNF595 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S665.  Gene #67: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
ZNF595 MUTATED 2 1 5
ZNF595 WILD-TYPE 73 88 100
'ZNF595 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S666.  Gene #67: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
ZNF595 MUTATED 5 0 3 0
ZNF595 WILD-TYPE 119 56 58 28
'PRKAA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0292 (Fisher's exact test), Q value = 0.75

Table S667.  Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PRKAA2 MUTATED 6 15 4
PRKAA2 WILD-TYPE 70 94 101

Figure S47.  Get High-res Image Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PRKAA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.047

Table S668.  Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PRKAA2 MUTATED 8 17 0
PRKAA2 WILD-TYPE 90 99 76

Figure S48.  Get High-res Image Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PRKAA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S669.  Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
PRKAA2 MUTATED 7 3 3 2
PRKAA2 WILD-TYPE 43 48 39 24
'PRKAA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.87

Table S670.  Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PRKAA2 MUTATED 4 6 4 1
PRKAA2 WILD-TYPE 23 52 31 48
'PRKAA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0441 (Fisher's exact test), Q value = 0.75

Table S671.  Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PRKAA2 MUTATED 7 13 5
PRKAA2 WILD-TYPE 96 73 96

Figure S49.  Get High-res Image Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PRKAA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0318 (Fisher's exact test), Q value = 0.75

Table S672.  Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PRKAA2 MUTATED 3 11 4 7
PRKAA2 WILD-TYPE 80 70 74 41

Figure S50.  Get High-res Image Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PRKAA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S673.  Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
PRKAA2 MUTATED 4 8 8 0 5
PRKAA2 WILD-TYPE 57 64 83 16 35
'PRKAA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S674.  Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
PRKAA2 MUTATED 7 7 7 4
PRKAA2 WILD-TYPE 92 64 67 32
'PRKAA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S675.  Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
PRKAA2 MUTATED 9 7 8
PRKAA2 WILD-TYPE 66 82 97
'PRKAA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S676.  Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
PRKAA2 MUTATED 10 5 5 4
PRKAA2 WILD-TYPE 114 51 56 24
'MMP27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S677.  Gene #69: 'MMP27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MMP27 MUTATED 2 7 4
MMP27 WILD-TYPE 74 102 101
'MMP27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S678.  Gene #69: 'MMP27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MMP27 MUTATED 5 4 4
MMP27 WILD-TYPE 93 112 72
'MMP27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S679.  Gene #69: 'MMP27 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
MMP27 MUTATED 3 2 4 0
MMP27 WILD-TYPE 47 49 38 26
'MMP27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S680.  Gene #69: 'MMP27 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MMP27 MUTATED 1 3 2 3
MMP27 WILD-TYPE 26 55 33 46
'MMP27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S681.  Gene #69: 'MMP27 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MMP27 MUTATED 5 4 4
MMP27 WILD-TYPE 98 82 97
'MMP27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.98 (Fisher's exact test), Q value = 1

Table S682.  Gene #69: 'MMP27 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MMP27 MUTATED 4 3 4 2
MMP27 WILD-TYPE 79 78 74 46
'MMP27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S683.  Gene #69: 'MMP27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
MMP27 MUTATED 1 5 4 0 2
MMP27 WILD-TYPE 60 67 87 16 38
'MMP27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S684.  Gene #69: 'MMP27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MMP27 MUTATED 3 5 2 2
MMP27 WILD-TYPE 96 66 72 34
'MMP27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S685.  Gene #69: 'MMP27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
MMP27 MUTATED 2 5 4
MMP27 WILD-TYPE 73 84 101
'MMP27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S686.  Gene #69: 'MMP27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
MMP27 MUTATED 4 2 4 1
MMP27 WILD-TYPE 120 54 57 27
'POLR2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S687.  Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
POLR2B MUTATED 3 3 4
POLR2B WILD-TYPE 73 106 101
'POLR2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0418 (Fisher's exact test), Q value = 0.75

Table S688.  Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
POLR2B MUTATED 7 1 2
POLR2B WILD-TYPE 91 115 74

Figure S51.  Get High-res Image Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'POLR2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.63

Table S689.  Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
POLR2B MUTATED 0 1 4 3
POLR2B WILD-TYPE 50 50 38 23

Figure S52.  Get High-res Image Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'POLR2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.86

Table S690.  Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
POLR2B MUTATED 0 1 2 5
POLR2B WILD-TYPE 27 57 33 44
'POLR2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S691.  Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
POLR2B MUTATED 5 2 3
POLR2B WILD-TYPE 98 84 98
'POLR2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S692.  Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
POLR2B MUTATED 5 2 2 1
POLR2B WILD-TYPE 78 79 76 47
'POLR2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S693.  Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
POLR2B MUTATED 1 2 5 1 0
POLR2B WILD-TYPE 60 70 86 15 40
'POLR2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S694.  Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
POLR2B MUTATED 4 4 1 0
POLR2B WILD-TYPE 95 67 73 36
'POLR2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.98

Table S695.  Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
POLR2B MUTATED 3 1 5
POLR2B WILD-TYPE 72 88 100
'POLR2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S696.  Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
POLR2B MUTATED 5 2 2 0
POLR2B WILD-TYPE 119 54 59 28
'CSN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0659 (Fisher's exact test), Q value = 0.84

Table S697.  Gene #71: 'CSN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CSN3 MUTATED 3 0 1
CSN3 WILD-TYPE 73 109 104
'CSN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.93

Table S698.  Gene #71: 'CSN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CSN3 MUTATED 3 1 0
CSN3 WILD-TYPE 95 115 76
'CSN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.93

Table S699.  Gene #71: 'CSN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
CSN3 MUTATED 0 2 0 1
CSN3 WILD-TYPE 50 49 42 25
'CSN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S700.  Gene #71: 'CSN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CSN3 MUTATED 0 2 1 0
CSN3 WILD-TYPE 27 56 34 49
'CSN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S701.  Gene #71: 'CSN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CSN3 MUTATED 1 1 2
CSN3 WILD-TYPE 102 85 99
'CSN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S702.  Gene #71: 'CSN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CSN3 MUTATED 0 1 2 1
CSN3 WILD-TYPE 83 80 76 47
'CSN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S703.  Gene #71: 'CSN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
CSN3 MUTATED 1 0 2 0 1
CSN3 WILD-TYPE 60 72 89 16 39
'CSN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S704.  Gene #71: 'CSN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
CSN3 MUTATED 1 1 1 1
CSN3 WILD-TYPE 98 70 73 35
'CSN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S705.  Gene #71: 'CSN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
CSN3 MUTATED 1 1 2
CSN3 WILD-TYPE 74 88 103
'CSN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.94

Table S706.  Gene #71: 'CSN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
CSN3 MUTATED 3 0 0 1
CSN3 WILD-TYPE 121 56 61 27
'CASP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S707.  Gene #72: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CASP8 MUTATED 2 2 5
CASP8 WILD-TYPE 74 107 100
'CASP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S708.  Gene #72: 'CASP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CASP8 MUTATED 5 3 1
CASP8 WILD-TYPE 93 113 75
'CASP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S709.  Gene #72: 'CASP8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
CASP8 MUTATED 1 3 3 0
CASP8 WILD-TYPE 49 48 39 26
'CASP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S710.  Gene #72: 'CASP8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CASP8 MUTATED 1 4 1 1
CASP8 WILD-TYPE 26 54 34 48
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0935 (Fisher's exact test), Q value = 0.84

Table S711.  Gene #72: 'CASP8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CASP8 MUTATED 4 0 5
CASP8 WILD-TYPE 99 86 96
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S712.  Gene #72: 'CASP8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CASP8 MUTATED 3 2 3 1
CASP8 WILD-TYPE 80 79 75 47
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S713.  Gene #72: 'CASP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
CASP8 MUTATED 3 1 4 0 1
CASP8 WILD-TYPE 58 71 87 16 39
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S714.  Gene #72: 'CASP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
CASP8 MUTATED 5 2 1 1
CASP8 WILD-TYPE 94 69 73 35
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.052 (Fisher's exact test), Q value = 0.79

Table S715.  Gene #72: 'CASP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
CASP8 MUTATED 3 0 6
CASP8 WILD-TYPE 72 89 99
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.958 (Fisher's exact test), Q value = 1

Table S716.  Gene #72: 'CASP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
CASP8 MUTATED 5 1 2 1
CASP8 WILD-TYPE 119 55 59 27
'PPFIA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S717.  Gene #73: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PPFIA1 MUTATED 4 5 7
PPFIA1 WILD-TYPE 72 104 98
'PPFIA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.95

Table S718.  Gene #73: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PPFIA1 MUTATED 8 6 2
PPFIA1 WILD-TYPE 90 110 74
'PPFIA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S719.  Gene #73: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
PPFIA1 MUTATED 1 2 3 0
PPFIA1 WILD-TYPE 49 49 39 26
'PPFIA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S720.  Gene #73: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PPFIA1 MUTATED 0 2 2 2
PPFIA1 WILD-TYPE 27 56 33 47
'PPFIA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S721.  Gene #73: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PPFIA1 MUTATED 6 5 5
PPFIA1 WILD-TYPE 97 81 96
'PPFIA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S722.  Gene #73: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PPFIA1 MUTATED 5 3 4 4
PPFIA1 WILD-TYPE 78 78 74 44
'PPFIA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S723.  Gene #73: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
PPFIA1 MUTATED 4 2 8 0 2
PPFIA1 WILD-TYPE 57 70 83 16 38
'PPFIA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S724.  Gene #73: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
PPFIA1 MUTATED 6 4 5 1
PPFIA1 WILD-TYPE 93 67 69 35
'PPFIA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0992 (Fisher's exact test), Q value = 0.84

Table S725.  Gene #73: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
PPFIA1 MUTATED 4 2 10
PPFIA1 WILD-TYPE 71 87 95
'PPFIA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.96

Table S726.  Gene #73: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
PPFIA1 MUTATED 11 1 3 1
PPFIA1 WILD-TYPE 113 55 58 27
'ZNF490 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S727.  Gene #74: 'ZNF490 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ZNF490 MUTATED 6 5 5
ZNF490 WILD-TYPE 70 104 100
'ZNF490 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S728.  Gene #74: 'ZNF490 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ZNF490 MUTATED 7 6 3
ZNF490 WILD-TYPE 91 110 73
'ZNF490 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.93

Table S729.  Gene #74: 'ZNF490 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
ZNF490 MUTATED 5 1 1 2
ZNF490 WILD-TYPE 45 50 41 24
'ZNF490 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.86

Table S730.  Gene #74: 'ZNF490 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ZNF490 MUTATED 4 2 2 1
ZNF490 WILD-TYPE 23 56 33 48
'ZNF490 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S731.  Gene #74: 'ZNF490 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ZNF490 MUTATED 8 5 3
ZNF490 WILD-TYPE 95 81 98
'ZNF490 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S732.  Gene #74: 'ZNF490 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ZNF490 MUTATED 6 5 2 3
ZNF490 WILD-TYPE 77 76 76 45
'ZNF490 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S733.  Gene #74: 'ZNF490 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
ZNF490 MUTATED 2 5 5 0 3
ZNF490 WILD-TYPE 59 67 86 16 37
'ZNF490 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.93

Table S734.  Gene #74: 'ZNF490 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ZNF490 MUTATED 4 5 2 4
ZNF490 WILD-TYPE 95 66 72 32
'ZNF490 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S735.  Gene #74: 'ZNF490 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
ZNF490 MUTATED 2 6 5
ZNF490 WILD-TYPE 73 83 100
'ZNF490 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S736.  Gene #74: 'ZNF490 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
ZNF490 MUTATED 4 4 3 2
ZNF490 WILD-TYPE 120 52 58 26
'IL5RA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S737.  Gene #75: 'IL5RA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
IL5RA MUTATED 3 8 5
IL5RA WILD-TYPE 73 101 100
'IL5RA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S738.  Gene #75: 'IL5RA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
IL5RA MUTATED 7 5 4
IL5RA WILD-TYPE 91 111 72
'IL5RA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S739.  Gene #75: 'IL5RA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
IL5RA MUTATED 3 2 4 1
IL5RA WILD-TYPE 47 49 38 25
'IL5RA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0868 (Fisher's exact test), Q value = 0.84

Table S740.  Gene #75: 'IL5RA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
IL5RA MUTATED 0 5 0 5
IL5RA WILD-TYPE 27 53 35 44
'IL5RA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S741.  Gene #75: 'IL5RA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
IL5RA MUTATED 4 7 5
IL5RA WILD-TYPE 99 79 96
'IL5RA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S742.  Gene #75: 'IL5RA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
IL5RA MUTATED 6 3 3 4
IL5RA WILD-TYPE 77 78 75 44
'IL5RA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S743.  Gene #75: 'IL5RA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
IL5RA MUTATED 5 6 3 0 1
IL5RA WILD-TYPE 56 66 88 16 39
'IL5RA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S744.  Gene #75: 'IL5RA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
IL5RA MUTATED 3 5 6 1
IL5RA WILD-TYPE 96 66 68 35
'IL5RA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.93

Table S745.  Gene #75: 'IL5RA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
IL5RA MUTATED 7 3 5
IL5RA WILD-TYPE 68 86 100
'IL5RA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S746.  Gene #75: 'IL5RA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
IL5RA MUTATED 9 3 3 0
IL5RA WILD-TYPE 115 53 58 28
'LILRB5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.6

Table S747.  Gene #76: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
LILRB5 MUTATED 9 8 2
LILRB5 WILD-TYPE 67 101 103

Figure S53.  Get High-res Image Gene #76: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LILRB5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0464 (Fisher's exact test), Q value = 0.78

Table S748.  Gene #76: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
LILRB5 MUTATED 10 8 1
LILRB5 WILD-TYPE 88 108 75

Figure S54.  Get High-res Image Gene #76: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LILRB5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S749.  Gene #76: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
LILRB5 MUTATED 3 3 4 1
LILRB5 WILD-TYPE 47 48 38 25
'LILRB5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S750.  Gene #76: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
LILRB5 MUTATED 1 6 1 3
LILRB5 WILD-TYPE 26 52 34 46
'LILRB5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0819 (Fisher's exact test), Q value = 0.84

Table S751.  Gene #76: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
LILRB5 MUTATED 4 10 5
LILRB5 WILD-TYPE 99 76 96
'LILRB5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S752.  Gene #76: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
LILRB5 MUTATED 6 7 4 2
LILRB5 WILD-TYPE 77 74 74 46
'LILRB5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S753.  Gene #76: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
LILRB5 MUTATED 3 5 8 0 2
LILRB5 WILD-TYPE 58 67 83 16 38
'LILRB5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.986 (Fisher's exact test), Q value = 1

Table S754.  Gene #76: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
LILRB5 MUTATED 7 4 5 2
LILRB5 WILD-TYPE 92 67 69 34
'LILRB5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.95

Table S755.  Gene #76: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
LILRB5 MUTATED 8 4 6
LILRB5 WILD-TYPE 67 85 99
'LILRB5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S756.  Gene #76: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
LILRB5 MUTATED 11 2 3 2
LILRB5 WILD-TYPE 113 54 58 26
'C10ORF72 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.86

Table S757.  Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
C10ORF72 MUTATED 4 12 4
C10ORF72 WILD-TYPE 72 97 101
'C10ORF72 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.92

Table S758.  Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
C10ORF72 MUTATED 8 10 2
C10ORF72 WILD-TYPE 90 106 74
'C10ORF72 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.92

Table S759.  Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
C10ORF72 MUTATED 6 2 2 0
C10ORF72 WILD-TYPE 44 49 40 26
'C10ORF72 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0425 (Fisher's exact test), Q value = 0.75

Table S760.  Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
C10ORF72 MUTATED 3 6 1 0
C10ORF72 WILD-TYPE 24 52 34 49

Figure S55.  Get High-res Image Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C10ORF72 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S761.  Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
C10ORF72 MUTATED 9 6 5
C10ORF72 WILD-TYPE 94 80 96
'C10ORF72 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S762.  Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
C10ORF72 MUTATED 8 6 5 1
C10ORF72 WILD-TYPE 75 75 73 47
'C10ORF72 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S763.  Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
C10ORF72 MUTATED 5 7 6 0 1
C10ORF72 WILD-TYPE 56 65 85 16 39
'C10ORF72 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.91

Table S764.  Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
C10ORF72 MUTATED 5 9 4 1
C10ORF72 WILD-TYPE 94 62 70 35
'C10ORF72 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S765.  Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
C10ORF72 MUTATED 5 5 9
C10ORF72 WILD-TYPE 70 84 96
'C10ORF72 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S766.  Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
C10ORF72 MUTATED 9 2 7 1
C10ORF72 WILD-TYPE 115 54 54 27
'C3ORF71 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S767.  Gene #78: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
C3ORF71 MUTATED 0 2 2
C3ORF71 WILD-TYPE 76 107 103
'C3ORF71 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.96

Table S768.  Gene #78: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
C3ORF71 MUTATED 0 2 2
C3ORF71 WILD-TYPE 98 114 74
'C3ORF71 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S769.  Gene #78: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
C3ORF71 MUTATED 1 2 1 0
C3ORF71 WILD-TYPE 49 49 41 26
'C3ORF71 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S770.  Gene #78: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
C3ORF71 MUTATED 1 2 1 0
C3ORF71 WILD-TYPE 26 56 34 49
'C3ORF71 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.87

Table S771.  Gene #78: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
C3ORF71 MUTATED 0 1 3
C3ORF71 WILD-TYPE 103 85 98
'C3ORF71 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.86

Table S772.  Gene #78: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
C3ORF71 MUTATED 0 1 3 0
C3ORF71 WILD-TYPE 83 80 75 48
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.93

Table S773.  Gene #78: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
C3ORF71 MUTATED 0 2 1 1 0
C3ORF71 WILD-TYPE 61 70 90 15 40
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.84

Table S774.  Gene #78: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
C3ORF71 MUTATED 0 3 1 0
C3ORF71 WILD-TYPE 99 68 73 36
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S775.  Gene #78: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
C3ORF71 MUTATED 1 2 1
C3ORF71 WILD-TYPE 74 87 104
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.87

Table S776.  Gene #78: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
C3ORF71 MUTATED 1 0 3 0
C3ORF71 WILD-TYPE 123 56 58 28
'ZNF589 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S777.  Gene #79: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ZNF589 MUTATED 1 1 1
ZNF589 WILD-TYPE 75 108 104
'ZNF589 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S778.  Gene #79: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ZNF589 MUTATED 1 2 0
ZNF589 WILD-TYPE 97 114 76
'ZNF589 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S779.  Gene #79: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ZNF589 MUTATED 2 1 0
ZNF589 WILD-TYPE 101 85 101
'ZNF589 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.92

Table S780.  Gene #79: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ZNF589 MUTATED 0 2 0 1
ZNF589 WILD-TYPE 83 79 78 47
'ZNF589 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S781.  Gene #79: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
ZNF589 MUTATED 1 0 2 0 0
ZNF589 WILD-TYPE 60 72 89 16 40
'ZNF589 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S782.  Gene #79: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ZNF589 MUTATED 1 0 2 0
ZNF589 WILD-TYPE 98 71 72 36
'ZNF589 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.95

Table S783.  Gene #79: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
ZNF589 MUTATED 2 0 1
ZNF589 WILD-TYPE 73 89 104
'ZNF589 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S784.  Gene #79: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
ZNF589 MUTATED 3 0 0 0
ZNF589 WILD-TYPE 121 56 61 28
'DSP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0828 (Fisher's exact test), Q value = 0.84

Table S785.  Gene #80: 'DSP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
DSP MUTATED 22 22 16
DSP WILD-TYPE 54 87 89
'DSP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S786.  Gene #80: 'DSP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
DSP MUTATED 24 21 15
DSP WILD-TYPE 74 95 61
'DSP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0979 (Fisher's exact test), Q value = 0.84

Table S787.  Gene #80: 'DSP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
DSP MUTATED 9 11 16 4
DSP WILD-TYPE 41 40 26 22
'DSP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S788.  Gene #80: 'DSP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
DSP MUTATED 7 13 7 13
DSP WILD-TYPE 20 45 28 36
'DSP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.93

Table S789.  Gene #80: 'DSP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
DSP MUTATED 20 23 17
DSP WILD-TYPE 83 63 84
'DSP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S790.  Gene #80: 'DSP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
DSP MUTATED 18 18 13 11
DSP WILD-TYPE 65 63 65 37
'DSP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S791.  Gene #80: 'DSP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
DSP MUTATED 15 14 20 1 8
DSP WILD-TYPE 46 58 71 15 32
'DSP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S792.  Gene #80: 'DSP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
DSP MUTATED 22 16 14 6
DSP WILD-TYPE 77 55 60 30
'DSP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S793.  Gene #80: 'DSP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
DSP MUTATED 17 17 24
DSP WILD-TYPE 58 72 81
'DSP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.96

Table S794.  Gene #80: 'DSP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
DSP MUTATED 33 11 9 5
DSP WILD-TYPE 91 45 52 23
'ZZZ3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S795.  Gene #81: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ZZZ3 MUTATED 1 0 2
ZZZ3 WILD-TYPE 75 109 103
'ZZZ3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S796.  Gene #81: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ZZZ3 MUTATED 1 1 1
ZZZ3 WILD-TYPE 97 115 75
'ZZZ3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S797.  Gene #81: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ZZZ3 MUTATED 2 0 1
ZZZ3 WILD-TYPE 101 86 100
'ZZZ3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S798.  Gene #81: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ZZZ3 MUTATED 2 0 1 0
ZZZ3 WILD-TYPE 81 81 77 48
'ZZZ3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S799.  Gene #81: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
ZZZ3 MUTATED 0 1 1 0 1
ZZZ3 WILD-TYPE 61 71 90 16 39
'ZZZ3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S800.  Gene #81: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ZZZ3 MUTATED 1 1 0 1
ZZZ3 WILD-TYPE 98 70 74 35
'ZZZ3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S801.  Gene #81: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
ZZZ3 MUTATED 0 2 1
ZZZ3 WILD-TYPE 75 87 104
'ZZZ3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S802.  Gene #81: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
ZZZ3 MUTATED 1 0 1 1
ZZZ3 WILD-TYPE 123 56 60 27
'MCART2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S803.  Gene #82: 'MCART2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MCART2 MUTATED 3 5 2
MCART2 WILD-TYPE 73 104 103
'MCART2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S804.  Gene #82: 'MCART2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MCART2 MUTATED 5 4 1
MCART2 WILD-TYPE 93 112 75
'MCART2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S805.  Gene #82: 'MCART2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
MCART2 MUTATED 2 1 2 0
MCART2 WILD-TYPE 48 50 40 26
'MCART2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S806.  Gene #82: 'MCART2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MCART2 MUTATED 1 2 1 1
MCART2 WILD-TYPE 26 56 34 48
'MCART2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.92

Table S807.  Gene #82: 'MCART2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MCART2 MUTATED 1 4 5
MCART2 WILD-TYPE 102 82 96
'MCART2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S808.  Gene #82: 'MCART2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MCART2 MUTATED 3 2 3 2
MCART2 WILD-TYPE 80 79 75 46
'MCART2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S809.  Gene #82: 'MCART2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
MCART2 MUTATED 2 4 2 0 1
MCART2 WILD-TYPE 59 68 89 16 39
'MCART2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S810.  Gene #82: 'MCART2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MCART2 MUTATED 5 2 1 1
MCART2 WILD-TYPE 94 69 73 35
'MCART2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S811.  Gene #82: 'MCART2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
MCART2 MUTATED 3 3 3
MCART2 WILD-TYPE 72 86 102
'MCART2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.99

Table S812.  Gene #82: 'MCART2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
MCART2 MUTATED 3 4 1 1
MCART2 WILD-TYPE 121 52 60 27
'CD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S813.  Gene #83: 'CD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CD2 MUTATED 5 7 10
CD2 WILD-TYPE 71 102 95
'CD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S814.  Gene #83: 'CD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CD2 MUTATED 9 8 5
CD2 WILD-TYPE 89 108 71
'CD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S815.  Gene #83: 'CD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
CD2 MUTATED 4 5 3 1
CD2 WILD-TYPE 46 46 39 25
'CD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S816.  Gene #83: 'CD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CD2 MUTATED 2 4 2 5
CD2 WILD-TYPE 25 54 33 44
'CD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S817.  Gene #83: 'CD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CD2 MUTATED 7 7 8
CD2 WILD-TYPE 96 79 93
'CD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S818.  Gene #83: 'CD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CD2 MUTATED 7 5 6 4
CD2 WILD-TYPE 76 76 72 44
'CD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S819.  Gene #83: 'CD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
CD2 MUTATED 5 4 8 1 3
CD2 WILD-TYPE 56 68 83 15 37
'CD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.988 (Fisher's exact test), Q value = 1

Table S820.  Gene #83: 'CD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
CD2 MUTATED 7 5 6 3
CD2 WILD-TYPE 92 66 68 33
'CD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S821.  Gene #83: 'CD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
CD2 MUTATED 5 7 9
CD2 WILD-TYPE 70 82 96
'CD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S822.  Gene #83: 'CD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
CD2 MUTATED 12 3 3 3
CD2 WILD-TYPE 112 53 58 25
'CD209 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S823.  Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CD209 MUTATED 3 6 3
CD209 WILD-TYPE 73 103 102
'CD209 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 0.75

Table S824.  Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CD209 MUTATED 7 5 0
CD209 WILD-TYPE 91 111 76

Figure S56.  Get High-res Image Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CD209 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S825.  Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
CD209 MUTATED 2 0 2 1
CD209 WILD-TYPE 48 51 40 25
'CD209 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S826.  Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CD209 MUTATED 1 2 1 1
CD209 WILD-TYPE 26 56 34 48
'CD209 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0623 (Fisher's exact test), Q value = 0.83

Table S827.  Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CD209 MUTATED 8 1 3
CD209 WILD-TYPE 95 85 98
'CD209 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S828.  Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CD209 MUTATED 6 2 2 2
CD209 WILD-TYPE 77 79 76 46
'CD209 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S829.  Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
CD209 MUTATED 1 4 6 0 1
CD209 WILD-TYPE 60 68 85 16 39
'CD209 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S830.  Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
CD209 MUTATED 6 3 3 0
CD209 WILD-TYPE 93 68 71 36
'CD209 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S831.  Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
CD209 MUTATED 4 3 5
CD209 WILD-TYPE 71 86 100
'CD209 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S832.  Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
CD209 MUTATED 6 4 2 0
CD209 WILD-TYPE 118 52 59 28
'C2ORF16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00309 (Fisher's exact test), Q value = 0.36

Table S833.  Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
C2ORF16 MUTATED 13 13 3
C2ORF16 WILD-TYPE 63 96 102

Figure S57.  Get High-res Image Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C2ORF16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S834.  Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
C2ORF16 MUTATED 11 12 6
C2ORF16 WILD-TYPE 87 104 70
'C2ORF16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S835.  Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
C2ORF16 MUTATED 4 8 4 2
C2ORF16 WILD-TYPE 46 43 38 24
'C2ORF16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.078 (Fisher's exact test), Q value = 0.84

Table S836.  Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
C2ORF16 MUTATED 0 8 2 8
C2ORF16 WILD-TYPE 27 50 33 41
'C2ORF16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.9

Table S837.  Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
C2ORF16 MUTATED 11 12 6
C2ORF16 WILD-TYPE 92 74 95
'C2ORF16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.86

Table S838.  Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
C2ORF16 MUTATED 4 10 7 8
C2ORF16 WILD-TYPE 79 71 71 40
'C2ORF16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.96

Table S839.  Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
C2ORF16 MUTATED 8 3 11 1 5
C2ORF16 WILD-TYPE 53 69 80 15 35
'C2ORF16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S840.  Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
C2ORF16 MUTATED 10 5 10 3
C2ORF16 WILD-TYPE 89 66 64 33
'C2ORF16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.6

Table S841.  Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
C2ORF16 MUTATED 9 3 16
C2ORF16 WILD-TYPE 66 86 89

Figure S58.  Get High-res Image Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C2ORF16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.95

Table S842.  Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
C2ORF16 MUTATED 18 3 5 2
C2ORF16 WILD-TYPE 106 53 56 26
'GLRB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S843.  Gene #86: 'GLRB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
GLRB MUTATED 10 11 9
GLRB WILD-TYPE 66 98 96
'GLRB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S844.  Gene #86: 'GLRB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
GLRB MUTATED 11 9 10
GLRB WILD-TYPE 87 107 66
'GLRB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S845.  Gene #86: 'GLRB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
GLRB MUTATED 5 5 5 1
GLRB WILD-TYPE 45 46 37 25
'GLRB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.88

Table S846.  Gene #86: 'GLRB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
GLRB MUTATED 5 4 1 6
GLRB WILD-TYPE 22 54 34 43
'GLRB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.87

Table S847.  Gene #86: 'GLRB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
GLRB MUTATED 14 10 6
GLRB WILD-TYPE 89 76 95
'GLRB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.96

Table S848.  Gene #86: 'GLRB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
GLRB MUTATED 11 11 5 3
GLRB WILD-TYPE 72 70 73 45
'GLRB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S849.  Gene #86: 'GLRB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
GLRB MUTATED 8 9 9 0 3
GLRB WILD-TYPE 53 63 82 16 37
'GLRB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.86

Table S850.  Gene #86: 'GLRB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
GLRB MUTATED 16 7 4 2
GLRB WILD-TYPE 83 64 70 34
'GLRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S851.  Gene #86: 'GLRB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
GLRB MUTATED 6 9 14
GLRB WILD-TYPE 69 80 91
'GLRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.92

Table S852.  Gene #86: 'GLRB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
GLRB MUTATED 19 4 4 2
GLRB WILD-TYPE 105 52 57 26
'PKDREJ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.97 (Fisher's exact test), Q value = 1

Table S853.  Gene #87: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PKDREJ MUTATED 7 12 11
PKDREJ WILD-TYPE 69 97 94
'PKDREJ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S854.  Gene #87: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PKDREJ MUTATED 8 15 7
PKDREJ WILD-TYPE 90 101 69
'PKDREJ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S855.  Gene #87: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
PKDREJ MUTATED 7 5 4 3
PKDREJ WILD-TYPE 43 46 38 23
'PKDREJ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S856.  Gene #87: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PKDREJ MUTATED 3 6 5 5
PKDREJ WILD-TYPE 24 52 30 44
'PKDREJ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.98

Table S857.  Gene #87: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PKDREJ MUTATED 7 11 12
PKDREJ WILD-TYPE 96 75 89
'PKDREJ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S858.  Gene #87: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PKDREJ MUTATED 10 9 8 3
PKDREJ WILD-TYPE 73 72 70 45
'PKDREJ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.92

Table S859.  Gene #87: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
PKDREJ MUTATED 10 5 9 3 2
PKDREJ WILD-TYPE 51 67 82 13 38
'PKDREJ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S860.  Gene #87: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
PKDREJ MUTATED 12 7 8 2
PKDREJ WILD-TYPE 87 64 66 34
'PKDREJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.94

Table S861.  Gene #87: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
PKDREJ MUTATED 9 5 12
PKDREJ WILD-TYPE 66 84 93
'PKDREJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S862.  Gene #87: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
PKDREJ MUTATED 14 4 6 2
PKDREJ WILD-TYPE 110 52 55 26
'PTPRT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S863.  Gene #88: 'PTPRT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PTPRT MUTATED 23 35 28
PTPRT WILD-TYPE 53 74 77
'PTPRT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0478 (Fisher's exact test), Q value = 0.78

Table S864.  Gene #88: 'PTPRT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PTPRT MUTATED 38 31 17
PTPRT WILD-TYPE 60 85 59

Figure S59.  Get High-res Image Gene #88: 'PTPRT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTPRT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.93

Table S865.  Gene #88: 'PTPRT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
PTPRT MUTATED 17 17 16 4
PTPRT WILD-TYPE 33 34 26 22
'PTPRT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S866.  Gene #88: 'PTPRT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PTPRT MUTATED 7 19 12 16
PTPRT WILD-TYPE 20 39 23 33
'PTPRT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S867.  Gene #88: 'PTPRT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PTPRT MUTATED 30 28 28
PTPRT WILD-TYPE 73 58 73
'PTPRT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S868.  Gene #88: 'PTPRT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PTPRT MUTATED 24 23 26 13
PTPRT WILD-TYPE 59 58 52 35
'PTPRT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S869.  Gene #88: 'PTPRT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
PTPRT MUTATED 21 19 29 6 9
PTPRT WILD-TYPE 40 53 62 10 31
'PTPRT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0778 (Fisher's exact test), Q value = 0.84

Table S870.  Gene #88: 'PTPRT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
PTPRT MUTATED 39 19 19 7
PTPRT WILD-TYPE 60 52 55 29
'PTPRT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0826 (Fisher's exact test), Q value = 0.84

Table S871.  Gene #88: 'PTPRT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
PTPRT MUTATED 24 20 39
PTPRT WILD-TYPE 51 69 66
'PTPRT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0296 (Fisher's exact test), Q value = 0.75

Table S872.  Gene #88: 'PTPRT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
PTPRT MUTATED 49 12 17 5
PTPRT WILD-TYPE 75 44 44 23

Figure S60.  Get High-res Image Gene #88: 'PTPRT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAM55C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S873.  Gene #89: 'FAM55C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
FAM55C MUTATED 1 3 2
FAM55C WILD-TYPE 75 106 103
'FAM55C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S874.  Gene #89: 'FAM55C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
FAM55C MUTATED 2 2 2
FAM55C WILD-TYPE 96 114 74
'FAM55C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S875.  Gene #89: 'FAM55C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
FAM55C MUTATED 1 1 1 0
FAM55C WILD-TYPE 49 50 41 26
'FAM55C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S876.  Gene #89: 'FAM55C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
FAM55C MUTATED 1 0 1 1
FAM55C WILD-TYPE 26 58 34 48
'FAM55C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S877.  Gene #89: 'FAM55C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
FAM55C MUTATED 2 1 3
FAM55C WILD-TYPE 101 85 98
'FAM55C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S878.  Gene #89: 'FAM55C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
FAM55C MUTATED 3 2 0 1
FAM55C WILD-TYPE 80 79 78 47
'FAM55C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.93

Table S879.  Gene #89: 'FAM55C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
FAM55C MUTATED 0 3 2 1 0
FAM55C WILD-TYPE 61 69 89 15 40
'FAM55C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S880.  Gene #89: 'FAM55C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
FAM55C MUTATED 3 2 1 0
FAM55C WILD-TYPE 96 69 73 36
'FAM55C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S881.  Gene #89: 'FAM55C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
FAM55C MUTATED 2 2 2
FAM55C WILD-TYPE 73 87 103
'FAM55C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S882.  Gene #89: 'FAM55C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
FAM55C MUTATED 2 3 1 0
FAM55C WILD-TYPE 122 53 60 28
'NUDT4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S883.  Gene #90: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
NUDT4 MUTATED 2 2 1
NUDT4 WILD-TYPE 74 107 104
'NUDT4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S884.  Gene #90: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
NUDT4 MUTATED 3 2 0
NUDT4 WILD-TYPE 95 114 76
'NUDT4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S885.  Gene #90: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
NUDT4 MUTATED 3 2 0 0
NUDT4 WILD-TYPE 47 49 42 26
'NUDT4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.95

Table S886.  Gene #90: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
NUDT4 MUTATED 2 2 1 0
NUDT4 WILD-TYPE 25 56 34 49
'NUDT4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S887.  Gene #90: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
NUDT4 MUTATED 1 1 3
NUDT4 WILD-TYPE 102 85 98
'NUDT4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S888.  Gene #90: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
NUDT4 MUTATED 2 1 2 0
NUDT4 WILD-TYPE 81 80 76 48
'NUDT4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.9

Table S889.  Gene #90: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
NUDT4 MUTATED 3 1 0 0 1
NUDT4 WILD-TYPE 58 71 91 16 39
'NUDT4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.93

Table S890.  Gene #90: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
NUDT4 MUTATED 0 2 2 1
NUDT4 WILD-TYPE 99 69 72 35
'NUDT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S891.  Gene #90: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
NUDT4 MUTATED 1 1 3
NUDT4 WILD-TYPE 74 88 102
'NUDT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S892.  Gene #90: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
NUDT4 MUTATED 1 1 2 1
NUDT4 WILD-TYPE 123 55 59 27
'MYPOP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0833 (Fisher's exact test), Q value = 0.84

Table S893.  Gene #91: 'MYPOP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MYPOP MUTATED 3 0 4
MYPOP WILD-TYPE 73 109 101
'MYPOP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S894.  Gene #91: 'MYPOP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MYPOP MUTATED 1 3 3
MYPOP WILD-TYPE 97 113 73
'MYPOP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S895.  Gene #91: 'MYPOP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
MYPOP MUTATED 1 1 1 1
MYPOP WILD-TYPE 49 50 41 25
'MYPOP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S896.  Gene #91: 'MYPOP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MYPOP MUTATED 1 0 1 2
MYPOP WILD-TYPE 26 58 34 47
'MYPOP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S897.  Gene #91: 'MYPOP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MYPOP MUTATED 2 2 3
MYPOP WILD-TYPE 101 84 98
'MYPOP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S898.  Gene #91: 'MYPOP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MYPOP MUTATED 2 1 3 1
MYPOP WILD-TYPE 81 80 75 47
'MYPOP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S899.  Gene #91: 'MYPOP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
MYPOP MUTATED 1 1 4 0 1
MYPOP WILD-TYPE 60 71 87 16 39
'MYPOP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.87

Table S900.  Gene #91: 'MYPOP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MYPOP MUTATED 4 0 1 2
MYPOP WILD-TYPE 95 71 73 34
'MYPOP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S901.  Gene #91: 'MYPOP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
MYPOP MUTATED 1 3 3
MYPOP WILD-TYPE 74 86 102
'MYPOP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S902.  Gene #91: 'MYPOP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
MYPOP MUTATED 4 1 2 0
MYPOP WILD-TYPE 120 55 59 28
'MLL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S903.  Gene #92: 'MLL4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MLL4 MUTATED 11 11 10
MLL4 WILD-TYPE 65 98 95
'MLL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0644 (Fisher's exact test), Q value = 0.84

Table S904.  Gene #92: 'MLL4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MLL4 MUTATED 17 9 6
MLL4 WILD-TYPE 81 107 70
'MLL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S905.  Gene #92: 'MLL4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
MLL4 MUTATED 6 5 6 2
MLL4 WILD-TYPE 44 46 36 24
'MLL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S906.  Gene #92: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MLL4 MUTATED 4 7 2 6
MLL4 WILD-TYPE 23 51 33 43
'MLL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0434 (Fisher's exact test), Q value = 0.75

Table S907.  Gene #92: 'MLL4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MLL4 MUTATED 18 7 7
MLL4 WILD-TYPE 85 79 94

Figure S61.  Get High-res Image Gene #92: 'MLL4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MLL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S908.  Gene #92: 'MLL4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MLL4 MUTATED 12 9 7 4
MLL4 WILD-TYPE 71 72 71 44
'MLL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S909.  Gene #92: 'MLL4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
MLL4 MUTATED 6 7 9 2 7
MLL4 WILD-TYPE 55 65 82 14 33
'MLL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S910.  Gene #92: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MLL4 MUTATED 9 8 8 6
MLL4 WILD-TYPE 90 63 66 30
'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.95

Table S911.  Gene #92: 'MLL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
MLL4 MUTATED 8 7 16
MLL4 WILD-TYPE 67 82 89
'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.99

Table S912.  Gene #92: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
MLL4 MUTATED 17 4 5 5
MLL4 WILD-TYPE 107 52 56 23
'MMP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.93

Table S913.  Gene #93: 'MMP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MMP1 MUTATED 1 7 6
MMP1 WILD-TYPE 75 102 99
'MMP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.87

Table S914.  Gene #93: 'MMP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MMP1 MUTATED 8 3 3
MMP1 WILD-TYPE 90 113 73
'MMP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S915.  Gene #93: 'MMP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
MMP1 MUTATED 1 2 2 0
MMP1 WILD-TYPE 49 49 40 26
'MMP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S916.  Gene #93: 'MMP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MMP1 MUTATED 1 1 1 2
MMP1 WILD-TYPE 26 57 34 47
'MMP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S917.  Gene #93: 'MMP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MMP1 MUTATED 6 3 5
MMP1 WILD-TYPE 97 83 96
'MMP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S918.  Gene #93: 'MMP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MMP1 MUTATED 5 2 4 3
MMP1 WILD-TYPE 78 79 74 45
'MMP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S919.  Gene #93: 'MMP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
MMP1 MUTATED 4 5 4 1 0
MMP1 WILD-TYPE 57 67 87 15 40
'MMP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0593 (Fisher's exact test), Q value = 0.82

Table S920.  Gene #93: 'MMP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MMP1 MUTATED 6 7 1 0
MMP1 WILD-TYPE 93 64 73 36
'MMP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S921.  Gene #93: 'MMP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
MMP1 MUTATED 4 4 5
MMP1 WILD-TYPE 71 85 100
'MMP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S922.  Gene #93: 'MMP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
MMP1 MUTATED 6 4 3 0
MMP1 WILD-TYPE 118 52 58 28
'THEMIS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.036 (Fisher's exact test), Q value = 0.75

Table S923.  Gene #94: 'THEMIS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
THEMIS MUTATED 13 15 6
THEMIS WILD-TYPE 63 94 99

Figure S62.  Get High-res Image Gene #94: 'THEMIS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'THEMIS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0477 (Fisher's exact test), Q value = 0.78

Table S924.  Gene #94: 'THEMIS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
THEMIS MUTATED 18 9 7
THEMIS WILD-TYPE 80 107 69

Figure S63.  Get High-res Image Gene #94: 'THEMIS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'THEMIS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S925.  Gene #94: 'THEMIS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
THEMIS MUTATED 6 6 7 1
THEMIS WILD-TYPE 44 45 35 25
'THEMIS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S926.  Gene #94: 'THEMIS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
THEMIS MUTATED 4 7 2 7
THEMIS WILD-TYPE 23 51 33 42
'THEMIS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S927.  Gene #94: 'THEMIS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
THEMIS MUTATED 11 13 10
THEMIS WILD-TYPE 92 73 91
'THEMIS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S928.  Gene #94: 'THEMIS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
THEMIS MUTATED 13 7 7 7
THEMIS WILD-TYPE 70 74 71 41
'THEMIS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.93

Table S929.  Gene #94: 'THEMIS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
THEMIS MUTATED 6 9 12 3 1
THEMIS WILD-TYPE 55 63 79 13 39
'THEMIS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.92

Table S930.  Gene #94: 'THEMIS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
THEMIS MUTATED 12 11 7 1
THEMIS WILD-TYPE 87 60 67 35
'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S931.  Gene #94: 'THEMIS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
THEMIS MUTATED 9 7 14
THEMIS WILD-TYPE 66 82 91
'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S932.  Gene #94: 'THEMIS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
THEMIS MUTATED 17 6 6 1
THEMIS WILD-TYPE 107 50 55 27
'ACO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0718 (Fisher's exact test), Q value = 0.84

Table S933.  Gene #95: 'ACO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ACO1 MUTATED 5 1 2
ACO1 WILD-TYPE 71 108 103
'ACO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S934.  Gene #95: 'ACO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ACO1 MUTATED 2 3 3
ACO1 WILD-TYPE 96 113 73
'ACO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 0.75

Table S935.  Gene #95: 'ACO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
ACO1 MUTATED 0 0 2 2
ACO1 WILD-TYPE 50 51 40 24

Figure S64.  Get High-res Image Gene #95: 'ACO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ACO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S936.  Gene #95: 'ACO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ACO1 MUTATED 0 1 1 2
ACO1 WILD-TYPE 27 57 34 47
'ACO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S937.  Gene #95: 'ACO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ACO1 MUTATED 4 2 2
ACO1 WILD-TYPE 99 84 99
'ACO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S938.  Gene #95: 'ACO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ACO1 MUTATED 2 3 1 2
ACO1 WILD-TYPE 81 78 77 46
'ACO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0611 (Fisher's exact test), Q value = 0.82

Table S939.  Gene #95: 'ACO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
ACO1 MUTATED 0 1 6 1 0
ACO1 WILD-TYPE 61 71 85 15 40
'ACO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.84

Table S940.  Gene #95: 'ACO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ACO1 MUTATED 6 0 2 0
ACO1 WILD-TYPE 93 71 72 36
'ACO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S941.  Gene #95: 'ACO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
ACO1 MUTATED 1 1 4
ACO1 WILD-TYPE 74 88 101
'ACO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S942.  Gene #95: 'ACO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
ACO1 MUTATED 4 1 1 0
ACO1 WILD-TYPE 120 55 60 28
'MUC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S943.  Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MUC7 MUTATED 6 6 5
MUC7 WILD-TYPE 70 103 100
'MUC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S944.  Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MUC7 MUTATED 7 6 4
MUC7 WILD-TYPE 91 110 72
'MUC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S945.  Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
MUC7 MUTATED 3 2 2 1
MUC7 WILD-TYPE 47 49 40 25
'MUC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S946.  Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MUC7 MUTATED 1 2 1 4
MUC7 WILD-TYPE 26 56 34 45
'MUC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.9

Table S947.  Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MUC7 MUTATED 6 8 3
MUC7 WILD-TYPE 97 78 98
'MUC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.95

Table S948.  Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MUC7 MUTATED 8 5 2 2
MUC7 WILD-TYPE 75 76 76 46
'MUC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.038 (Fisher's exact test), Q value = 0.75

Table S949.  Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
MUC7 MUTATED 7 1 6 0 0
MUC7 WILD-TYPE 54 71 85 16 40

Figure S65.  Get High-res Image Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MUC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.93

Table S950.  Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MUC7 MUTATED 6 2 6 0
MUC7 WILD-TYPE 93 69 68 36
'MUC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00739 (Fisher's exact test), Q value = 0.44

Table S951.  Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
MUC7 MUTATED 6 0 8
MUC7 WILD-TYPE 69 89 97

Figure S66.  Get High-res Image Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MUC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.97

Table S952.  Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
MUC7 MUTATED 10 2 2 0
MUC7 WILD-TYPE 114 54 59 28
'TP63 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S953.  Gene #97: 'TP63 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
TP63 MUTATED 14 18 18
TP63 WILD-TYPE 62 91 87
'TP63 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0788 (Fisher's exact test), Q value = 0.84

Table S954.  Gene #97: 'TP63 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
TP63 MUTATED 24 16 10
TP63 WILD-TYPE 74 100 66
'TP63 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.56

Table S955.  Gene #97: 'TP63 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
TP63 MUTATED 12 4 11 1
TP63 WILD-TYPE 38 47 31 25

Figure S67.  Get High-res Image Gene #97: 'TP63 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TP63 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S956.  Gene #97: 'TP63 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
TP63 MUTATED 6 10 7 5
TP63 WILD-TYPE 21 48 28 44
'TP63 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.86

Table S957.  Gene #97: 'TP63 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
TP63 MUTATED 24 13 13
TP63 WILD-TYPE 79 73 88
'TP63 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S958.  Gene #97: 'TP63 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
TP63 MUTATED 15 11 13 11
TP63 WILD-TYPE 68 70 65 37
'TP63 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S959.  Gene #97: 'TP63 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
TP63 MUTATED 9 8 19 2 8
TP63 WILD-TYPE 52 64 72 14 32
'TP63 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S960.  Gene #97: 'TP63 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
TP63 MUTATED 17 14 11 4
TP63 WILD-TYPE 82 57 63 32
'TP63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.95

Table S961.  Gene #97: 'TP63 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
TP63 MUTATED 11 11 22
TP63 WILD-TYPE 64 78 83
'TP63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S962.  Gene #97: 'TP63 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
TP63 MUTATED 25 7 8 4
TP63 WILD-TYPE 99 49 53 24
'APCS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S963.  Gene #98: 'APCS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
APCS MUTATED 3 6 4
APCS WILD-TYPE 73 103 101
'APCS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S964.  Gene #98: 'APCS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
APCS MUTATED 6 3 4
APCS WILD-TYPE 92 113 72
'APCS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S965.  Gene #98: 'APCS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
APCS MUTATED 2 3 1 2
APCS WILD-TYPE 48 48 41 24
'APCS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S966.  Gene #98: 'APCS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
APCS MUTATED 1 3 2 2
APCS WILD-TYPE 26 55 33 47
'APCS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S967.  Gene #98: 'APCS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
APCS MUTATED 5 2 6
APCS WILD-TYPE 98 84 95
'APCS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S968.  Gene #98: 'APCS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
APCS MUTATED 5 2 5 1
APCS WILD-TYPE 78 79 73 47
'APCS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.98 (Fisher's exact test), Q value = 1

Table S969.  Gene #98: 'APCS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
APCS MUTATED 3 3 4 1 2
APCS WILD-TYPE 58 69 87 15 38
'APCS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S970.  Gene #98: 'APCS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
APCS MUTATED 5 5 1 2
APCS WILD-TYPE 94 66 73 34
'APCS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S971.  Gene #98: 'APCS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
APCS MUTATED 5 4 4
APCS WILD-TYPE 70 85 101
'APCS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S972.  Gene #98: 'APCS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
APCS MUTATED 6 1 5 1
APCS WILD-TYPE 118 55 56 27
'GPX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S973.  Gene #99: 'GPX5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
GPX5 MUTATED 6 6 6
GPX5 WILD-TYPE 70 103 99
'GPX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.75

Table S974.  Gene #99: 'GPX5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
GPX5 MUTATED 11 3 4
GPX5 WILD-TYPE 87 113 72

Figure S68.  Get High-res Image Gene #99: 'GPX5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GPX5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S975.  Gene #99: 'GPX5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
GPX5 MUTATED 2 1 4 1
GPX5 WILD-TYPE 48 50 38 25
'GPX5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S976.  Gene #99: 'GPX5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
GPX5 MUTATED 1 4 1 2
GPX5 WILD-TYPE 26 54 34 47
'GPX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S977.  Gene #99: 'GPX5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
GPX5 MUTATED 7 6 5
GPX5 WILD-TYPE 96 80 96
'GPX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0313 (Fisher's exact test), Q value = 0.75

Table S978.  Gene #99: 'GPX5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
GPX5 MUTATED 11 3 2 2
GPX5 WILD-TYPE 72 78 76 46

Figure S69.  Get High-res Image Gene #99: 'GPX5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.88

Table S979.  Gene #99: 'GPX5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
GPX5 MUTATED 2 7 7 0 0
GPX5 WILD-TYPE 59 65 84 16 40
'GPX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S980.  Gene #99: 'GPX5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
GPX5 MUTATED 7 4 5 0
GPX5 WILD-TYPE 92 67 69 36
'GPX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S981.  Gene #99: 'GPX5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
GPX5 MUTATED 5 5 6
GPX5 WILD-TYPE 70 84 99
'GPX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.98

Table S982.  Gene #99: 'GPX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
GPX5 MUTATED 9 5 2 0
GPX5 WILD-TYPE 115 51 59 28
'PDK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S983.  Gene #100: 'PDK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
PDK4 MUTATED 2 3 2
PDK4 WILD-TYPE 74 106 103
'PDK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.95

Table S984.  Gene #100: 'PDK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
PDK4 MUTATED 3 4 0
PDK4 WILD-TYPE 95 112 76
'PDK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 0.72

Table S985.  Gene #100: 'PDK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
PDK4 MUTATED 4 0 0 0
PDK4 WILD-TYPE 46 51 42 26

Figure S70.  Get High-res Image Gene #100: 'PDK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PDK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.86

Table S986.  Gene #100: 'PDK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
PDK4 MUTATED 2 2 0 0
PDK4 WILD-TYPE 25 56 35 49
'PDK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S987.  Gene #100: 'PDK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
PDK4 MUTATED 4 1 2
PDK4 WILD-TYPE 99 85 99
'PDK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.95

Table S988.  Gene #100: 'PDK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
PDK4 MUTATED 3 0 3 1
PDK4 WILD-TYPE 80 81 75 47
'PDK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S989.  Gene #100: 'PDK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
PDK4 MUTATED 2 3 1 0 0
PDK4 WILD-TYPE 59 69 90 16 40
'PDK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0525 (Fisher's exact test), Q value = 0.79

Table S990.  Gene #100: 'PDK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
PDK4 MUTATED 0 4 2 0
PDK4 WILD-TYPE 99 67 72 36
'PDK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S991.  Gene #100: 'PDK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
PDK4 MUTATED 2 2 2
PDK4 WILD-TYPE 73 87 103
'PDK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S992.  Gene #100: 'PDK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
PDK4 MUTATED 2 1 3 0
PDK4 WILD-TYPE 122 55 58 28
'EPS8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.9

Table S993.  Gene #101: 'EPS8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
EPS8 MUTATED 4 2 1
EPS8 WILD-TYPE 72 107 104
'EPS8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S994.  Gene #101: 'EPS8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
EPS8 MUTATED 3 2 2
EPS8 WILD-TYPE 95 114 74
'EPS8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S995.  Gene #101: 'EPS8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
EPS8 MUTATED 1 2 1 1
EPS8 WILD-TYPE 49 49 41 25
'EPS8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S996.  Gene #101: 'EPS8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
EPS8 MUTATED 0 3 1 1
EPS8 WILD-TYPE 27 55 34 48
'EPS8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.96

Table S997.  Gene #101: 'EPS8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
EPS8 MUTATED 2 4 1
EPS8 WILD-TYPE 101 82 100
'EPS8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S998.  Gene #101: 'EPS8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
EPS8 MUTATED 1 3 1 2
EPS8 WILD-TYPE 82 78 77 46
'EPS8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S999.  Gene #101: 'EPS8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
EPS8 MUTATED 1 2 3 0 1
EPS8 WILD-TYPE 60 70 88 16 39
'EPS8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S1000.  Gene #101: 'EPS8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
EPS8 MUTATED 4 1 1 1
EPS8 WILD-TYPE 95 70 73 35
'EPS8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S1001.  Gene #101: 'EPS8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
EPS8 MUTATED 2 1 4
EPS8 WILD-TYPE 73 88 101
'EPS8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S1002.  Gene #101: 'EPS8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
EPS8 MUTATED 3 2 1 1
EPS8 WILD-TYPE 121 54 60 27
'LUZP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S1003.  Gene #102: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
LUZP1 MUTATED 3 1 2
LUZP1 WILD-TYPE 73 108 103
'LUZP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.93

Table S1004.  Gene #102: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
LUZP1 MUTATED 4 1 1
LUZP1 WILD-TYPE 94 115 75
'LUZP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1005.  Gene #102: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
LUZP1 MUTATED 1 1 1 1
LUZP1 WILD-TYPE 49 50 41 25
'LUZP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S1006.  Gene #102: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
LUZP1 MUTATED 0 3 0 1
LUZP1 WILD-TYPE 27 55 35 48
'LUZP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S1007.  Gene #102: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
LUZP1 MUTATED 4 1 1
LUZP1 WILD-TYPE 99 85 100
'LUZP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S1008.  Gene #102: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
LUZP1 MUTATED 3 1 1 1
LUZP1 WILD-TYPE 80 80 77 47
'LUZP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S1009.  Gene #102: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
LUZP1 MUTATED 2 0 3 0 1
LUZP1 WILD-TYPE 59 72 88 16 39
'LUZP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S1010.  Gene #102: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
LUZP1 MUTATED 1 1 3 1
LUZP1 WILD-TYPE 98 70 71 35
'LUZP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.87

Table S1011.  Gene #102: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
LUZP1 MUTATED 3 0 3
LUZP1 WILD-TYPE 72 89 102
'LUZP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S1012.  Gene #102: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
LUZP1 MUTATED 4 0 1 1
LUZP1 WILD-TYPE 120 56 60 27
'C10ORF118 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S1013.  Gene #103: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
C10ORF118 MUTATED 1 4 2
C10ORF118 WILD-TYPE 75 105 103
'C10ORF118 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S1014.  Gene #103: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
C10ORF118 MUTATED 2 4 1
C10ORF118 WILD-TYPE 96 112 75
'C10ORF118 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S1015.  Gene #103: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
C10ORF118 MUTATED 1 2 2 0
C10ORF118 WILD-TYPE 49 49 40 26
'C10ORF118 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S1016.  Gene #103: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
C10ORF118 MUTATED 0 1 2 2
C10ORF118 WILD-TYPE 27 57 33 47
'C10ORF118 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S1017.  Gene #103: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
C10ORF118 MUTATED 4 1 2
C10ORF118 WILD-TYPE 99 85 99
'C10ORF118 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.085 (Fisher's exact test), Q value = 0.84

Table S1018.  Gene #103: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
C10ORF118 MUTATED 3 0 1 3
C10ORF118 WILD-TYPE 80 81 77 45
'C10ORF118 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S1019.  Gene #103: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
C10ORF118 MUTATED 1 2 3 0 1
C10ORF118 WILD-TYPE 60 70 88 16 39
'C10ORF118 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S1020.  Gene #103: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
C10ORF118 MUTATED 3 2 2 0
C10ORF118 WILD-TYPE 96 69 72 36
'C10ORF118 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S1021.  Gene #103: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
C10ORF118 MUTATED 2 1 4
C10ORF118 WILD-TYPE 73 88 101
'C10ORF118 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S1022.  Gene #103: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
C10ORF118 MUTATED 5 1 1 0
C10ORF118 WILD-TYPE 119 55 60 28
'OR51S1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S1023.  Gene #104: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
OR51S1 MUTATED 7 13 10
OR51S1 WILD-TYPE 69 96 95
'OR51S1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1024.  Gene #104: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
OR51S1 MUTATED 9 14 7
OR51S1 WILD-TYPE 89 102 69
'OR51S1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S1025.  Gene #104: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
OR51S1 MUTATED 4 8 5 2
OR51S1 WILD-TYPE 46 43 37 24
'OR51S1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.94

Table S1026.  Gene #104: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
OR51S1 MUTATED 1 5 4 9
OR51S1 WILD-TYPE 26 53 31 40
'OR51S1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S1027.  Gene #104: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
OR51S1 MUTATED 9 12 9
OR51S1 WILD-TYPE 94 74 92
'OR51S1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S1028.  Gene #104: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
OR51S1 MUTATED 7 10 6 7
OR51S1 WILD-TYPE 76 71 72 41
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1029.  Gene #104: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
OR51S1 MUTATED 7 7 11 2 2
OR51S1 WILD-TYPE 54 65 80 14 38
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S1030.  Gene #104: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
OR51S1 MUTATED 11 6 9 3
OR51S1 WILD-TYPE 88 65 65 33
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.054 (Fisher's exact test), Q value = 0.79

Table S1031.  Gene #104: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
OR51S1 MUTATED 13 5 11
OR51S1 WILD-TYPE 62 84 94
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0771 (Fisher's exact test), Q value = 0.84

Table S1032.  Gene #104: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
OR51S1 MUTATED 18 2 8 1
OR51S1 WILD-TYPE 106 54 53 27
'AMPD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S1033.  Gene #105: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
AMPD3 MUTATED 6 11 5
AMPD3 WILD-TYPE 70 98 100
'AMPD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.84

Table S1034.  Gene #105: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
AMPD3 MUTATED 11 9 2
AMPD3 WILD-TYPE 87 107 74
'AMPD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0955 (Fisher's exact test), Q value = 0.84

Table S1035.  Gene #105: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
AMPD3 MUTATED 5 3 7 0
AMPD3 WILD-TYPE 45 48 35 26
'AMPD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S1036.  Gene #105: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
AMPD3 MUTATED 2 7 4 2
AMPD3 WILD-TYPE 25 51 31 47
'AMPD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S1037.  Gene #105: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
AMPD3 MUTATED 9 8 5
AMPD3 WILD-TYPE 94 78 96
'AMPD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S1038.  Gene #105: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
AMPD3 MUTATED 7 5 4 6
AMPD3 WILD-TYPE 76 76 74 42
'AMPD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.99 (Fisher's exact test), Q value = 1

Table S1039.  Gene #105: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
AMPD3 MUTATED 4 6 6 1 3
AMPD3 WILD-TYPE 57 66 85 15 37
'AMPD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S1040.  Gene #105: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
AMPD3 MUTATED 9 4 5 2
AMPD3 WILD-TYPE 90 67 69 34
'AMPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S1041.  Gene #105: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
AMPD3 MUTATED 6 5 9
AMPD3 WILD-TYPE 69 84 96
'AMPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.9

Table S1042.  Gene #105: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
AMPD3 MUTATED 11 6 1 2
AMPD3 WILD-TYPE 113 50 60 26
'CD300E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S1043.  Gene #106: 'CD300E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
CD300E MUTATED 4 2 4
CD300E WILD-TYPE 72 107 101
'CD300E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S1044.  Gene #106: 'CD300E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
CD300E MUTATED 2 5 3
CD300E WILD-TYPE 96 111 73
'CD300E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S1045.  Gene #106: 'CD300E MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
CD300E MUTATED 2 3 2 0
CD300E WILD-TYPE 48 48 40 26
'CD300E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S1046.  Gene #106: 'CD300E MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
CD300E MUTATED 0 3 2 2
CD300E WILD-TYPE 27 55 33 47
'CD300E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.86

Table S1047.  Gene #106: 'CD300E MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
CD300E MUTATED 1 3 6
CD300E WILD-TYPE 102 83 95
'CD300E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S1048.  Gene #106: 'CD300E MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
CD300E MUTATED 2 4 4 0
CD300E WILD-TYPE 81 77 74 48
'CD300E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S1049.  Gene #106: 'CD300E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
CD300E MUTATED 3 2 2 0 2
CD300E WILD-TYPE 58 70 89 16 38
'CD300E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S1050.  Gene #106: 'CD300E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
CD300E MUTATED 3 3 1 2
CD300E WILD-TYPE 96 68 73 34
'CD300E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S1051.  Gene #106: 'CD300E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
CD300E MUTATED 4 3 2
CD300E WILD-TYPE 71 86 103
'CD300E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S1052.  Gene #106: 'CD300E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
CD300E MUTATED 3 1 3 2
CD300E WILD-TYPE 121 55 58 26
'SAG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S1053.  Gene #107: 'SAG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SAG MUTATED 5 3 3
SAG WILD-TYPE 71 106 102
'SAG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S1054.  Gene #107: 'SAG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SAG MUTATED 3 6 2
SAG WILD-TYPE 95 110 74
'SAG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.92

Table S1055.  Gene #107: 'SAG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
SAG MUTATED 3 0 2 2
SAG WILD-TYPE 47 51 40 24
'SAG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.88

Table S1056.  Gene #107: 'SAG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SAG MUTATED 3 1 2 1
SAG WILD-TYPE 24 57 33 48
'SAG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S1057.  Gene #107: 'SAG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SAG MUTATED 4 2 5
SAG WILD-TYPE 99 84 96
'SAG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S1058.  Gene #107: 'SAG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SAG MUTATED 3 2 5 1
SAG WILD-TYPE 80 79 73 47
'SAG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S1059.  Gene #107: 'SAG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
SAG MUTATED 4 4 3 0 0
SAG WILD-TYPE 57 68 88 16 40
'SAG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S1060.  Gene #107: 'SAG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
SAG MUTATED 4 5 2 0
SAG WILD-TYPE 95 66 72 36
'SAG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1061.  Gene #107: 'SAG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
SAG MUTATED 4 4 3
SAG WILD-TYPE 71 85 102
'SAG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.86

Table S1062.  Gene #107: 'SAG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
SAG MUTATED 4 1 6 0
SAG WILD-TYPE 120 55 55 28
'DDX17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S1063.  Gene #108: 'DDX17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
DDX17 MUTATED 4 2 2
DDX17 WILD-TYPE 72 107 103
'DDX17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.92

Table S1064.  Gene #108: 'DDX17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
DDX17 MUTATED 4 4 0
DDX17 WILD-TYPE 94 112 76
'DDX17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S1065.  Gene #108: 'DDX17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
DDX17 MUTATED 2 1 2 1
DDX17 WILD-TYPE 48 50 40 25
'DDX17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S1066.  Gene #108: 'DDX17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
DDX17 MUTATED 1 3 1 1
DDX17 WILD-TYPE 26 55 34 48
'DDX17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1067.  Gene #108: 'DDX17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
DDX17 MUTATED 3 2 3
DDX17 WILD-TYPE 100 84 98
'DDX17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S1068.  Gene #108: 'DDX17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
DDX17 MUTATED 2 1 3 2
DDX17 WILD-TYPE 81 80 75 46
'DDX17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S1069.  Gene #108: 'DDX17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
DDX17 MUTATED 1 3 1 0 2
DDX17 WILD-TYPE 60 69 90 16 38
'DDX17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S1070.  Gene #108: 'DDX17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
DDX17 MUTATED 2 3 1 1
DDX17 WILD-TYPE 97 68 73 35
'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S1071.  Gene #108: 'DDX17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
DDX17 MUTATED 3 1 3
DDX17 WILD-TYPE 72 88 102
'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S1072.  Gene #108: 'DDX17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
DDX17 MUTATED 2 2 2 1
DDX17 WILD-TYPE 122 54 59 27
'RUFY4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S1073.  Gene #109: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
RUFY4 MUTATED 4 3 4
RUFY4 WILD-TYPE 72 106 101
'RUFY4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.87

Table S1074.  Gene #109: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
RUFY4 MUTATED 7 3 1
RUFY4 WILD-TYPE 91 113 75
'RUFY4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S1075.  Gene #109: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
RUFY4 MUTATED 1 3 2 0
RUFY4 WILD-TYPE 49 48 40 26
'RUFY4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S1076.  Gene #109: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
RUFY4 MUTATED 0 2 1 3
RUFY4 WILD-TYPE 27 56 34 46
'RUFY4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S1077.  Gene #109: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
RUFY4 MUTATED 5 2 4
RUFY4 WILD-TYPE 98 84 97
'RUFY4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S1078.  Gene #109: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
RUFY4 MUTATED 4 2 3 2
RUFY4 WILD-TYPE 79 79 75 46
'RUFY4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S1079.  Gene #109: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
RUFY4 MUTATED 2 2 6 0 1
RUFY4 WILD-TYPE 59 70 85 16 39
'RUFY4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S1080.  Gene #109: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
RUFY4 MUTATED 3 3 4 1
RUFY4 WILD-TYPE 96 68 70 35
'RUFY4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S1081.  Gene #109: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
RUFY4 MUTATED 3 3 5
RUFY4 WILD-TYPE 72 86 100
'RUFY4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S1082.  Gene #109: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
RUFY4 MUTATED 7 1 2 1
RUFY4 WILD-TYPE 117 55 59 27
'MAP3K5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.86

Table S1083.  Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MAP3K5 MUTATED 2 11 7
MAP3K5 WILD-TYPE 74 98 98
'MAP3K5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S1084.  Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MAP3K5 MUTATED 6 11 3
MAP3K5 WILD-TYPE 92 105 73
'MAP3K5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.87

Table S1085.  Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
MAP3K5 MUTATED 7 3 2 0
MAP3K5 WILD-TYPE 43 48 40 26
'MAP3K5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S1086.  Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MAP3K5 MUTATED 2 6 1 3
MAP3K5 WILD-TYPE 25 52 34 46
'MAP3K5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.55

Table S1087.  Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MAP3K5 MUTATED 2 11 7
MAP3K5 WILD-TYPE 101 75 94

Figure S71.  Get High-res Image Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MAP3K5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S1088.  Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MAP3K5 MUTATED 4 5 7 4
MAP3K5 WILD-TYPE 79 76 71 44
'MAP3K5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S1089.  Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
MAP3K5 MUTATED 4 8 5 1 1
MAP3K5 WILD-TYPE 57 64 86 15 39
'MAP3K5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S1090.  Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MAP3K5 MUTATED 6 8 4 1
MAP3K5 WILD-TYPE 93 63 70 35
'MAP3K5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S1091.  Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
MAP3K5 MUTATED 6 7 6
MAP3K5 WILD-TYPE 69 82 99
'MAP3K5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.92

Table S1092.  Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
MAP3K5 MUTATED 8 2 8 1
MAP3K5 WILD-TYPE 116 54 53 27
'NTN4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S1093.  Gene #111: 'NTN4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
NTN4 MUTATED 4 7 4
NTN4 WILD-TYPE 72 102 101
'NTN4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.87

Table S1094.  Gene #111: 'NTN4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
NTN4 MUTATED 2 9 4
NTN4 WILD-TYPE 96 107 72
'NTN4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S1095.  Gene #111: 'NTN4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
NTN4 MUTATED 4 2 3 0
NTN4 WILD-TYPE 46 49 39 26
'NTN4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1096.  Gene #111: 'NTN4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
NTN4 MUTATED 2 4 2 1
NTN4 WILD-TYPE 25 54 33 48
'NTN4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S1097.  Gene #111: 'NTN4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
NTN4 MUTATED 6 4 5
NTN4 WILD-TYPE 97 82 96
'NTN4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S1098.  Gene #111: 'NTN4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
NTN4 MUTATED 4 3 5 3
NTN4 WILD-TYPE 79 78 73 45
'NTN4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S1099.  Gene #111: 'NTN4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
NTN4 MUTATED 5 5 4 0 1
NTN4 WILD-TYPE 56 67 87 16 39
'NTN4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.87

Table S1100.  Gene #111: 'NTN4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
NTN4 MUTATED 2 6 6 1
NTN4 WILD-TYPE 97 65 68 35
'NTN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S1101.  Gene #111: 'NTN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
NTN4 MUTATED 5 4 6
NTN4 WILD-TYPE 70 85 99
'NTN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S1102.  Gene #111: 'NTN4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
NTN4 MUTATED 7 2 5 1
NTN4 WILD-TYPE 117 54 56 27
'BCMO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.84

Table S1103.  Gene #112: 'BCMO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
BCMO1 MUTATED 8 6 3
BCMO1 WILD-TYPE 68 103 102
'BCMO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S1104.  Gene #112: 'BCMO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
BCMO1 MUTATED 7 4 6
BCMO1 WILD-TYPE 91 112 70
'BCMO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S1105.  Gene #112: 'BCMO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
BCMO1 MUTATED 3 4 4 0
BCMO1 WILD-TYPE 47 47 38 26
'BCMO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S1106.  Gene #112: 'BCMO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
BCMO1 MUTATED 2 6 1 2
BCMO1 WILD-TYPE 25 52 34 47
'BCMO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.95

Table S1107.  Gene #112: 'BCMO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
BCMO1 MUTATED 7 7 3
BCMO1 WILD-TYPE 96 79 98
'BCMO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S1108.  Gene #112: 'BCMO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
BCMO1 MUTATED 6 4 4 3
BCMO1 WILD-TYPE 77 77 74 45
'BCMO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S1109.  Gene #112: 'BCMO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
BCMO1 MUTATED 5 4 5 0 3
BCMO1 WILD-TYPE 56 68 86 16 37
'BCMO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S1110.  Gene #112: 'BCMO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
BCMO1 MUTATED 5 5 5 2
BCMO1 WILD-TYPE 94 66 69 34
'BCMO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.86

Table S1111.  Gene #112: 'BCMO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
BCMO1 MUTATED 8 3 5
BCMO1 WILD-TYPE 67 86 100
'BCMO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S1112.  Gene #112: 'BCMO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
BCMO1 MUTATED 9 1 4 2
BCMO1 WILD-TYPE 115 55 57 26
'OR11H12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S1113.  Gene #113: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
OR11H12 MUTATED 5 6 4
OR11H12 WILD-TYPE 71 103 101
'OR11H12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S1114.  Gene #113: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
OR11H12 MUTATED 4 5 6
OR11H12 WILD-TYPE 94 111 70
'OR11H12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.96

Table S1115.  Gene #113: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
OR11H12 MUTATED 3 2 2 4
OR11H12 WILD-TYPE 47 49 40 22
'OR11H12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S1116.  Gene #113: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
OR11H12 MUTATED 1 5 1 4
OR11H12 WILD-TYPE 26 53 34 45
'OR11H12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1117.  Gene #113: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
OR11H12 MUTATED 5 5 5
OR11H12 WILD-TYPE 98 81 96
'OR11H12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S1118.  Gene #113: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
OR11H12 MUTATED 3 5 5 2
OR11H12 WILD-TYPE 80 76 73 46
'OR11H12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S1119.  Gene #113: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
OR11H12 MUTATED 2 6 3 0 3
OR11H12 WILD-TYPE 59 66 88 16 37
'OR11H12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S1120.  Gene #113: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
OR11H12 MUTATED 5 5 2 2
OR11H12 WILD-TYPE 94 66 72 34
'OR11H12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S1121.  Gene #113: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
OR11H12 MUTATED 4 6 3
OR11H12 WILD-TYPE 71 83 102
'OR11H12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S1122.  Gene #113: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
OR11H12 MUTATED 4 4 3 2
OR11H12 WILD-TYPE 120 52 58 26
'SI MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0487 (Fisher's exact test), Q value = 0.78

Table S1123.  Gene #114: 'SI MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
SI MUTATED 20 31 16
SI WILD-TYPE 56 78 89

Figure S72.  Get High-res Image Gene #114: 'SI MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SI MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S1124.  Gene #114: 'SI MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
SI MUTATED 25 29 13
SI WILD-TYPE 73 87 63
'SI MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S1125.  Gene #114: 'SI MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
SI MUTATED 11 9 13 7
SI WILD-TYPE 39 42 29 19
'SI MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S1126.  Gene #114: 'SI MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
SI MUTATED 8 10 11 11
SI WILD-TYPE 19 48 24 38
'SI MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S1127.  Gene #114: 'SI MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
SI MUTATED 28 20 19
SI WILD-TYPE 75 66 82
'SI MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S1128.  Gene #114: 'SI MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
SI MUTATED 24 16 15 12
SI WILD-TYPE 59 65 63 36
'SI MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S1129.  Gene #114: 'SI MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
SI MUTATED 12 15 25 2 8
SI WILD-TYPE 49 57 66 14 32
'SI MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S1130.  Gene #114: 'SI MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
SI MUTATED 25 15 17 5
SI WILD-TYPE 74 56 57 31
'SI MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0886 (Fisher's exact test), Q value = 0.84

Table S1131.  Gene #114: 'SI MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
SI MUTATED 13 16 31
SI WILD-TYPE 62 73 74
'SI MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0857 (Fisher's exact test), Q value = 0.84

Table S1132.  Gene #114: 'SI MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
SI MUTATED 36 9 12 3
SI WILD-TYPE 88 47 49 25
'ADAM33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S1133.  Gene #115: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
ADAM33 MUTATED 5 7 4
ADAM33 WILD-TYPE 71 102 101
'ADAM33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.92

Table S1134.  Gene #115: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
ADAM33 MUTATED 3 10 3
ADAM33 WILD-TYPE 95 106 73
'ADAM33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.9

Table S1135.  Gene #115: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
ADAM33 MUTATED 6 1 4 3
ADAM33 WILD-TYPE 44 50 38 23
'ADAM33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.979 (Fisher's exact test), Q value = 1

Table S1136.  Gene #115: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
ADAM33 MUTATED 2 4 3 5
ADAM33 WILD-TYPE 25 54 32 44
'ADAM33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S1137.  Gene #115: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
ADAM33 MUTATED 5 6 5
ADAM33 WILD-TYPE 98 80 96
'ADAM33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S1138.  Gene #115: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
ADAM33 MUTATED 4 6 4 2
ADAM33 WILD-TYPE 79 75 74 46
'ADAM33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S1139.  Gene #115: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
ADAM33 MUTATED 3 5 6 0 2
ADAM33 WILD-TYPE 58 67 85 16 38
'ADAM33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S1140.  Gene #115: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ADAM33 MUTATED 4 4 6 2
ADAM33 WILD-TYPE 95 67 68 34
'ADAM33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1141.  Gene #115: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
ADAM33 MUTATED 5 5 6
ADAM33 WILD-TYPE 70 84 99
'ADAM33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S1142.  Gene #115: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
ADAM33 MUTATED 7 4 4 1
ADAM33 WILD-TYPE 117 52 57 27
'RICTOR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.87

Table S1143.  Gene #116: 'RICTOR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
RICTOR MUTATED 6 4 2
RICTOR WILD-TYPE 70 105 103
'RICTOR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S1144.  Gene #116: 'RICTOR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
RICTOR MUTATED 5 5 2
RICTOR WILD-TYPE 93 111 74
'RICTOR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S1145.  Gene #116: 'RICTOR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
RICTOR MUTATED 3 1 3 1
RICTOR WILD-TYPE 47 50 39 25
'RICTOR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S1146.  Gene #116: 'RICTOR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
RICTOR MUTATED 1 3 3 1
RICTOR WILD-TYPE 26 55 32 48
'RICTOR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S1147.  Gene #116: 'RICTOR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
RICTOR MUTATED 4 5 3
RICTOR WILD-TYPE 99 81 98
'RICTOR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S1148.  Gene #116: 'RICTOR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
RICTOR MUTATED 4 4 2 2
RICTOR WILD-TYPE 79 77 76 46
'RICTOR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S1149.  Gene #116: 'RICTOR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
RICTOR MUTATED 3 4 4 0 0
RICTOR WILD-TYPE 58 68 87 16 40
'RICTOR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S1150.  Gene #116: 'RICTOR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
RICTOR MUTATED 5 3 3 0
RICTOR WILD-TYPE 94 68 71 36
'RICTOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S1151.  Gene #116: 'RICTOR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
RICTOR MUTATED 4 3 4
RICTOR WILD-TYPE 71 86 101
'RICTOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S1152.  Gene #116: 'RICTOR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
RICTOR MUTATED 6 3 2 0
RICTOR WILD-TYPE 118 53 59 28
'MED17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.92

Table S1153.  Gene #117: 'MED17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 76 109 105
MED17 MUTATED 0 4 1
MED17 WILD-TYPE 76 105 104
'MED17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S1154.  Gene #117: 'MED17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 98 116 76
MED17 MUTATED 2 1 2
MED17 WILD-TYPE 96 115 74
'MED17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S1155.  Gene #117: 'MED17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 50 51 42 26
MED17 MUTATED 2 1 0 1
MED17 WILD-TYPE 48 50 42 25
'MED17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S1156.  Gene #117: 'MED17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 35 49
MED17 MUTATED 1 1 1 1
MED17 WILD-TYPE 26 57 34 48
'MED17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.86

Table S1157.  Gene #117: 'MED17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 103 86 101
MED17 MUTATED 1 0 4
MED17 WILD-TYPE 102 86 97
'MED17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S1158.  Gene #117: 'MED17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 83 81 78 48
MED17 MUTATED 1 1 3 0
MED17 WILD-TYPE 82 80 75 48
'MED17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.84

Table S1159.  Gene #117: 'MED17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 61 72 91 16 40
MED17 MUTATED 1 4 0 0 0
MED17 WILD-TYPE 60 68 91 16 40
'MED17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.95

Table S1160.  Gene #117: 'MED17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MED17 MUTATED 2 3 0 0
MED17 WILD-TYPE 97 68 74 36
'MED17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S1161.  Gene #117: 'MED17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 89 105
MED17 MUTATED 1 3 1
MED17 WILD-TYPE 74 86 104
'MED17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 0.63

Table S1162.  Gene #117: 'MED17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 124 56 61 28
MED17 MUTATED 0 1 4 0
MED17 WILD-TYPE 124 55 57 28

Figure S73.  Get High-res Image Gene #117: 'MED17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

Methods & Data
Input

  • Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline

  • Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/SKCM-TM/20359501/transformed.cor.cli.txt

  • Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/SKCM-TM/20140641/SKCM-TM.transferedmergedcluster.txt

  • Number of patients = 290

  • Number of significantly mutated genes = 117

  • Number of Molecular subtypes = 10

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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