name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme	callscheme_name	N_tot	nsil_tot	nnon_tot	rate_sil	rate_non
TCGA-B7-5816-01A-21D-1600-08	1533	1510	23	1166	1.500326e-02	0	coding only	34834024	327	1122	9.387374e-06	3.220989e-05
TCGA-B7-5818-01A-11D-1600-08	464	455	9	347	1.939655e-02	0	coding only	34834024	105	326	3.014294e-06	9.358666e-06
TCGA-BR-4183-01A-02D-1126-08	70	68	2	50	2.857143e-02	0	coding only	34834024	18	49	5.167362e-07	1.406671e-06
TCGA-BR-4184-01A-01D-1126-08	4616	4549	67	3330	1.451473e-02	0	coding only	34834024	1195	3221	3.430554e-05	9.246707e-05
TCGA-BR-4187-01A-01D-1126-08	37	36	1	26	2.702703e-02	0	coding only	34834024	10	25	2.870756e-07	7.176891e-07
TCGA-BR-4188-01A-01D-1126-08	85	84	1	65	1.176471e-02	0	coding only	34834024	19	63	5.454437e-07	1.808577e-06
TCGA-BR-4191-01A-02D-1126-08	223	220	3	177	1.345291e-02	0	coding only	34834024	41	170	1.177010e-06	4.880286e-06
TCGA-BR-4201-01A-01D-1126-08	1648	1608	40	1211	2.427184e-02	0	coding only	34834024	379	1165	1.088017e-05	3.344431e-05
TCGA-BR-4253-01A-01D-1126-08	99	98	1	75	1.010101e-02	0	coding only	34834024	20	75	5.741513e-07	2.153067e-06
TCGA-BR-4255-01A-01D-1126-08	70	69	1	45	1.428571e-02	0	coding only	34834024	24	43	6.889816e-07	1.234425e-06
TCGA-BR-4256-01A-01D-1126-08	1170	1152	18	854	1.538462e-02	0	coding only	34834024	285	810	8.181656e-06	2.325313e-05
TCGA-BR-4257-01A-01D-1126-08	1273	1249	24	900	1.885310e-02	0	coding only	34834024	333	854	9.559619e-06	2.451626e-05
TCGA-BR-4267-01A-01D-1126-08	103	102	1	78	9.708738e-03	0	coding only	34834024	22	74	6.315664e-07	2.124360e-06
TCGA-BR-4279-01A-01D-1126-08	57	57	0	36	0	0	coding only	34834024	20	35	5.741513e-07	1.004765e-06
TCGA-BR-4280-01A-01D-1126-08	881	869	12	687	1.362089e-02	0	coding only	34834024	174	656	4.995116e-06	1.883216e-05
TCGA-BR-4292-01A-01D-1126-08	1661	1617	44	1223	2.649007e-02	0	coding only	34834024	368	1169	1.056438e-05	3.355914e-05
TCGA-BR-4294-01A-01D-1126-08	34	34	0	28	0	0	coding only	34834024	6	27	1.722454e-07	7.751042e-07
TCGA-BR-4357-01A-01D-1158-08	283	281	2	215	7.067138e-03	0	coding only	34834024	60	202	1.722454e-06	5.798928e-06
TCGA-BR-4361-01A-01D-1158-08	3373	3311	62	2460	1.838126e-02	0	coding only	34834024	813	2332	2.333925e-05	6.694604e-05
TCGA-BR-4362-01A-01D-1158-08	2065	2003	62	1539	3.002421e-02	1	exome+100bp flanks	34834024	440	1468	1.263133e-05	4.214271e-05
TCGA-BR-4363-01A-01D-1158-08	693	678	15	527	2.164502e-02	0	coding only	34834024	146	503	4.191304e-06	1.443991e-05
TCGA-BR-4366-01A-01D-1158-08	165	163	2	121	1.212121e-02	0	coding only	34834024	42	118	1.205718e-06	3.387493e-06
TCGA-BR-4368-01A-01D-1158-08	1642	1609	33	1204	2.009744e-02	0	coding only	34834024	383	1160	1.099500e-05	3.330078e-05
TCGA-BR-4369-01A-01D-1158-08	200	197	3	146	1.500000e-02	0	coding only	34834024	49	140	1.406671e-06	4.019059e-06
TCGA-BR-4370-01A-01D-1158-08	1334	1302	32	979	2.398801e-02	0	coding only	34834024	305	932	8.755807e-06	2.675545e-05
TCGA-BR-4371-01A-01D-1158-08	182	180	2	132	1.098901e-02	0	coding only	34834024	47	130	1.349256e-06	3.731983e-06
TCGA-BR-6452-01A-12D-1800-08	8772	8649	123	6451	1.402189e-02	0	coding only	34834024	2093	6145	6.008493e-05	1.764080e-04
TCGA-BR-6453-01A-11D-1800-08	221	216	5	161	2.262443e-02	0	coding only	34834024	51	153	1.464086e-06	4.392257e-06
TCGA-BR-6454-01A-11D-1800-08	176	173	3	131	1.704545e-02	0	coding only	34834024	36	125	1.033472e-06	3.588446e-06
TCGA-BR-6455-01A-11D-1800-08	114	110	4	75	3.508772e-02	0	coding only	34834024	33	70	9.473496e-07	2.009530e-06
TCGA-BR-6456-01A-11D-1800-08	51	51	0	37	0	0	coding only	34834024	14	35	4.019059e-07	1.004765e-06
TCGA-BR-6457-01A-21D-1800-08	142	141	1	105	7.042254e-03	0	coding only	34834024	35	96	1.004765e-06	2.755926e-06
TCGA-BR-6458-01A-11D-1800-08	344	339	5	255	1.453488e-02	0	coding only	34834024	77	244	2.210482e-06	7.004646e-06
TCGA-BR-6563-01A-13D-2053-08	86	85	1	67	1.162791e-02	0	coding only	34834024	16	65	4.593210e-07	1.865992e-06
TCGA-BR-6564-01A-12D-1882-08	42	42	0	30	0	0	coding only	34834024	12	29	3.444908e-07	8.325194e-07
TCGA-BR-6565-01A-11D-1800-08	169	169	0	136	0	0	coding only	34834024	30	129	8.612269e-07	3.703276e-06
TCGA-BR-6566-01A-11D-1800-08	1175	1149	26	859	2.212766e-02	0	coding only	34834024	277	817	7.951995e-06	2.345408e-05
TCGA-BR-6705-01A-12D-1882-08	120	118	2	91	1.666667e-02	0	coding only	34834024	26	89	7.463967e-07	2.554973e-06
TCGA-BR-6706-01A-11D-1882-08	256	253	3	201	1.171875e-02	0	coding only	34834024	49	195	1.406671e-06	5.597975e-06
TCGA-BR-6707-01A-11D-1882-08	80	80	0	62	0	0	coding only	34834024	18	62	5.167362e-07	1.779869e-06
TCGA-BR-6710-01A-11D-1882-08	1	1	0	1	0	0	coding only	34834024	0	1	0	2.870756e-08
TCGA-BR-6801-01A-11D-1882-08	58	57	1	40	1.724138e-02	0	coding only	34834024	17	39	4.880286e-07	1.119595e-06
TCGA-BR-6802-01A-11D-1882-08	583	574	9	418	1.543739e-02	0	coding only	34834024	146	403	4.191304e-06	1.156915e-05
TCGA-BR-6803-01A-11D-1882-08	20	20	0	16	0	0	coding only	34834024	4	15	1.148303e-07	4.306135e-07
TCGA-BR-6852-01A-11D-1882-08	1377	1353	24	1030	1.742919e-02	0	coding only	34834024	310	981	8.899345e-06	2.816212e-05
TCGA-BR-7196-01A-11D-2053-08	84	82	2	59	2.380952e-02	0	coding only	34834024	23	56	6.602740e-07	1.607624e-06
TCGA-BR-7197-01A-11D-2201-08	201	196	5	152	2.487562e-02	0	coding only	34834024	41	146	1.177010e-06	4.191304e-06
TCGA-BR-7703-01A-11D-2053-08	864	853	11	653	1.273148e-02	0	coding only	34834024	190	624	5.454437e-06	1.791352e-05
TCGA-BR-7707-01A-11D-2053-08	1723	1701	22	1281	1.276843e-02	0	coding only	34834024	406	1221	1.165527e-05	3.505194e-05
TCGA-BR-7715-01A-11D-2053-08	164	163	1	127	6.097561e-03	0	coding only	34834024	35	122	1.004765e-06	3.502323e-06
TCGA-BR-7716-01A-21D-2053-08	176	175	1	136	5.681818e-03	0	coding only	34834024	39	132	1.119595e-06	3.789399e-06
TCGA-BR-7717-01A-11D-2053-08	167	165	2	118	1.197605e-02	0	coding only	34834024	46	113	1.320548e-06	3.243955e-06
TCGA-BR-7722-01A-31D-2201-08	61	60	1	46	1.639344e-02	0	coding only	34834024	14	44	4.019059e-07	1.263133e-06
TCGA-BR-7723-01A-11D-2053-08	178	170	8	126	4.494382e-02	1	exome+100bp flanks	34834024	40	118	1.148303e-06	3.387493e-06
TCGA-BR-7851-01A-11D-2201-08	1797	1761	36	1288	2.003339e-02	0	coding only	34834024	448	1247	1.286099e-05	3.579833e-05
TCGA-BR-7901-01A-11D-2201-08	235	233	2	170	8.510638e-03	0	coding only	34834024	61	165	1.751161e-06	4.736748e-06
TCGA-BR-7957-01A-11D-2201-08	57	55	2	44	3.508772e-02	0	coding only	34834024	10	38	2.870756e-07	1.090887e-06
TCGA-BR-7958-01A-21D-2340-08	182	175	7	139	3.846154e-02	1	exome+100bp flanks	34834024	36	132	1.033472e-06	3.789399e-06
TCGA-BR-7959-01A-11D-2340-08	111	109	2	89	1.801802e-02	0	coding only	34834024	20	84	5.741513e-07	2.411435e-06
TCGA-BR-8058-01A-31D-2340-08	57	55	2	45	3.508772e-02	0	coding only	34834024	10	41	2.870756e-07	1.177010e-06
TCGA-BR-8059-01A-11D-2340-08	812	803	9	628	1.108374e-02	0	coding only	34834024	173	605	4.966409e-06	1.736808e-05
TCGA-BR-8077-01A-11D-2340-08	135	135	0	106	0	0	coding only	34834024	29	104	8.325194e-07	2.985587e-06
TCGA-BR-8078-01A-11D-2340-08	1926	1877	49	1473	2.544133e-02	0	coding only	34834024	383	1409	1.099500e-05	4.044896e-05
TCGA-BR-8080-01A-11D-2340-08	168	166	2	132	1.190476e-02	0	coding only	34834024	32	128	9.186421e-07	3.674568e-06
TCGA-BR-8081-01A-11D-2340-08	1105	1082	23	795	2.081448e-02	0	coding only	34834024	267	764	7.664920e-06	2.193258e-05
TCGA-BR-8284-01A-11D-2340-08	378	372	6	271	1.587302e-02	0	coding only	34834024	99	263	2.842049e-06	7.550090e-06
TCGA-BR-8286-01A-12D-2340-08	164	163	1	112	6.097561e-03	0	coding only	34834024	48	107	1.377963e-06	3.071709e-06
TCGA-BR-8289-01A-11D-2340-08	227	224	3	180	1.321586e-02	0	coding only	34834024	43	171	1.234425e-06	4.908994e-06
TCGA-BR-8291-01A-11D-2340-08	31	30	1	26	3.225806e-02	0	coding only	34834024	4	26	1.148303e-07	7.463967e-07
TCGA-BR-8295-01A-11D-2340-08	60	57	3	43	5.000000e-02	0	coding only	34834024	13	42	3.731983e-07	1.205718e-06
TCGA-BR-8296-01A-11D-2340-08	88	88	0	61	0	0	coding only	34834024	23	58	6.602740e-07	1.665039e-06
TCGA-BR-8297-01A-12D-2340-08	302	297	5	222	1.655629e-02	0	coding only	34834024	71	210	2.038237e-06	6.028589e-06
TCGA-BR-8360-01A-11D-2340-08	1093	1072	21	795	1.921317e-02	0	coding only	34834024	261	751	7.492674e-06	2.155938e-05
TCGA-BR-8361-01A-11D-2340-08	1941	1895	46	1448	2.369912e-02	0	coding only	34834024	430	1380	1.234425e-05	3.961644e-05
TCGA-BR-8363-01A-11D-2340-08	1418	1381	37	1051	2.609309e-02	0	coding only	34834024	317	1016	9.100298e-06	2.916689e-05
TCGA-BR-8364-01A-11D-2340-08	24	23	1	19	4.166667e-02	0	coding only	34834024	4	18	1.148303e-07	5.167362e-07
TCGA-BR-8365-01A-21D-2340-08	26	26	0	21	0	0	coding only	34834024	5	19	1.435378e-07	5.454437e-07
TCGA-BR-8366-01A-11D-2340-08	190	188	2	155	1.052632e-02	0	coding only	34834024	31	148	8.899345e-07	4.248720e-06
TCGA-BR-8367-01A-11D-2340-08	75	75	0	58	0	0	coding only	34834024	17	54	4.880286e-07	1.550208e-06
TCGA-BR-8368-01A-11D-2340-08	1228	1199	29	890	2.361564e-02	0	coding only	34834024	294	850	8.440024e-06	2.440143e-05
TCGA-BR-8369-01A-11D-2340-08	230	227	3	178	1.304348e-02	0	coding only	34834024	48	167	1.377963e-06	4.794163e-06
TCGA-BR-8370-01A-11D-2340-08	121	121	0	87	0	0	coding only	34834024	33	85	9.473496e-07	2.440143e-06
TCGA-BR-8371-01A-11D-2340-08	23	23	0	15	0	0	coding only	34834024	8	15	2.296605e-07	4.306135e-07
TCGA-BR-8372-01A-11D-2340-08	1552	1515	37	1145	2.384021e-02	0	coding only	34834024	346	1093	9.932817e-06	3.137737e-05
TCGA-BR-8373-01A-11D-2340-08	109	107	2	72	1.834862e-02	0	coding only	34834024	33	67	9.473496e-07	1.923407e-06
TCGA-BR-8380-01A-11D-2340-08	81	81	0	61	0	0	coding only	34834024	19	59	5.454437e-07	1.693746e-06
TCGA-BR-8381-01A-11D-2394-08	138	138	0	100	0	0	coding only	34834024	38	97	1.090887e-06	2.784634e-06
TCGA-BR-8382-01A-11D-2394-08	1025	1007	18	751	1.756098e-02	0	coding only	34834024	245	722	7.033353e-06	2.072686e-05
TCGA-BR-8384-01A-21D-2394-08	46	46	0	39	0	0	coding only	34834024	7	38	2.009530e-07	1.090887e-06
TCGA-BR-8483-01A-31D-2394-08	140	140	0	109	0	0	coding only	34834024	29	106	8.325194e-07	3.043002e-06
TCGA-BR-8484-01A-11D-2394-08	95	93	2	61	2.105263e-02	0	coding only	34834024	30	60	8.612269e-07	1.722454e-06
TCGA-BR-8485-01A-11D-2394-08	346	343	3	262	8.670520e-03	0	coding only	34834024	77	253	2.210482e-06	7.263014e-06
TCGA-BR-8486-01A-31D-2394-08	63	63	0	52	0	0	coding only	34834024	11	51	3.157832e-07	1.464086e-06
TCGA-BR-8487-01A-11D-2394-08	3693	3613	80	2761	2.166260e-02	0	coding only	34834024	803	2620	2.305217e-05	7.521382e-05
TCGA-BR-8588-01A-11D-2394-08	139	137	2	101	1.438849e-02	0	coding only	34834024	34	97	9.760572e-07	2.784634e-06
TCGA-BR-8589-01A-11D-2394-08	1230	1215	15	976	1.219512e-02	0	coding only	34834024	225	931	6.459202e-06	2.672674e-05
TCGA-BR-8590-01A-11D-2394-08	138	133	5	103	3.623188e-02	1	exome+100bp flanks	34834024	28	99	8.038118e-07	2.842049e-06
TCGA-BR-8591-01A-11D-2394-08	1767	1719	48	1300	2.716469e-02	0	coding only	34834024	401	1239	1.151173e-05	3.556867e-05
TCGA-BR-8592-01A-11D-2394-08	42	41	1	33	2.380952e-02	0	coding only	34834024	8	31	2.296605e-07	8.899345e-07
TCGA-BR-8676-01A-11D-2394-08	94	91	3	70	3.191489e-02	0	coding only	34834024	21	63	6.028589e-07	1.808577e-06
TCGA-BR-8677-01A-11D-2394-08	80	78	2	56	2.500000e-02	0	coding only	34834024	22	53	6.315664e-07	1.521501e-06
TCGA-BR-8678-01A-11D-2394-08	126	126	0	98	0	0	coding only	34834024	26	91	7.463967e-07	2.612388e-06
TCGA-BR-8679-01A-11D-2394-08	175	174	1	131	5.714286e-03	0	coding only	34834024	42	130	1.205718e-06	3.731983e-06
TCGA-BR-8680-01A-11D-2394-08	6709	6614	95	5199	1.416008e-02	0	coding only	34834024	1340	4926	3.846814e-05	1.414135e-04
TCGA-BR-8682-01A-11D-2394-08	81	81	0	60	0	0	coding only	34834024	21	58	6.028589e-07	1.665039e-06
TCGA-BR-8683-01A-11D-2394-08	167	163	4	122	2.395210e-02	0	coding only	34834024	39	119	1.119595e-06	3.416200e-06
TCGA-BR-8686-01A-11D-2394-08	124	122	2	84	1.612903e-02	0	coding only	34834024	37	79	1.062180e-06	2.267898e-06
TCGA-BR-8687-01A-11D-2394-08	201	199	2	150	9.950249e-03	0	coding only	34834024	46	144	1.320548e-06	4.133889e-06
TCGA-BR-8690-01A-11D-2394-08	179	176	3	130	1.675978e-02	0	coding only	34834024	45	128	1.291840e-06	3.674568e-06
TCGA-BR-A44T-01A-32D-A24D-08	29	29	0	15	0	0	coding only	34834024	13	15	3.731983e-07	4.306135e-07
TCGA-BR-A44U-01A-11D-A24D-08	102	99	3	69	2.941176e-02	0	coding only	34834024	27	67	7.751042e-07	1.923407e-06
TCGA-BR-A452-01A-91D-A25D-08	127	125	2	92	1.574803e-02	0	coding only	34834024	32	85	9.186421e-07	2.440143e-06
TCGA-BR-A453-01A-11D-A24D-08	76	75	1	52	1.315789e-02	0	coding only	34834024	21	51	6.028589e-07	1.464086e-06
TCGA-BR-A4CQ-01A-12D-A25D-08	191	187	4	140	2.094241e-02	0	coding only	34834024	45	131	1.291840e-06	3.760691e-06
TCGA-BR-A4CR-01A-11D-A24D-08	77	77	0	48	0	0	coding only	34834024	28	43	8.038118e-07	1.234425e-06
TCGA-BR-A4CS-01A-11D-A24D-08	182	179	3	130	1.648352e-02	0	coding only	34834024	46	126	1.320548e-06	3.617153e-06
TCGA-BR-A4IU-01A-22D-A25D-08	26	25	1	21	3.846154e-02	0	coding only	34834024	3	21	8.612269e-08	6.028589e-07
TCGA-BR-A4IV-01A-31D-A25D-08	28	27	1	20	3.571429e-02	0	coding only	34834024	7	18	2.009530e-07	5.167362e-07
TCGA-BR-A4IY-01A-11D-A25D-08	158	153	5	119	3.164557e-02	1	exome+100bp flanks	34834024	33	118	9.473496e-07	3.387493e-06
TCGA-BR-A4IZ-01A-32D-A25D-08	10	9	1	9	1.000000e-01	0	coding only	34834024	0	9	0	2.583681e-07
TCGA-BR-A4J1-01A-11D-A25D-08	79	76	3	56	3.797468e-02	0	coding only	34834024	19	55	5.454437e-07	1.578916e-06
TCGA-BR-A4J2-01A-21D-A25D-08	49	49	0	31	0	0	coding only	34834024	17	31	4.880286e-07	8.899345e-07
TCGA-BR-A4J4-01A-12D-A25D-08	90	88	2	73	2.222222e-02	0	coding only	34834024	14	71	4.019059e-07	2.038237e-06
TCGA-BR-A4J6-01A-11D-A25D-08	40	40	0	29	0	0	coding only	34834024	11	28	3.157832e-07	8.038118e-07
TCGA-BR-A4J7-01A-31D-A25D-08	57	57	0	41	0	0	coding only	34834024	16	39	4.593210e-07	1.119595e-06
TCGA-BR-A4J8-01A-11D-A25D-08	111	111	0	72	0	0	coding only	34834024	38	68	1.090887e-06	1.952114e-06
TCGA-BR-A4PD-01A-11D-A25D-08	173	169	4	129	2.312139e-02	0	coding only	34834024	35	121	1.004765e-06	3.473615e-06
TCGA-BR-A4PE-01A-31D-A25D-08	238	231	7	175	2.941176e-02	0	coding only	34834024	53	168	1.521501e-06	4.822871e-06
TCGA-BR-A4PF-01A-11D-A25D-08	110	110	0	92	0	0	coding only	34834024	18	88	5.167362e-07	2.526266e-06
TCGA-BR-A4QI-01A-12D-A25D-08	150	147	3	107	2.000000e-02	0	coding only	34834024	38	102	1.090887e-06	2.928172e-06
TCGA-BR-A4QL-01A-31D-A25D-08	2199	2154	45	1644	2.046385e-02	0	coding only	34834024	482	1569	1.383705e-05	4.504217e-05
TCGA-BR-A4QM-01A-12D-A25D-08	116	115	1	77	8.620690e-03	0	coding only	34834024	34	74	9.760572e-07	2.124360e-06
TCGA-CD-5798-01A-11D-1600-08	100	99	1	76	1.000000e-02	0	coding only	34834024	21	74	6.028589e-07	2.124360e-06
TCGA-CD-5799-01A-11D-1600-08	55	53	2	36	3.636364e-02	0	coding only	34834024	16	35	4.593210e-07	1.004765e-06
TCGA-CD-5800-01A-11D-1600-08	177	173	4	132	2.259887e-02	0	coding only	34834024	39	127	1.119595e-06	3.645861e-06
TCGA-CD-5801-01A-11D-1600-08	594	584	10	455	1.683502e-02	0	coding only	34834024	122	431	3.502323e-06	1.237296e-05
TCGA-CD-5802-01A-11D-1600-08	62	61	1	47	1.612903e-02	0	coding only	34834024	14	45	4.019059e-07	1.291840e-06
TCGA-CD-5803-01A-11D-1600-08	45	45	0	34	0	0	coding only	34834024	10	34	2.870756e-07	9.760572e-07
TCGA-CD-5804-01A-12D-2053-08	103	101	2	80	1.941748e-02	0	coding only	34834024	20	77	5.741513e-07	2.210482e-06
TCGA-CD-5813-01A-11D-1600-08	199	195	4	152	2.010050e-02	0	coding only	34834024	43	143	1.234425e-06	4.105182e-06
TCGA-CD-8524-01A-11D-2340-08	170	170	0	133	0	0	coding only	34834024	35	127	1.004765e-06	3.645861e-06
TCGA-CD-8525-01A-11D-2340-08	92	86	6	69	6.521739e-02	0	coding only	34834024	17	66	4.880286e-07	1.894699e-06
TCGA-CD-8526-01A-11D-2340-08	49	49	0	43	0	0	coding only	34834024	6	40	1.722454e-07	1.148303e-06
TCGA-CD-8527-01A-11D-2340-08	303	297	6	219	1.980198e-02	0	coding only	34834024	76	208	2.181775e-06	5.971173e-06
TCGA-CD-8528-01A-11D-2340-08	116	115	1	87	8.620690e-03	0	coding only	34834024	26	82	7.463967e-07	2.354020e-06
TCGA-CD-8529-01A-11D-2340-08	454	448	6	341	1.321586e-02	0	coding only	34834024	102	326	2.928172e-06	9.358666e-06
TCGA-CD-8530-01A-11D-2340-08	101	101	0	73	0	0	coding only	34834024	27	69	7.751042e-07	1.980822e-06
TCGA-CD-8531-01A-11D-2340-08	267	266	1	204	3.745318e-03	0	coding only	34834024	59	193	1.693746e-06	5.540560e-06
TCGA-CD-8532-01A-11D-2340-08	56	53	3	34	5.357143e-02	0	coding only	34834024	17	32	4.880286e-07	9.186421e-07
TCGA-CD-8534-01A-11D-2340-08	84	82	2	64	2.380952e-02	0	coding only	34834024	18	63	5.167362e-07	1.808577e-06
TCGA-CD-8535-01A-11D-2340-08	301	295	6	214	1.993355e-02	0	coding only	34834024	80	205	2.296605e-06	5.885051e-06
TCGA-CD-8536-01A-11D-2340-08	1062	1032	30	809	2.824859e-02	0	coding only	34834024	215	766	6.172126e-06	2.198999e-05
TCGA-CD-A486-01A-11D-A24D-08	106	105	1	84	9.433962e-03	0	coding only	34834024	20	81	5.741513e-07	2.325313e-06
TCGA-CD-A487-01A-21D-A24D-08	203	200	3	157	1.477833e-02	0	coding only	34834024	40	150	1.148303e-06	4.306135e-06
TCGA-CD-A489-01A-11D-A24D-08	87	83	4	63	4.597701e-02	0	coding only	34834024	20	61	5.741513e-07	1.751161e-06
TCGA-CD-A48A-01A-12D-A24D-08	263	260	3	202	1.140684e-02	0	coding only	34834024	54	188	1.550208e-06	5.397022e-06
TCGA-CD-A48C-01A-11D-A24D-08	243	239	4	178	1.646091e-02	0	coding only	34834024	59	173	1.693746e-06	4.966409e-06
TCGA-CD-A4MG-01A-11D-A25D-08	3008	2960	48	2257	1.595745e-02	0	coding only	34834024	669	2159	1.920536e-05	6.197963e-05
TCGA-CD-A4MH-01A-11D-A25D-08	97	96	1	67	1.030928e-02	0	coding only	34834024	28	65	8.038118e-07	1.865992e-06
TCGA-CD-A4MI-01A-21D-A25D-08	1166	1144	22	847	1.886792e-02	0	coding only	34834024	285	809	8.181656e-06	2.322442e-05
TCGA-CD-A4MJ-01A-11D-A25D-08	802	783	19	610	2.369077e-02	0	coding only	34834024	166	576	4.765456e-06	1.653556e-05
TCGA-CG-4300-01A-01D-1158-08	159	156	3	120	1.886792e-02	0	coding only	34834024	33	115	9.473496e-07	3.301370e-06
TCGA-CG-4301-01A-01D-1158-08	57	57	0	43	0	0	coding only	34834024	14	43	4.019059e-07	1.234425e-06
TCGA-CG-4304-01A-01D-1158-08	84	84	0	56	0	0	coding only	34834024	28	54	8.038118e-07	1.550208e-06
TCGA-CG-4305-01A-01D-1158-08	1389	1363	26	1022	1.871850e-02	0	coding only	34834024	326	980	9.358666e-06	2.813341e-05
TCGA-CG-4306-01A-01D-1158-08	1327	1300	27	983	2.034665e-02	0	coding only	34834024	304	934	8.727100e-06	2.681287e-05
TCGA-CG-4436-01A-01D-1158-08	207	206	1	159	4.830918e-03	0	coding only	34834024	44	148	1.263133e-06	4.248720e-06
TCGA-CG-4437-01A-01D-1800-08	605	594	11	463	1.818182e-02	0	coding only	34834024	128	442	3.674568e-06	1.268874e-05
TCGA-CG-4438-01A-01D-1158-08	156	155	1	124	6.410256e-03	0	coding only	34834024	31	115	8.899345e-07	3.301370e-06
TCGA-CG-4440-01A-01D-1158-08	138	134	4	110	2.898551e-02	0	coding only	34834024	22	108	6.315664e-07	3.100417e-06
TCGA-CG-4441-01A-01D-1800-08	137	135	2	99	1.459854e-02	0	coding only	34834024	35	96	1.004765e-06	2.755926e-06
TCGA-CG-4442-01A-01D-1158-08	1869	1834	35	1392	1.872659e-02	0	coding only	34834024	419	1328	1.202847e-05	3.812365e-05
TCGA-CG-4443-01A-01D-1158-08	114	113	1	81	8.771930e-03	0	coding only	34834024	32	76	9.186421e-07	2.181775e-06
TCGA-CG-4444-01A-01D-1158-08	203	200	3	141	1.477833e-02	0	coding only	34834024	54	140	1.550208e-06	4.019059e-06
TCGA-CG-4449-01A-01D-1158-08	115	114	1	93	8.695652e-03	0	coding only	34834024	20	87	5.741513e-07	2.497558e-06
TCGA-CG-4455-01A-01D-1158-08	57	56	1	36	1.754386e-02	0	coding only	34834024	18	35	5.167362e-07	1.004765e-06
TCGA-CG-4462-01A-01D-1158-08	85	85	0	56	0	0	coding only	34834024	25	53	7.176891e-07	1.521501e-06
TCGA-CG-4465-01A-01D-1158-08	753	732	21	560	2.788845e-02	0	coding only	34834024	167	535	4.794163e-06	1.535855e-05
TCGA-CG-4466-01A-01D-1158-08	224	216	8	165	3.571429e-02	1	exome+100bp flanks	34834024	48	160	1.377963e-06	4.593210e-06
TCGA-CG-4469-01A-01D-1158-08	345	340	5	268	1.449275e-02	0	coding only	34834024	69	261	1.980822e-06	7.492674e-06
TCGA-CG-4474-01A-02D-1158-08	114	112	2	85	1.754386e-02	0	coding only	34834024	24	80	6.889816e-07	2.296605e-06
TCGA-CG-4475-01A-01D-1158-08	61	61	0	45	0	0	coding only	34834024	16	40	4.593210e-07	1.148303e-06
TCGA-CG-4476-01A-01D-1158-08	140	139	1	113	7.142857e-03	0	coding only	34834024	25	105	7.176891e-07	3.014294e-06
TCGA-CG-4477-01A-01D-1158-08	146	143	3	124	2.054795e-02	0	coding only	34834024	19	120	5.454437e-07	3.444908e-06
TCGA-CG-5717-01A-11D-1600-08	201	197	4	149	1.990050e-02	0	coding only	34834024	48	142	1.377963e-06	4.076474e-06
TCGA-CG-5718-01A-11D-1600-08	100	98	2	77	2.000000e-02	0	coding only	34834024	21	71	6.028589e-07	2.038237e-06
TCGA-CG-5719-01A-11D-1600-08	109	108	1	79	9.174312e-03	0	coding only	34834024	27	78	7.751042e-07	2.239190e-06
TCGA-CG-5720-01A-11D-1600-08	110	110	0	79	0	0	coding only	34834024	31	74	8.899345e-07	2.124360e-06
TCGA-CG-5721-01A-11D-1600-08	5061	4963	98	3724	1.936376e-02	0	coding only	34834024	1173	3554	3.367397e-05	1.020267e-04
TCGA-CG-5722-01A-21D-1600-08	104	103	1	76	9.615385e-03	0	coding only	34834024	25	74	7.176891e-07	2.124360e-06
TCGA-CG-5723-01A-11D-1600-08	2081	2025	56	1552	2.691014e-02	0	coding only	34834024	455	1488	1.306194e-05	4.271686e-05
TCGA-CG-5724-01A-11D-1600-08	132	129	3	98	2.272727e-02	0	coding only	34834024	29	92	8.325194e-07	2.641096e-06
TCGA-CG-5726-01A-11D-1600-08	1691	1655	36	1246	2.128918e-02	0	coding only	34834024	393	1179	1.128207e-05	3.384622e-05
TCGA-CG-5727-01A-11D-1600-08	181	178	3	129	1.657459e-02	0	coding only	34834024	49	124	1.406671e-06	3.559738e-06
TCGA-CG-5728-01A-11D-1600-08	1709	1654	55	1241	3.218256e-02	1	exome+100bp flanks	34834024	396	1179	1.136820e-05	3.384622e-05
TCGA-CG-5730-01A-11D-1600-08	195	192	3	133	1.538462e-02	0	coding only	34834024	56	126	1.607624e-06	3.617153e-06
TCGA-CG-5732-01A-11D-1600-08	81	81	0	58	0	0	coding only	34834024	22	56	6.315664e-07	1.607624e-06
TCGA-CG-5733-01A-11D-1600-08	1405	1372	33	1044	2.348754e-02	0	coding only	34834024	312	1003	8.956760e-06	2.879369e-05
TCGA-CG-5734-01A-11D-1600-08	121	121	0	94	0	0	coding only	34834024	27	88	7.751042e-07	2.526266e-06
TCGA-D7-5577-01A-01D-1600-08	134	130	4	105	2.985075e-02	0	coding only	34834024	25	100	7.176891e-07	2.870756e-06
TCGA-D7-5578-01A-01D-1600-08	289	284	5	201	1.730104e-02	0	coding only	34834024	82	194	2.354020e-06	5.569268e-06
TCGA-D7-5579-01A-01D-1600-08	173	170	3	133	1.734104e-02	0	coding only	34834024	34	127	9.760572e-07	3.645861e-06
TCGA-D7-6518-01A-11D-1800-08	113	113	0	83	0	0	coding only	34834024	29	78	8.325194e-07	2.239190e-06
TCGA-D7-6519-01A-11D-1800-08	64	63	1	49	1.562500e-02	0	coding only	34834024	12	47	3.444908e-07	1.349256e-06
TCGA-D7-6520-01A-11D-1800-08	74	74	0	55	0	0	coding only	34834024	17	55	4.880286e-07	1.578916e-06
TCGA-D7-6521-01A-11D-1800-08	93	93	0	72	0	0	coding only	34834024	21	68	6.028589e-07	1.952114e-06
TCGA-D7-6522-01A-11D-1800-08	84	83	1	61	1.190476e-02	0	coding only	34834024	22	58	6.315664e-07	1.665039e-06
TCGA-D7-6524-01A-11D-1800-08	120	116	4	86	3.333333e-02	0	coding only	34834024	28	81	8.038118e-07	2.325313e-06
TCGA-D7-6525-01A-11D-1800-08	186	184	2	132	1.075269e-02	0	coding only	34834024	51	129	1.464086e-06	3.703276e-06
TCGA-D7-6526-01A-11D-1800-08	247	243	4	178	1.619433e-02	0	coding only	34834024	60	170	1.722454e-06	4.880286e-06
TCGA-D7-6527-01A-11D-1800-08	251	245	6	194	2.390438e-02	0	coding only	34834024	50	188	1.435378e-06	5.397022e-06
TCGA-D7-6528-01A-11D-1800-08	393	388	5	304	1.272265e-02	0	coding only	34834024	75	289	2.153067e-06	8.296486e-06
TCGA-D7-6815-01A-11D-1882-08	170	165	5	119	2.941176e-02	0	coding only	34834024	44	114	1.263133e-06	3.272662e-06
TCGA-D7-6817-01A-11D-1882-08	102	98	4	77	3.921569e-02	0	coding only	34834024	20	75	5.741513e-07	2.153067e-06
TCGA-D7-6818-01A-11D-1882-08	175	173	2	143	1.142857e-02	0	coding only	34834024	29	139	8.325194e-07	3.990352e-06
TCGA-D7-6820-01A-11D-1882-08	111	111	0	79	0	0	coding only	34834024	31	76	8.899345e-07	2.181775e-06
TCGA-D7-6822-01A-11D-1882-08	278	276	2	227	7.194245e-03	0	coding only	34834024	46	221	1.320548e-06	6.344372e-06
TCGA-D7-8570-01A-11D-2340-08	146	145	1	109	6.849315e-03	0	coding only	34834024	35	106	1.004765e-06	3.043002e-06
TCGA-D7-8572-01A-11D-2340-08	196	195	1	148	5.102041e-03	0	coding only	34834024	47	144	1.349256e-06	4.133889e-06
TCGA-D7-8573-01A-11D-2340-08	96	95	1	70	1.041667e-02	0	coding only	34834024	24	68	6.889816e-07	1.952114e-06
TCGA-D7-8574-01A-13D-2340-08	35	35	0	24	0	0	coding only	34834024	10	23	2.870756e-07	6.602740e-07
TCGA-D7-8575-01A-11D-2340-08	59	59	0	49	0	0	coding only	34834024	10	47	2.870756e-07	1.349256e-06
TCGA-D7-8576-01A-11D-2340-08	69	69	0	49	0	0	coding only	34834024	20	42	5.741513e-07	1.205718e-06
TCGA-D7-8578-01A-21D-2340-08	59	59	0	47	0	0	coding only	34834024	12	44	3.444908e-07	1.263133e-06
TCGA-D7-8579-01A-11D-2340-08	120	119	1	87	8.333333e-03	0	coding only	34834024	30	81	8.612269e-07	2.325313e-06
TCGA-D7-A4YT-01A-11D-A25D-08	332	330	2	242	6.024096e-03	0	coding only	34834024	88	228	2.526266e-06	6.545325e-06
TCGA-D7-A4YU-01A-21D-A25D-08	241	238	3	193	1.244813e-02	0	coding only	34834024	43	181	1.234425e-06	5.196069e-06
TCGA-D7-A4YV-01A-11D-A25D-08	1064	1039	25	786	2.349624e-02	0	coding only	34834024	240	749	6.889816e-06	2.150197e-05
TCGA-D7-A4YX-01A-11D-A25D-08	91	90	1	69	1.098901e-02	0	coding only	34834024	21	66	6.028589e-07	1.894699e-06
TCGA-D7-A4YY-01A-11D-A25D-08	574	564	10	402	1.742160e-02	0	coding only	34834024	157	376	4.507088e-06	1.079404e-05
TCGA-D7-A4Z0-01A-22D-A25D-08	334	327	7	263	2.095808e-02	0	coding only	34834024	60	251	1.722454e-06	7.205599e-06
TCGA-EQ-5647-01A-01D-1600-08	102	100	2	70	1.960784e-02	0	coding only	34834024	29	67	8.325194e-07	1.923407e-06
TCGA-EQ-8122-01A-11D-2340-08	211	203	8	154	3.791469e-02	1	exome+100bp flanks	34834024	47	146	1.349256e-06	4.191304e-06
TCGA-EQ-A4SO-01A-11D-A25D-08	199	199	0	158	0	0	coding only	34834024	39	152	1.119595e-06	4.363550e-06
TCGA-F1-6177-01A-11D-1800-08	1585	1544	41	1171	2.586751e-02	0	coding only	34834024	359	1108	1.030602e-05	3.180798e-05
TCGA-F1-6874-01A-11D-1882-08	1117	1096	21	836	1.880036e-02	0	coding only	34834024	246	796	7.062061e-06	2.285122e-05
TCGA-F1-6875-01A-11D-2053-08	98	98	0	76	0	0	coding only	34834024	21	73	6.028589e-07	2.095652e-06
TCGA-F1-A448-01A-11D-A24D-08	685	675	10	486	1.459854e-02	0	coding only	34834024	181	456	5.196069e-06	1.309065e-05
TCGA-FP-7735-01A-11D-2053-08	72	71	1	54	1.388889e-02	0	coding only	34834024	15	50	4.306135e-07	1.435378e-06
TCGA-FP-7829-01A-11D-2053-08	284	279	5	211	1.760563e-02	0	coding only	34834024	68	200	1.952114e-06	5.741513e-06
TCGA-FP-7916-01A-11D-2201-08	108	108	0	81	0	0	coding only	34834024	26	76	7.463967e-07	2.181775e-06
TCGA-FP-7998-01A-11D-2201-08	80	78	2	60	2.500000e-02	0	coding only	34834024	17	59	4.880286e-07	1.693746e-06
TCGA-FP-8099-01A-11D-2340-08	156	155	1	108	6.410256e-03	0	coding only	34834024	44	104	1.263133e-06	2.985587e-06
TCGA-FP-8209-01A-11D-2340-08	2	2	0	1	0	0	coding only	34834024	1	1	2.870756e-08	2.870756e-08
TCGA-FP-8210-01A-11D-2340-08	6	6	0	5	0	0	coding only	34834024	1	5	2.870756e-08	1.435378e-07
TCGA-FP-8211-01A-11D-2340-08	117	115	2	98	1.709402e-02	0	coding only	34834024	16	95	4.593210e-07	2.727219e-06
TCGA-FP-8631-01A-11D-2394-08	108	107	1	74	9.259259e-03	0	coding only	34834024	31	73	8.899345e-07	2.095652e-06
TCGA-FP-A4BE-01A-12D-A24D-08	1799	1767	32	1339	1.778766e-02	0	coding only	34834024	405	1288	1.162656e-05	3.697534e-05
TCGA-FP-A4BF-01A-12D-A24D-08	124	124	0	93	0	0	coding only	34834024	29	90	8.325194e-07	2.583681e-06
TCGA-HF-7132-01A-11D-2053-08	1493	1467	26	1098	1.741460e-02	0	coding only	34834024	350	1048	1.004765e-05	3.008553e-05
TCGA-HF-7133-01A-11D-2053-08	87	86	1	67	1.149425e-02	0	coding only	34834024	16	62	4.593210e-07	1.779869e-06
TCGA-HF-7136-01A-11D-2053-08	93	93	0	75	0	0	coding only	34834024	18	71	5.167362e-07	2.038237e-06
TCGA-HJ-7597-01A-21D-2201-08	946	937	9	681	9.513742e-03	0	coding only	34834024	249	650	7.148184e-06	1.865992e-05
TCGA-HU-8243-01A-11D-2340-08	144	142	2	106	1.388889e-02	0	coding only	34834024	35	100	1.004765e-06	2.870756e-06
TCGA-HU-8245-01A-11D-2340-08	78	77	1	62	1.282051e-02	0	coding only	34834024	14	56	4.019059e-07	1.607624e-06
TCGA-HU-8249-01A-11D-2340-08	166	164	2	121	1.204819e-02	0	coding only	34834024	43	116	1.234425e-06	3.330078e-06
TCGA-HU-8602-01A-11D-2394-08	1898	1868	30	1379	1.580611e-02	0	coding only	34834024	465	1312	1.334902e-05	3.766432e-05
TCGA-HU-8604-01A-11D-2394-08	235	233	2	171	8.510638e-03	0	coding only	34834024	60	164	1.722454e-06	4.708041e-06
TCGA-HU-8608-01A-11D-2394-08	109	109	0	87	0	0	coding only	34834024	21	84	6.028589e-07	2.411435e-06
TCGA-HU-8610-01A-22D-2394-08	74	73	1	60	1.351351e-02	0	coding only	34834024	13	58	3.731983e-07	1.665039e-06
TCGA-HU-A4G2-01A-11D-A25D-08	57	57	0	40	0	0	coding only	34834024	15	40	4.306135e-07	1.148303e-06
TCGA-HU-A4G3-01A-11D-A24D-08	118	117	1	88	8.474576e-03	0	coding only	34834024	28	84	8.038118e-07	2.411435e-06
TCGA-HU-A4G6-01A-11D-A24D-08	95	93	2	69	2.105263e-02	0	coding only	34834024	23	66	6.602740e-07	1.894699e-06
TCGA-HU-A4G8-01A-11D-A25D-08	1773	1742	31	1307	1.748449e-02	0	coding only	34834024	419	1259	1.202847e-05	3.614282e-05
TCGA-HU-A4G9-01A-11D-A24D-08	944	921	23	695	2.436441e-02	0	coding only	34834024	217	662	6.229542e-06	1.900441e-05
TCGA-HU-A4GC-01A-12D-A25D-08	167	164	3	120	1.796407e-02	0	coding only	34834024	42	115	1.205718e-06	3.301370e-06
TCGA-HU-A4GD-01A-11D-A25D-08	96	94	2	71	2.083333e-02	0	coding only	34834024	22	71	6.315664e-07	2.038237e-06
TCGA-HU-A4GF-01A-11D-A24D-08	152	150	2	118	1.315789e-02	0	coding only	34834024	31	112	8.899345e-07	3.215247e-06
TCGA-HU-A4GH-01A-11D-A24D-08	852	840	12	691	1.408451e-02	0	coding only	34834024	135	656	3.875521e-06	1.883216e-05
TCGA-HU-A4GN-01A-11D-A25D-08	1399	1375	24	1025	1.715511e-02	0	coding only	34834024	338	977	9.703157e-06	2.804729e-05
TCGA-HU-A4GP-01A-11D-A25D-08	214	212	2	152	9.345794e-03	0	coding only	34834024	57	145	1.636331e-06	4.162597e-06
TCGA-HU-A4GQ-01A-11D-A25D-08	2188	2128	60	1600	2.742230e-02	0	coding only	34834024	507	1518	1.455474e-05	4.357808e-05
TCGA-HU-A4GT-01A-21D-A25D-08	2011	1966	45	1490	2.237693e-02	0	coding only	34834024	449	1420	1.288970e-05	4.076474e-05
TCGA-HU-A4GU-01A-11D-A25D-08	1761	1727	34	1270	1.930721e-02	0	coding only	34834024	435	1212	1.248779e-05	3.479357e-05
TCGA-HU-A4GX-01A-12D-A25D-08	1473	1440	33	1094	2.240326e-02	0	coding only	34834024	328	1051	9.416081e-06	3.017165e-05
TCGA-HU-A4GY-01A-21D-A24D-08	74	72	2	54	2.702703e-02	0	coding only	34834024	16	52	4.593210e-07	1.492793e-06
TCGA-HU-A4H0-01A-11D-A25D-08	195	194	1	147	5.128205e-03	0	coding only	34834024	47	143	1.349256e-06	4.105182e-06
TCGA-HU-A4H2-01A-11D-A25D-08	189	183	6	142	3.174603e-02	1	exome+100bp flanks	34834024	39	137	1.119595e-06	3.932936e-06
TCGA-HU-A4H3-01A-21D-A25D-08	1088	1062	26	815	2.389706e-02	0	coding only	34834024	228	771	6.545325e-06	2.213353e-05
TCGA-HU-A4H4-01A-21D-A25D-08	799	784	15	577	1.877347e-02	0	coding only	34834024	196	552	5.626683e-06	1.584658e-05
TCGA-HU-A4H5-01A-21D-A25D-08	301	297	4	237	1.328904e-02	0	coding only	34834024	56	231	1.607624e-06	6.631447e-06
TCGA-HU-A4H6-01A-11D-A25D-08	102	100	2	71	1.960784e-02	0	coding only	34834024	28	68	8.038118e-07	1.952114e-06
TCGA-HU-A4H8-01A-11D-A25D-08	1436	1400	36	1052	2.506964e-02	0	coding only	34834024	339	1008	9.731864e-06	2.893723e-05
TCGA-HU-A4HD-01A-11D-A25D-08	200	197	3	148	1.500000e-02	0	coding only	34834024	47	141	1.349256e-06	4.047767e-06
TCGA-IN-7806-01A-11D-2053-08	87	87	0	69	0	0	coding only	34834024	15	69	4.306135e-07	1.980822e-06
TCGA-IN-7808-01A-11D-2201-08	122	120	2	94	1.639344e-02	0	coding only	34834024	25	91	7.176891e-07	2.612388e-06
TCGA-IN-8462-01A-11D-2340-08	136	134	2	101	1.470588e-02	0	coding only	34834024	33	97	9.473496e-07	2.784634e-06
TCGA-IN-8663-01A-11D-2394-08	188	186	2	137	1.063830e-02	0	coding only	34834024	47	132	1.349256e-06	3.789399e-06
TCGA-IP-7968-01A-11D-2201-08	130	128	2	102	1.538462e-02	0	coding only	34834024	25	98	7.176891e-07	2.813341e-06