Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q22	42 (75%)	14	0.50655	0.759	0.22648	0.627	0.16309	0.573	0.4873	0.751	0.47486	0.748	0.29584	0.681	0.18654	0.593	0.18673	0.593	0.32954	0.681	0.26456	0.661
amp_2p14	28 (50%)	28	0.55883	0.784	0.02579	0.315	0.84618	0.951	0.48908	0.751	0.0069999	0.251	0.079249	0.428	0.48582	0.751	0.2451	0.649	0.22487	0.627	0.35966	0.681
amp_2q13	29 (52%)	27	0.53174	0.778	0.01598	0.291	0.1938	0.597	0.48577	0.751	0.0468	0.389	0.31821	0.681	1	1	0.66358	0.856	0.73445	0.903	0.73146	0.901
amp_3p25.1	20 (36%)	36	0.01201	0.278	0.51674	0.769	0.17455	0.579	0.053479	0.401	0.30073	0.681	0.11357	0.505	0.2292	0.627	0.064669	0.403	0.12427	0.505	0.068109	0.403
amp_3q26.2	37 (66%)	19	0.0050799	0.207	0.0050899	0.207	0.17831	0.58	0.12711	0.51	0.090319	0.455	0.15808	0.564	0.34715	0.681	0.23884	0.639	0.46189	0.738	0.18381	0.59
amp_4p16.3	25 (45%)	31	0.02767	0.318	0.12976	0.517	0.65127	0.848	0.0094399	0.274	0.38603	0.688	0.18766	0.593	0.97626	1	0.28958	0.681	0.50381	0.759	0.53076	0.778
amp_5p13.2	26 (46%)	30	0.00175	0.133	0.57169	0.789	0.02948	0.322	0.30732	0.681	0.24602	0.649	0.056789	0.401	0.92989	0.98	0.04546	0.389	0.47933	0.749	0.17724	0.58
amp_6p24.2	37 (66%)	19	0.10617	0.499	0.97267	1	0.44812	0.727	0.32869	0.681	0.68807	0.88	0.35483	0.681	0.87752	0.965	0.5003	0.758	0.87856	0.965	0.77061	0.907
amp_8p11.21	33 (59%)	23	0.54978	0.783	0.62596	0.831	0.84632	0.951	0.092369	0.462	0.67771	0.87	0.55792	0.784	0.62131	0.831	1	1	0.77902	0.912	0.59996	0.813
amp_8q11.23	38 (68%)	18	0.01316	0.278	0.2256	0.627	0.12119	0.505	0.20239	0.608	0.19947	0.603	0.1658	0.573	0.77182	0.907	0.92161	0.978	0.62038	0.831	0.85719	0.958
amp_8q24.21	42 (75%)	14	0.00202	0.137	0.75667	0.907	0.94282	0.99	0.95229	0.996	0.19218	0.597	0.33893	0.681	0.03996	0.373	0.03106	0.322	0.0057199	0.218	0.01494	0.291
amp_8q24.21	40 (71%)	16	0.00056999	0.102	0.35791	0.681	0.8014	0.929	0.64623	0.848	0.076449	0.422	0.11772	0.505	0.0472	0.389	0.064089	0.403	0.0076699	0.26	0.02148	0.291
amp_10q22.2	26 (46%)	30	0.31147	0.681	0.48866	0.751	0.084529	0.435	0.34701	0.681	0.96531	1	0.92359	0.978	0.72505	0.901	0.74106	0.905	1	1	0.42788	0.71
amp_11q13.1	19 (34%)	37	0.77877	0.912	0.64768	0.848	0.051729	0.401	0.26955	0.662	0.32647	0.681	0.30369	0.681	0.76003	0.907	1	1	0.82223	0.941	0.97412	1
amp_12q12	22 (39%)	34	0.03142	0.322	0.10643	0.499	0.55348	0.783	0.077399	0.422	0.25654	0.653	0.40856	0.704	0.92779	0.98	1	1	0.88187	0.965	0.95393	0.996
amp_12q15	17 (30%)	39	0.59024	0.804	0.37754	0.687	0.83906	0.946	0.70835	0.895	0.25485	0.653	0.70245	0.891	0.79926	0.929	0.16739	0.574	1	1	0.23074	0.628
amp_13q31.3	25 (45%)	31	0.52427	0.776	0.44453	0.727	0.056309	0.401	0.3864	0.688	0.13648	0.527	0.1176	0.505	0.086179	0.438	0.03724	0.361	0.00237	0.145	0.053129	0.401
amp_16p11.2	20 (36%)	36	0.02685	0.315	0.27997	0.67	0.0317	0.322	0.066439	0.403	0.65195	0.848	0.071939	0.415	0.76156	0.907	0.40804	0.704	0.51705	0.769	0.20849	0.614
amp_17q12	27 (48%)	29	0.44514	0.727	0.19004	0.597	0.9762	1	0.76413	0.907	0.33726	0.681	0.46188	0.738	0.33792	0.681	0.78701	0.92	0.60931	0.824	1	1
amp_17q25.1	32 (57%)	24	0.49635	0.755	0.01142	0.278	0.31828	0.681	0.72597	0.901	0.63229	0.835	0.30458	0.681	0.68413	0.877	0.71834	0.901	0.32466	0.681	0.65754	0.853
amp_19p13.2	19 (34%)	37	0.3318	0.681	0.27125	0.662	0.37312	0.687	0.66165	0.856	0.79218	0.924	0.32217	0.681	0.34602	0.681	0.27622	0.666	0.14591	0.543	0.26854	0.662
amp_19q12	45 (80%)	11	0.00131	0.133	0.00015	0.0915	0.39294	0.692	0.24896	0.652	0.19294	0.597	0.01924	0.291	0.64594	0.848	0.50074	0.758	0.23188	0.629	0.43336	0.716
amp_20q11.21	48 (86%)	8	0.00463	0.207	0.16624	0.573	0.21246	0.617	0.41841	0.71	0.54486	0.783	0.42356	0.71	0.16033	0.569	0.13912	0.531	0.056709	0.401	0.27293	0.663
amp_20q11.21	48 (86%)	8	0.10147	0.487	0.2575	0.653	0.47887	0.749	0.41606	0.71	0.19402	0.597	0.31545	0.681	0.17878	0.58	0.34942	0.681	0.37204	0.687	0.56102	0.785
amp_xp11.21	28 (50%)	28	0.059019	0.403	0.56791	0.787	0.01976	0.291	0.15717	0.564	0.04847	0.394	0.29967	0.681	0.02815	0.318	0.10142	0.487	0.11391	0.505	0.065149	0.403
del_1p36.21	19 (34%)	37	0.72674	0.901	0.37797	0.687	0.56723	0.787	0.89764	0.965	0.34564	0.681	0.082119	0.434	0.13377	0.525	0.02392	0.313	0.073539	0.415	0.059279	0.403
del_2q22.1	11 (20%)	45	0.91501	0.976	0.54512	0.783	0.42132	0.71	0.4723	0.747	0.52751	0.778	0.16836	0.574	0.54887	0.783	0.55476	0.783	0.25666	0.653	0.92071	0.978
del_3p14.2	37 (66%)	19	0.72766	0.901	0.70049	0.89	0.54025	0.783	0.76965	0.907	0.80833	0.936	0.47207	0.747	0.62322	0.831	0.76705	0.907	0.8724	0.964	0.90038	0.965
del_3q13.31	22 (39%)	34	0.20411	0.61	0.04585	0.389	0.2467	0.649	0.11953	0.505	0.88061	0.965	0.066699	0.403	1	1	0.45695	0.735	0.35436	0.681	0.82065	0.941
del_4q22.1	37 (66%)	19	0.16503	0.573	0.055019	0.401	0.42229	0.71	0.23575	0.636	0.02459	0.313	0.15473	0.564	0.01318	0.278	0.12637	0.51	0.03294	0.329	0.056229	0.401
del_4q34.3	37 (66%)	19	0.01785	0.291	0.01953	0.291	0.37411	0.687	0.13521	0.525	0.01189	0.278	0.0411	0.373	0.00324	0.18	0.19981	0.603	0.0050699	0.207	0.12401	0.505
del_5q12.1	26 (46%)	30	0.62792	0.831	0.093249	0.462	0.47251	0.747	0.15809	0.564	0.58688	0.803	0.45123	0.728	0.55103	0.783	0.2951	0.681	0.25428	0.653	0.44644	0.727
del_6q26	10 (18%)	46	0.41804	0.71	0.5406	0.783	0.42489	0.71	0.080829	0.433	0.12226	0.505	0.69997	0.89	0.32864	0.681	0.2995	0.681	0.81678	0.941	0.31305	0.681
del_7q11.22	12 (21%)	44	0.71483	0.901	0.51147	0.765	0.32566	0.681	0.72268	0.901	0.76065	0.907	0.83609	0.946	0.85907	0.958	0.53213	0.778	0.83808	0.946	0.7501	0.907
del_7q36.2	20 (36%)	36	0.3242	0.681	0.16968	0.575	0.82855	0.943	0.52152	0.774	0.49558	0.755	0.27556	0.666	0.40024	0.696	0.04631	0.389	0.32235	0.681	0.082719	0.434
del_8p23.2	33 (59%)	23	0.00142	0.133	0.42845	0.71	0.22126	0.627	0.26965	0.662	0.35098	0.681	0.35986	0.681	0.73988	0.905	0.33018	0.681	0.59673	0.811	0.55695	0.784
del_9p23	34 (61%)	22	0.29829	0.681	0.12186	0.505	0.03081	0.322	0.01608	0.291	0.63477	0.836	0.32174	0.681	0.50249	0.759	0.4262	0.71	0.49069	0.752	0.12086	0.505
del_9q21.13	39 (70%)	17	0.34036	0.681	0.3259	0.681	0.97258	1	0.45113	0.728	0.21231	0.617	0.25672	0.653	0.47979	0.749	0.31996	0.681	0.74195	0.905	0.39781	0.693
del_9q33.3	39 (70%)	17	0.66862	0.86	0.072889	0.415	0.1974	0.602	0.04162	0.373	0.11343	0.505	0.13929	0.531	0.96653	1	0.11219	0.505	1	1	0.25691	0.653
del_10q23.31	20 (36%)	36	0.14868	0.55	0.10612	0.499	0.97549	1	0.98022	1	0.12275	0.505	0.24481	0.649	0.76111	0.907	0.85233	0.956	0.76832	0.907	0.82783	0.943
del_11p15.5	25 (45%)	31	0.58878	0.803	0.76908	0.907	0.37807	0.687	0.4964	0.755	0.89892	0.965	0.89532	0.965	0.72593	0.901	0.89634	0.965	0.83058	0.943	0.91519	0.976
del_11q14.1	26 (46%)	30	0.44799	0.727	0.17121	0.577	0.55158	0.783	0.229	0.627	1	1	0.92251	0.978	0.27031	0.662	0.26243	0.661	0.22644	0.627	0.074109	0.415
del_11q23.2	26 (46%)	30	1	1	0.11721	0.505	0.36512	0.684	0.22813	0.627	0.34489	0.681	0.87015	0.964	0.35723	0.681	0.86097	0.958	0.39489	0.692	0.35996	0.681
del_12q23.1	20 (36%)	36	0.88124	0.965	0.90018	0.965	0.79847	0.929	0.062999	0.403	0.65132	0.848	0.75066	0.907	0.94893	0.995	0.33964	0.681	1	1	0.54694	0.783
del_12q24.31	20 (36%)	36	0.4427	0.727	0.82456	0.942	0.11917	0.505	0.00161	0.133	0.15448	0.564	0.25808	0.653	0.56558	0.787	0.88914	0.965	0.36804	0.686	0.92997	0.98
del_13q12.11	30 (54%)	26	0.29347	0.681	0.01916	0.291	0.22859	0.627	0.069789	0.409	0.37499	0.687	0.20871	0.614	0.72796	0.901	0.02511	0.313	0.34527	0.681	0.062559	0.403
del_13q14.2	32 (57%)	24	0.4392	0.724	0.00042	0.102	0.97684	1	0.41581	0.71	0.01324	0.278	0.01955	0.291	0.4775	0.749	0.15549	0.564	0.04629	0.389	0.19482	0.597
del_14q21.1	28 (50%)	28	0.89127	0.965	0.050039	0.401	0.75575	0.907	0.13513	0.525	0.063399	0.403	0.055729	0.401	0.37847	0.687	0.38187	0.688	0.83504	0.946	0.36891	0.686
del_15q11.2	41 (73%)	15	0.74833	0.907	0.097579	0.476	0.3082	0.681	0.58802	0.803	0.55246	0.783	0.62371	0.831	0.14347	0.537	0.9077	0.971	0.32596	0.681	0.70711	0.895
del_15q15.1	43 (77%)	13	0.16384	0.573	0.03123	0.322	0.97009	1	0.0411	0.373	0.34956	0.681	0.76509	0.907	0.11949	0.505	0.34441	0.681	0.066899	0.403	0.20812	0.614
del_16p13.3	33 (59%)	23	0.66312	0.856	0.54963	0.783	0.26866	0.662	0.26334	0.661	0.56968	0.788	0.22938	0.627	0.34715	0.681	0.38982	0.69	0.3812	0.688	0.71674	0.901
del_16q23.1	39 (70%)	17	0.62802	0.831	0.42237	0.71	0.82173	0.941	0.27883	0.67	0.3965	0.693	0.39482	0.692	0.86596	0.962	0.81122	0.937	0.17402	0.579	0.61954	0.831
del_17p13.1	42 (75%)	14	0.14108	0.535	0.055339	0.401	0.073339	0.415	0.23784	0.639	0.057169	0.401	0.42397	0.71	0.13333	0.525	0.18125	0.585	0.02023	0.291	0.083289	0.434
del_17q21.32	19 (34%)	37	0.14298	0.537	0.7651	0.907	1	1	0.75388	0.907	0.17704	0.58	0.066229	0.403	0.2233	0.627	0.2095	0.614	0.38518	0.688	0.7392	0.905
del_18q22.2	26 (46%)	30	0.33272	0.681	0.33948	0.681	0.28186	0.672	0.53738	0.783	0.50522	0.759	0.36179	0.681	0.02078	0.291	0.077549	0.422	0.0132	0.278	0.02491	0.313
del_19p13.3	47 (84%)	9	0.063059	0.403	0.02027	0.291	0.61464	0.829	0.12157	0.505	0.096809	0.476	0.3823	0.688	0.01508	0.291	0.084859	0.435	0.0089899	0.274	0.11474	0.505
del_19q13.33	17 (30%)	39	0.31799	0.681	0.0088199	0.274	0.17351	0.579	0.063929	0.403	0.00066999	0.102	0.03605	0.355	0.22411	0.627	0.03793	0.362	0.36576	0.684	0.01229	0.278
del_20p12.1	9 (16%)	47	0.53875	0.783	0.69974	0.89	0.021	0.291	0.01933	0.291	0.39015	0.69	0.52807	0.778	0.22008	0.627	0.33784	0.681	0.36183	0.681	0.46819	0.746
del_22q13.31	40 (71%)	16	0.29851	0.681	0.40633	0.704	0.02664	0.315	0.30721	0.681	0.89251	0.965	0.45978	0.738	0.578	0.796	0.34914	0.681	0.85711	0.958	0.58728	0.803
del_xp21.1	18 (32%)	38	0.93692	0.985	0.42184	0.71	0.48651	0.751	0.89587	0.965	0.81847	0.941	0.87055	0.964	0.36152	0.681	1	1	1	1	0.89969	0.965
del_xq25	23 (41%)	33	0.62351	0.831	0.31078	0.681	0.29783	0.681	0.068079	0.403	0.11137	0.505	0.89877	0.965	0.72933	0.901	0.5671	0.787	0.28303	0.672	0.387	0.688