Broad GDAC Analyses Status
analyses__2016_01_28__laml Run for Tumor Type: LAML

CohortBCRClinicalCNLowPMethylationmRNAmRNASeqmiRmiRSeqRPPAMAFrawMAF
LAML20020019701940179018801970

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1TB-Aggregate_AnalysisFeatures00010
2TB-Aggregate_Gene_Status00010
3TB-Aggregate_Molecular_Subtype_Clusters00010
4TB-Append_CustomClinical00010
5TB-CoMut2.010000
6TB-CoMut2CV00010
7TB-CoMutCV00010
8TB-CopyNumber_Clustering_CNMF00010
9TB-CopyNumber_Clustering_CNMF_thresholded00010
10TB-CopyNumber_Gistic200010
11TB-CopyNumber_Gistic2_Postprocess_Focal00010
12TB-CopyNumberLowPass_Gistic210000
13TB-Correlate_Clinical_vs_CopyNumber_Arm00010
14TB-Correlate_Clinical_vs_CopyNumber_Focal00010
15TB-Correlate_Clinical_vs_Methylation00010
16TB-Correlate_Clinical_vs_miR10000
17TB-Correlate_Clinical_vs_miRseq00010
18TB-Correlate_Clinical_vs_Molecular_Subtypes00010
19TB-Correlate_Clinical_vs_mRNA10000
20TB-Correlate_Clinical_vs_mRNAseq00010
21TB-Correlate_Clinical_vs_Mutation00010
22TB-Correlate_Clinical_vs_Mutation_APOBEC_Categorical10000
23TB-Correlate_Clinical_vs_Mutation_APOBEC_Continuous10000
24TB-Correlate_Clinical_vs_MutationRate10000
25TB-Correlate_Clinical_vs_RPPA10000
26TB-Correlate_CopyNumber_vs_miR10000
27TB-Correlate_CopyNumber_vs_mRNA10000
28TB-Correlate_CopyNumber_vs_mRNAseq00010
29TB-Correlate_Methylation_vs_mRNA00010
30TB-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
31TB-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
32TB-Correlate_molecularSubtype_vs_Mutation00010
33TB-Correlate_mRNAseq_vs_Mutation_APOBEC10000
34TB-GenerateStickFigures2.010000
35TB-GenerateStickFigures2CV00010
36TB-GenerateStickFiguresCV00010
37TB-LegoPlotter2.010000
38TB-LegoPlotter2CV00010
39TB-LegoPlotterCV00010
40TB-Methylation_Clustering_CNMF00010
41TB-miR_Clustering_CNMF10000
42TB-miR_Clustering_Consensus_Plus10000
43TB-miR_FindDirectTargets10000
44TB-miRseq_Clustering_CNMF00010
45TB-miRseq_Clustering_Consensus_Plus00010
46TB-miRseq_FindDirectTargets10000
47TB-miRseq_Mature_Clustering_CNMF10000
48TB-miRseq_Mature_Clustering_Consensus_Plus10000
49TB-mRNA_Clustering_CNMF10000
50TB-mRNA_Clustering_Consensus_Plus10000
51TB-mRNAseq_Clustering_CNMF00010
52TB-mRNAseq_Clustering_Consensus_Plus00010
53TB-Mutation_APOBEC00010
54TB-Mutation_Assessor00010
55TB-Mutation_CHASM00010
56TB-Mutation_CoOccurrence00010
57TB-Mutation_CoOccurrence_Custom10000
58TB-MutSigNozzleReport2.010000
59TB-MutSigNozzleReport2CV00010
60TB-MutSigNozzleReportCV00010
61TB-MutSigPreprocess2.000010
62TB-MutSigRun2.010000
63TB-MutSigRun2CV00010
64TB-MutSigRunCV00010
65TB-Paradigm_mRNA10000
66TB-Paradigm_mRNA_And_CopyNumber10000
67TB-Paradigm_Prepare_mRNA10000
68TB-Paradigm_Prepare_mRNA_And_Copy_Number10000
69TB-Paradigm_Prepare_RNASeq00010
70TB-Paradigm_Prepare_RNASeq_And_Copy_Number00010
71TB-Paradigm_Preprocess_mRNA10000
72TB-ParadigmPreprocess_mRNA10000
73TB-Paradigm_Preprocess_mRNA_And_Copy_Number10000
74TB-Paradigm_Preprocess_RNASeq00010
75TB-ParadigmPreprocess_RNASeq00010
76TB-Paradigm_Preprocess_RNASeq_And_Copy_Number00010
77TB-Paradigm_Report_Preprocess_mRNA10000
78TB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
79TB-Paradigm_Report_Preprocess_RNASeq00010
80TB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number00010
81TB-Paradigm_RNASeq00010
82TB-Paradigm_RNASeq_And_Copy_Number00010
83TB-Pathway_FindEnrichedGenes10000
84TB-Pathway_GSEA_mRNAseq00010
85TB-Pathway_Hotnet00001
86TB-Pathway_Overlaps_MSigDB_MutSig2CV00010
87TB-Pathway_Paradigm_mRNA10000
88TB-Pathway_Paradigm_mRNA_And_Copy_Number10000
89TB-Pathway_Paradigm_RNASeq00010
90TB-Pathway_Paradigm_RNASeq_And_Copy_Number00010
91TB-ProcessCoverageForMutSig2.000001
92TB-RPPA_Clustering_CNMF10000
93TB-RPPA_Clustering_Consensus_Plus10000
Total3800532

This table generated on Fri Apr 22 16:34:58 2016