Broad GDAC Analyses Status
analyses__2016_01_28__lusc Run for Tumor Type: LUSC

CohortBCRClinicalCNLowPMethylationmRNAmRNASeqmiRmiRSeqRPPAMAFrawMAF
LUSC504504501050315450104783281780

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PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1TP-Aggregate_AnalysisFeatures00010
2TP-Aggregate_Gene_Status00010
3TP-Aggregate_Molecular_Subtype_Clusters00010
4TP-Append_CustomClinical00010
5TP-CoMut2.000001
6TP-CoMut2CV00010
7TP-CoMutCV00010
8TP-CopyNumber_Clustering_CNMF00010
9TP-CopyNumber_Clustering_CNMF_thresholded00010
10TP-CopyNumber_Gistic200010
11TP-CopyNumber_Gistic2_Postprocess_Focal00010
12TP-CopyNumberLowPass_Gistic210000
13TP-Correlate_Clinical_vs_CopyNumber_Arm00010
14TP-Correlate_Clinical_vs_CopyNumber_Focal00010
15TP-Correlate_Clinical_vs_Methylation00010
16TP-Correlate_Clinical_vs_miR10000
17TP-Correlate_Clinical_vs_miRseq00010
18TP-Correlate_Clinical_vs_Molecular_Subtypes00010
19TP-Correlate_Clinical_vs_mRNA00010
20TP-Correlate_Clinical_vs_mRNAseq00010
21TP-Correlate_Clinical_vs_Mutation00010
22TP-Correlate_Clinical_vs_Mutation_APOBEC_Categorical00010
23TP-Correlate_Clinical_vs_Mutation_APOBEC_Continuous00010
24TP-Correlate_Clinical_vs_MutationRate00010
25TP-Correlate_Clinical_vs_RPPA00010
26TP-Correlate_CopyNumber_vs_miR10000
27TP-Correlate_CopyNumber_vs_mRNA00010
28TP-Correlate_CopyNumber_vs_mRNAseq00010
29TP-Correlate_Methylation_vs_mRNA00010
30TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
31TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
32TP-Correlate_molecularSubtype_vs_Mutation00010
33TP-Correlate_mRNAseq_vs_Mutation_APOBEC00010
34TP-GenerateStickFigures2.000010
35TP-GenerateStickFigures2CV00010
36TP-GenerateStickFiguresCV00010
37TP-LegoPlotter2.000010
38TP-LegoPlotter2CV00010
39TP-LegoPlotterCV00010
40TP-Methylation_Clustering_CNMF00010
41TP-miR_Clustering_CNMF10000
42TP-miR_Clustering_Consensus_Plus10000
43TP-miR_FindDirectTargets10000
44TP-miRseq_Clustering_CNMF00010
45TP-miRseq_Clustering_Consensus_Plus00010
46TP-miRseq_FindDirectTargets00010
47TP-miRseq_Mature_Clustering_CNMF00010
48TP-miRseq_Mature_Clustering_Consensus_Plus00010
49TP-mRNA_Clustering_CNMF00010
50TP-mRNA_Clustering_Consensus_Plus00010
51TP-mRNAseq_Clustering_CNMF00010
52TP-mRNAseq_Clustering_Consensus_Plus00010
53TP-Mutation_APOBEC00010
54TP-Mutation_Assessor00010
55TP-Mutation_CHASM00010
56TP-Mutation_CoOccurrence00010
57TP-Mutation_CoOccurrence_Custom10000
58TP-MutSigNozzleReport2.000010
59TP-MutSigNozzleReport2CV00010
60TP-MutSigNozzleReportCV00010
61TP-MutSigPreprocess2.000010
62TP-MutSigRun2.000010
63TP-MutSigRun2CV00010
64TP-MutSigRunCV00010
65TP-Paradigm_mRNA00010
66TP-Paradigm_mRNA_And_CopyNumber00010
67TP-Paradigm_Prepare_mRNA00010
68TP-Paradigm_Prepare_mRNA_And_Copy_Number00010
69TP-Paradigm_Prepare_RNASeq00010
70TP-Paradigm_Prepare_RNASeq_And_Copy_Number00010
71TP-Paradigm_Preprocess_mRNA00010
72TP-ParadigmPreprocess_mRNA00010
73TP-Paradigm_Preprocess_mRNA_And_Copy_Number00010
74TP-Paradigm_Preprocess_RNASeq00010
75TP-ParadigmPreprocess_RNASeq00010
76TP-Paradigm_Preprocess_RNASeq_And_Copy_Number00010
77TP-Paradigm_Report_Preprocess_mRNA00010
78TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber00010
79TP-Paradigm_Report_Preprocess_RNASeq00010
80TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number00010
81TP-Paradigm_RNASeq00010
82TP-Paradigm_RNASeq_And_Copy_Number00010
83TP-Pathway_FindEnrichedGenes00010
84TP-Pathway_GSEA_mRNAseq00010
85TP-Pathway_Hotnet00001
86TP-Pathway_Overlaps_MSigDB_MutSig2CV00010
87TP-Pathway_Paradigm_mRNA00010
88TP-Pathway_Paradigm_mRNA_And_Copy_Number00010
89TP-Pathway_Paradigm_RNASeq00010
90TP-Pathway_Paradigm_RNASeq_And_Copy_Number00010
91TP-ProcessCoverageForMutSig2.000010
92TP-RPPA_Clustering_CNMF00010
93TP-RPPA_Clustering_Consensus_Plus00010
Total700842

This table generated on Fri Apr 22 16:35:02 2016