[1] "ofn"       "-oTACC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/ACC-TP/22541000/ACC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/ACC-TP/22522857/transformed.cor.cli.txt"

nPatients in clinical file=92, in cluster file=90, common to both=90
[1] 44 90
[1] "AMP PEAK  1(1Q22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                         17                          73 
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                         17                          73 
[1] "AMP PEAK  2(4P16.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE 
                           41                            49 
  AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE 
                           41                            49 
[1] "AMP PEAK  3(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(5P15.33) MUTATED AMP PEAK  3(5P15.33) WILD-TYPE 
                            65                             25 
  AMP PEAK  3(5P15.33) MUTATED AMP PEAK  3(5P15.33) WILD-TYPE 
                            65                             25 
[1] "AMP PEAK  4(5Q35.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(5Q35.3) MUTATED AMP PEAK  4(5Q35.3) WILD-TYPE 
                           63                            27 
  AMP PEAK  4(5Q35.3) MUTATED AMP PEAK  4(5Q35.3) WILD-TYPE 
                           63                            27 
[1] "AMP PEAK  5(6P21.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(6P21.31) MUTATED AMP PEAK  5(6P21.31) WILD-TYPE 
                            19                             71 
  AMP PEAK  5(6P21.31) MUTATED AMP PEAK  5(6P21.31) WILD-TYPE 
                            19                             71 
[1] "AMP PEAK  6(6Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE 
                           19                            71 
  AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE 
                           19                            71 
[1] "AMP PEAK  7(7P22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(7P22.1) MUTATED AMP PEAK  7(7P22.1) WILD-TYPE 
                           54                            36 
  AMP PEAK  7(7P22.1) MUTATED AMP PEAK  7(7P22.1) WILD-TYPE 
                           54                            36 
[1] "AMP PEAK  8(9Q31.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(9Q31.3) MUTATED AMP PEAK  8(9Q31.3) WILD-TYPE 
                           34                            56 
  AMP PEAK  8(9Q31.3) MUTATED AMP PEAK  8(9Q31.3) WILD-TYPE 
                           34                            56 
[1] "AMP PEAK  9(12Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(12Q14.1) MUTATED AMP PEAK  9(12Q14.1) WILD-TYPE 
                            70                             20 
  AMP PEAK  9(12Q14.1) MUTATED AMP PEAK  9(12Q14.1) WILD-TYPE 
                            70                             20 
[1] "AMP PEAK 10(14Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(14Q11.2) MUTATED AMP PEAK 10(14Q11.2) WILD-TYPE 
                            27                             63 
  AMP PEAK 10(14Q11.2) MUTATED AMP PEAK 10(14Q11.2) WILD-TYPE 
                            27                             63 
[1] "AMP PEAK 11(16P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(16P13.3) MUTATED AMP PEAK 11(16P13.3) WILD-TYPE 
                            50                             40 
  AMP PEAK 11(16P13.3) MUTATED AMP PEAK 11(16P13.3) WILD-TYPE 
                            50                             40 
[1] "AMP PEAK 12(16Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(16Q22.1) MUTATED AMP PEAK 12(16Q22.1) WILD-TYPE 
                            56                             34 
  AMP PEAK 12(16Q22.1) MUTATED AMP PEAK 12(16Q22.1) WILD-TYPE 
                            56                             34 
[1] "AMP PEAK 13(16Q24.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(16Q24.2) MUTATED AMP PEAK 13(16Q24.2) WILD-TYPE 
                            49                             41 
  AMP PEAK 13(16Q24.2) MUTATED AMP PEAK 13(16Q24.2) WILD-TYPE 
                            49                             41 
[1] "AMP PEAK 14(17Q25.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(17Q25.3) MUTATED AMP PEAK 14(17Q25.3) WILD-TYPE 
                            18                             72 
  AMP PEAK 14(17Q25.3) MUTATED AMP PEAK 14(17Q25.3) WILD-TYPE 
                            18                             72 
[1] "AMP PEAK 15(19P13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(19P13.12) MUTATED AMP PEAK 15(19P13.12) WILD-TYPE 
                             58                              32 
  AMP PEAK 15(19P13.12) MUTATED AMP PEAK 15(19P13.12) WILD-TYPE 
                             58                              32 
[1] "AMP PEAK 16(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(19Q12) MUTATED AMP PEAK 16(19Q12) WILD-TYPE 
                          56                           34 
  AMP PEAK 16(19Q12) MUTATED AMP PEAK 16(19Q12) WILD-TYPE 
                          56                           34 
[1] "AMP PEAK 17(XP11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(XP11.22) MUTATED AMP PEAK 17(XP11.22) WILD-TYPE 
                            49                             41 
  AMP PEAK 17(XP11.22) MUTATED AMP PEAK 17(XP11.22) WILD-TYPE 
                            49                             41 
[1] "AMP PEAK 18(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(XQ28) MUTATED AMP PEAK 18(XQ28) WILD-TYPE 
                         46                          44 
  AMP PEAK 18(XQ28) MUTATED AMP PEAK 18(XQ28) WILD-TYPE 
                         46                          44 
[1] "DEL PEAK  1(1P36.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            38                             52 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            38                             52 
[1] "DEL PEAK  2(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                           18                            72 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                           18                            72 
[1] "DEL PEAK  3(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           21                            69 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           21                            69 
[1] "DEL PEAK  4(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE 
                            25                             65 
  DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE 
                            25                             65 
[1] "DEL PEAK  5(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE 
                           25                            65 
  DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE 
                           25                            65 
[1] "DEL PEAK  6(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE 
                           28                            62 
  DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE 
                           28                            62 
[1] "DEL PEAK  7(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4Q35.1) MUTATED DEL PEAK  7(4Q35.1) WILD-TYPE 
                           30                            60 
  DEL PEAK  7(4Q35.1) MUTATED DEL PEAK  7(4Q35.1) WILD-TYPE 
                           30                            60 
[1] "DEL PEAK  8(6P24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE 
                           20                            70 
  DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE 
                           20                            70 
[1] "DEL PEAK  9(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                         21                          69 
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                         21                          69 
[1] "DEL PEAK 10(7Q36.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(7Q36.3) MUTATED DEL PEAK 10(7Q36.3) WILD-TYPE 
                           11                            79 
  DEL PEAK 10(7Q36.3) MUTATED DEL PEAK 10(7Q36.3) WILD-TYPE 
                           11                            79 
[1] "DEL PEAK 11(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE 
                         23                          67 
  DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE 
                         23                          67 
[1] "DEL PEAK 12(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                           26                            64 
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                           26                            64 
[1] "DEL PEAK 13(10Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(10Q23.1) MUTATED DEL PEAK 13(10Q23.1) WILD-TYPE 
                            10                             80 
  DEL PEAK 13(10Q23.1) MUTATED DEL PEAK 13(10Q23.1) WILD-TYPE 
                            10                             80 
[1] "DEL PEAK 14(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE 
                            26                             64 
  DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE 
                            26                             64 
[1] "DEL PEAK 15(11Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE 
                            24                             66 
  DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE 
                            24                             66 
[1] "DEL PEAK 16(12Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(12Q14.2) MUTATED DEL PEAK 16(12Q14.2) WILD-TYPE 
                             5                             85 
  DEL PEAK 16(12Q14.2) MUTATED DEL PEAK 16(12Q14.2) WILD-TYPE 
                             5                             85 
[1] "DEL PEAK 17(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE 
                            42                             48 
  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE 
                            42                             48 
[1] "DEL PEAK 18(14Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(14Q21.2) MUTATED DEL PEAK 18(14Q21.2) WILD-TYPE 
                            20                             70 
  DEL PEAK 18(14Q21.2) MUTATED DEL PEAK 18(14Q21.2) WILD-TYPE 
                            20                             70 
[1] "DEL PEAK 19(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE 
                            25                             65 
  DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE 
                            25                             65 
[1] "DEL PEAK 20(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE 
                             8                             82 
  DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE 
                             8                             82 
[1] "DEL PEAK 21(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                            11                             79 
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                            11                             79 
[1] "DEL PEAK 22(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE 
                            24                             66 
  DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE 
                            24                             66 
[1] "DEL PEAK 23(17Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(17Q21.2) MUTATED DEL PEAK 23(17Q21.2) WILD-TYPE 
                            26                             64 
  DEL PEAK 23(17Q21.2) MUTATED DEL PEAK 23(17Q21.2) WILD-TYPE 
                            26                             64 
[1] "DEL PEAK 24(17Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE 
                            24                             66 
  DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE 
                            24                             66 
[1] "DEL PEAK 25(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(20P12.1) MUTATED DEL PEAK 25(20P12.1) WILD-TYPE 
                            12                             78 
  DEL PEAK 25(20P12.1) MUTATED DEL PEAK 25(20P12.1) WILD-TYPE 
                            12                             78 
[1] "DEL PEAK 26(22Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(22Q12.1) MUTATED DEL PEAK 26(22Q12.1) WILD-TYPE 
                            50                             40 
  DEL PEAK 26(22Q12.1) MUTATED DEL PEAK 26(22Q12.1) WILD-TYPE 
                            50                             40 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 90 columns.

Variable 1:'CN_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 90 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=7, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=7, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=8, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  1(1Q22) MUTATED        8      0      0      6      3      0      0
  AMP PEAK  1(1Q22) WILD-TYPE     11     18     13     12      8      6      5
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         8                          11
  CLUS_2                         0                          18
  CLUS_3                         0                          13
  CLUS_4                         6                          12
  CLUS_5                         3                           8
  CLUS_6                         0                           6
  CLUS_7                         0                           5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  1(1Q22) MUTATED        8      5      2      0      0      0      0
  AMP PEAK  1(1Q22) WILD-TYPE      8      9      6     17      9     12      2
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         8                           8
  CLUS_2                         5                           9
  CLUS_3                         2                           6
  CLUS_4                         0                          17
  CLUS_5                         0                           9
  CLUS_6                         0                          12
  CLUS_7                         0                           2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED        3      1      1      3
  AMP PEAK  1(1Q22) WILD-TYPE      7     10      9     11
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         3                           7
  CLUS_2                         1                          10
  CLUS_3                         1                           9
  CLUS_4                         3                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  1(1Q22) MUTATED        2      1      0      2      1      0      1
  AMP PEAK  1(1Q22) WILD-TYPE      6      6      7      1      3      4      5
                             vv
clus                          CLUS_8
  AMP PEAK  1(1Q22) MUTATED        1
  AMP PEAK  1(1Q22) WILD-TYPE      5
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         2                           6
  CLUS_2                         1                           6
  CLUS_3                         0                           7
  CLUS_4                         2                           1
  CLUS_5                         1                           3
  CLUS_6                         0                           4
  CLUS_7                         1                           5
  CLUS_8                         1                           5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED       11      1      1      2
  AMP PEAK  1(1Q22) WILD-TYPE     13     13     15     21
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        11                          13
  CLUS_2                         1                          13
  CLUS_3                         1                          15
  CLUS_4                         2                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED       11      1      2      1
  AMP PEAK  1(1Q22) WILD-TYPE     12     22      5     23
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        11                          12
  CLUS_2                         1                          22
  CLUS_3                         2                           5
  CLUS_4                         1                          23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED        7      7      1
  AMP PEAK  1(1Q22) WILD-TYPE     22     17     24
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         7                          22
  CLUS_2                         7                          17
  CLUS_3                         1                          24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q22) MUTATED        2      5      0      7      1
  AMP PEAK  1(1Q22) WILD-TYPE     14     22     11     13      3
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         2                          14
  CLUS_2                         5                          22
  CLUS_3                         0                          11
  CLUS_4                         7                          13
  CLUS_5                         1                           3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED        5      5      4      1
  AMP PEAK  1(1Q22) WILD-TYPE     11     14     12     25
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         5                          11
  CLUS_2                         5                          14
  CLUS_3                         4                          12
  CLUS_4                         1                          25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q22) MUTATED        1      3      1      7      3      0
  AMP PEAK  1(1Q22) WILD-TYPE      5     21     10      7      8     11
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         1                           5
  CLUS_2                         3                          21
  CLUS_3                         1                          10
  CLUS_4                         7                           7
  CLUS_5                         3                           8
  CLUS_6                         0                          11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(4P16.3) MUTATED        4      8      9      6      4      5
  AMP PEAK  2(4P16.3) WILD-TYPE     15     10      4     12      7      1
                               vv
clus                            CLUS_7
  AMP PEAK  2(4P16.3) MUTATED        5
  AMP PEAK  2(4P16.3) WILD-TYPE      0
D2V1, multiclass
        clus
vv       AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE
  CLUS_1                           4                            15
  CLUS_2                           8                            10
  CLUS_3                           9                             4
  CLUS_4                           6                            12
  CLUS_5                           4                             7
  CLUS_6                           5                             1
  CLUS_7                           5                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(4P16.3) MUTATED        5      4      3     11      6      5
  AMP PEAK  2(4P16.3) WILD-TYPE     11     10      5      6      3      7
                               vv
clus                            CLUS_7
  AMP PEAK  2(4P16.3) MUTATED        1
  AMP PEAK  2(4P16.3) WILD-TYPE      1
D2V2, multiclass
        clus
vv       AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE
  CLUS_1                           5                            11
  CLUS_2                           4                            10
  CLUS_3                           3                             5
  CLUS_4                          11                             6
  CLUS_5                           6                             3
  CLUS_6                           5                             7
  CLUS_7                           1                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(4P16.3) MUTATED        4      6      5      7
  AMP PEAK  2(4P16.3) WILD-TYPE      6      5      5      7
D2V3, multiclass
        clus
vv       AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE
  CLUS_1                           4                             6
  CLUS_2                           6                             5
  CLUS_3                           5                             5
  CLUS_4                           7                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(4P16.3) MUTATED        2      5      2      2      1      3
  AMP PEAK  2(4P16.3) WILD-TYPE      6      2      5      1      3      1
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  2(4P16.3) MUTATED        5      2
  AMP PEAK  2(4P16.3) WILD-TYPE      1      4
D2V4, multiclass
        clus
vv       AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           5                             2
  CLUS_3                           2                             5
  CLUS_4                           2                             1
  CLUS_5                           1                             3
  CLUS_6                           3                             1
  CLUS_7                           5                             1
  CLUS_8                           2                             4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(4P16.3) MUTATED        5      8     11     10
  AMP PEAK  2(4P16.3) WILD-TYPE     19      6      5     13
D2V5, multiclass
        clus
vv       AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE
  CLUS_1                           5                            19
  CLUS_2                           8                             6
  CLUS_3                          11                             5
  CLUS_4                          10                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(4P16.3) MUTATED        5     15      1     13
  AMP PEAK  2(4P16.3) WILD-TYPE     18      8      6     11
D2V6, multiclass
        clus
vv       AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE
  CLUS_1                           5                            18
  CLUS_2                          15                             8
  CLUS_3                           1                             6
  CLUS_4                          13                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(4P16.3) MUTATED       12     11     12
  AMP PEAK  2(4P16.3) WILD-TYPE     17     13     13
D2V7, multiclass
        clus
vv       AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE
  CLUS_1                          12                            17
  CLUS_2                          11                            13
  CLUS_3                          12                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(4P16.3) MUTATED       11     10      6      5      3
  AMP PEAK  2(4P16.3) WILD-TYPE      5     17      5     15      1
D2V8, multiclass
        clus
vv       AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE
  CLUS_1                          11                             5
  CLUS_2                          10                            17
  CLUS_3                           6                             5
  CLUS_4                           5                            15
  CLUS_5                           3                             1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(4P16.3) MUTATED        5      9      8     12
  AMP PEAK  2(4P16.3) WILD-TYPE     11     10      8     14
D2V9, multiclass
        clus
vv       AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE
  CLUS_1                           5                            11
  CLUS_2                           9                            10
  CLUS_3                           8                             8
  CLUS_4                          12                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(4P16.3) MUTATED        4     10      6      4      4      6
  AMP PEAK  2(4P16.3) WILD-TYPE      2     14      5     10      7      5
D2V10, multiclass
        clus
vv       AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE
  CLUS_1                           4                             2
  CLUS_2                          10                            14
  CLUS_3                           6                             5
  CLUS_4                           4                            10
  CLUS_5                           4                             7
  CLUS_6                           6                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(5P15.33) MUTATED        5     18     11     14      7      5
  AMP PEAK  3(5P15.33) WILD-TYPE     14      0      2      4      4      1
                                vv
clus                             CLUS_7
  AMP PEAK  3(5P15.33) MUTATED        5
  AMP PEAK  3(5P15.33) WILD-TYPE      0
D3V1, multiclass
        clus
vv       AMP PEAK  3(5P15.33) MUTATED AMP PEAK  3(5P15.33) WILD-TYPE
  CLUS_1                            5                             14
  CLUS_2                           18                              0
  CLUS_3                           11                              2
  CLUS_4                           14                              4
  CLUS_5                            7                              4
  CLUS_6                            5                              1
  CLUS_7                            5                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(5P15.33) MUTATED       10      7      6     14      8     11
  AMP PEAK  3(5P15.33) WILD-TYPE      6      7      2      3      1      1
                                vv
clus                             CLUS_7
  AMP PEAK  3(5P15.33) MUTATED        2
  AMP PEAK  3(5P15.33) WILD-TYPE      0
D3V2, multiclass
        clus
vv       AMP PEAK  3(5P15.33) MUTATED AMP PEAK  3(5P15.33) WILD-TYPE
  CLUS_1                           10                              6
  CLUS_2                            7                              7
  CLUS_3                            6                              2
  CLUS_4                           14                              3
  CLUS_5                            8                              1
  CLUS_6                           11                              1
  CLUS_7                            2                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5P15.33) MUTATED        8      8      9     10
  AMP PEAK  3(5P15.33) WILD-TYPE      2      3      1      4
D3V3, multiclass
        clus
vv       AMP PEAK  3(5P15.33) MUTATED AMP PEAK  3(5P15.33) WILD-TYPE
  CLUS_1                            8                              2
  CLUS_2                            8                              3
  CLUS_3                            9                              1
  CLUS_4                           10                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(5P15.33) MUTATED        5      6      6      2      3      4
  AMP PEAK  3(5P15.33) WILD-TYPE      3      1      1      1      1      0
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK  3(5P15.33) MUTATED        5      4
  AMP PEAK  3(5P15.33) WILD-TYPE      1      2
D3V4, multiclass
        clus
vv       AMP PEAK  3(5P15.33) MUTATED AMP PEAK  3(5P15.33) WILD-TYPE
  CLUS_1                            5                              3
  CLUS_2                            6                              1
  CLUS_3                            6                              1
  CLUS_4                            2                              1
  CLUS_5                            3                              1
  CLUS_6                            4                              0
  CLUS_7                            5                              1
  CLUS_8                            4                              2
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5P15.33) MUTATED       12     11     15     19
  AMP PEAK  3(5P15.33) WILD-TYPE     12      3      1      4
D3V5, multiclass
        clus
vv       AMP PEAK  3(5P15.33) MUTATED AMP PEAK  3(5P15.33) WILD-TYPE
  CLUS_1                           12                             12
  CLUS_2                           11                              3
  CLUS_3                           15                              1
  CLUS_4                           19                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5P15.33) MUTATED       13     20      2     22
  AMP PEAK  3(5P15.33) WILD-TYPE     10      3      5      2
D3V6, multiclass
        clus
vv       AMP PEAK  3(5P15.33) MUTATED AMP PEAK  3(5P15.33) WILD-TYPE
  CLUS_1                           13                             10
  CLUS_2                           20                              3
  CLUS_3                            2                              5
  CLUS_4                           22                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5P15.33) MUTATED       23     14     21
  AMP PEAK  3(5P15.33) WILD-TYPE      6     10      4
D3V7, multiclass
        clus
vv       AMP PEAK  3(5P15.33) MUTATED AMP PEAK  3(5P15.33) WILD-TYPE
  CLUS_1                           23                              6
  CLUS_2                           14                             10
  CLUS_3                           21                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(5P15.33) MUTATED       15     19      9     12      3
  AMP PEAK  3(5P15.33) WILD-TYPE      1      8      2      8      1
D3V8, multiclass
        clus
vv       AMP PEAK  3(5P15.33) MUTATED AMP PEAK  3(5P15.33) WILD-TYPE
  CLUS_1                           15                              1
  CLUS_2                           19                              8
  CLUS_3                            9                              2
  CLUS_4                           12                              8
  CLUS_5                            3                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5P15.33) MUTATED        9     11     16     21
  AMP PEAK  3(5P15.33) WILD-TYPE      7      8      0      5
D3V9, multiclass
        clus
vv       AMP PEAK  3(5P15.33) MUTATED AMP PEAK  3(5P15.33) WILD-TYPE
  CLUS_1                            9                              7
  CLUS_2                           11                              8
  CLUS_3                           16                              0
  CLUS_4                           21                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(5P15.33) MUTATED        6     19     11      8      6      7
  AMP PEAK  3(5P15.33) WILD-TYPE      0      5      0      6      5      4
D3V10, multiclass
        clus
vv       AMP PEAK  3(5P15.33) MUTATED AMP PEAK  3(5P15.33) WILD-TYPE
  CLUS_1                            6                              0
  CLUS_2                           19                              5
  CLUS_3                           11                              0
  CLUS_4                            8                              6
  CLUS_5                            6                              5
  CLUS_6                            7                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(5Q35.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(5Q35.3) MUTATED        6     18     13      9      7      5
  AMP PEAK  4(5Q35.3) WILD-TYPE     13      0      0      9      4      1
                               vv
clus                            CLUS_7
  AMP PEAK  4(5Q35.3) MUTATED        5
  AMP PEAK  4(5Q35.3) WILD-TYPE      0
D4V1, multiclass
        clus
vv       AMP PEAK  4(5Q35.3) MUTATED AMP PEAK  4(5Q35.3) WILD-TYPE
  CLUS_1                           6                            13
  CLUS_2                          18                             0
  CLUS_3                          13                             0
  CLUS_4                           9                             9
  CLUS_5                           7                             4
  CLUS_6                           5                             1
  CLUS_7                           5                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(5Q35.3) MUTATED        5      7      6     16      8     12
  AMP PEAK  4(5Q35.3) WILD-TYPE     11      7      2      1      1      0
                               vv
clus                            CLUS_7
  AMP PEAK  4(5Q35.3) MUTATED        2
  AMP PEAK  4(5Q35.3) WILD-TYPE      0
D4V2, multiclass
        clus
vv       AMP PEAK  4(5Q35.3) MUTATED AMP PEAK  4(5Q35.3) WILD-TYPE
  CLUS_1                           5                            11
  CLUS_2                           7                             7
  CLUS_3                           6                             2
  CLUS_4                          16                             1
  CLUS_5                           8                             1
  CLUS_6                          12                             0
  CLUS_7                           2                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5Q35.3) MUTATED        6      7     10     11
  AMP PEAK  4(5Q35.3) WILD-TYPE      4      4      0      3
D4V3, multiclass
        clus
vv       AMP PEAK  4(5Q35.3) MUTATED AMP PEAK  4(5Q35.3) WILD-TYPE
  CLUS_1                           6                             4
  CLUS_2                           7                             4
  CLUS_3                          10                             0
  CLUS_4                          11                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(5Q35.3) MUTATED        4      7      7      1      2      4
  AMP PEAK  4(5Q35.3) WILD-TYPE      4      0      0      2      2      0
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  4(5Q35.3) MUTATED        6      3
  AMP PEAK  4(5Q35.3) WILD-TYPE      0      3
D4V4, multiclass
        clus
vv       AMP PEAK  4(5Q35.3) MUTATED AMP PEAK  4(5Q35.3) WILD-TYPE
  CLUS_1                           4                             4
  CLUS_2                           7                             0
  CLUS_3                           7                             0
  CLUS_4                           1                             2
  CLUS_5                           2                             2
  CLUS_6                           4                             0
  CLUS_7                           6                             0
  CLUS_8                           3                             3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5Q35.3) MUTATED        7     13     15     20
  AMP PEAK  4(5Q35.3) WILD-TYPE     17      1      1      3
D4V5, multiclass
        clus
vv       AMP PEAK  4(5Q35.3) MUTATED AMP PEAK  4(5Q35.3) WILD-TYPE
  CLUS_1                           7                            17
  CLUS_2                          13                             1
  CLUS_3                          15                             1
  CLUS_4                          20                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5Q35.3) MUTATED        8     22      2     23
  AMP PEAK  4(5Q35.3) WILD-TYPE     15      1      5      1
D4V6, multiclass
        clus
vv       AMP PEAK  4(5Q35.3) MUTATED AMP PEAK  4(5Q35.3) WILD-TYPE
  CLUS_1                           8                            15
  CLUS_2                          22                             1
  CLUS_3                           2                             5
  CLUS_4                          23                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5Q35.3) MUTATED       19     14     23
  AMP PEAK  4(5Q35.3) WILD-TYPE     10     10      2
D4V7, multiclass
        clus
vv       AMP PEAK  4(5Q35.3) MUTATED AMP PEAK  4(5Q35.3) WILD-TYPE
  CLUS_1                          19                            10
  CLUS_2                          14                            10
  CLUS_3                          23                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(5Q35.3) MUTATED       14     21      9      9      3
  AMP PEAK  4(5Q35.3) WILD-TYPE      2      6      2     11      1
D4V8, multiclass
        clus
vv       AMP PEAK  4(5Q35.3) MUTATED AMP PEAK  4(5Q35.3) WILD-TYPE
  CLUS_1                          14                             2
  CLUS_2                          21                             6
  CLUS_3                           9                             2
  CLUS_4                           9                            11
  CLUS_5                           3                             1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5Q35.3) MUTATED        4     14     15     22
  AMP PEAK  4(5Q35.3) WILD-TYPE     12      5      1      4
D4V9, multiclass
        clus
vv       AMP PEAK  4(5Q35.3) MUTATED AMP PEAK  4(5Q35.3) WILD-TYPE
  CLUS_1                           4                            12
  CLUS_2                          14                             5
  CLUS_3                          15                             1
  CLUS_4                          22                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(5Q35.3) MUTATED        5     20     10      6      6      8
  AMP PEAK  4(5Q35.3) WILD-TYPE      1      4      1      8      5      3
D4V10, multiclass
        clus
vv       AMP PEAK  4(5Q35.3) MUTATED AMP PEAK  4(5Q35.3) WILD-TYPE
  CLUS_1                           5                             1
  CLUS_2                          20                             4
  CLUS_3                          10                             1
  CLUS_4                           6                             8
  CLUS_5                           6                             5
  CLUS_6                           8                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(6P21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(6P21.31) MUTATED        2      2      2      3      7      1
  AMP PEAK  5(6P21.31) WILD-TYPE     17     16     11     15      4      5
                                vv
clus                             CLUS_7
  AMP PEAK  5(6P21.31) MUTATED        2
  AMP PEAK  5(6P21.31) WILD-TYPE      3
D5V1, multiclass
        clus
vv       AMP PEAK  5(6P21.31) MUTATED AMP PEAK  5(6P21.31) WILD-TYPE
  CLUS_1                            2                             17
  CLUS_2                            2                             16
  CLUS_3                            2                             11
  CLUS_4                            3                             15
  CLUS_5                            7                              4
  CLUS_6                            1                              5
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(6P21.31) MUTATED        5      2      1      2      2      1
  AMP PEAK  5(6P21.31) WILD-TYPE     11     12      7     15      7     11
                                vv
clus                             CLUS_7
  AMP PEAK  5(6P21.31) MUTATED        1
  AMP PEAK  5(6P21.31) WILD-TYPE      1
D5V2, multiclass
        clus
vv       AMP PEAK  5(6P21.31) MUTATED AMP PEAK  5(6P21.31) WILD-TYPE
  CLUS_1                            5                             11
  CLUS_2                            2                             12
  CLUS_3                            1                              7
  CLUS_4                            2                             15
  CLUS_5                            2                              7
  CLUS_6                            1                             11
  CLUS_7                            1                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(6P21.31) MUTATED        1      1      2      4
  AMP PEAK  5(6P21.31) WILD-TYPE      9     10      8     10
D5V3, multiclass
        clus
vv       AMP PEAK  5(6P21.31) MUTATED AMP PEAK  5(6P21.31) WILD-TYPE
  CLUS_1                            1                              9
  CLUS_2                            1                             10
  CLUS_3                            2                              8
  CLUS_4                            4                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(6P21.31) MUTATED        1      2      2      1      0      1
  AMP PEAK  5(6P21.31) WILD-TYPE      7      5      5      2      4      3
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK  5(6P21.31) MUTATED        1      0
  AMP PEAK  5(6P21.31) WILD-TYPE      5      6
D5V4, multiclass
        clus
vv       AMP PEAK  5(6P21.31) MUTATED AMP PEAK  5(6P21.31) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            2                              5
  CLUS_3                            2                              5
  CLUS_4                            1                              2
  CLUS_5                            0                              4
  CLUS_6                            1                              3
  CLUS_7                            1                              5
  CLUS_8                            0                              6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(6P21.31) MUTATED        4      0      6      3
  AMP PEAK  5(6P21.31) WILD-TYPE     20     14     10     20
D5V5, multiclass
        clus
vv       AMP PEAK  5(6P21.31) MUTATED AMP PEAK  5(6P21.31) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            0                             14
  CLUS_3                            6                             10
  CLUS_4                            3                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(6P21.31) MUTATED        4      4      1      4
  AMP PEAK  5(6P21.31) WILD-TYPE     19     19      6     20
D5V6, multiclass
        clus
vv       AMP PEAK  5(6P21.31) MUTATED AMP PEAK  5(6P21.31) WILD-TYPE
  CLUS_1                            4                             19
  CLUS_2                            4                             19
  CLUS_3                            1                              6
  CLUS_4                            4                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P21.31) MUTATED        9      2      3
  AMP PEAK  5(6P21.31) WILD-TYPE     20     22     22
D5V7, multiclass
        clus
vv       AMP PEAK  5(6P21.31) MUTATED AMP PEAK  5(6P21.31) WILD-TYPE
  CLUS_1                            9                             20
  CLUS_2                            2                             22
  CLUS_3                            3                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(6P21.31) MUTATED        5      2      5      2      0
  AMP PEAK  5(6P21.31) WILD-TYPE     11     25      6     18      4
D5V8, multiclass
        clus
vv       AMP PEAK  5(6P21.31) MUTATED AMP PEAK  5(6P21.31) WILD-TYPE
  CLUS_1                            5                             11
  CLUS_2                            2                             25
  CLUS_3                            5                              6
  CLUS_4                            2                             18
  CLUS_5                            0                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(6P21.31) MUTATED        3      0      7      3
  AMP PEAK  5(6P21.31) WILD-TYPE     13     19      9     23
D5V9, multiclass
        clus
vv       AMP PEAK  5(6P21.31) MUTATED AMP PEAK  5(6P21.31) WILD-TYPE
  CLUS_1                            3                             13
  CLUS_2                            0                             19
  CLUS_3                            7                              9
  CLUS_4                            3                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(6P21.31) MUTATED        2      2      5      2      0      2
  AMP PEAK  5(6P21.31) WILD-TYPE      4     22      6     12     11      9
D5V10, multiclass
        clus
vv       AMP PEAK  5(6P21.31) MUTATED AMP PEAK  5(6P21.31) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            2                             22
  CLUS_3                            5                              6
  CLUS_4                            2                             12
  CLUS_5                            0                             11
  CLUS_6                            2                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(6Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(6Q24.3) MUTATED        4      1      2      2      7      1
  AMP PEAK  6(6Q24.3) WILD-TYPE     15     17     11     16      4      5
                               vv
clus                            CLUS_7
  AMP PEAK  6(6Q24.3) MUTATED        2
  AMP PEAK  6(6Q24.3) WILD-TYPE      3
D6V1, multiclass
        clus
vv       AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE
  CLUS_1                           4                            15
  CLUS_2                           1                            17
  CLUS_3                           2                            11
  CLUS_4                           2                            16
  CLUS_5                           7                             4
  CLUS_6                           1                             5
  CLUS_7                           2                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(6Q24.3) MUTATED        4      3      1      4      2      1
  AMP PEAK  6(6Q24.3) WILD-TYPE     12     11      7     13      7     11
                               vv
clus                            CLUS_7
  AMP PEAK  6(6Q24.3) MUTATED        1
  AMP PEAK  6(6Q24.3) WILD-TYPE      1
D6V2, multiclass
        clus
vv       AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE
  CLUS_1                           4                            12
  CLUS_2                           3                            11
  CLUS_3                           1                             7
  CLUS_4                           4                            13
  CLUS_5                           2                             7
  CLUS_6                           1                            11
  CLUS_7                           1                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(6Q24.3) MUTATED        2      2      3      4
  AMP PEAK  6(6Q24.3) WILD-TYPE      8      9      7     10
D6V3, multiclass
        clus
vv       AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE
  CLUS_1                           2                             8
  CLUS_2                           2                             9
  CLUS_3                           3                             7
  CLUS_4                           4                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(6Q24.3) MUTATED        2      3      3      0      1      1
  AMP PEAK  6(6Q24.3) WILD-TYPE      6      4      4      3      3      3
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  6(6Q24.3) MUTATED        1      0
  AMP PEAK  6(6Q24.3) WILD-TYPE      5      6
D6V4, multiclass
        clus
vv       AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           3                             4
  CLUS_3                           3                             4
  CLUS_4                           0                             3
  CLUS_5                           1                             3
  CLUS_6                           1                             3
  CLUS_7                           1                             5
  CLUS_8                           0                             6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(6Q24.3) MUTATED        5      0      7      4
  AMP PEAK  6(6Q24.3) WILD-TYPE     19     14      9     19
D6V5, multiclass
        clus
vv       AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE
  CLUS_1                           5                            19
  CLUS_2                           0                            14
  CLUS_3                           7                             9
  CLUS_4                           4                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(6Q24.3) MUTATED        4      5      2      5
  AMP PEAK  6(6Q24.3) WILD-TYPE     19     18      5     19
D6V6, multiclass
        clus
vv       AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE
  CLUS_1                           4                            19
  CLUS_2                           5                            18
  CLUS_3                           2                             5
  CLUS_4                           5                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(6Q24.3) MUTATED        9      3      4
  AMP PEAK  6(6Q24.3) WILD-TYPE     20     21     21
D6V7, multiclass
        clus
vv       AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE
  CLUS_1                           9                            20
  CLUS_2                           3                            21
  CLUS_3                           4                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(6Q24.3) MUTATED        4      4      5      3      0
  AMP PEAK  6(6Q24.3) WILD-TYPE     12     23      6     17      4
D6V8, multiclass
        clus
vv       AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE
  CLUS_1                           4                            12
  CLUS_2                           4                            23
  CLUS_3                           5                             6
  CLUS_4                           3                            17
  CLUS_5                           0                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(6Q24.3) MUTATED        4      1      6      4
  AMP PEAK  6(6Q24.3) WILD-TYPE     12     18     10     22
D6V9, multiclass
        clus
vv       AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE
  CLUS_1                           4                            12
  CLUS_2                           1                            18
  CLUS_3                           6                            10
  CLUS_4                           4                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(6Q24.3) MUTATED        1      4      5      2      1      2
  AMP PEAK  6(6Q24.3) WILD-TYPE      5     20      6     12     10      9
D6V10, multiclass
        clus
vv       AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           4                            20
  CLUS_3                           5                             6
  CLUS_4                           2                            12
  CLUS_5                           1                            10
  CLUS_6                           2                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(7P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(7P22.1) MUTATED        6     12     12     12      4      3
  AMP PEAK  7(7P22.1) WILD-TYPE     13      6      1      6      7      3
                               vv
clus                            CLUS_7
  AMP PEAK  7(7P22.1) MUTATED        5
  AMP PEAK  7(7P22.1) WILD-TYPE      0
D7V1, multiclass
        clus
vv       AMP PEAK  7(7P22.1) MUTATED AMP PEAK  7(7P22.1) WILD-TYPE
  CLUS_1                           6                            13
  CLUS_2                          12                             6
  CLUS_3                          12                             1
  CLUS_4                          12                             6
  CLUS_5                           4                             7
  CLUS_6                           3                             3
  CLUS_7                           5                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(7P22.1) MUTATED        7      7      6     11      8      6
  AMP PEAK  7(7P22.1) WILD-TYPE      9      7      2      6      1      6
                               vv
clus                            CLUS_7
  AMP PEAK  7(7P22.1) MUTATED        2
  AMP PEAK  7(7P22.1) WILD-TYPE      0
D7V2, multiclass
        clus
vv       AMP PEAK  7(7P22.1) MUTATED AMP PEAK  7(7P22.1) WILD-TYPE
  CLUS_1                           7                             9
  CLUS_2                           7                             7
  CLUS_3                           6                             2
  CLUS_4                          11                             6
  CLUS_5                           8                             1
  CLUS_6                           6                             6
  CLUS_7                           2                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7P22.1) MUTATED        8      6      9     10
  AMP PEAK  7(7P22.1) WILD-TYPE      2      5      1      4
D7V3, multiclass
        clus
vv       AMP PEAK  7(7P22.1) MUTATED AMP PEAK  7(7P22.1) WILD-TYPE
  CLUS_1                           8                             2
  CLUS_2                           6                             5
  CLUS_3                           9                             1
  CLUS_4                          10                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(7P22.1) MUTATED        6      7      5      2      3      3
  AMP PEAK  7(7P22.1) WILD-TYPE      2      0      2      1      1      1
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  7(7P22.1) MUTATED        4      3
  AMP PEAK  7(7P22.1) WILD-TYPE      2      3
D7V4, multiclass
        clus
vv       AMP PEAK  7(7P22.1) MUTATED AMP PEAK  7(7P22.1) WILD-TYPE
  CLUS_1                           6                             2
  CLUS_2                           7                             0
  CLUS_3                           5                             2
  CLUS_4                           2                             1
  CLUS_5                           3                             1
  CLUS_6                           3                             1
  CLUS_7                           4                             2
  CLUS_8                           3                             3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7P22.1) MUTATED       10     13     12     12
  AMP PEAK  7(7P22.1) WILD-TYPE     14      1      4     11
D7V5, multiclass
        clus
vv       AMP PEAK  7(7P22.1) MUTATED AMP PEAK  7(7P22.1) WILD-TYPE
  CLUS_1                          10                            14
  CLUS_2                          13                             1
  CLUS_3                          12                             4
  CLUS_4                          12                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7P22.1) MUTATED       12     19      2     14
  AMP PEAK  7(7P22.1) WILD-TYPE     11      4      5     10
D7V6, multiclass
        clus
vv       AMP PEAK  7(7P22.1) MUTATED AMP PEAK  7(7P22.1) WILD-TYPE
  CLUS_1                          12                            11
  CLUS_2                          19                             4
  CLUS_3                           2                             5
  CLUS_4                          14                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7P22.1) MUTATED       20     14     13
  AMP PEAK  7(7P22.1) WILD-TYPE      9     10     12
D7V7, multiclass
        clus
vv       AMP PEAK  7(7P22.1) MUTATED AMP PEAK  7(7P22.1) WILD-TYPE
  CLUS_1                          20                             9
  CLUS_2                          14                            10
  CLUS_3                          13                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(7P22.1) MUTATED       11     15      6     11      4
  AMP PEAK  7(7P22.1) WILD-TYPE      5     12      5      9      0
D7V8, multiclass
        clus
vv       AMP PEAK  7(7P22.1) MUTATED AMP PEAK  7(7P22.1) WILD-TYPE
  CLUS_1                          11                             5
  CLUS_2                          15                            12
  CLUS_3                           6                             5
  CLUS_4                          11                             9
  CLUS_5                           4                             0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7P22.1) MUTATED        7     13     13     13
  AMP PEAK  7(7P22.1) WILD-TYPE      9      6      3     13
D7V9, multiclass
        clus
vv       AMP PEAK  7(7P22.1) MUTATED AMP PEAK  7(7P22.1) WILD-TYPE
  CLUS_1                           7                             9
  CLUS_2                          13                             6
  CLUS_3                          13                             3
  CLUS_4                          13                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(7P22.1) MUTATED        4     15      9      7      7      4
  AMP PEAK  7(7P22.1) WILD-TYPE      2      9      2      7      4      7
D7V10, multiclass
        clus
vv       AMP PEAK  7(7P22.1) MUTATED AMP PEAK  7(7P22.1) WILD-TYPE
  CLUS_1                           4                             2
  CLUS_2                          15                             9
  CLUS_3                           9                             2
  CLUS_4                           7                             7
  CLUS_5                           7                             4
  CLUS_6                           4                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(9Q31.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(9Q31.3) MUTATED        4      1     11      9      5      3
  AMP PEAK  8(9Q31.3) WILD-TYPE     15     17      2      9      6      3
                               vv
clus                            CLUS_7
  AMP PEAK  8(9Q31.3) MUTATED        1
  AMP PEAK  8(9Q31.3) WILD-TYPE      4
D8V1, multiclass
        clus
vv       AMP PEAK  8(9Q31.3) MUTATED AMP PEAK  8(9Q31.3) WILD-TYPE
  CLUS_1                           4                            15
  CLUS_2                           1                            17
  CLUS_3                          11                             2
  CLUS_4                           9                             9
  CLUS_5                           5                             6
  CLUS_6                           3                             3
  CLUS_7                           1                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(9Q31.3) MUTATED        7      2      3      9      2      1
  AMP PEAK  8(9Q31.3) WILD-TYPE      9     12      5      8      7     11
                               vv
clus                            CLUS_7
  AMP PEAK  8(9Q31.3) MUTATED        2
  AMP PEAK  8(9Q31.3) WILD-TYPE      0
D8V2, multiclass
        clus
vv       AMP PEAK  8(9Q31.3) MUTATED AMP PEAK  8(9Q31.3) WILD-TYPE
  CLUS_1                           7                             9
  CLUS_2                           2                            12
  CLUS_3                           3                             5
  CLUS_4                           9                             8
  CLUS_5                           2                             7
  CLUS_6                           1                            11
  CLUS_7                           2                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(9Q31.3) MUTATED        3      4      1      8
  AMP PEAK  8(9Q31.3) WILD-TYPE      7      7      9      6
D8V3, multiclass
        clus
vv       AMP PEAK  8(9Q31.3) MUTATED AMP PEAK  8(9Q31.3) WILD-TYPE
  CLUS_1                           3                             7
  CLUS_2                           4                             7
  CLUS_3                           1                             9
  CLUS_4                           8                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(9Q31.3) MUTATED        5      4      0      2      1      1
  AMP PEAK  8(9Q31.3) WILD-TYPE      3      3      7      1      3      3
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  8(9Q31.3) MUTATED        1      2
  AMP PEAK  8(9Q31.3) WILD-TYPE      5      4
D8V4, multiclass
        clus
vv       AMP PEAK  8(9Q31.3) MUTATED AMP PEAK  8(9Q31.3) WILD-TYPE
  CLUS_1                           5                             3
  CLUS_2                           4                             3
  CLUS_3                           0                             7
  CLUS_4                           2                             1
  CLUS_5                           1                             3
  CLUS_6                           1                             3
  CLUS_7                           1                             5
  CLUS_8                           2                             4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(9Q31.3) MUTATED        8      9      5      3
  AMP PEAK  8(9Q31.3) WILD-TYPE     16      5     11     20
D8V5, multiclass
        clus
vv       AMP PEAK  8(9Q31.3) MUTATED AMP PEAK  8(9Q31.3) WILD-TYPE
  CLUS_1                           8                            16
  CLUS_2                           9                             5
  CLUS_3                           5                            11
  CLUS_4                           3                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(9Q31.3) MUTATED        9     12      1      3
  AMP PEAK  8(9Q31.3) WILD-TYPE     14     11      6     21
D8V6, multiclass
        clus
vv       AMP PEAK  8(9Q31.3) MUTATED AMP PEAK  8(9Q31.3) WILD-TYPE
  CLUS_1                           9                            14
  CLUS_2                          12                            11
  CLUS_3                           1                             6
  CLUS_4                           3                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(9Q31.3) MUTATED       10     13      3
  AMP PEAK  8(9Q31.3) WILD-TYPE     19     11     22
D8V7, multiclass
        clus
vv       AMP PEAK  8(9Q31.3) MUTATED AMP PEAK  8(9Q31.3) WILD-TYPE
  CLUS_1                          10                            19
  CLUS_2                          13                            11
  CLUS_3                           3                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(9Q31.3) MUTATED        5      7      2      9      3
  AMP PEAK  8(9Q31.3) WILD-TYPE     11     20      9     11      1
D8V8, multiclass
        clus
vv       AMP PEAK  8(9Q31.3) MUTATED AMP PEAK  8(9Q31.3) WILD-TYPE
  CLUS_1                           5                            11
  CLUS_2                           7                            20
  CLUS_3                           2                             9
  CLUS_4                           9                            11
  CLUS_5                           3                             1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(9Q31.3) MUTATED        7     10      6      3
  AMP PEAK  8(9Q31.3) WILD-TYPE      9      9     10     23
D8V9, multiclass
        clus
vv       AMP PEAK  8(9Q31.3) MUTATED AMP PEAK  8(9Q31.3) WILD-TYPE
  CLUS_1                           7                             9
  CLUS_2                          10                             9
  CLUS_3                           6                            10
  CLUS_4                           3                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(9Q31.3) MUTATED        4      7      3      6      5      1
  AMP PEAK  8(9Q31.3) WILD-TYPE      2     17      8      8      6     10
D8V10, multiclass
        clus
vv       AMP PEAK  8(9Q31.3) MUTATED AMP PEAK  8(9Q31.3) WILD-TYPE
  CLUS_1                           4                             2
  CLUS_2                           7                            17
  CLUS_3                           3                             8
  CLUS_4                           6                             8
  CLUS_5                           5                             6
  CLUS_6                           1                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(12Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(12Q14.1) MUTATED        4     18     12     17      9      5
  AMP PEAK  9(12Q14.1) WILD-TYPE     15      0      1      1      2      1
                                vv
clus                             CLUS_7
  AMP PEAK  9(12Q14.1) MUTATED        5
  AMP PEAK  9(12Q14.1) WILD-TYPE      0
D9V1, multiclass
        clus
vv       AMP PEAK  9(12Q14.1) MUTATED AMP PEAK  9(12Q14.1) WILD-TYPE
  CLUS_1                            4                             15
  CLUS_2                           18                              0
  CLUS_3                           12                              1
  CLUS_4                           17                              1
  CLUS_5                            9                              2
  CLUS_6                            5                              1
  CLUS_7                            5                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(12Q14.1) MUTATED       12      9      4     15      8     12
  AMP PEAK  9(12Q14.1) WILD-TYPE      4      5      4      2      1      0
                                vv
clus                             CLUS_7
  AMP PEAK  9(12Q14.1) MUTATED        1
  AMP PEAK  9(12Q14.1) WILD-TYPE      1
D9V2, multiclass
        clus
vv       AMP PEAK  9(12Q14.1) MUTATED AMP PEAK  9(12Q14.1) WILD-TYPE
  CLUS_1                           12                              4
  CLUS_2                            9                              5
  CLUS_3                            4                              4
  CLUS_4                           15                              2
  CLUS_5                            8                              1
  CLUS_6                           12                              0
  CLUS_7                            1                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(12Q14.1) MUTATED        9      6     10     11
  AMP PEAK  9(12Q14.1) WILD-TYPE      1      5      0      3
D9V3, multiclass
        clus
vv       AMP PEAK  9(12Q14.1) MUTATED AMP PEAK  9(12Q14.1) WILD-TYPE
  CLUS_1                            9                              1
  CLUS_2                            6                              5
  CLUS_3                           10                              0
  CLUS_4                           11                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(12Q14.1) MUTATED        7      6      7      3      3      4
  AMP PEAK  9(12Q14.1) WILD-TYPE      1      1      0      0      1      0
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK  9(12Q14.1) MUTATED        5      1
  AMP PEAK  9(12Q14.1) WILD-TYPE      1      5
D9V4, multiclass
        clus
vv       AMP PEAK  9(12Q14.1) MUTATED AMP PEAK  9(12Q14.1) WILD-TYPE
  CLUS_1                            7                              1
  CLUS_2                            6                              1
  CLUS_3                            7                              0
  CLUS_4                            3                              0
  CLUS_5                            3                              1
  CLUS_6                            4                              0
  CLUS_7                            5                              1
  CLUS_8                            1                              5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(12Q14.1) MUTATED       14     14     13     19
  AMP PEAK  9(12Q14.1) WILD-TYPE     10      0      3      4
D9V5, multiclass
        clus
vv       AMP PEAK  9(12Q14.1) MUTATED AMP PEAK  9(12Q14.1) WILD-TYPE
  CLUS_1                           14                             10
  CLUS_2                           14                              0
  CLUS_3                           13                              3
  CLUS_4                           19                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(12Q14.1) MUTATED       14     20      3     23
  AMP PEAK  9(12Q14.1) WILD-TYPE      9      3      4      1
D9V6, multiclass
        clus
vv       AMP PEAK  9(12Q14.1) MUTATED AMP PEAK  9(12Q14.1) WILD-TYPE
  CLUS_1                           14                              9
  CLUS_2                           20                              3
  CLUS_3                            3                              4
  CLUS_4                           23                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(12Q14.1) MUTATED       22     17     22
  AMP PEAK  9(12Q14.1) WILD-TYPE      7      7      3
D9V7, multiclass
        clus
vv       AMP PEAK  9(12Q14.1) MUTATED AMP PEAK  9(12Q14.1) WILD-TYPE
  CLUS_1                           22                              7
  CLUS_2                           17                              7
  CLUS_3                           22                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(12Q14.1) MUTATED       14     22      8     15      2
  AMP PEAK  9(12Q14.1) WILD-TYPE      2      5      3      5      2
D9V8, multiclass
        clus
vv       AMP PEAK  9(12Q14.1) MUTATED AMP PEAK  9(12Q14.1) WILD-TYPE
  CLUS_1                           14                              2
  CLUS_2                           22                              5
  CLUS_3                            8                              3
  CLUS_4                           15                              5
  CLUS_5                            2                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(12Q14.1) MUTATED       11     12     15     22
  AMP PEAK  9(12Q14.1) WILD-TYPE      5      7      1      4
D9V9, multiclass
        clus
vv       AMP PEAK  9(12Q14.1) MUTATED AMP PEAK  9(12Q14.1) WILD-TYPE
  CLUS_1                           11                              5
  CLUS_2                           12                              7
  CLUS_3                           15                              1
  CLUS_4                           22                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(12Q14.1) MUTATED        5     22      9     10      6      8
  AMP PEAK  9(12Q14.1) WILD-TYPE      1      2      2      4      5      3
D9V10, multiclass
        clus
vv       AMP PEAK  9(12Q14.1) MUTATED AMP PEAK  9(12Q14.1) WILD-TYPE
  CLUS_1                            5                              1
  CLUS_2                           22                              2
  CLUS_3                            9                              2
  CLUS_4                           10                              4
  CLUS_5                            6                              5
  CLUS_6                            8                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(14Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(14Q11.2) MUTATED        1      3      9      6      6      0
  AMP PEAK 10(14Q11.2) WILD-TYPE     18     15      4     12      5      6
                                vv
clus                             CLUS_7
  AMP PEAK 10(14Q11.2) MUTATED        2
  AMP PEAK 10(14Q11.2) WILD-TYPE      3
D10V1, multiclass
        clus
vv       AMP PEAK 10(14Q11.2) MUTATED AMP PEAK 10(14Q11.2) WILD-TYPE
  CLUS_1                            1                             18
  CLUS_2                            3                             15
  CLUS_3                            9                              4
  CLUS_4                            6                             12
  CLUS_5                            6                              5
  CLUS_6                            0                              6
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(14Q11.2) MUTATED        5      0      4     11      2      1
  AMP PEAK 10(14Q11.2) WILD-TYPE     11     14      4      6      7     11
                                vv
clus                             CLUS_7
  AMP PEAK 10(14Q11.2) MUTATED        1
  AMP PEAK 10(14Q11.2) WILD-TYPE      1
D10V2, multiclass
        clus
vv       AMP PEAK 10(14Q11.2) MUTATED AMP PEAK 10(14Q11.2) WILD-TYPE
  CLUS_1                            5                             11
  CLUS_2                            0                             14
  CLUS_3                            4                              4
  CLUS_4                           11                              6
  CLUS_5                            2                              7
  CLUS_6                            1                             11
  CLUS_7                            1                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(14Q11.2) MUTATED        2      6      0      5
  AMP PEAK 10(14Q11.2) WILD-TYPE      8      5     10      9
D10V3, multiclass
        clus
vv       AMP PEAK 10(14Q11.2) MUTATED AMP PEAK 10(14Q11.2) WILD-TYPE
  CLUS_1                            2                              8
  CLUS_2                            6                              5
  CLUS_3                            0                             10
  CLUS_4                            5                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(14Q11.2) MUTATED        3      5      0      2      0      0
  AMP PEAK 10(14Q11.2) WILD-TYPE      5      2      7      1      4      4
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 10(14Q11.2) MUTATED        1      2
  AMP PEAK 10(14Q11.2) WILD-TYPE      5      4
D10V4, multiclass
        clus
vv       AMP PEAK 10(14Q11.2) MUTATED AMP PEAK 10(14Q11.2) WILD-TYPE
  CLUS_1                            3                              5
  CLUS_2                            5                              2
  CLUS_3                            0                              7
  CLUS_4                            2                              1
  CLUS_5                            0                              4
  CLUS_6                            0                              4
  CLUS_7                            1                              5
  CLUS_8                            2                              4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(14Q11.2) MUTATED        4      8     10      1
  AMP PEAK 10(14Q11.2) WILD-TYPE     20      6      6     22
D10V5, multiclass
        clus
vv       AMP PEAK 10(14Q11.2) MUTATED AMP PEAK 10(14Q11.2) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            8                              6
  CLUS_3                           10                              6
  CLUS_4                            1                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(14Q11.2) MUTATED        5     16      0      2
  AMP PEAK 10(14Q11.2) WILD-TYPE     18      7      7     22
D10V6, multiclass
        clus
vv       AMP PEAK 10(14Q11.2) MUTATED AMP PEAK 10(14Q11.2) WILD-TYPE
  CLUS_1                            5                             18
  CLUS_2                           16                              7
  CLUS_3                            0                              7
  CLUS_4                            2                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(14Q11.2) MUTATED       15      8      1
  AMP PEAK 10(14Q11.2) WILD-TYPE     14     16     24
D10V7, multiclass
        clus
vv       AMP PEAK 10(14Q11.2) MUTATED AMP PEAK 10(14Q11.2) WILD-TYPE
  CLUS_1                           15                             14
  CLUS_2                            8                             16
  CLUS_3                            1                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(14Q11.2) MUTATED        9      3      3      6      3
  AMP PEAK 10(14Q11.2) WILD-TYPE      7     24      8     14      1
D10V8, multiclass
        clus
vv       AMP PEAK 10(14Q11.2) MUTATED AMP PEAK 10(14Q11.2) WILD-TYPE
  CLUS_1                            9                              7
  CLUS_2                            3                             24
  CLUS_3                            3                              8
  CLUS_4                            6                             14
  CLUS_5                            3                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(14Q11.2) MUTATED        5      6     11      1
  AMP PEAK 10(14Q11.2) WILD-TYPE     11     13      5     25
D10V9, multiclass
        clus
vv       AMP PEAK 10(14Q11.2) MUTATED AMP PEAK 10(14Q11.2) WILD-TYPE
  CLUS_1                            5                             11
  CLUS_2                            6                             13
  CLUS_3                           11                              5
  CLUS_4                            1                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(14Q11.2) MUTATED        4      3      7      4      4      1
  AMP PEAK 10(14Q11.2) WILD-TYPE      2     21      4     10      7     10
D10V10, multiclass
        clus
vv       AMP PEAK 10(14Q11.2) MUTATED AMP PEAK 10(14Q11.2) WILD-TYPE
  CLUS_1                            4                              2
  CLUS_2                            3                             21
  CLUS_3                            7                              4
  CLUS_4                            4                             10
  CLUS_5                            4                              7
  CLUS_6                            1                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(16P13.3) MUTATED        2     18     13      6      5      4
  AMP PEAK 11(16P13.3) WILD-TYPE     17      0      0     12      6      2
                                vv
clus                             CLUS_7
  AMP PEAK 11(16P13.3) MUTATED        2
  AMP PEAK 11(16P13.3) WILD-TYPE      3
D11V1, multiclass
        clus
vv       AMP PEAK 11(16P13.3) MUTATED AMP PEAK 11(16P13.3) WILD-TYPE
  CLUS_1                            2                             17
  CLUS_2                           18                              0
  CLUS_3                           13                              0
  CLUS_4                            6                             12
  CLUS_5                            5                              6
  CLUS_6                            4                              2
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(16P13.3) MUTATED        5      4      5     12      6     12
  AMP PEAK 11(16P13.3) WILD-TYPE     11     10      3      5      3      0
                                vv
clus                             CLUS_7
  AMP PEAK 11(16P13.3) MUTATED        1
  AMP PEAK 11(16P13.3) WILD-TYPE      1
D11V2, multiclass
        clus
vv       AMP PEAK 11(16P13.3) MUTATED AMP PEAK 11(16P13.3) WILD-TYPE
  CLUS_1                            5                             11
  CLUS_2                            4                             10
  CLUS_3                            5                              3
  CLUS_4                           12                              5
  CLUS_5                            6                              3
  CLUS_6                           12                              0
  CLUS_7                            1                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(16P13.3) MUTATED        4      6      6      9
  AMP PEAK 11(16P13.3) WILD-TYPE      6      5      4      5
D11V3, multiclass
        clus
vv       AMP PEAK 11(16P13.3) MUTATED AMP PEAK 11(16P13.3) WILD-TYPE
  CLUS_1                            4                              6
  CLUS_2                            6                              5
  CLUS_3                            6                              4
  CLUS_4                            9                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(16P13.3) MUTATED        4      7      4      0      1      3
  AMP PEAK 11(16P13.3) WILD-TYPE      4      0      3      3      3      1
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 11(16P13.3) MUTATED        4      2
  AMP PEAK 11(16P13.3) WILD-TYPE      2      4
D11V4, multiclass
        clus
vv       AMP PEAK 11(16P13.3) MUTATED AMP PEAK 11(16P13.3) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                            7                              0
  CLUS_3                            4                              3
  CLUS_4                            0                              3
  CLUS_5                            1                              3
  CLUS_6                            3                              1
  CLUS_7                            4                              2
  CLUS_8                            2                              4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(16P13.3) MUTATED        5     10     13     16
  AMP PEAK 11(16P13.3) WILD-TYPE     19      4      3      7
D11V5, multiclass
        clus
vv       AMP PEAK 11(16P13.3) MUTATED AMP PEAK 11(16P13.3) WILD-TYPE
  CLUS_1                            5                             19
  CLUS_2                           10                              4
  CLUS_3                           13                              3
  CLUS_4                           16                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(16P13.3) MUTATED        6     19      0     19
  AMP PEAK 11(16P13.3) WILD-TYPE     17      4      7      5
D11V6, multiclass
        clus
vv       AMP PEAK 11(16P13.3) MUTATED AMP PEAK 11(16P13.3) WILD-TYPE
  CLUS_1                            6                             17
  CLUS_2                           19                              4
  CLUS_3                            0                              7
  CLUS_4                           19                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(16P13.3) MUTATED       16     11     18
  AMP PEAK 11(16P13.3) WILD-TYPE     13     13      7
D11V7, multiclass
        clus
vv       AMP PEAK 11(16P13.3) MUTATED AMP PEAK 11(16P13.3) WILD-TYPE
  CLUS_1                           16                             13
  CLUS_2                           11                             13
  CLUS_3                           18                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(16P13.3) MUTATED       14     16      7      6      2
  AMP PEAK 11(16P13.3) WILD-TYPE      2     11      4     14      2
D11V8, multiclass
        clus
vv       AMP PEAK 11(16P13.3) MUTATED AMP PEAK 11(16P13.3) WILD-TYPE
  CLUS_1                           14                              2
  CLUS_2                           16                             11
  CLUS_3                            7                              4
  CLUS_4                            6                             14
  CLUS_5                            2                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(16P13.3) MUTATED        6      9     11     18
  AMP PEAK 11(16P13.3) WILD-TYPE     10     10      5      8
D11V9, multiclass
        clus
vv       AMP PEAK 11(16P13.3) MUTATED AMP PEAK 11(16P13.3) WILD-TYPE
  CLUS_1                            6                             10
  CLUS_2                            9                             10
  CLUS_3                           11                              5
  CLUS_4                           18                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(16P13.3) MUTATED        5     16      9      4      3      7
  AMP PEAK 11(16P13.3) WILD-TYPE      1      8      2     10      8      4
D11V10, multiclass
        clus
vv       AMP PEAK 11(16P13.3) MUTATED AMP PEAK 11(16P13.3) WILD-TYPE
  CLUS_1                            5                              1
  CLUS_2                           16                              8
  CLUS_3                            9                              2
  CLUS_4                            4                             10
  CLUS_5                            3                              8
  CLUS_6                            7                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(16Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(16Q22.1) MUTATED        2     18     13     13      4      4
  AMP PEAK 12(16Q22.1) WILD-TYPE     17      0      0      5      7      2
                                vv
clus                             CLUS_7
  AMP PEAK 12(16Q22.1) MUTATED        2
  AMP PEAK 12(16Q22.1) WILD-TYPE      3
D12V1, multiclass
        clus
vv       AMP PEAK 12(16Q22.1) MUTATED AMP PEAK 12(16Q22.1) WILD-TYPE
  CLUS_1                            2                             17
  CLUS_2                           18                              0
  CLUS_3                           13                              0
  CLUS_4                           13                              5
  CLUS_5                            4                              7
  CLUS_6                            4                              2
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(16Q22.1) MUTATED        7      5      6     13      5     12
  AMP PEAK 12(16Q22.1) WILD-TYPE      9      9      2      4      4      0
                                vv
clus                             CLUS_7
  AMP PEAK 12(16Q22.1) MUTATED        1
  AMP PEAK 12(16Q22.1) WILD-TYPE      1
D12V2, multiclass
        clus
vv       AMP PEAK 12(16Q22.1) MUTATED AMP PEAK 12(16Q22.1) WILD-TYPE
  CLUS_1                            7                              9
  CLUS_2                            5                              9
  CLUS_3                            6                              2
  CLUS_4                           13                              4
  CLUS_5                            5                              4
  CLUS_6                           12                              0
  CLUS_7                            1                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(16Q22.1) MUTATED        6      8      6     10
  AMP PEAK 12(16Q22.1) WILD-TYPE      4      3      4      4
D12V3, multiclass
        clus
vv       AMP PEAK 12(16Q22.1) MUTATED AMP PEAK 12(16Q22.1) WILD-TYPE
  CLUS_1                            6                              4
  CLUS_2                            8                              3
  CLUS_3                            6                              4
  CLUS_4                           10                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(16Q22.1) MUTATED        5      6      4      3      2      3
  AMP PEAK 12(16Q22.1) WILD-TYPE      3      1      3      0      2      1
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 12(16Q22.1) MUTATED        4      3
  AMP PEAK 12(16Q22.1) WILD-TYPE      2      3
D12V4, multiclass
        clus
vv       AMP PEAK 12(16Q22.1) MUTATED AMP PEAK 12(16Q22.1) WILD-TYPE
  CLUS_1                            5                              3
  CLUS_2                            6                              1
  CLUS_3                            4                              3
  CLUS_4                            3                              0
  CLUS_5                            2                              2
  CLUS_6                            3                              1
  CLUS_7                            4                              2
  CLUS_8                            3                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(16Q22.1) MUTATED        9     11     12     16
  AMP PEAK 12(16Q22.1) WILD-TYPE     15      3      4      7
D12V5, multiclass
        clus
vv       AMP PEAK 12(16Q22.1) MUTATED AMP PEAK 12(16Q22.1) WILD-TYPE
  CLUS_1                            9                             15
  CLUS_2                           11                              3
  CLUS_3                           12                              4
  CLUS_4                           16                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(16Q22.1) MUTATED        9     20      1     18
  AMP PEAK 12(16Q22.1) WILD-TYPE     14      3      6      6
D12V6, multiclass
        clus
vv       AMP PEAK 12(16Q22.1) MUTATED AMP PEAK 12(16Q22.1) WILD-TYPE
  CLUS_1                            9                             14
  CLUS_2                           20                              3
  CLUS_3                            1                              6
  CLUS_4                           18                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(16Q22.1) MUTATED       20     11     18
  AMP PEAK 12(16Q22.1) WILD-TYPE      9     13      7
D12V7, multiclass
        clus
vv       AMP PEAK 12(16Q22.1) MUTATED AMP PEAK 12(16Q22.1) WILD-TYPE
  CLUS_1                           20                              9
  CLUS_2                           11                             13
  CLUS_3                           18                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(16Q22.1) MUTATED       15     17      6      9      2
  AMP PEAK 12(16Q22.1) WILD-TYPE      1     10      5     11      2
D12V8, multiclass
        clus
vv       AMP PEAK 12(16Q22.1) MUTATED AMP PEAK 12(16Q22.1) WILD-TYPE
  CLUS_1                           15                              1
  CLUS_2                           17                             10
  CLUS_3                            6                              5
  CLUS_4                            9                             11
  CLUS_5                            2                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(16Q22.1) MUTATED        6     10     13     19
  AMP PEAK 12(16Q22.1) WILD-TYPE     10      9      3      7
D12V9, multiclass
        clus
vv       AMP PEAK 12(16Q22.1) MUTATED AMP PEAK 12(16Q22.1) WILD-TYPE
  CLUS_1                            6                             10
  CLUS_2                           10                              9
  CLUS_3                           13                              3
  CLUS_4                           19                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(16Q22.1) MUTATED        5     16      9      7      4      7
  AMP PEAK 12(16Q22.1) WILD-TYPE      1      8      2      7      7      4
D12V10, multiclass
        clus
vv       AMP PEAK 12(16Q22.1) MUTATED AMP PEAK 12(16Q22.1) WILD-TYPE
  CLUS_1                            5                              1
  CLUS_2                           16                              8
  CLUS_3                            9                              2
  CLUS_4                            7                              7
  CLUS_5                            4                              7
  CLUS_6                            7                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(16Q24.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(16Q24.2) MUTATED        3     18     12      5      5      4
  AMP PEAK 13(16Q24.2) WILD-TYPE     16      0      1     13      6      2
                                vv
clus                             CLUS_7
  AMP PEAK 13(16Q24.2) MUTATED        2
  AMP PEAK 13(16Q24.2) WILD-TYPE      3
D13V1, multiclass
        clus
vv       AMP PEAK 13(16Q24.2) MUTATED AMP PEAK 13(16Q24.2) WILD-TYPE
  CLUS_1                            3                             16
  CLUS_2                           18                              0
  CLUS_3                           12                              1
  CLUS_4                            5                             13
  CLUS_5                            5                              6
  CLUS_6                            4                              2
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(16Q24.2) MUTATED        3      5      5     13      5     12
  AMP PEAK 13(16Q24.2) WILD-TYPE     13      9      3      4      4      0
                                vv
clus                             CLUS_7
  AMP PEAK 13(16Q24.2) MUTATED        1
  AMP PEAK 13(16Q24.2) WILD-TYPE      1
D13V2, multiclass
        clus
vv       AMP PEAK 13(16Q24.2) MUTATED AMP PEAK 13(16Q24.2) WILD-TYPE
  CLUS_1                            3                             13
  CLUS_2                            5                              9
  CLUS_3                            5                              3
  CLUS_4                           13                              4
  CLUS_5                            5                              4
  CLUS_6                           12                              0
  CLUS_7                            1                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(16Q24.2) MUTATED        5      6      6      8
  AMP PEAK 13(16Q24.2) WILD-TYPE      5      5      4      6
D13V3, multiclass
        clus
vv       AMP PEAK 13(16Q24.2) MUTATED AMP PEAK 13(16Q24.2) WILD-TYPE
  CLUS_1                            5                              5
  CLUS_2                            6                              5
  CLUS_3                            6                              4
  CLUS_4                            8                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(16Q24.2) MUTATED        4      6      4      0      2      3
  AMP PEAK 13(16Q24.2) WILD-TYPE      4      1      3      3      2      1
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 13(16Q24.2) MUTATED        4      2
  AMP PEAK 13(16Q24.2) WILD-TYPE      2      4
D13V4, multiclass
        clus
vv       AMP PEAK 13(16Q24.2) MUTATED AMP PEAK 13(16Q24.2) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                            6                              1
  CLUS_3                            4                              3
  CLUS_4                            0                              3
  CLUS_5                            2                              2
  CLUS_6                            3                              1
  CLUS_7                            4                              2
  CLUS_8                            2                              4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(16Q24.2) MUTATED        5     11     12     16
  AMP PEAK 13(16Q24.2) WILD-TYPE     19      3      4      7
D13V5, multiclass
        clus
vv       AMP PEAK 13(16Q24.2) MUTATED AMP PEAK 13(16Q24.2) WILD-TYPE
  CLUS_1                            5                             19
  CLUS_2                           11                              3
  CLUS_3                           12                              4
  CLUS_4                           16                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(16Q24.2) MUTATED        5     20      1     18
  AMP PEAK 13(16Q24.2) WILD-TYPE     18      3      6      6
D13V6, multiclass
        clus
vv       AMP PEAK 13(16Q24.2) MUTATED AMP PEAK 13(16Q24.2) WILD-TYPE
  CLUS_1                            5                             18
  CLUS_2                           20                              3
  CLUS_3                            1                              6
  CLUS_4                           18                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(16Q24.2) MUTATED       16     10     18
  AMP PEAK 13(16Q24.2) WILD-TYPE     13     14      7
D13V7, multiclass
        clus
vv       AMP PEAK 13(16Q24.2) MUTATED AMP PEAK 13(16Q24.2) WILD-TYPE
  CLUS_1                           16                             13
  CLUS_2                           10                             14
  CLUS_3                           18                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(16Q24.2) MUTATED       14     17      6      5      2
  AMP PEAK 13(16Q24.2) WILD-TYPE      2     10      5     15      2
D13V8, multiclass
        clus
vv       AMP PEAK 13(16Q24.2) MUTATED AMP PEAK 13(16Q24.2) WILD-TYPE
  CLUS_1                           14                              2
  CLUS_2                           17                             10
  CLUS_3                            6                              5
  CLUS_4                            5                             15
  CLUS_5                            2                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(16Q24.2) MUTATED        3     10     12     18
  AMP PEAK 13(16Q24.2) WILD-TYPE     13      9      4      8
D13V9, multiclass
        clus
vv       AMP PEAK 13(16Q24.2) MUTATED AMP PEAK 13(16Q24.2) WILD-TYPE
  CLUS_1                            3                             13
  CLUS_2                           10                              9
  CLUS_3                           12                              4
  CLUS_4                           18                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(16Q24.2) MUTATED        5     16      8      3      4      7
  AMP PEAK 13(16Q24.2) WILD-TYPE      1      8      3     11      7      4
D13V10, multiclass
        clus
vv       AMP PEAK 13(16Q24.2) MUTATED AMP PEAK 13(16Q24.2) WILD-TYPE
  CLUS_1                            5                              1
  CLUS_2                           16                              8
  CLUS_3                            8                              3
  CLUS_4                            3                             11
  CLUS_5                            4                              7
  CLUS_6                            7                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(17Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(17Q25.3) MUTATED        2      1      0      8      3      3
  AMP PEAK 14(17Q25.3) WILD-TYPE     17     17     13     10      8      3
                                vv
clus                             CLUS_7
  AMP PEAK 14(17Q25.3) MUTATED        1
  AMP PEAK 14(17Q25.3) WILD-TYPE      4
D14V1, multiclass
        clus
vv       AMP PEAK 14(17Q25.3) MUTATED AMP PEAK 14(17Q25.3) WILD-TYPE
  CLUS_1                            2                             17
  CLUS_2                            1                             17
  CLUS_3                            0                             13
  CLUS_4                            8                             10
  CLUS_5                            3                              8
  CLUS_6                            3                              3
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(17Q25.3) MUTATED        4      1      1      3      1      1
  AMP PEAK 14(17Q25.3) WILD-TYPE     12     13      7     14      8     11
                                vv
clus                             CLUS_7
  AMP PEAK 14(17Q25.3) MUTATED        0
  AMP PEAK 14(17Q25.3) WILD-TYPE      2
D14V2, multiclass
        clus
vv       AMP PEAK 14(17Q25.3) MUTATED AMP PEAK 14(17Q25.3) WILD-TYPE
  CLUS_1                            4                             12
  CLUS_2                            1                             13
  CLUS_3                            1                              7
  CLUS_4                            3                             14
  CLUS_5                            1                              8
  CLUS_6                            1                             11
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(17Q25.3) MUTATED        3      3      1      2
  AMP PEAK 14(17Q25.3) WILD-TYPE      7      8      9     12
D14V3, multiclass
        clus
vv       AMP PEAK 14(17Q25.3) MUTATED AMP PEAK 14(17Q25.3) WILD-TYPE
  CLUS_1                            3                              7
  CLUS_2                            3                              8
  CLUS_3                            1                              9
  CLUS_4                            2                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(17Q25.3) MUTATED        2      0      1      1      3      1
  AMP PEAK 14(17Q25.3) WILD-TYPE      6      7      6      2      1      3
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 14(17Q25.3) MUTATED        0      1
  AMP PEAK 14(17Q25.3) WILD-TYPE      6      5
D14V4, multiclass
        clus
vv       AMP PEAK 14(17Q25.3) MUTATED AMP PEAK 14(17Q25.3) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            0                              7
  CLUS_3                            1                              6
  CLUS_4                            1                              2
  CLUS_5                            3                              1
  CLUS_6                            1                              3
  CLUS_7                            0                              6
  CLUS_8                            1                              5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(17Q25.3) MUTATED        6      2      0      3
  AMP PEAK 14(17Q25.3) WILD-TYPE     18     12     16     20
D14V5, multiclass
        clus
vv       AMP PEAK 14(17Q25.3) MUTATED AMP PEAK 14(17Q25.3) WILD-TYPE
  CLUS_1                            6                             18
  CLUS_2                            2                             12
  CLUS_3                            0                             16
  CLUS_4                            3                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(17Q25.3) MUTATED        5      2      1      3
  AMP PEAK 14(17Q25.3) WILD-TYPE     18     21      6     21
D14V6, multiclass
        clus
vv       AMP PEAK 14(17Q25.3) MUTATED AMP PEAK 14(17Q25.3) WILD-TYPE
  CLUS_1                            5                             18
  CLUS_2                            2                             21
  CLUS_3                            1                              6
  CLUS_4                            3                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(17Q25.3) MUTATED        4      4      3
  AMP PEAK 14(17Q25.3) WILD-TYPE     25     20     22
D14V7, multiclass
        clus
vv       AMP PEAK 14(17Q25.3) MUTATED AMP PEAK 14(17Q25.3) WILD-TYPE
  CLUS_1                            4                             25
  CLUS_2                            4                             20
  CLUS_3                            3                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(17Q25.3) MUTATED        1      5      1      3      1
  AMP PEAK 14(17Q25.3) WILD-TYPE     15     22     10     17      3
D14V8, multiclass
        clus
vv       AMP PEAK 14(17Q25.3) MUTATED AMP PEAK 14(17Q25.3) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            5                             22
  CLUS_3                            1                             10
  CLUS_4                            3                             17
  CLUS_5                            1                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(17Q25.3) MUTATED        5      2      1      3
  AMP PEAK 14(17Q25.3) WILD-TYPE     11     17     15     23
D14V9, multiclass
        clus
vv       AMP PEAK 14(17Q25.3) MUTATED AMP PEAK 14(17Q25.3) WILD-TYPE
  CLUS_1                            5                             11
  CLUS_2                            2                             17
  CLUS_3                            1                             15
  CLUS_4                            3                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(17Q25.3) MUTATED        1      5      0      2      2      1
  AMP PEAK 14(17Q25.3) WILD-TYPE      5     19     11     12      9     10
D14V10, multiclass
        clus
vv       AMP PEAK 14(17Q25.3) MUTATED AMP PEAK 14(17Q25.3) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            5                             19
  CLUS_3                            0                             11
  CLUS_4                            2                             12
  CLUS_5                            2                              9
  CLUS_6                            1                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(19P13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(19P13.12) MUTATED        4      9     13     15      7      5
  AMP PEAK 15(19P13.12) WILD-TYPE     15      9      0      3      4      1
                                 vv
clus                              CLUS_7
  AMP PEAK 15(19P13.12) MUTATED        5
  AMP PEAK 15(19P13.12) WILD-TYPE      0
D15V1, multiclass
        clus
vv       AMP PEAK 15(19P13.12) MUTATED AMP PEAK 15(19P13.12) WILD-TYPE
  CLUS_1                             4                              15
  CLUS_2                             9                               9
  CLUS_3                            13                               0
  CLUS_4                            15                               3
  CLUS_5                             7                               4
  CLUS_6                             5                               1
  CLUS_7                             5                               0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(19P13.12) MUTATED       12      6      5     14      6      5
  AMP PEAK 15(19P13.12) WILD-TYPE      4      8      3      3      3      7
                                 vv
clus                              CLUS_7
  AMP PEAK 15(19P13.12) MUTATED        2
  AMP PEAK 15(19P13.12) WILD-TYPE      0
D15V2, multiclass
        clus
vv       AMP PEAK 15(19P13.12) MUTATED AMP PEAK 15(19P13.12) WILD-TYPE
  CLUS_1                            12                               4
  CLUS_2                             6                               8
  CLUS_3                             5                               3
  CLUS_4                            14                               3
  CLUS_5                             6                               3
  CLUS_6                             5                               7
  CLUS_7                             2                               0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(19P13.12) MUTATED        5      7      8     12
  AMP PEAK 15(19P13.12) WILD-TYPE      5      4      2      2
D15V3, multiclass
        clus
vv       AMP PEAK 15(19P13.12) MUTATED AMP PEAK 15(19P13.12) WILD-TYPE
  CLUS_1                             5                               5
  CLUS_2                             7                               4
  CLUS_3                             8                               2
  CLUS_4                            12                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(19P13.12) MUTATED        8      7      4      3      1      3
  AMP PEAK 15(19P13.12) WILD-TYPE      0      0      3      0      3      1
                                 vv
clus                              CLUS_7 CLUS_8
  AMP PEAK 15(19P13.12) MUTATED        4      2
  AMP PEAK 15(19P13.12) WILD-TYPE      2      4
D15V4, multiclass
        clus
vv       AMP PEAK 15(19P13.12) MUTATED AMP PEAK 15(19P13.12) WILD-TYPE
  CLUS_1                             8                               0
  CLUS_2                             7                               0
  CLUS_3                             4                               3
  CLUS_4                             3                               0
  CLUS_5                             1                               3
  CLUS_6                             3                               1
  CLUS_7                             4                               2
  CLUS_8                             2                               4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(19P13.12) MUTATED       12     14     12     11
  AMP PEAK 15(19P13.12) WILD-TYPE     12      0      4     12
D15V5, multiclass
        clus
vv       AMP PEAK 15(19P13.12) MUTATED AMP PEAK 15(19P13.12) WILD-TYPE
  CLUS_1                            12                              12
  CLUS_2                            14                               0
  CLUS_3                            12                               4
  CLUS_4                            11                              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(19P13.12) MUTATED       15     21      1     12
  AMP PEAK 15(19P13.12) WILD-TYPE      8      2      6     12
D15V6, multiclass
        clus
vv       AMP PEAK 15(19P13.12) MUTATED AMP PEAK 15(19P13.12) WILD-TYPE
  CLUS_1                            15                               8
  CLUS_2                            21                               2
  CLUS_3                             1                               6
  CLUS_4                            12                              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(19P13.12) MUTATED       21     16     13
  AMP PEAK 15(19P13.12) WILD-TYPE      8      8     12
D15V7, multiclass
        clus
vv       AMP PEAK 15(19P13.12) MUTATED AMP PEAK 15(19P13.12) WILD-TYPE
  CLUS_1                            21                               8
  CLUS_2                            16                               8
  CLUS_3                            13                              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(19P13.12) MUTATED       13     15      6     13      3
  AMP PEAK 15(19P13.12) WILD-TYPE      3     12      5      7      1
D15V8, multiclass
        clus
vv       AMP PEAK 15(19P13.12) MUTATED AMP PEAK 15(19P13.12) WILD-TYPE
  CLUS_1                            13                               3
  CLUS_2                            15                              12
  CLUS_3                             6                               5
  CLUS_4                            13                               7
  CLUS_5                             3                               1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(19P13.12) MUTATED       10     12     14     13
  AMP PEAK 15(19P13.12) WILD-TYPE      6      7      2     13
D15V9, multiclass
        clus
vv       AMP PEAK 15(19P13.12) MUTATED AMP PEAK 15(19P13.12) WILD-TYPE
  CLUS_1                            10                               6
  CLUS_2                            12                               7
  CLUS_3                            14                               2
  CLUS_4                            13                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(19P13.12) MUTATED        5     15      8     10      5      6
  AMP PEAK 15(19P13.12) WILD-TYPE      1      9      3      4      6      5
D15V10, multiclass
        clus
vv       AMP PEAK 15(19P13.12) MUTATED AMP PEAK 15(19P13.12) WILD-TYPE
  CLUS_1                             5                               1
  CLUS_2                            15                               9
  CLUS_3                             8                               3
  CLUS_4                            10                               4
  CLUS_5                             5                               6
  CLUS_6                             6                               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 16(19Q12) MUTATED        4      7     13     16      7      4      5
  AMP PEAK 16(19Q12) WILD-TYPE     15     11      0      2      4      2      0
D16V1, multiclass
        clus
vv       AMP PEAK 16(19Q12) MUTATED AMP PEAK 16(19Q12) WILD-TYPE
  CLUS_1                          4                           15
  CLUS_2                          7                           11
  CLUS_3                         13                            0
  CLUS_4                         16                            2
  CLUS_5                          7                            4
  CLUS_6                          4                            2
  CLUS_7                          5                            0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 16(19Q12) MUTATED       12      6      4     14      5      5      2
  AMP PEAK 16(19Q12) WILD-TYPE      4      8      4      3      4      7      0
D16V2, multiclass
        clus
vv       AMP PEAK 16(19Q12) MUTATED AMP PEAK 16(19Q12) WILD-TYPE
  CLUS_1                         12                            4
  CLUS_2                          6                            8
  CLUS_3                          4                            4
  CLUS_4                         14                            3
  CLUS_5                          5                            4
  CLUS_6                          5                            7
  CLUS_7                          2                            0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(19Q12) MUTATED        5      6      7     11
  AMP PEAK 16(19Q12) WILD-TYPE      5      5      3      3
D16V3, multiclass
        clus
vv       AMP PEAK 16(19Q12) MUTATED AMP PEAK 16(19Q12) WILD-TYPE
  CLUS_1                          5                            5
  CLUS_2                          6                            5
  CLUS_3                          7                            3
  CLUS_4                         11                            3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 16(19Q12) MUTATED        7      6      4      3      1      2      4
  AMP PEAK 16(19Q12) WILD-TYPE      1      1      3      0      3      2      2
                              vv
clus                           CLUS_8
  AMP PEAK 16(19Q12) MUTATED        2
  AMP PEAK 16(19Q12) WILD-TYPE      4
D16V4, multiclass
        clus
vv       AMP PEAK 16(19Q12) MUTATED AMP PEAK 16(19Q12) WILD-TYPE
  CLUS_1                          7                            1
  CLUS_2                          6                            1
  CLUS_3                          4                            3
  CLUS_4                          3                            0
  CLUS_5                          1                            3
  CLUS_6                          2                            2
  CLUS_7                          4                            2
  CLUS_8                          2                            4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(19Q12) MUTATED       12     14     11     10
  AMP PEAK 16(19Q12) WILD-TYPE     12      0      5     13
D16V5, multiclass
        clus
vv       AMP PEAK 16(19Q12) MUTATED AMP PEAK 16(19Q12) WILD-TYPE
  CLUS_1                         12                           12
  CLUS_2                         14                            0
  CLUS_3                         11                            5
  CLUS_4                         10                           13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(19Q12) MUTATED       15     20      1     11
  AMP PEAK 16(19Q12) WILD-TYPE      8      3      6     13
D16V6, multiclass
        clus
vv       AMP PEAK 16(19Q12) MUTATED AMP PEAK 16(19Q12) WILD-TYPE
  CLUS_1                         15                            8
  CLUS_2                         20                            3
  CLUS_3                          1                            6
  CLUS_4                         11                           13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(19Q12) MUTATED       21     15     12
  AMP PEAK 16(19Q12) WILD-TYPE      8      9     13
D16V7, multiclass
        clus
vv       AMP PEAK 16(19Q12) MUTATED AMP PEAK 16(19Q12) WILD-TYPE
  CLUS_1                         21                            8
  CLUS_2                         15                            9
  CLUS_3                         12                           13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(19Q12) MUTATED       13     14      5     13      3
  AMP PEAK 16(19Q12) WILD-TYPE      3     13      6      7      1
D16V8, multiclass
        clus
vv       AMP PEAK 16(19Q12) MUTATED AMP PEAK 16(19Q12) WILD-TYPE
  CLUS_1                         13                            3
  CLUS_2                         14                           13
  CLUS_3                          5                            6
  CLUS_4                         13                            7
  CLUS_5                          3                            1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(19Q12) MUTATED       10     12     13     12
  AMP PEAK 16(19Q12) WILD-TYPE      6      7      3     14
D16V9, multiclass
        clus
vv       AMP PEAK 16(19Q12) MUTATED AMP PEAK 16(19Q12) WILD-TYPE
  CLUS_1                         10                            6
  CLUS_2                         12                            7
  CLUS_3                         13                            3
  CLUS_4                         12                           14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(19Q12) MUTATED        6     14      7     10      5      5
  AMP PEAK 16(19Q12) WILD-TYPE      0     10      4      4      6      6
D16V10, multiclass
        clus
vv       AMP PEAK 16(19Q12) MUTATED AMP PEAK 16(19Q12) WILD-TYPE
  CLUS_1                          6                            0
  CLUS_2                         14                           10
  CLUS_3                          7                            4
  CLUS_4                         10                            4
  CLUS_5                          5                            6
  CLUS_6                          5                            6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(XP11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(XP11.22) MUTATED        6     17      9      7      5      1
  AMP PEAK 17(XP11.22) WILD-TYPE     13      1      4     11      6      5
                                vv
clus                             CLUS_7
  AMP PEAK 17(XP11.22) MUTATED        4
  AMP PEAK 17(XP11.22) WILD-TYPE      1
D17V1, multiclass
        clus
vv       AMP PEAK 17(XP11.22) MUTATED AMP PEAK 17(XP11.22) WILD-TYPE
  CLUS_1                            6                             13
  CLUS_2                           17                              1
  CLUS_3                            9                              4
  CLUS_4                            7                             11
  CLUS_5                            5                              6
  CLUS_6                            1                              5
  CLUS_7                            4                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(XP11.22) MUTATED        8      5      3      9      6     10
  AMP PEAK 17(XP11.22) WILD-TYPE      8      9      5      8      3      2
                                vv
clus                             CLUS_7
  AMP PEAK 17(XP11.22) MUTATED        2
  AMP PEAK 17(XP11.22) WILD-TYPE      0
D17V2, multiclass
        clus
vv       AMP PEAK 17(XP11.22) MUTATED AMP PEAK 17(XP11.22) WILD-TYPE
  CLUS_1                            8                              8
  CLUS_2                            5                              9
  CLUS_3                            3                              5
  CLUS_4                            9                              8
  CLUS_5                            6                              3
  CLUS_6                           10                              2
  CLUS_7                            2                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(XP11.22) MUTATED        6      5      7     11
  AMP PEAK 17(XP11.22) WILD-TYPE      4      6      3      3
D17V3, multiclass
        clus
vv       AMP PEAK 17(XP11.22) MUTATED AMP PEAK 17(XP11.22) WILD-TYPE
  CLUS_1                            6                              4
  CLUS_2                            5                              6
  CLUS_3                            7                              3
  CLUS_4                           11                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(XP11.22) MUTATED        7      6      5      1      3      3
  AMP PEAK 17(XP11.22) WILD-TYPE      1      1      2      2      1      1
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 17(XP11.22) MUTATED        4      0
  AMP PEAK 17(XP11.22) WILD-TYPE      2      6
D17V4, multiclass
        clus
vv       AMP PEAK 17(XP11.22) MUTATED AMP PEAK 17(XP11.22) WILD-TYPE
  CLUS_1                            7                              1
  CLUS_2                            6                              1
  CLUS_3                            5                              2
  CLUS_4                            1                              2
  CLUS_5                            3                              1
  CLUS_6                            3                              1
  CLUS_7                            4                              2
  CLUS_8                            0                              6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(XP11.22) MUTATED        8     11     11     12
  AMP PEAK 17(XP11.22) WILD-TYPE     16      3      5     11
D17V5, multiclass
        clus
vv       AMP PEAK 17(XP11.22) MUTATED AMP PEAK 17(XP11.22) WILD-TYPE
  CLUS_1                            8                             16
  CLUS_2                           11                              3
  CLUS_3                           11                              5
  CLUS_4                           12                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(XP11.22) MUTATED        9     15      2     16
  AMP PEAK 17(XP11.22) WILD-TYPE     14      8      5      8
D17V6, multiclass
        clus
vv       AMP PEAK 17(XP11.22) MUTATED AMP PEAK 17(XP11.22) WILD-TYPE
  CLUS_1                            9                             14
  CLUS_2                           15                              8
  CLUS_3                            2                              5
  CLUS_4                           16                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(XP11.22) MUTATED       16     14     13
  AMP PEAK 17(XP11.22) WILD-TYPE     13     10     12
D17V7, multiclass
        clus
vv       AMP PEAK 17(XP11.22) MUTATED AMP PEAK 17(XP11.22) WILD-TYPE
  CLUS_1                           16                             13
  CLUS_2                           14                             10
  CLUS_3                           13                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(XP11.22) MUTATED       11     17      7      7      1
  AMP PEAK 17(XP11.22) WILD-TYPE      5     10      4     13      3
D17V8, multiclass
        clus
vv       AMP PEAK 17(XP11.22) MUTATED AMP PEAK 17(XP11.22) WILD-TYPE
  CLUS_1                           11                              5
  CLUS_2                           17                             10
  CLUS_3                            7                              4
  CLUS_4                            7                             13
  CLUS_5                            1                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(XP11.22) MUTATED        8      8     13     13
  AMP PEAK 17(XP11.22) WILD-TYPE      8     11      3     13
D17V9, multiclass
        clus
vv       AMP PEAK 17(XP11.22) MUTATED AMP PEAK 17(XP11.22) WILD-TYPE
  CLUS_1                            8                              8
  CLUS_2                            8                             11
  CLUS_3                           13                              3
  CLUS_4                           13                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(XP11.22) MUTATED        5     17      8      4      4      4
  AMP PEAK 17(XP11.22) WILD-TYPE      1      7      3     10      7      7
D17V10, multiclass
        clus
vv       AMP PEAK 17(XP11.22) MUTATED AMP PEAK 17(XP11.22) WILD-TYPE
  CLUS_1                            5                              1
  CLUS_2                           17                              7
  CLUS_3                            8                              3
  CLUS_4                            4                             10
  CLUS_5                            4                              7
  CLUS_6                            4                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 18(XQ28) MUTATED        3     16      8      8      5      1      5
  AMP PEAK 18(XQ28) WILD-TYPE     16      2      5     10      6      5      0
D18V1, multiclass
        clus
vv       AMP PEAK 18(XQ28) MUTATED AMP PEAK 18(XQ28) WILD-TYPE
  CLUS_1                         3                          16
  CLUS_2                        16                           2
  CLUS_3                         8                           5
  CLUS_4                         8                          10
  CLUS_5                         5                           6
  CLUS_6                         1                           5
  CLUS_7                         5                           0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 18(XQ28) MUTATED        6      5      1     10      6     10      2
  AMP PEAK 18(XQ28) WILD-TYPE     10      9      7      7      3      2      0
D18V2, multiclass
        clus
vv       AMP PEAK 18(XQ28) MUTATED AMP PEAK 18(XQ28) WILD-TYPE
  CLUS_1                         6                          10
  CLUS_2                         5                           9
  CLUS_3                         1                           7
  CLUS_4                        10                           7
  CLUS_5                         6                           3
  CLUS_6                        10                           2
  CLUS_7                         2                           0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(XQ28) MUTATED        7      3      7     10
  AMP PEAK 18(XQ28) WILD-TYPE      3      8      3      4
D18V3, multiclass
        clus
vv       AMP PEAK 18(XQ28) MUTATED AMP PEAK 18(XQ28) WILD-TYPE
  CLUS_1                         7                           3
  CLUS_2                         3                           8
  CLUS_3                         7                           3
  CLUS_4                        10                           4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 18(XQ28) MUTATED        6      5      6      1      2      3      4
  AMP PEAK 18(XQ28) WILD-TYPE      2      2      1      2      2      1      2
                             vv
clus                          CLUS_8
  AMP PEAK 18(XQ28) MUTATED        0
  AMP PEAK 18(XQ28) WILD-TYPE      6
D18V4, multiclass
        clus
vv       AMP PEAK 18(XQ28) MUTATED AMP PEAK 18(XQ28) WILD-TYPE
  CLUS_1                         6                           2
  CLUS_2                         5                           2
  CLUS_3                         6                           1
  CLUS_4                         1                           2
  CLUS_5                         2                           2
  CLUS_6                         3                           1
  CLUS_7                         4                           2
  CLUS_8                         0                           6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(XQ28) MUTATED        6     11     10     13
  AMP PEAK 18(XQ28) WILD-TYPE     18      3      6     10
D18V5, multiclass
        clus
vv       AMP PEAK 18(XQ28) MUTATED AMP PEAK 18(XQ28) WILD-TYPE
  CLUS_1                         6                          18
  CLUS_2                        11                           3
  CLUS_3                        10                           6
  CLUS_4                        13                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(XQ28) MUTATED        8     14      1     17
  AMP PEAK 18(XQ28) WILD-TYPE     15      9      6      7
D18V6, multiclass
        clus
vv       AMP PEAK 18(XQ28) MUTATED AMP PEAK 18(XQ28) WILD-TYPE
  CLUS_1                         8                          15
  CLUS_2                        14                           9
  CLUS_3                         1                           6
  CLUS_4                        17                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(XQ28) MUTATED       14     12     14
  AMP PEAK 18(XQ28) WILD-TYPE     15     12     11
D18V7, multiclass
        clus
vv       AMP PEAK 18(XQ28) MUTATED AMP PEAK 18(XQ28) WILD-TYPE
  CLUS_1                        14                          15
  CLUS_2                        12                          12
  CLUS_3                        14                          11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(XQ28) MUTATED        8     17      7      7      1
  AMP PEAK 18(XQ28) WILD-TYPE      8     10      4     13      3
D18V8, multiclass
        clus
vv       AMP PEAK 18(XQ28) MUTATED AMP PEAK 18(XQ28) WILD-TYPE
  CLUS_1                         8                           8
  CLUS_2                        17                          10
  CLUS_3                         7                           4
  CLUS_4                         7                          13
  CLUS_5                         1                           3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(XQ28) MUTATED        7      8     10     14
  AMP PEAK 18(XQ28) WILD-TYPE      9     11      6     12
D18V9, multiclass
        clus
vv       AMP PEAK 18(XQ28) MUTATED AMP PEAK 18(XQ28) WILD-TYPE
  CLUS_1                         7                           9
  CLUS_2                         8                          11
  CLUS_3                        10                           6
  CLUS_4                        14                          12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(XQ28) MUTATED        4     17      6      5      3      4
  AMP PEAK 18(XQ28) WILD-TYPE      2      7      5      9      8      7
D18V10, multiclass
        clus
vv       AMP PEAK 18(XQ28) MUTATED AMP PEAK 18(XQ28) WILD-TYPE
  CLUS_1                         4                           2
  CLUS_2                        17                           7
  CLUS_3                         6                           5
  CLUS_4                         5                           9
  CLUS_5                         3                           8
  CLUS_6                         4                           7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK  1(1P36.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.23) MUTATED        4      1      5     15      6      6
  DEL PEAK  1(1P36.23) WILD-TYPE     15     17      8      3      5      0
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.23) MUTATED        1
  DEL PEAK  1(1P36.23) WILD-TYPE      4
D19V1, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            4                             15
  CLUS_2                            1                             17
  CLUS_3                            5                              8
  CLUS_4                           15                              3
  CLUS_5                            6                              5
  CLUS_6                            6                              0
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.23) MUTATED       11      4      4      9      3      3
  DEL PEAK  1(1P36.23) WILD-TYPE      5     10      4      8      6      9
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.23) MUTATED        0
  DEL PEAK  1(1P36.23) WILD-TYPE      2
D19V2, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           11                              5
  CLUS_2                            4                             10
  CLUS_3                            4                              4
  CLUS_4                            9                              8
  CLUS_5                            3                              6
  CLUS_6                            3                              9
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.23) MUTATED        4      5      3      7
  DEL PEAK  1(1P36.23) WILD-TYPE      6      6      7      7
D19V3, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            4                              6
  CLUS_2                            5                              6
  CLUS_3                            3                              7
  CLUS_4                            7                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.23) MUTATED        4      1      1      3      1      2
  DEL PEAK  1(1P36.23) WILD-TYPE      4      6      6      0      3      2
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK  1(1P36.23) MUTATED        3      4
  DEL PEAK  1(1P36.23) WILD-TYPE      3      2
D19V4, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                            1                              6
  CLUS_3                            1                              6
  CLUS_4                            3                              0
  CLUS_5                            1                              3
  CLUS_6                            2                              2
  CLUS_7                            3                              3
  CLUS_8                            4                              2
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.23) MUTATED       15      6      4      8
  DEL PEAK  1(1P36.23) WILD-TYPE      9      8     12     15
D19V5, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           15                              9
  CLUS_2                            6                              8
  CLUS_3                            4                             12
  CLUS_4                            8                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.23) MUTATED       16      9      0      8
  DEL PEAK  1(1P36.23) WILD-TYPE      7     14      7     16
D19V6, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           16                              7
  CLUS_2                            9                             14
  CLUS_3                            0                              7
  CLUS_4                            8                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       13     10     11
  DEL PEAK  1(1P36.23) WILD-TYPE     16     14     14
D19V7, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           13                             16
  CLUS_2                           10                             14
  CLUS_3                           11                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.23) MUTATED        8     10      3     11      2
  DEL PEAK  1(1P36.23) WILD-TYPE      8     17      8      9      2
D19V8, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            8                              8
  CLUS_2                           10                             17
  CLUS_3                            3                              8
  CLUS_4                           11                              9
  CLUS_5                            2                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.23) MUTATED        9      9      4     11
  DEL PEAK  1(1P36.23) WILD-TYPE      7     10     12     15
D19V9, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            9                              7
  CLUS_2                            9                             10
  CLUS_3                            4                             12
  CLUS_4                           11                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.23) MUTATED        3      9      2     10      3      6
  DEL PEAK  1(1P36.23) WILD-TYPE      3     15      9      4      8      5
D19V10, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            9                             15
  CLUS_3                            2                              9
  CLUS_4                           10                              4
  CLUS_5                            3                              8
  CLUS_6                            6                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK  2(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(2Q22.1) MUTATED        2      0      3      3      5      4
  DEL PEAK  2(2Q22.1) WILD-TYPE     17     18     10     15      6      2
                               vv
clus                            CLUS_7
  DEL PEAK  2(2Q22.1) MUTATED        1
  DEL PEAK  2(2Q22.1) WILD-TYPE      4
D20V1, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           2                            17
  CLUS_2                           0                            18
  CLUS_3                           3                            10
  CLUS_4                           3                            15
  CLUS_5                           5                             6
  CLUS_6                           4                             2
  CLUS_7                           1                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(2Q22.1) MUTATED        1      2      2      6      4      1
  DEL PEAK  2(2Q22.1) WILD-TYPE     15     12      6     11      5     11
                               vv
clus                            CLUS_7
  DEL PEAK  2(2Q22.1) MUTATED        0
  DEL PEAK  2(2Q22.1) WILD-TYPE      2
D20V2, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           1                            15
  CLUS_2                           2                            12
  CLUS_3                           2                             6
  CLUS_4                           6                            11
  CLUS_5                           4                             5
  CLUS_6                           1                            11
  CLUS_7                           0                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2Q22.1) MUTATED        3      2      3      2
  DEL PEAK  2(2Q22.1) WILD-TYPE      7      9      7     12
D20V3, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           3                             7
  CLUS_2                           2                             9
  CLUS_3                           3                             7
  CLUS_4                           2                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(2Q22.1) MUTATED        1      1      1      0      2      1
  DEL PEAK  2(2Q22.1) WILD-TYPE      7      6      6      3      2      3
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  2(2Q22.1) MUTATED        2      2
  DEL PEAK  2(2Q22.1) WILD-TYPE      4      4
D20V4, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                           1                             6
  CLUS_3                           1                             6
  CLUS_4                           0                             3
  CLUS_5                           2                             2
  CLUS_6                           1                             3
  CLUS_7                           2                             4
  CLUS_8                           2                             4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2Q22.1) MUTATED        2      4      5      5
  DEL PEAK  2(2Q22.1) WILD-TYPE     22     10     11     18
D20V5, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           2                            22
  CLUS_2                           4                            10
  CLUS_3                           5                            11
  CLUS_4                           5                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2Q22.1) MUTATED        2      8      0      6
  DEL PEAK  2(2Q22.1) WILD-TYPE     21     15      7     18
D20V6, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           2                            21
  CLUS_2                           8                            15
  CLUS_3                           0                             7
  CLUS_4                           6                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2Q22.1) MUTATED        5      3      8
  DEL PEAK  2(2Q22.1) WILD-TYPE     24     21     17
D20V7, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           5                            24
  CLUS_2                           3                            21
  CLUS_3                           8                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(2Q22.1) MUTATED        4      7      2      2      1
  DEL PEAK  2(2Q22.1) WILD-TYPE     12     20      9     18      3
D20V8, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           4                            12
  CLUS_2                           7                            20
  CLUS_3                           2                             9
  CLUS_4                           2                            18
  CLUS_5                           1                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2Q22.1) MUTATED        1      5      3      7
  DEL PEAK  2(2Q22.1) WILD-TYPE     15     14     13     19
D20V9, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           1                            15
  CLUS_2                           5                            14
  CLUS_3                           3                            13
  CLUS_4                           7                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(2Q22.1) MUTATED        0      6      3      2      1      4
  DEL PEAK  2(2Q22.1) WILD-TYPE      6     18      8     12     10      7
D20V10, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           0                             6
  CLUS_2                           6                            18
  CLUS_3                           3                             8
  CLUS_4                           2                            12
  CLUS_5                           1                            10
  CLUS_6                           4                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK  3(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q37.3) MUTATED        2      0      4      5      5      4
  DEL PEAK  3(2Q37.3) WILD-TYPE     17     18      9     13      6      2
                               vv
clus                            CLUS_7
  DEL PEAK  3(2Q37.3) MUTATED        1
  DEL PEAK  3(2Q37.3) WILD-TYPE      4
D21V1, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           2                            17
  CLUS_2                           0                            18
  CLUS_3                           4                             9
  CLUS_4                           5                            13
  CLUS_5                           5                             6
  CLUS_6                           4                             2
  CLUS_7                           1                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q37.3) MUTATED        2      2      3      7      4      1
  DEL PEAK  3(2Q37.3) WILD-TYPE     14     12      5     10      5     11
                               vv
clus                            CLUS_7
  DEL PEAK  3(2Q37.3) MUTATED        0
  DEL PEAK  3(2Q37.3) WILD-TYPE      2
D21V2, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           2                            14
  CLUS_2                           2                            12
  CLUS_3                           3                             5
  CLUS_4                           7                            10
  CLUS_5                           4                             5
  CLUS_6                           1                            11
  CLUS_7                           0                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.3) MUTATED        1      2      3      4
  DEL PEAK  3(2Q37.3) WILD-TYPE      9      9      7     10
D21V3, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           1                             9
  CLUS_2                           2                             9
  CLUS_3                           3                             7
  CLUS_4                           4                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q37.3) MUTATED        3      1      1      0      0      1
  DEL PEAK  3(2Q37.3) WILD-TYPE      5      6      6      3      4      3
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  3(2Q37.3) MUTATED        2      2
  DEL PEAK  3(2Q37.3) WILD-TYPE      4      4
D21V4, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           3                             5
  CLUS_2                           1                             6
  CLUS_3                           1                             6
  CLUS_4                           0                             3
  CLUS_5                           0                             4
  CLUS_6                           1                             3
  CLUS_7                           2                             4
  CLUS_8                           2                             4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.3) MUTATED        3      5      5      5
  DEL PEAK  3(2Q37.3) WILD-TYPE     21      9     11     18
D21V5, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           3                            21
  CLUS_2                           5                             9
  CLUS_3                           5                            11
  CLUS_4                           5                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.3) MUTATED        3      9      0      6
  DEL PEAK  3(2Q37.3) WILD-TYPE     20     14      7     18
D21V6, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           3                            20
  CLUS_2                           9                            14
  CLUS_3                           0                             7
  CLUS_4                           6                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED        5      6      8
  DEL PEAK  3(2Q37.3) WILD-TYPE     24     18     17
D21V7, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           5                            24
  CLUS_2                           6                            18
  CLUS_3                           8                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q37.3) MUTATED        5      7      2      3      2
  DEL PEAK  3(2Q37.3) WILD-TYPE     11     20      9     17      2
D21V8, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           5                            11
  CLUS_2                           7                            20
  CLUS_3                           2                             9
  CLUS_4                           3                            17
  CLUS_5                           2                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.3) MUTATED        3      6      3      7
  DEL PEAK  3(2Q37.3) WILD-TYPE     13     13     13     19
D21V9, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           3                            13
  CLUS_2                           6                            13
  CLUS_3                           3                            13
  CLUS_4                           7                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q37.3) MUTATED        1      6      3      3      2      4
  DEL PEAK  3(2Q37.3) WILD-TYPE      5     18      8     11      9      7
D21V10, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           6                            18
  CLUS_3                           3                             8
  CLUS_4                           3                            11
  CLUS_5                           2                             9
  CLUS_6                           4                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK  4(3Q13.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3Q13.31) MUTATED        4      1      5      7      7      0
  DEL PEAK  4(3Q13.31) WILD-TYPE     15     17      8     11      4      6
                                vv
clus                             CLUS_7
  DEL PEAK  4(3Q13.31) MUTATED        1
  DEL PEAK  4(3Q13.31) WILD-TYPE      4
D22V1, multiclass
        clus
vv       DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE
  CLUS_1                            4                             15
  CLUS_2                            1                             17
  CLUS_3                            5                              8
  CLUS_4                            7                             11
  CLUS_5                            7                              4
  CLUS_6                            0                              6
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3Q13.31) MUTATED        5      3      3      7      1      2
  DEL PEAK  4(3Q13.31) WILD-TYPE     11     11      5     10      8     10
                                vv
clus                             CLUS_7
  DEL PEAK  4(3Q13.31) MUTATED        0
  DEL PEAK  4(3Q13.31) WILD-TYPE      2
D22V2, multiclass
        clus
vv       DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE
  CLUS_1                            5                             11
  CLUS_2                            3                             11
  CLUS_3                            3                              5
  CLUS_4                            7                             10
  CLUS_5                            1                              8
  CLUS_6                            2                             10
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3Q13.31) MUTATED        2      5      1      3
  DEL PEAK  4(3Q13.31) WILD-TYPE      8      6      9     11
D22V3, multiclass
        clus
vv       DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE
  CLUS_1                            2                              8
  CLUS_2                            5                              6
  CLUS_3                            1                              9
  CLUS_4                            3                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3Q13.31) MUTATED        1      2      1      2      2      0
  DEL PEAK  4(3Q13.31) WILD-TYPE      7      5      6      1      2      4
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK  4(3Q13.31) MUTATED        1      2
  DEL PEAK  4(3Q13.31) WILD-TYPE      5      4
D22V4, multiclass
        clus
vv       DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            2                              5
  CLUS_3                            1                              6
  CLUS_4                            2                              1
  CLUS_5                            2                              2
  CLUS_6                            0                              4
  CLUS_7                            1                              5
  CLUS_8                            2                              4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3Q13.31) MUTATED        7      2      8      4
  DEL PEAK  4(3Q13.31) WILD-TYPE     17     12      8     19
D22V5, multiclass
        clus
vv       DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE
  CLUS_1                            7                             17
  CLUS_2                            2                             12
  CLUS_3                            8                              8
  CLUS_4                            4                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3Q13.31) MUTATED        7     10      2      2
  DEL PEAK  4(3Q13.31) WILD-TYPE     16     13      5     22
D22V6, multiclass
        clus
vv       DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE
  CLUS_1                            7                             16
  CLUS_2                           10                             13
  CLUS_3                            2                              5
  CLUS_4                            2                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3Q13.31) MUTATED       11      6      4
  DEL PEAK  4(3Q13.31) WILD-TYPE     18     18     21
D22V7, multiclass
        clus
vv       DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE
  CLUS_1                           11                             18
  CLUS_2                            6                             18
  CLUS_3                            4                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3Q13.31) MUTATED        5      4      2      9      1
  DEL PEAK  4(3Q13.31) WILD-TYPE     11     23      9     11      3
D22V8, multiclass
        clus
vv       DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE
  CLUS_1                            5                             11
  CLUS_2                            4                             23
  CLUS_3                            2                              9
  CLUS_4                            9                             11
  CLUS_5                            1                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3Q13.31) MUTATED        5      5      7      3
  DEL PEAK  4(3Q13.31) WILD-TYPE     11     14      9     23
D22V9, multiclass
        clus
vv       DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE
  CLUS_1                            5                             11
  CLUS_2                            5                             14
  CLUS_3                            7                              9
  CLUS_4                            3                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3Q13.31) MUTATED        0      4      5      7      2      2
  DEL PEAK  4(3Q13.31) WILD-TYPE      6     20      6      7      9      9
D22V10, multiclass
        clus
vv       DEL PEAK  4(3Q13.31) MUTATED DEL PEAK  4(3Q13.31) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            4                             20
  CLUS_3                            5                              6
  CLUS_4                            7                              7
  CLUS_5                            2                              9
  CLUS_6                            2                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK  5(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4Q34.3) MUTATED        5      0      5     11      4      0
  DEL PEAK  5(4Q34.3) WILD-TYPE     14     18      8      7      7      6
                               vv
clus                            CLUS_7
  DEL PEAK  5(4Q34.3) MUTATED        0
  DEL PEAK  5(4Q34.3) WILD-TYPE      5
D23V1, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           5                            14
  CLUS_2                           0                            18
  CLUS_3                           5                             8
  CLUS_4                          11                             7
  CLUS_5                           4                             7
  CLUS_6                           0                             6
  CLUS_7                           0                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4Q34.3) MUTATED        8      3      3      5      0      0
  DEL PEAK  5(4Q34.3) WILD-TYPE      8     11      5     12      9     12
                               vv
clus                            CLUS_7
  DEL PEAK  5(4Q34.3) MUTATED        0
  DEL PEAK  5(4Q34.3) WILD-TYPE      2
D23V2, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           8                             8
  CLUS_2                           3                            11
  CLUS_3                           3                             5
  CLUS_4                           5                            12
  CLUS_5                           0                             9
  CLUS_6                           0                            12
  CLUS_7                           0                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q34.3) MUTATED        1      3      2      4
  DEL PEAK  5(4Q34.3) WILD-TYPE      9      8      8     10
D23V3, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           1                             9
  CLUS_2                           3                             8
  CLUS_3                           2                             8
  CLUS_4                           4                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4Q34.3) MUTATED        1      2      1      2      1      0
  DEL PEAK  5(4Q34.3) WILD-TYPE      7      5      6      1      3      4
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  5(4Q34.3) MUTATED        2      1
  DEL PEAK  5(4Q34.3) WILD-TYPE      4      5
D23V4, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                           2                             5
  CLUS_3                           1                             6
  CLUS_4                           2                             1
  CLUS_5                           1                             3
  CLUS_6                           0                             4
  CLUS_7                           2                             4
  CLUS_8                           1                             5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q34.3) MUTATED       11      2      3      2
  DEL PEAK  5(4Q34.3) WILD-TYPE     13     12     13     21
D23V5, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                          11                            13
  CLUS_2                           2                            12
  CLUS_3                           3                            13
  CLUS_4                           2                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q34.3) MUTATED       10      5      1      2
  DEL PEAK  5(4Q34.3) WILD-TYPE     13     18      6     22
D23V6, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                          10                            13
  CLUS_2                           5                            18
  CLUS_3                           1                             6
  CLUS_4                           2                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4Q34.3) MUTATED        9      8      2
  DEL PEAK  5(4Q34.3) WILD-TYPE     20     16     23
D23V7, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           9                            20
  CLUS_2                           8                            16
  CLUS_3                           2                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4Q34.3) MUTATED        2      7      0      9      1
  DEL PEAK  5(4Q34.3) WILD-TYPE     14     20     11     11      3
D23V8, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           2                            14
  CLUS_2                           7                            20
  CLUS_3                           0                            11
  CLUS_4                           9                            11
  CLUS_5                           1                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q34.3) MUTATED        7      7      3      2
  DEL PEAK  5(4Q34.3) WILD-TYPE      9     12     13     24
D23V9, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           7                             9
  CLUS_2                           7                            12
  CLUS_3                           3                            13
  CLUS_4                           2                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4Q34.3) MUTATED        1      6      1      9      2      0
  DEL PEAK  5(4Q34.3) WILD-TYPE      5     18     10      5      9     11
D23V10, multiclass
        clus
vv       DEL PEAK  5(4Q34.3) MUTATED DEL PEAK  5(4Q34.3) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           6                            18
  CLUS_3                           1                            10
  CLUS_4                           9                             5
  CLUS_5                           2                             9
  CLUS_6                           0                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK  6(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q34.3) MUTATED        4      0      3     14      4      2
  DEL PEAK  6(4Q34.3) WILD-TYPE     15     18     10      4      7      4
                               vv
clus                            CLUS_7
  DEL PEAK  6(4Q34.3) MUTATED        1
  DEL PEAK  6(4Q34.3) WILD-TYPE      4
D24V1, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           4                            15
  CLUS_2                           0                            18
  CLUS_3                           3                            10
  CLUS_4                          14                             4
  CLUS_5                           4                             7
  CLUS_6                           2                             4
  CLUS_7                           1                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q34.3) MUTATED        9      3      3      7      2      0
  DEL PEAK  6(4Q34.3) WILD-TYPE      7     11      5     10      7     12
                               vv
clus                            CLUS_7
  DEL PEAK  6(4Q34.3) MUTATED        0
  DEL PEAK  6(4Q34.3) WILD-TYPE      2
D24V2, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           9                             7
  CLUS_2                           3                            11
  CLUS_3                           3                             5
  CLUS_4                           7                            10
  CLUS_5                           2                             7
  CLUS_6                           0                            12
  CLUS_7                           0                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        2      3      3      6
  DEL PEAK  6(4Q34.3) WILD-TYPE      8      8      7      8
D24V3, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           2                             8
  CLUS_2                           3                             8
  CLUS_3                           3                             7
  CLUS_4                           6                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q34.3) MUTATED        3      3      1      3      1      1
  DEL PEAK  6(4Q34.3) WILD-TYPE      5      4      6      0      3      3
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  6(4Q34.3) MUTATED        2      0
  DEL PEAK  6(4Q34.3) WILD-TYPE      4      6
D24V4, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           3                             5
  CLUS_2                           3                             4
  CLUS_3                           1                             6
  CLUS_4                           3                             0
  CLUS_5                           1                             3
  CLUS_6                           1                             3
  CLUS_7                           2                             4
  CLUS_8                           0                             6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED       11      4      4      4
  DEL PEAK  6(4Q34.3) WILD-TYPE     13     10     12     19
D24V5, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          11                            13
  CLUS_2                           4                            10
  CLUS_3                           4                            12
  CLUS_4                           4                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED       10      8      1      4
  DEL PEAK  6(4Q34.3) WILD-TYPE     13     15      6     20
D24V6, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          10                            13
  CLUS_2                           8                            15
  CLUS_3                           1                             6
  CLUS_4                           4                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       10     10      4
  DEL PEAK  6(4Q34.3) WILD-TYPE     19     14     21
D24V7, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          10                            19
  CLUS_2                          10                            14
  CLUS_3                           4                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q34.3) MUTATED        4      8      1     10      1
  DEL PEAK  6(4Q34.3) WILD-TYPE     12     19     10     10      3
D24V8, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           4                            12
  CLUS_2                           8                            19
  CLUS_3                           1                            10
  CLUS_4                          10                            10
  CLUS_5                           1                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED       10      6      4      4
  DEL PEAK  6(4Q34.3) WILD-TYPE      6     13     12     22
D24V9, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          10                             6
  CLUS_2                           6                            13
  CLUS_3                           4                            12
  CLUS_4                           4                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q34.3) MUTATED        2      7      2     10      2      1
  DEL PEAK  6(4Q34.3) WILD-TYPE      4     17      9      4      9     10
D24V10, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           2                             4
  CLUS_2                           7                            17
  CLUS_3                           2                             9
  CLUS_4                          10                             4
  CLUS_5                           2                             9
  CLUS_6                           1                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK  7(4Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4Q35.1) MUTATED        4      1      4     13      5      1
  DEL PEAK  7(4Q35.1) WILD-TYPE     15     17      9      5      6      5
                               vv
clus                            CLUS_7
  DEL PEAK  7(4Q35.1) MUTATED        2
  DEL PEAK  7(4Q35.1) WILD-TYPE      3
D25V1, multiclass
        clus
vv       DEL PEAK  7(4Q35.1) MUTATED DEL PEAK  7(4Q35.1) WILD-TYPE
  CLUS_1                           4                            15
  CLUS_2                           1                            17
  CLUS_3                           4                             9
  CLUS_4                          13                             5
  CLUS_5                           5                             6
  CLUS_6                           1                             5
  CLUS_7                           2                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4Q35.1) MUTATED        9      3      3      8      1      1
  DEL PEAK  7(4Q35.1) WILD-TYPE      7     11      5      9      8     11
                               vv
clus                            CLUS_7
  DEL PEAK  7(4Q35.1) MUTATED        0
  DEL PEAK  7(4Q35.1) WILD-TYPE      2
D25V2, multiclass
        clus
vv       DEL PEAK  7(4Q35.1) MUTATED DEL PEAK  7(4Q35.1) WILD-TYPE
  CLUS_1                           9                             7
  CLUS_2                           3                            11
  CLUS_3                           3                             5
  CLUS_4                           8                             9
  CLUS_5                           1                             8
  CLUS_6                           1                            11
  CLUS_7                           0                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q35.1) MUTATED        1      3      3      6
  DEL PEAK  7(4Q35.1) WILD-TYPE      9      8      7      8
D25V3, multiclass
        clus
vv       DEL PEAK  7(4Q35.1) MUTATED DEL PEAK  7(4Q35.1) WILD-TYPE
  CLUS_1                           1                             9
  CLUS_2                           3                             8
  CLUS_3                           3                             7
  CLUS_4                           6                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4Q35.1) MUTATED        2      3      1      2      1      1
  DEL PEAK  7(4Q35.1) WILD-TYPE      6      4      6      1      3      3
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  7(4Q35.1) MUTATED        3      0
  DEL PEAK  7(4Q35.1) WILD-TYPE      3      6
D25V4, multiclass
        clus
vv       DEL PEAK  7(4Q35.1) MUTATED DEL PEAK  7(4Q35.1) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           3                             4
  CLUS_3                           1                             6
  CLUS_4                           2                             1
  CLUS_5                           1                             3
  CLUS_6                           1                             3
  CLUS_7                           3                             3
  CLUS_8                           0                             6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q35.1) MUTATED       11      4      6      3
  DEL PEAK  7(4Q35.1) WILD-TYPE     13     10     10     20
D25V5, multiclass
        clus
vv       DEL PEAK  7(4Q35.1) MUTATED DEL PEAK  7(4Q35.1) WILD-TYPE
  CLUS_1                          11                            13
  CLUS_2                           4                            10
  CLUS_3                           6                            10
  CLUS_4                           3                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q35.1) MUTATED       10     10      1      3
  DEL PEAK  7(4Q35.1) WILD-TYPE     13     13      6     21
D25V6, multiclass
        clus
vv       DEL PEAK  7(4Q35.1) MUTATED DEL PEAK  7(4Q35.1) WILD-TYPE
  CLUS_1                          10                            13
  CLUS_2                          10                            13
  CLUS_3                           1                             6
  CLUS_4                           3                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q35.1) MUTATED       10     10      5
  DEL PEAK  7(4Q35.1) WILD-TYPE     19     14     20
D25V7, multiclass
        clus
vv       DEL PEAK  7(4Q35.1) MUTATED DEL PEAK  7(4Q35.1) WILD-TYPE
  CLUS_1                          10                            19
  CLUS_2                          10                            14
  CLUS_3                           5                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q35.1) MUTATED        6      7      1     10      1
  DEL PEAK  7(4Q35.1) WILD-TYPE     10     20     10     10      3
D25V8, multiclass
        clus
vv       DEL PEAK  7(4Q35.1) MUTATED DEL PEAK  7(4Q35.1) WILD-TYPE
  CLUS_1                           6                            10
  CLUS_2                           7                            20
  CLUS_3                           1                            10
  CLUS_4                          10                            10
  CLUS_5                           1                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q35.1) MUTATED        9      6      4      5
  DEL PEAK  7(4Q35.1) WILD-TYPE      7     13     12     21
D25V9, multiclass
        clus
vv       DEL PEAK  7(4Q35.1) MUTATED DEL PEAK  7(4Q35.1) WILD-TYPE
  CLUS_1                           9                             7
  CLUS_2                           6                            13
  CLUS_3                           4                            12
  CLUS_4                           5                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4Q35.1) MUTATED        1      6      2     10      2      3
  DEL PEAK  7(4Q35.1) WILD-TYPE      5     18      9      4      9      8
D25V10, multiclass
        clus
vv       DEL PEAK  7(4Q35.1) MUTATED DEL PEAK  7(4Q35.1) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           6                            18
  CLUS_3                           2                             9
  CLUS_4                          10                             4
  CLUS_5                           2                             9
  CLUS_6                           3                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  8(6P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(6P24.3) MUTATED        6      0      3      7      0      4
  DEL PEAK  8(6P24.3) WILD-TYPE     13     18     10     11     11      2
                               vv
clus                            CLUS_7
  DEL PEAK  8(6P24.3) MUTATED        0
  DEL PEAK  8(6P24.3) WILD-TYPE      5
D26V1, multiclass
        clus
vv       DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                           6                            13
  CLUS_2                           0                            18
  CLUS_3                           3                            10
  CLUS_4                           7                            11
  CLUS_5                           0                            11
  CLUS_6                           4                             2
  CLUS_7                           0                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(6P24.3) MUTATED        3      5      2      3      2      1
  DEL PEAK  8(6P24.3) WILD-TYPE     13      9      6     14      7     11
                               vv
clus                            CLUS_7
  DEL PEAK  8(6P24.3) MUTATED        0
  DEL PEAK  8(6P24.3) WILD-TYPE      2
D26V2, multiclass
        clus
vv       DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                           3                            13
  CLUS_2                           5                             9
  CLUS_3                           2                             6
  CLUS_4                           3                            14
  CLUS_5                           2                             7
  CLUS_6                           1                            11
  CLUS_7                           0                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6P24.3) MUTATED        3      3      1      2
  DEL PEAK  8(6P24.3) WILD-TYPE      7      8      9     12
D26V3, multiclass
        clus
vv       DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                           3                             7
  CLUS_2                           3                             8
  CLUS_3                           1                             9
  CLUS_4                           2                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(6P24.3) MUTATED        2      0      0      1      2      1
  DEL PEAK  8(6P24.3) WILD-TYPE      6      7      7      2      2      3
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  8(6P24.3) MUTATED        1      2
  DEL PEAK  8(6P24.3) WILD-TYPE      5      4
D26V4, multiclass
        clus
vv       DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           0                             7
  CLUS_3                           0                             7
  CLUS_4                           1                             2
  CLUS_5                           2                             2
  CLUS_6                           1                             3
  CLUS_7                           1                             5
  CLUS_8                           2                             4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6P24.3) MUTATED        7      2      2      5
  DEL PEAK  8(6P24.3) WILD-TYPE     17     12     14     18
D26V5, multiclass
        clus
vv       DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                           7                            17
  CLUS_2                           2                            12
  CLUS_3                           2                            14
  CLUS_4                           5                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6P24.3) MUTATED        5      4      3      4
  DEL PEAK  8(6P24.3) WILD-TYPE     18     19      4     20
D26V6, multiclass
        clus
vv       DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                           5                            18
  CLUS_2                           4                            19
  CLUS_3                           3                             4
  CLUS_4                           4                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6P24.3) MUTATED        5      7      4
  DEL PEAK  8(6P24.3) WILD-TYPE     24     17     21
D26V7, multiclass
        clus
vv       DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                           5                            24
  CLUS_2                           7                            17
  CLUS_3                           4                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(6P24.3) MUTATED        1      5      1      7      2
  DEL PEAK  8(6P24.3) WILD-TYPE     15     22     10     13      2
D26V8, multiclass
        clus
vv       DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                           1                            15
  CLUS_2                           5                            22
  CLUS_3                           1                            10
  CLUS_4                           7                            13
  CLUS_5                           2                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6P24.3) MUTATED        4      6      2      4
  DEL PEAK  8(6P24.3) WILD-TYPE     12     13     14     22
D26V9, multiclass
        clus
vv       DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                           4                            12
  CLUS_2                           6                            13
  CLUS_3                           2                            14
  CLUS_4                           4                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(6P24.3) MUTATED        0      3      2      4      5      2
  DEL PEAK  8(6P24.3) WILD-TYPE      6     21      9     10      6      9
D26V10, multiclass
        clus
vv       DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                           0                             6
  CLUS_2                           3                            21
  CLUS_3                           2                             9
  CLUS_4                           4                            10
  CLUS_5                           5                             6
  CLUS_6                           2                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  9(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  9(6Q26) MUTATED        5      0      4      9      0      3      0
  DEL PEAK  9(6Q26) WILD-TYPE     14     18      9      9     11      3      5
D27V1, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                         5                          14
  CLUS_2                         0                          18
  CLUS_3                         4                           9
  CLUS_4                         9                           9
  CLUS_5                         0                          11
  CLUS_6                         3                           3
  CLUS_7                         0                           5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  9(6Q26) MUTATED        4      4      4      3      2      0      1
  DEL PEAK  9(6Q26) WILD-TYPE     12     10      4     14      7     12      1
D27V2, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                         4                          12
  CLUS_2                         4                          10
  CLUS_3                         4                           4
  CLUS_4                         3                          14
  CLUS_5                         2                           7
  CLUS_6                         0                          12
  CLUS_7                         1                           1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q26) MUTATED        3      2      1      5
  DEL PEAK  9(6Q26) WILD-TYPE      7      9      9      9
D27V3, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                         3                           7
  CLUS_2                         2                           9
  CLUS_3                         1                           9
  CLUS_4                         5                           9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  9(6Q26) MUTATED        2      1      0      1      2      0      2
  DEL PEAK  9(6Q26) WILD-TYPE      6      6      7      2      2      4      4
                             vv
clus                          CLUS_8
  DEL PEAK  9(6Q26) MUTATED        3
  DEL PEAK  9(6Q26) WILD-TYPE      3
D27V4, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                         2                           6
  CLUS_2                         1                           6
  CLUS_3                         0                           7
  CLUS_4                         1                           2
  CLUS_5                         2                           2
  CLUS_6                         0                           4
  CLUS_7                         2                           4
  CLUS_8                         3                           3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q26) MUTATED        9      2      3      4
  DEL PEAK  9(6Q26) WILD-TYPE     15     12     13     19
D27V5, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                         9                          15
  CLUS_2                         2                          12
  CLUS_3                         3                          13
  CLUS_4                         4                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q26) MUTATED        8      5      2      3
  DEL PEAK  9(6Q26) WILD-TYPE     15     18      5     21
D27V6, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                         8                          15
  CLUS_2                         5                          18
  CLUS_3                         2                           5
  CLUS_4                         3                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6Q26) MUTATED        8      7      3
  DEL PEAK  9(6Q26) WILD-TYPE     21     17     22
D27V7, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                         8                          21
  CLUS_2                         7                          17
  CLUS_3                         3                          22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6Q26) MUTATED        2      7      1      6      2
  DEL PEAK  9(6Q26) WILD-TYPE     14     20     10     14      2
D27V8, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                         2                          14
  CLUS_2                         7                          20
  CLUS_3                         1                          10
  CLUS_4                         6                          14
  CLUS_5                         2                           2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q26) MUTATED        3      7      4      4
  DEL PEAK  9(6Q26) WILD-TYPE     13     12     12     22
D27V9, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                         3                          13
  CLUS_2                         7                          12
  CLUS_3                         4                          12
  CLUS_4                         4                          22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6Q26) MUTATED        0      4      4      5      4      1
  DEL PEAK  9(6Q26) WILD-TYPE      6     20      7      9      7     10
D27V10, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                         0                           6
  CLUS_2                         4                          20
  CLUS_3                         4                           7
  CLUS_4                         5                           9
  CLUS_5                         4                           7
  CLUS_6                         1                          10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK 10(7Q36.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(7Q36.3) MUTATED        2      0      1      4      3      1
  DEL PEAK 10(7Q36.3) WILD-TYPE     17     18     12     14      8      5
                               vv
clus                            CLUS_7
  DEL PEAK 10(7Q36.3) MUTATED        0
  DEL PEAK 10(7Q36.3) WILD-TYPE      5
D28V1, multiclass
        clus
vv       DEL PEAK 10(7Q36.3) MUTATED DEL PEAK 10(7Q36.3) WILD-TYPE
  CLUS_1                           2                            17
  CLUS_2                           0                            18
  CLUS_3                           1                            12
  CLUS_4                           4                            14
  CLUS_5                           3                             8
  CLUS_6                           1                             5
  CLUS_7                           0                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(7Q36.3) MUTATED        4      1      1      1      0      1
  DEL PEAK 10(7Q36.3) WILD-TYPE     12     13      7     16      9     11
                               vv
clus                            CLUS_7
  DEL PEAK 10(7Q36.3) MUTATED        0
  DEL PEAK 10(7Q36.3) WILD-TYPE      2
D28V2, multiclass
        clus
vv       DEL PEAK 10(7Q36.3) MUTATED DEL PEAK 10(7Q36.3) WILD-TYPE
  CLUS_1                           4                            12
  CLUS_2                           1                            13
  CLUS_3                           1                             7
  CLUS_4                           1                            16
  CLUS_5                           0                             9
  CLUS_6                           1                            11
  CLUS_7                           0                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(7Q36.3) MUTATED        0      2      0      1
  DEL PEAK 10(7Q36.3) WILD-TYPE     10      9     10     13
D28V3, multiclass
        clus
vv       DEL PEAK 10(7Q36.3) MUTATED DEL PEAK 10(7Q36.3) WILD-TYPE
  CLUS_1                           0                            10
  CLUS_2                           2                             9
  CLUS_3                           0                            10
  CLUS_4                           1                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(7Q36.3) MUTATED        1      0      0      0      0      1
  DEL PEAK 10(7Q36.3) WILD-TYPE      7      7      7      3      4      3
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 10(7Q36.3) MUTATED        0      1
  DEL PEAK 10(7Q36.3) WILD-TYPE      6      5
D28V4, multiclass
        clus
vv       DEL PEAK 10(7Q36.3) MUTATED DEL PEAK 10(7Q36.3) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                           0                             7
  CLUS_3                           0                             7
  CLUS_4                           0                             3
  CLUS_5                           0                             4
  CLUS_6                           1                             3
  CLUS_7                           0                             6
  CLUS_8                           1                             5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(7Q36.3) MUTATED        5      0      1      1
  DEL PEAK 10(7Q36.3) WILD-TYPE     19     14     15     22
D28V5, multiclass
        clus
vv       DEL PEAK 10(7Q36.3) MUTATED DEL PEAK 10(7Q36.3) WILD-TYPE
  CLUS_1                           5                            19
  CLUS_2                           0                            14
  CLUS_3                           1                            15
  CLUS_4                           1                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(7Q36.3) MUTATED        4      1      1      1
  DEL PEAK 10(7Q36.3) WILD-TYPE     19     22      6     23
D28V6, multiclass
        clus
vv       DEL PEAK 10(7Q36.3) MUTATED DEL PEAK 10(7Q36.3) WILD-TYPE
  CLUS_1                           4                            19
  CLUS_2                           1                            22
  CLUS_3                           1                             6
  CLUS_4                           1                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(7Q36.3) MUTATED        3      3      2
  DEL PEAK 10(7Q36.3) WILD-TYPE     26     21     23
D28V7, multiclass
        clus
vv       DEL PEAK 10(7Q36.3) MUTATED DEL PEAK 10(7Q36.3) WILD-TYPE
  CLUS_1                           3                            26
  CLUS_2                           3                            21
  CLUS_3                           2                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(7Q36.3) MUTATED        2      2      1      2      1
  DEL PEAK 10(7Q36.3) WILD-TYPE     14     25     10     18      3
D28V8, multiclass
        clus
vv       DEL PEAK 10(7Q36.3) MUTATED DEL PEAK 10(7Q36.3) WILD-TYPE
  CLUS_1                           2                            14
  CLUS_2                           2                            25
  CLUS_3                           1                            10
  CLUS_4                           2                            18
  CLUS_5                           1                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(7Q36.3) MUTATED        3      2      1      2
  DEL PEAK 10(7Q36.3) WILD-TYPE     13     17     15     24
D28V9, multiclass
        clus
vv       DEL PEAK 10(7Q36.3) MUTATED DEL PEAK 10(7Q36.3) WILD-TYPE
  CLUS_1                           3                            13
  CLUS_2                           2                            17
  CLUS_3                           1                            15
  CLUS_4                           2                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(7Q36.3) MUTATED        1      1      0      2      2      2
  DEL PEAK 10(7Q36.3) WILD-TYPE      5     23     11     12      9      9
D28V10, multiclass
        clus
vv       DEL PEAK 10(7Q36.3) MUTATED DEL PEAK 10(7Q36.3) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           1                            23
  CLUS_3                           0                            11
  CLUS_4                           2                            12
  CLUS_5                           2                             9
  CLUS_6                           2                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK 11(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 11(9P23) MUTATED        7      0      0     12      3      0      1
  DEL PEAK 11(9P23) WILD-TYPE     12     18     13      6      8      6      4
D29V1, multiclass
        clus
vv       DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE
  CLUS_1                         7                          12
  CLUS_2                         0                          18
  CLUS_3                         0                          13
  CLUS_4                        12                           6
  CLUS_5                         3                           8
  CLUS_6                         0                           6
  CLUS_7                         1                           4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 11(9P23) MUTATED        9      5      3      3      0      0      0
  DEL PEAK 11(9P23) WILD-TYPE      7      9      5     14      9     12      2
D29V2, multiclass
        clus
vv       DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE
  CLUS_1                         9                           7
  CLUS_2                         5                           9
  CLUS_3                         3                           5
  CLUS_4                         3                          14
  CLUS_5                         0                           9
  CLUS_6                         0                          12
  CLUS_7                         0                           2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P23) MUTATED        3      2      1      7
  DEL PEAK 11(9P23) WILD-TYPE      7      9      9      7
D29V3, multiclass
        clus
vv       DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE
  CLUS_1                         3                           7
  CLUS_2                         2                           9
  CLUS_3                         1                           9
  CLUS_4                         7                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 11(9P23) MUTATED        3      1      0      2      3      0      3
  DEL PEAK 11(9P23) WILD-TYPE      5      6      7      1      1      4      3
                             vv
clus                          CLUS_8
  DEL PEAK 11(9P23) MUTATED        1
  DEL PEAK 11(9P23) WILD-TYPE      5
D29V4, multiclass
        clus
vv       DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE
  CLUS_1                         3                           5
  CLUS_2                         1                           6
  CLUS_3                         0                           7
  CLUS_4                         2                           1
  CLUS_5                         3                           1
  CLUS_6                         0                           4
  CLUS_7                         3                           3
  CLUS_8                         1                           5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P23) MUTATED       15      1      3      1
  DEL PEAK 11(9P23) WILD-TYPE      9     13     13     22
D29V5, multiclass
        clus
vv       DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE
  CLUS_1                        15                           9
  CLUS_2                         1                          13
  CLUS_3                         3                          13
  CLUS_4                         1                          22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P23) MUTATED       13      4      2      1
  DEL PEAK 11(9P23) WILD-TYPE     10     19      5     23
D29V6, multiclass
        clus
vv       DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE
  CLUS_1                        13                          10
  CLUS_2                         4                          19
  CLUS_3                         2                           5
  CLUS_4                         1                          23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(9P23) MUTATED        9      9      2
  DEL PEAK 11(9P23) WILD-TYPE     20     15     23
D29V7, multiclass
        clus
vv       DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE
  CLUS_1                         9                          20
  CLUS_2                         9                          15
  CLUS_3                         2                          23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(9P23) MUTATED        5      6      0      9      0
  DEL PEAK 11(9P23) WILD-TYPE     11     21     11     11      4
D29V8, multiclass
        clus
vv       DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE
  CLUS_1                         5                          11
  CLUS_2                         6                          21
  CLUS_3                         0                          11
  CLUS_4                         9                          11
  CLUS_5                         0                           4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P23) MUTATED       10      4      2      3
  DEL PEAK 11(9P23) WILD-TYPE      6     15     14     23
D29V9, multiclass
        clus
vv       DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE
  CLUS_1                        10                           6
  CLUS_2                         4                          15
  CLUS_3                         2                          14
  CLUS_4                         3                          23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(9P23) MUTATED        1      5      2      7      3      1
  DEL PEAK 11(9P23) WILD-TYPE      5     19      9      7      8     10
D29V10, multiclass
        clus
vv       DEL PEAK 11(9P23) MUTATED DEL PEAK 11(9P23) WILD-TYPE
  CLUS_1                         1                           5
  CLUS_2                         5                          19
  CLUS_3                         2                           9
  CLUS_4                         7                           7
  CLUS_5                         3                           8
  CLUS_6                         1                          10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK 12(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(9P21.3) MUTATED        8      1      0     12      4      0
  DEL PEAK 12(9P21.3) WILD-TYPE     11     17     13      6      7      6
                               vv
clus                            CLUS_7
  DEL PEAK 12(9P21.3) MUTATED        1
  DEL PEAK 12(9P21.3) WILD-TYPE      4
D30V1, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                           8                            11
  CLUS_2                           1                            17
  CLUS_3                           0                            13
  CLUS_4                          12                             6
  CLUS_5                           4                             7
  CLUS_6                           0                             6
  CLUS_7                           1                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(9P21.3) MUTATED       10      5      4      3      0      1
  DEL PEAK 12(9P21.3) WILD-TYPE      6      9      4     14      9     11
                               vv
clus                            CLUS_7
  DEL PEAK 12(9P21.3) MUTATED        0
  DEL PEAK 12(9P21.3) WILD-TYPE      2
D30V2, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                          10                             6
  CLUS_2                           5                             9
  CLUS_3                           4                             4
  CLUS_4                           3                            14
  CLUS_5                           0                             9
  CLUS_6                           1                            11
  CLUS_7                           0                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P21.3) MUTATED        4      3      1      7
  DEL PEAK 12(9P21.3) WILD-TYPE      6      8      9      7
D30V3, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                           4                             6
  CLUS_2                           3                             8
  CLUS_3                           1                             9
  CLUS_4                           7                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(9P21.3) MUTATED        3      1      1      2      3      0
  DEL PEAK 12(9P21.3) WILD-TYPE      5      6      6      1      1      4
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 12(9P21.3) MUTATED        3      2
  DEL PEAK 12(9P21.3) WILD-TYPE      3      4
D30V4, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                           3                             5
  CLUS_2                           1                             6
  CLUS_3                           1                             6
  CLUS_4                           2                             1
  CLUS_5                           3                             1
  CLUS_6                           0                             4
  CLUS_7                           3                             3
  CLUS_8                           2                             4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P21.3) MUTATED       17      1      3      2
  DEL PEAK 12(9P21.3) WILD-TYPE      7     13     13     21
D30V5, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                          17                             7
  CLUS_2                           1                            13
  CLUS_3                           3                            13
  CLUS_4                           2                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P21.3) MUTATED       15      4      2      2
  DEL PEAK 12(9P21.3) WILD-TYPE      8     19      5     22
D30V6, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                          15                             8
  CLUS_2                           4                            19
  CLUS_3                           2                             5
  CLUS_4                           2                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P21.3) MUTATED       11      9      3
  DEL PEAK 12(9P21.3) WILD-TYPE     18     15     22
D30V7, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                          11                            18
  CLUS_2                           9                            15
  CLUS_3                           3                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(9P21.3) MUTATED        5      7      0     10      1
  DEL PEAK 12(9P21.3) WILD-TYPE     11     20     11     10      3
D30V8, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                           5                            11
  CLUS_2                           7                            20
  CLUS_3                           0                            11
  CLUS_4                          10                            10
  CLUS_5                           1                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P21.3) MUTATED       10      5      3      4
  DEL PEAK 12(9P21.3) WILD-TYPE      6     14     13     22
D30V9, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                          10                             6
  CLUS_2                           5                            14
  CLUS_3                           3                            13
  CLUS_4                           4                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(9P21.3) MUTATED        1      6      2      8      4      1
  DEL PEAK 12(9P21.3) WILD-TYPE      5     18      9      6      7     10
D30V10, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           6                            18
  CLUS_3                           2                             9
  CLUS_4                           8                             6
  CLUS_5                           4                             7
  CLUS_6                           1                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK 13(10Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(10Q23.1) MUTATED        1      1      1      3      2      2
  DEL PEAK 13(10Q23.1) WILD-TYPE     18     17     12     15      9      4
                                vv
clus                             CLUS_7
  DEL PEAK 13(10Q23.1) MUTATED        0
  DEL PEAK 13(10Q23.1) WILD-TYPE      5
D31V1, multiclass
        clus
vv       DEL PEAK 13(10Q23.1) MUTATED DEL PEAK 13(10Q23.1) WILD-TYPE
  CLUS_1                            1                             18
  CLUS_2                            1                             17
  CLUS_3                            1                             12
  CLUS_4                            3                             15
  CLUS_5                            2                              9
  CLUS_6                            2                              4
  CLUS_7                            0                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(10Q23.1) MUTATED        1      1      2      1      1      1
  DEL PEAK 13(10Q23.1) WILD-TYPE     15     13      6     16      8     11
                                vv
clus                             CLUS_7
  DEL PEAK 13(10Q23.1) MUTATED        0
  DEL PEAK 13(10Q23.1) WILD-TYPE      2
D31V2, multiclass
        clus
vv       DEL PEAK 13(10Q23.1) MUTATED DEL PEAK 13(10Q23.1) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            1                             13
  CLUS_3                            2                              6
  CLUS_4                            1                             16
  CLUS_5                            1                              8
  CLUS_6                            1                             11
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q23.1) MUTATED        1      1      1      1
  DEL PEAK 13(10Q23.1) WILD-TYPE      9     10      9     13
D31V3, multiclass
        clus
vv       DEL PEAK 13(10Q23.1) MUTATED DEL PEAK 13(10Q23.1) WILD-TYPE
  CLUS_1                            1                              9
  CLUS_2                            1                             10
  CLUS_3                            1                              9
  CLUS_4                            1                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(10Q23.1) MUTATED        0      1      0      0      1      0
  DEL PEAK 13(10Q23.1) WILD-TYPE      8      6      7      3      3      4
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 13(10Q23.1) MUTATED        2      0
  DEL PEAK 13(10Q23.1) WILD-TYPE      4      6
D31V4, multiclass
        clus
vv       DEL PEAK 13(10Q23.1) MUTATED DEL PEAK 13(10Q23.1) WILD-TYPE
  CLUS_1                            0                              8
  CLUS_2                            1                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              3
  CLUS_5                            1                              3
  CLUS_6                            0                              4
  CLUS_7                            2                              4
  CLUS_8                            0                              6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q23.1) MUTATED        2      0      3      2
  DEL PEAK 13(10Q23.1) WILD-TYPE     22     14     13     21
D31V5, multiclass
        clus
vv       DEL PEAK 13(10Q23.1) MUTATED DEL PEAK 13(10Q23.1) WILD-TYPE
  CLUS_1                            2                             22
  CLUS_2                            0                             14
  CLUS_3                            3                             13
  CLUS_4                            2                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q23.1) MUTATED        2      2      0      3
  DEL PEAK 13(10Q23.1) WILD-TYPE     21     21      7     21
D31V6, multiclass
        clus
vv       DEL PEAK 13(10Q23.1) MUTATED DEL PEAK 13(10Q23.1) WILD-TYPE
  CLUS_1                            2                             21
  CLUS_2                            2                             21
  CLUS_3                            0                              7
  CLUS_4                            3                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(10Q23.1) MUTATED        3      1      3
  DEL PEAK 13(10Q23.1) WILD-TYPE     26     23     22
D31V7, multiclass
        clus
vv       DEL PEAK 13(10Q23.1) MUTATED DEL PEAK 13(10Q23.1) WILD-TYPE
  CLUS_1                            3                             26
  CLUS_2                            1                             23
  CLUS_3                            3                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(10Q23.1) MUTATED        1      4      0      2      0
  DEL PEAK 13(10Q23.1) WILD-TYPE     15     23     11     18      4
D31V8, multiclass
        clus
vv       DEL PEAK 13(10Q23.1) MUTATED DEL PEAK 13(10Q23.1) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            4                             23
  CLUS_3                            0                             11
  CLUS_4                            2                             18
  CLUS_5                            0                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q23.1) MUTATED        1      1      2      3
  DEL PEAK 13(10Q23.1) WILD-TYPE     15     18     14     23
D31V9, multiclass
        clus
vv       DEL PEAK 13(10Q23.1) MUTATED DEL PEAK 13(10Q23.1) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            1                             18
  CLUS_3                            2                             14
  CLUS_4                            3                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(10Q23.1) MUTATED        0      4      2      1      0      0
  DEL PEAK 13(10Q23.1) WILD-TYPE      6     20      9     13     11     11
D31V10, multiclass
        clus
vv       DEL PEAK 13(10Q23.1) MUTATED DEL PEAK 13(10Q23.1) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            4                             20
  CLUS_3                            2                              9
  CLUS_4                            1                             13
  CLUS_5                            0                             11
  CLUS_6                            0                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK 14(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(11P15.5) MUTATED        2      2      5      4      6      6
  DEL PEAK 14(11P15.5) WILD-TYPE     17     16      8     14      5      0
                                vv
clus                             CLUS_7
  DEL PEAK 14(11P15.5) MUTATED        1
  DEL PEAK 14(11P15.5) WILD-TYPE      4
D32V1, multiclass
        clus
vv       DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE
  CLUS_1                            2                             17
  CLUS_2                            2                             16
  CLUS_3                            5                              8
  CLUS_4                            4                             14
  CLUS_5                            6                              5
  CLUS_6                            6                              0
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(11P15.5) MUTATED        3      2      4      9      3      3
  DEL PEAK 14(11P15.5) WILD-TYPE     13     12      4      8      6      9
                                vv
clus                             CLUS_7
  DEL PEAK 14(11P15.5) MUTATED        0
  DEL PEAK 14(11P15.5) WILD-TYPE      2
D32V2, multiclass
        clus
vv       DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE
  CLUS_1                            3                             13
  CLUS_2                            2                             12
  CLUS_3                            4                              4
  CLUS_4                            9                              8
  CLUS_5                            3                              6
  CLUS_6                            3                              9
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11P15.5) MUTATED        2      5      3      2
  DEL PEAK 14(11P15.5) WILD-TYPE      8      6      7     12
D32V3, multiclass
        clus
vv       DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE
  CLUS_1                            2                              8
  CLUS_2                            5                              6
  CLUS_3                            3                              7
  CLUS_4                            2                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(11P15.5) MUTATED        1      2      1      0      1      2
  DEL PEAK 14(11P15.5) WILD-TYPE      7      5      6      3      3      2
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 14(11P15.5) MUTATED        2      3
  DEL PEAK 14(11P15.5) WILD-TYPE      4      3
D32V4, multiclass
        clus
vv       DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            2                              5
  CLUS_3                            1                              6
  CLUS_4                            0                              3
  CLUS_5                            1                              3
  CLUS_6                            2                              2
  CLUS_7                            2                              4
  CLUS_8                            3                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11P15.5) MUTATED        4      3      8      8
  DEL PEAK 14(11P15.5) WILD-TYPE     20     11      8     15
D32V5, multiclass
        clus
vv       DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            3                             11
  CLUS_3                            8                              8
  CLUS_4                            8                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11P15.5) MUTATED        4     11      0      8
  DEL PEAK 14(11P15.5) WILD-TYPE     19     12      7     16
D32V6, multiclass
        clus
vv       DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE
  CLUS_1                            4                             19
  CLUS_2                           11                             12
  CLUS_3                            0                              7
  CLUS_4                            8                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11P15.5) MUTATED        8      5     11
  DEL PEAK 14(11P15.5) WILD-TYPE     21     19     14
D32V7, multiclass
        clus
vv       DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE
  CLUS_1                            8                             21
  CLUS_2                            5                             19
  CLUS_3                           11                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(11P15.5) MUTATED        7      7      3      5      2
  DEL PEAK 14(11P15.5) WILD-TYPE      9     20      8     15      2
D32V8, multiclass
        clus
vv       DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE
  CLUS_1                            7                              9
  CLUS_2                            7                             20
  CLUS_3                            3                              8
  CLUS_4                            5                             15
  CLUS_5                            2                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11P15.5) MUTATED        3      5      5     10
  DEL PEAK 14(11P15.5) WILD-TYPE     13     14     11     16
D32V9, multiclass
        clus
vv       DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE
  CLUS_1                            3                             13
  CLUS_2                            5                             14
  CLUS_3                            5                             11
  CLUS_4                           10                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(11P15.5) MUTATED        1      6      4      4      2      6
  DEL PEAK 14(11P15.5) WILD-TYPE      5     18      7     10      9      5
D32V10, multiclass
        clus
vv       DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            6                             18
  CLUS_3                            4                              7
  CLUS_4                            4                             10
  CLUS_5                            2                              9
  CLUS_6                            6                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK 15(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(11Q14.1) MUTATED        4      1      3      4      6      5
  DEL PEAK 15(11Q14.1) WILD-TYPE     15     17     10     14      5      1
                                vv
clus                             CLUS_7
  DEL PEAK 15(11Q14.1) MUTATED        1
  DEL PEAK 15(11Q14.1) WILD-TYPE      4
D33V1, multiclass
        clus
vv       DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE
  CLUS_1                            4                             15
  CLUS_2                            1                             17
  CLUS_3                            3                             10
  CLUS_4                            4                             14
  CLUS_5                            6                              5
  CLUS_6                            5                              1
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(11Q14.1) MUTATED        1      3      4      9      3      1
  DEL PEAK 15(11Q14.1) WILD-TYPE     15     11      4      8      6     11
                                vv
clus                             CLUS_7
  DEL PEAK 15(11Q14.1) MUTATED        0
  DEL PEAK 15(11Q14.1) WILD-TYPE      2
D33V2, multiclass
        clus
vv       DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            3                             11
  CLUS_3                            4                              4
  CLUS_4                            9                              8
  CLUS_5                            3                              6
  CLUS_6                            1                             11
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11Q14.1) MUTATED        2      3      3      3
  DEL PEAK 15(11Q14.1) WILD-TYPE      8      8      7     11
D33V3, multiclass
        clus
vv       DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE
  CLUS_1                            2                              8
  CLUS_2                            3                              8
  CLUS_3                            3                              7
  CLUS_4                            3                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(11Q14.1) MUTATED        1      1      1      0      1      1
  DEL PEAK 15(11Q14.1) WILD-TYPE      7      6      6      3      3      3
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 15(11Q14.1) MUTATED        3      3
  DEL PEAK 15(11Q14.1) WILD-TYPE      3      3
D33V4, multiclass
        clus
vv       DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            1                              6
  CLUS_3                            1                              6
  CLUS_4                            0                              3
  CLUS_5                            1                              3
  CLUS_6                            1                              3
  CLUS_7                            3                              3
  CLUS_8                            3                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11Q14.1) MUTATED        5      2      7      7
  DEL PEAK 15(11Q14.1) WILD-TYPE     19     12      9     16
D33V5, multiclass
        clus
vv       DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE
  CLUS_1                            5                             19
  CLUS_2                            2                             12
  CLUS_3                            7                              9
  CLUS_4                            7                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11Q14.1) MUTATED        4      9      1      7
  DEL PEAK 15(11Q14.1) WILD-TYPE     19     14      6     17
D33V6, multiclass
        clus
vv       DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE
  CLUS_1                            4                             19
  CLUS_2                            9                             14
  CLUS_3                            1                              6
  CLUS_4                            7                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q14.1) MUTATED        8      4      9
  DEL PEAK 15(11Q14.1) WILD-TYPE     21     20     16
D33V7, multiclass
        clus
vv       DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE
  CLUS_1                            8                             21
  CLUS_2                            4                             20
  CLUS_3                            9                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(11Q14.1) MUTATED        4      6      2      7      2
  DEL PEAK 15(11Q14.1) WILD-TYPE     12     21      9     13      2
D33V8, multiclass
        clus
vv       DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE
  CLUS_1                            4                             12
  CLUS_2                            6                             21
  CLUS_3                            2                              9
  CLUS_4                            7                             13
  CLUS_5                            2                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11Q14.1) MUTATED        2      6      4      8
  DEL PEAK 15(11Q14.1) WILD-TYPE     14     13     12     18
D33V9, multiclass
        clus
vv       DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE
  CLUS_1                            2                             14
  CLUS_2                            6                             13
  CLUS_3                            4                             12
  CLUS_4                            8                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(11Q14.1) MUTATED        0      5      3      5      3      4
  DEL PEAK 15(11Q14.1) WILD-TYPE      6     19      8      9      8      7
D33V10, multiclass
        clus
vv       DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            5                             19
  CLUS_3                            3                              8
  CLUS_4                            5                              9
  CLUS_5                            3                              8
  CLUS_6                            4                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 16(12Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(12Q14.2) MUTATED        4      0      0      0      1      0
  DEL PEAK 16(12Q14.2) WILD-TYPE     15     18     13     18     10      6
                                vv
clus                             CLUS_7
  DEL PEAK 16(12Q14.2) MUTATED        0
  DEL PEAK 16(12Q14.2) WILD-TYPE      5
D34V1, multiclass
        clus
vv       DEL PEAK 16(12Q14.2) MUTATED DEL PEAK 16(12Q14.2) WILD-TYPE
  CLUS_1                            4                             15
  CLUS_2                            0                             18
  CLUS_3                            0                             13
  CLUS_4                            0                             18
  CLUS_5                            1                             10
  CLUS_6                            0                              6
  CLUS_7                            0                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(12Q14.2) MUTATED        1      3      1      0      0      0
  DEL PEAK 16(12Q14.2) WILD-TYPE     15     11      7     17      9     12
                                vv
clus                             CLUS_7
  DEL PEAK 16(12Q14.2) MUTATED        0
  DEL PEAK 16(12Q14.2) WILD-TYPE      2
D34V2, multiclass
        clus
vv       DEL PEAK 16(12Q14.2) MUTATED DEL PEAK 16(12Q14.2) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            3                             11
  CLUS_3                            1                              7
  CLUS_4                            0                             17
  CLUS_5                            0                              9
  CLUS_6                            0                             12
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(12Q14.2) MUTATED        1      1      0      0
  DEL PEAK 16(12Q14.2) WILD-TYPE      9     10     10     14
D34V3, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 16(12Q14.2) MUTATED"
clus
  DEL PEAK 16(12Q14.2) MUTATED DEL PEAK 16(12Q14.2) WILD-TYPE 
                             2                             43 
                    TCGA-OR-A5J2                     TCGA-OR-A5J3 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5J6                     TCGA-OR-A5J7 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5J8                     TCGA-OR-A5J9 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5JA                     TCGA-OR-A5JP 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5JR                     TCGA-OR-A5JS 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5JT                     TCGA-OR-A5JV 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5JW                     TCGA-OR-A5JY 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5JZ                     TCGA-OR-A5K0 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5K1                     TCGA-OR-A5K3 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5K4                     TCGA-OR-A5K5 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5K6                     TCGA-OR-A5K8 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5KO                     TCGA-OR-A5KU 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5KW                     TCGA-OR-A5KX 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5KY                     TCGA-OR-A5KZ 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LD                     TCGA-OR-A5LG 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LH                     TCGA-OR-A5LJ 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LK                     TCGA-OR-A5LM 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LN                     TCGA-OR-A5LO 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LP                     TCGA-OR-A5LS 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LT                     TCGA-OU-A5PI 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-PA-A5YG                     TCGA-PK-A5H9 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-PK-A5HA 
"DEL PEAK 16(12Q14.2) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(12Q14.2) MUTATED        0      0      0      0      1      0
  DEL PEAK 16(12Q14.2) WILD-TYPE      8      7      7      3      3      4
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 16(12Q14.2) MUTATED        0      1
  DEL PEAK 16(12Q14.2) WILD-TYPE      6      5
D34V4, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 16(12Q14.2) MUTATED"
clus
  DEL PEAK 16(12Q14.2) MUTATED DEL PEAK 16(12Q14.2) WILD-TYPE 
                             2                             43 
                    TCGA-OR-A5J2                     TCGA-OR-A5J3 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5J6                     TCGA-OR-A5J7 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5J8                     TCGA-OR-A5J9 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5JA                     TCGA-OR-A5JP 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5JR                     TCGA-OR-A5JS 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5JT                     TCGA-OR-A5JV 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5JW                     TCGA-OR-A5JY 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5JZ                     TCGA-OR-A5K0 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5K1                     TCGA-OR-A5K3 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5K4                     TCGA-OR-A5K5 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5K6                     TCGA-OR-A5K8 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5KO                     TCGA-OR-A5KU 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5KW                     TCGA-OR-A5KX 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5KY                     TCGA-OR-A5KZ 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LD                     TCGA-OR-A5LG 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LH                     TCGA-OR-A5LJ 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LK                     TCGA-OR-A5LM 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LN                     TCGA-OR-A5LO 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LP                     TCGA-OR-A5LS 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LT                     TCGA-OU-A5PI 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-PA-A5YG                     TCGA-PK-A5H9 
"DEL PEAK 16(12Q14.2) WILD-TYPE" "DEL PEAK 16(12Q14.2) WILD-TYPE" 
                    TCGA-PK-A5HA 
"DEL PEAK 16(12Q14.2) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(12Q14.2) MUTATED        4      0      0      1
  DEL PEAK 16(12Q14.2) WILD-TYPE     20     14     16     22
D34V5, multiclass
        clus
vv       DEL PEAK 16(12Q14.2) MUTATED DEL PEAK 16(12Q14.2) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            0                             14
  CLUS_3                            0                             16
  CLUS_4                            1                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(12Q14.2) MUTATED        2      0      3      0
  DEL PEAK 16(12Q14.2) WILD-TYPE     21     23      4     24
D34V6, multiclass
        clus
vv       DEL PEAK 16(12Q14.2) MUTATED DEL PEAK 16(12Q14.2) WILD-TYPE
  CLUS_1                            2                             21
  CLUS_2                            0                             23
  CLUS_3                            3                              4
  CLUS_4                            0                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(12Q14.2) MUTATED        1      4      0
  DEL PEAK 16(12Q14.2) WILD-TYPE     28     20     25
D34V7, multiclass
        clus
vv       DEL PEAK 16(12Q14.2) MUTATED DEL PEAK 16(12Q14.2) WILD-TYPE
  CLUS_1                            1                             28
  CLUS_2                            4                             20
  CLUS_3                            0                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(12Q14.2) MUTATED        0      2      0      2      1
  DEL PEAK 16(12Q14.2) WILD-TYPE     16     25     11     18      3
D34V8, multiclass
        clus
vv       DEL PEAK 16(12Q14.2) MUTATED DEL PEAK 16(12Q14.2) WILD-TYPE
  CLUS_1                            0                             16
  CLUS_2                            2                             25
  CLUS_3                            0                             11
  CLUS_4                            2                             18
  CLUS_5                            1                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(12Q14.2) MUTATED        0      4      1      0
  DEL PEAK 16(12Q14.2) WILD-TYPE     16     15     15     26
D34V9, multiclass
        clus
vv       DEL PEAK 16(12Q14.2) MUTATED DEL PEAK 16(12Q14.2) WILD-TYPE
  CLUS_1                            0                             16
  CLUS_2                            4                             15
  CLUS_3                            1                             15
  CLUS_4                            0                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(12Q14.2) MUTATED        0      0      0      1      4      0
  DEL PEAK 16(12Q14.2) WILD-TYPE      6     24     11     13      7     11
D34V10, multiclass
        clus
vv       DEL PEAK 16(12Q14.2) MUTATED DEL PEAK 16(12Q14.2) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            0                             24
  CLUS_3                            0                             11
  CLUS_4                            1                             13
  CLUS_5                            4                              7
  CLUS_6                            0                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 17(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(13Q14.2) MUTATED        7      2      6     11      9      5
  DEL PEAK 17(13Q14.2) WILD-TYPE     12     16      7      7      2      1
                                vv
clus                             CLUS_7
  DEL PEAK 17(13Q14.2) MUTATED        2
  DEL PEAK 17(13Q14.2) WILD-TYPE      3
D35V1, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                            7                             12
  CLUS_2                            2                             16
  CLUS_3                            6                              7
  CLUS_4                           11                              7
  CLUS_5                            9                              2
  CLUS_6                            5                              1
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(13Q14.2) MUTATED       11      5      3      9      3      1
  DEL PEAK 17(13Q14.2) WILD-TYPE      5      9      5      8      6     11
                                vv
clus                             CLUS_7
  DEL PEAK 17(13Q14.2) MUTATED        1
  DEL PEAK 17(13Q14.2) WILD-TYPE      1
D35V2, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                           11                              5
  CLUS_2                            5                              9
  CLUS_3                            3                              5
  CLUS_4                            9                              8
  CLUS_5                            3                              6
  CLUS_6                            1                             11
  CLUS_7                            1                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(13Q14.2) MUTATED        5      4      3      8
  DEL PEAK 17(13Q14.2) WILD-TYPE      5      7      7      6
D35V3, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                            5                              5
  CLUS_2                            4                              7
  CLUS_3                            3                              7
  CLUS_4                            8                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(13Q14.2) MUTATED        4      3      2      2      3      1
  DEL PEAK 17(13Q14.2) WILD-TYPE      4      4      5      1      1      3
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 17(13Q14.2) MUTATED        2      3
  DEL PEAK 17(13Q14.2) WILD-TYPE      4      3
D35V4, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                            3                              4
  CLUS_3                            2                              5
  CLUS_4                            2                              1
  CLUS_5                            3                              1
  CLUS_6                            1                              3
  CLUS_7                            2                              4
  CLUS_8                            3                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(13Q14.2) MUTATED       13      3      7      9
  DEL PEAK 17(13Q14.2) WILD-TYPE     11     11      9     14
D35V5, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                           13                             11
  CLUS_2                            3                             11
  CLUS_3                            7                              9
  CLUS_4                            9                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(13Q14.2) MUTATED       12     10      2      8
  DEL PEAK 17(13Q14.2) WILD-TYPE     11     13      5     16
D35V6, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                           12                             11
  CLUS_2                           10                             13
  CLUS_3                            2                              5
  CLUS_4                            8                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(13Q14.2) MUTATED       13     10     10
  DEL PEAK 17(13Q14.2) WILD-TYPE     16     14     15
D35V7, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                           13                             16
  CLUS_2                           10                             14
  CLUS_3                           10                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(13Q14.2) MUTATED        5     12      3     11      2
  DEL PEAK 17(13Q14.2) WILD-TYPE     11     15      8      9      2
D35V8, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                            5                             11
  CLUS_2                           12                             15
  CLUS_3                            3                              8
  CLUS_4                           11                              9
  CLUS_5                            2                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(13Q14.2) MUTATED        9      8      7      9
  DEL PEAK 17(13Q14.2) WILD-TYPE      7     11      9     17
D35V9, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                            9                              7
  CLUS_2                            8                             11
  CLUS_3                            7                              9
  CLUS_4                            9                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(13Q14.2) MUTATED        2      9      4     10      4      4
  DEL PEAK 17(13Q14.2) WILD-TYPE      4     15      7      4      7      7
D35V10, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            9                             15
  CLUS_3                            4                              7
  CLUS_4                           10                              4
  CLUS_5                            4                              7
  CLUS_6                            4                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 18(14Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(14Q21.2) MUTATED        5      1      2      4      3      5
  DEL PEAK 18(14Q21.2) WILD-TYPE     14     17     11     14      8      1
                                vv
clus                             CLUS_7
  DEL PEAK 18(14Q21.2) MUTATED        0
  DEL PEAK 18(14Q21.2) WILD-TYPE      5
D36V1, multiclass
        clus
vv       DEL PEAK 18(14Q21.2) MUTATED DEL PEAK 18(14Q21.2) WILD-TYPE
  CLUS_1                            5                             14
  CLUS_2                            1                             17
  CLUS_3                            2                             11
  CLUS_4                            4                             14
  CLUS_5                            3                              8
  CLUS_6                            5                              1
  CLUS_7                            0                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(14Q21.2) MUTATED        2      5      1      3      3      2
  DEL PEAK 18(14Q21.2) WILD-TYPE     14      9      7     14      6     10
                                vv
clus                             CLUS_7
  DEL PEAK 18(14Q21.2) MUTATED        1
  DEL PEAK 18(14Q21.2) WILD-TYPE      1
D36V2, multiclass
        clus
vv       DEL PEAK 18(14Q21.2) MUTATED DEL PEAK 18(14Q21.2) WILD-TYPE
  CLUS_1                            2                             14
  CLUS_2                            5                              9
  CLUS_3                            1                              7
  CLUS_4                            3                             14
  CLUS_5                            3                              6
  CLUS_6                            2                             10
  CLUS_7                            1                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(14Q21.2) MUTATED        2      1      4      4
  DEL PEAK 18(14Q21.2) WILD-TYPE      8     10      6     10
D36V3, multiclass
        clus
vv       DEL PEAK 18(14Q21.2) MUTATED DEL PEAK 18(14Q21.2) WILD-TYPE
  CLUS_1                            2                              8
  CLUS_2                            1                             10
  CLUS_3                            4                              6
  CLUS_4                            4                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(14Q21.2) MUTATED        2      1      2      1      2      2
  DEL PEAK 18(14Q21.2) WILD-TYPE      6      6      5      2      2      2
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 18(14Q21.2) MUTATED        1      0
  DEL PEAK 18(14Q21.2) WILD-TYPE      5      6
D36V4, multiclass
        clus
vv       DEL PEAK 18(14Q21.2) MUTATED DEL PEAK 18(14Q21.2) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            1                              6
  CLUS_3                            2                              5
  CLUS_4                            1                              2
  CLUS_5                            2                              2
  CLUS_6                            2                              2
  CLUS_7                            1                              5
  CLUS_8                            0                              6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(14Q21.2) MUTATED        5      1      3      8
  DEL PEAK 18(14Q21.2) WILD-TYPE     19     13     13     15
D36V5, multiclass
        clus
vv       DEL PEAK 18(14Q21.2) MUTATED DEL PEAK 18(14Q21.2) WILD-TYPE
  CLUS_1                            5                             19
  CLUS_2                            1                             13
  CLUS_3                            3                             13
  CLUS_4                            8                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(14Q21.2) MUTATED        3      4      3      7
  DEL PEAK 18(14Q21.2) WILD-TYPE     20     19      4     17
D36V6, multiclass
        clus
vv       DEL PEAK 18(14Q21.2) MUTATED DEL PEAK 18(14Q21.2) WILD-TYPE
  CLUS_1                            3                             20
  CLUS_2                            4                             19
  CLUS_3                            3                              4
  CLUS_4                            7                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(14Q21.2) MUTATED        6      3      8
  DEL PEAK 18(14Q21.2) WILD-TYPE     23     21     17
D36V7, multiclass
        clus
vv       DEL PEAK 18(14Q21.2) MUTATED DEL PEAK 18(14Q21.2) WILD-TYPE
  CLUS_1                            6                             23
  CLUS_2                            3                             21
  CLUS_3                            8                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(14Q21.2) MUTATED        3      6      4      4      0
  DEL PEAK 18(14Q21.2) WILD-TYPE     13     21      7     16      4
D36V8, multiclass
        clus
vv       DEL PEAK 18(14Q21.2) MUTATED DEL PEAK 18(14Q21.2) WILD-TYPE
  CLUS_1                            3                             13
  CLUS_2                            6                             21
  CLUS_3                            4                              7
  CLUS_4                            4                             16
  CLUS_5                            0                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(14Q21.2) MUTATED        2      3      4      8
  DEL PEAK 18(14Q21.2) WILD-TYPE     14     16     12     18
D36V9, multiclass
        clus
vv       DEL PEAK 18(14Q21.2) MUTATED DEL PEAK 18(14Q21.2) WILD-TYPE
  CLUS_1                            2                             14
  CLUS_2                            3                             16
  CLUS_3                            4                             12
  CLUS_4                            8                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(14Q21.2) MUTATED        1      4      3      3      2      4
  DEL PEAK 18(14Q21.2) WILD-TYPE      5     20      8     11      9      7
D36V10, multiclass
        clus
vv       DEL PEAK 18(14Q21.2) MUTATED DEL PEAK 18(14Q21.2) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            4                             20
  CLUS_3                            3                              8
  CLUS_4                            3                             11
  CLUS_5                            2                              9
  CLUS_6                            4                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 19(15Q15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(15Q15.1) MUTATED        2      1      3     11      3      5
  DEL PEAK 19(15Q15.1) WILD-TYPE     17     17     10      7      8      1
                                vv
clus                             CLUS_7
  DEL PEAK 19(15Q15.1) MUTATED        0
  DEL PEAK 19(15Q15.1) WILD-TYPE      5
D37V1, multiclass
        clus
vv       DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  CLUS_1                            2                             17
  CLUS_2                            1                             17
  CLUS_3                            3                             10
  CLUS_4                           11                              7
  CLUS_5                            3                              8
  CLUS_6                            5                              1
  CLUS_7                            0                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(15Q15.1) MUTATED        8      3      1      4      2      3
  DEL PEAK 19(15Q15.1) WILD-TYPE      8     11      7     13      7      9
                                vv
clus                             CLUS_7
  DEL PEAK 19(15Q15.1) MUTATED        0
  DEL PEAK 19(15Q15.1) WILD-TYPE      2
D37V2, multiclass
        clus
vv       DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  CLUS_1                            8                              8
  CLUS_2                            3                             11
  CLUS_3                            1                              7
  CLUS_4                            4                             13
  CLUS_5                            2                              7
  CLUS_6                            3                              9
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(15Q15.1) MUTATED        3      2      2      4
  DEL PEAK 19(15Q15.1) WILD-TYPE      7      9      8     10
D37V3, multiclass
        clus
vv       DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  CLUS_1                            3                              7
  CLUS_2                            2                              9
  CLUS_3                            2                              8
  CLUS_4                            4                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(15Q15.1) MUTATED        2      1      1      3      1      1
  DEL PEAK 19(15Q15.1) WILD-TYPE      6      6      6      0      3      3
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 19(15Q15.1) MUTATED        1      1
  DEL PEAK 19(15Q15.1) WILD-TYPE      5      5
D37V4, multiclass
        clus
vv       DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            1                              6
  CLUS_3                            1                              6
  CLUS_4                            3                              0
  CLUS_5                            1                              3
  CLUS_6                            1                              3
  CLUS_7                            1                              5
  CLUS_8                            1                              5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(15Q15.1) MUTATED       11      3      1      6
  DEL PEAK 19(15Q15.1) WILD-TYPE     13     11     15     17
D37V5, multiclass
        clus
vv       DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  CLUS_1                           11                             13
  CLUS_2                            3                             11
  CLUS_3                            1                             15
  CLUS_4                            6                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(15Q15.1) MUTATED        9      3      2      7
  DEL PEAK 19(15Q15.1) WILD-TYPE     14     20      5     17
D37V6, multiclass
        clus
vv       DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  CLUS_1                            9                             14
  CLUS_2                            3                             20
  CLUS_3                            2                              5
  CLUS_4                            7                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(15Q15.1) MUTATED        7      6      8
  DEL PEAK 19(15Q15.1) WILD-TYPE     22     18     17
D37V7, multiclass
        clus
vv       DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  CLUS_1                            7                             22
  CLUS_2                            6                             18
  CLUS_3                            8                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(15Q15.1) MUTATED        1      7      2     10      1
  DEL PEAK 19(15Q15.1) WILD-TYPE     15     20      9     10      3
D37V8, multiclass
        clus
vv       DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            7                             20
  CLUS_3                            2                              9
  CLUS_4                           10                             10
  CLUS_5                            1                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(15Q15.1) MUTATED        6      5      2      8
  DEL PEAK 19(15Q15.1) WILD-TYPE     10     14     14     18
D37V9, multiclass
        clus
vv       DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  CLUS_1                            6                             10
  CLUS_2                            5                             14
  CLUS_3                            2                             14
  CLUS_4                            8                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(15Q15.1) MUTATED        0      5      0      9      3      4
  DEL PEAK 19(15Q15.1) WILD-TYPE      6     19     11      5      8      7
D37V10, multiclass
        clus
vv       DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            5                             19
  CLUS_3                            0                             11
  CLUS_4                            9                              5
  CLUS_5                            3                              8
  CLUS_6                            4                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 20(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(16P13.3) MUTATED        3      0      1      3      0      0
  DEL PEAK 20(16P13.3) WILD-TYPE     16     18     12     15     11      6
                                vv
clus                             CLUS_7
  DEL PEAK 20(16P13.3) MUTATED        1
  DEL PEAK 20(16P13.3) WILD-TYPE      4
D38V1, multiclass
        clus
vv       DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE
  CLUS_1                            3                             16
  CLUS_2                            0                             18
  CLUS_3                            1                             12
  CLUS_4                            3                             15
  CLUS_5                            0                             11
  CLUS_6                            0                              6
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(16P13.3) MUTATED        2      3      1      2      0      0
  DEL PEAK 20(16P13.3) WILD-TYPE     14     11      7     15      9     12
                                vv
clus                             CLUS_7
  DEL PEAK 20(16P13.3) MUTATED        0
  DEL PEAK 20(16P13.3) WILD-TYPE      2
D38V2, multiclass
        clus
vv       DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE
  CLUS_1                            2                             14
  CLUS_2                            3                             11
  CLUS_3                            1                              7
  CLUS_4                            2                             15
  CLUS_5                            0                              9
  CLUS_6                            0                             12
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16P13.3) MUTATED        2      1      1      2
  DEL PEAK 20(16P13.3) WILD-TYPE      8     10      9     12
D38V3, multiclass
        clus
vv       DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE
  CLUS_1                            2                              8
  CLUS_2                            1                             10
  CLUS_3                            1                              9
  CLUS_4                            2                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(16P13.3) MUTATED        1      0      1      1      2      0
  DEL PEAK 20(16P13.3) WILD-TYPE      7      7      6      2      2      4
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 20(16P13.3) MUTATED        0      1
  DEL PEAK 20(16P13.3) WILD-TYPE      6      5
D38V4, multiclass
        clus
vv       DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            0                              7
  CLUS_3                            1                              6
  CLUS_4                            1                              2
  CLUS_5                            2                              2
  CLUS_6                            0                              4
  CLUS_7                            0                              6
  CLUS_8                            1                              5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16P13.3) MUTATED        5      2      0      1
  DEL PEAK 20(16P13.3) WILD-TYPE     19     12     16     22
D38V5, multiclass
        clus
vv       DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE
  CLUS_1                            5                             19
  CLUS_2                            2                             12
  CLUS_3                            0                             16
  CLUS_4                            1                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16P13.3) MUTATED        3      2      3      0
  DEL PEAK 20(16P13.3) WILD-TYPE     20     21      4     24
D38V6, multiclass
        clus
vv       DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE
  CLUS_1                            3                             20
  CLUS_2                            2                             21
  CLUS_3                            3                              4
  CLUS_4                            0                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(16P13.3) MUTATED        4      4      0
  DEL PEAK 20(16P13.3) WILD-TYPE     25     20     25
D38V7, multiclass
        clus
vv       DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE
  CLUS_1                            4                             25
  CLUS_2                            4                             20
  CLUS_3                            0                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(16P13.3) MUTATED        1      3      1      2      1
  DEL PEAK 20(16P13.3) WILD-TYPE     15     24     10     18      3
D38V8, multiclass
        clus
vv       DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            3                             24
  CLUS_3                            1                             10
  CLUS_4                            2                             18
  CLUS_5                            1                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16P13.3) MUTATED        1      4      2      1
  DEL PEAK 20(16P13.3) WILD-TYPE     15     15     14     25
D38V9, multiclass
        clus
vv       DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            4                             15
  CLUS_3                            2                             14
  CLUS_4                            1                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(16P13.3) MUTATED        0      1      2      2      3      0
  DEL PEAK 20(16P13.3) WILD-TYPE      6     23      9     12      8     11
D38V10, multiclass
        clus
vv       DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            1                             23
  CLUS_3                            2                              9
  CLUS_4                            2                             12
  CLUS_5                            3                              8
  CLUS_6                            0                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 21(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(16Q23.1) MUTATED        5      0      0      5      0      0
  DEL PEAK 21(16Q23.1) WILD-TYPE     14     18     13     13     11      6
                                vv
clus                             CLUS_7
  DEL PEAK 21(16Q23.1) MUTATED        1
  DEL PEAK 21(16Q23.1) WILD-TYPE      4
D39V1, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            5                             14
  CLUS_2                            0                             18
  CLUS_3                            0                             13
  CLUS_4                            5                             13
  CLUS_5                            0                             11
  CLUS_6                            0                              6
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(16Q23.1) MUTATED        3      2      2      1      0      0
  DEL PEAK 21(16Q23.1) WILD-TYPE     13     12      6     16      9     12
                                vv
clus                             CLUS_7
  DEL PEAK 21(16Q23.1) MUTATED        0
  DEL PEAK 21(16Q23.1) WILD-TYPE      2
D39V2, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            3                             13
  CLUS_2                            2                             12
  CLUS_3                            2                              6
  CLUS_4                            1                             16
  CLUS_5                            0                              9
  CLUS_6                            0                             12
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(16Q23.1) MUTATED        1      2      0      3
  DEL PEAK 21(16Q23.1) WILD-TYPE      9      9     10     11
D39V3, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            1                              9
  CLUS_2                            2                              9
  CLUS_3                            0                             10
  CLUS_4                            3                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(16Q23.1) MUTATED        2      0      0      1      1      0
  DEL PEAK 21(16Q23.1) WILD-TYPE      6      7      7      2      3      4
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 21(16Q23.1) MUTATED        0      2
  DEL PEAK 21(16Q23.1) WILD-TYPE      6      4
D39V4, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            0                              7
  CLUS_3                            0                              7
  CLUS_4                            1                              2
  CLUS_5                            1                              3
  CLUS_6                            0                              4
  CLUS_7                            0                              6
  CLUS_8                            2                              4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(16Q23.1) MUTATED        6      1      0      1
  DEL PEAK 21(16Q23.1) WILD-TYPE     18     13     16     22
D39V5, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            6                             18
  CLUS_2                            1                             13
  CLUS_3                            0                             16
  CLUS_4                            1                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(16Q23.1) MUTATED        5      1      2      0
  DEL PEAK 21(16Q23.1) WILD-TYPE     18     22      5     24
D39V6, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            5                             18
  CLUS_2                            1                             22
  CLUS_3                            2                              5
  CLUS_4                            0                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(16Q23.1) MUTATED        3      5      0
  DEL PEAK 21(16Q23.1) WILD-TYPE     26     19     25
D39V7, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            3                             26
  CLUS_2                            5                             19
  CLUS_3                            0                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(16Q23.1) MUTATED        1      3      0      2      2
  DEL PEAK 21(16Q23.1) WILD-TYPE     15     24     11     18      2
D39V8, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            3                             24
  CLUS_3                            0                             11
  CLUS_4                            2                             18
  CLUS_5                            2                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(16Q23.1) MUTATED        2      4      1      1
  DEL PEAK 21(16Q23.1) WILD-TYPE     14     15     15     25
D39V9, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            2                             14
  CLUS_2                            4                             15
  CLUS_3                            1                             15
  CLUS_4                            1                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(16Q23.1) MUTATED        0      1      1      2      4      0
  DEL PEAK 21(16Q23.1) WILD-TYPE      6     23     10     12      7     11
D39V10, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            1                             23
  CLUS_3                            1                             10
  CLUS_4                            2                             12
  CLUS_5                            4                              7
  CLUS_6                            0                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 22(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(17Q11.2) MUTATED        4      1      4      7      7      0
  DEL PEAK 22(17Q11.2) WILD-TYPE     15     17      9     11      4      6
                                vv
clus                             CLUS_7
  DEL PEAK 22(17Q11.2) MUTATED        1
  DEL PEAK 22(17Q11.2) WILD-TYPE      4
D40V1, multiclass
        clus
vv       DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE
  CLUS_1                            4                             15
  CLUS_2                            1                             17
  CLUS_3                            4                              9
  CLUS_4                            7                             11
  CLUS_5                            7                              4
  CLUS_6                            0                              6
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(17Q11.2) MUTATED        6      4      3      9      0      1
  DEL PEAK 22(17Q11.2) WILD-TYPE     10     10      5      8      9     11
                                vv
clus                             CLUS_7
  DEL PEAK 22(17Q11.2) MUTATED        0
  DEL PEAK 22(17Q11.2) WILD-TYPE      2
D40V2, multiclass
        clus
vv       DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE
  CLUS_1                            6                             10
  CLUS_2                            4                             10
  CLUS_3                            3                              5
  CLUS_4                            9                              8
  CLUS_5                            0                              9
  CLUS_6                            1                             11
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(17Q11.2) MUTATED        2      3      2      6
  DEL PEAK 22(17Q11.2) WILD-TYPE      8      8      8      8
D40V3, multiclass
        clus
vv       DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE
  CLUS_1                            2                              8
  CLUS_2                            3                              8
  CLUS_3                            2                              8
  CLUS_4                            6                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(17Q11.2) MUTATED        2      2      1      2      1      0
  DEL PEAK 22(17Q11.2) WILD-TYPE      6      5      6      1      3      4
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 22(17Q11.2) MUTATED        3      2
  DEL PEAK 22(17Q11.2) WILD-TYPE      3      4
D40V4, multiclass
        clus
vv       DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            2                              5
  CLUS_3                            1                              6
  CLUS_4                            2                              1
  CLUS_5                            1                              3
  CLUS_6                            0                              4
  CLUS_7                            3                              3
  CLUS_8                            2                              4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(17Q11.2) MUTATED       10      3      7      3
  DEL PEAK 22(17Q11.2) WILD-TYPE     14     11      9     20
D40V5, multiclass
        clus
vv       DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE
  CLUS_1                           10                             14
  CLUS_2                            3                             11
  CLUS_3                            7                              9
  CLUS_4                            3                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(17Q11.2) MUTATED        8     10      2      3
  DEL PEAK 22(17Q11.2) WILD-TYPE     15     13      5     21
D40V6, multiclass
        clus
vv       DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE
  CLUS_1                            8                             15
  CLUS_2                           10                             13
  CLUS_3                            2                              5
  CLUS_4                            3                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(17Q11.2) MUTATED       12      6      5
  DEL PEAK 22(17Q11.2) WILD-TYPE     17     18     20
D40V7, multiclass
        clus
vv       DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE
  CLUS_1                           12                             17
  CLUS_2                            6                             18
  CLUS_3                            5                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(17Q11.2) MUTATED        4      7      0     11      1
  DEL PEAK 22(17Q11.2) WILD-TYPE     12     20     11      9      3
D40V8, multiclass
        clus
vv       DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE
  CLUS_1                            4                             12
  CLUS_2                            7                             20
  CLUS_3                            0                             11
  CLUS_4                           11                              9
  CLUS_5                            1                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(17Q11.2) MUTATED        5      8      5      4
  DEL PEAK 22(17Q11.2) WILD-TYPE     11     11     11     22
D40V9, multiclass
        clus
vv       DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE
  CLUS_1                            5                             11
  CLUS_2                            8                             11
  CLUS_3                            5                             11
  CLUS_4                            4                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(17Q11.2) MUTATED        0      5      3     10      3      1
  DEL PEAK 22(17Q11.2) WILD-TYPE      6     19      8      4      8     10
D40V10, multiclass
        clus
vv       DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            5                             19
  CLUS_3                            3                              8
  CLUS_4                           10                              4
  CLUS_5                            3                              8
  CLUS_6                            1                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 23(17Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(17Q21.2) MUTATED        3      1      5     10      6      0
  DEL PEAK 23(17Q21.2) WILD-TYPE     16     17      8      8      5      6
                                vv
clus                             CLUS_7
  DEL PEAK 23(17Q21.2) MUTATED        1
  DEL PEAK 23(17Q21.2) WILD-TYPE      4
D41V1, multiclass
        clus
vv       DEL PEAK 23(17Q21.2) MUTATED DEL PEAK 23(17Q21.2) WILD-TYPE
  CLUS_1                            3                             16
  CLUS_2                            1                             17
  CLUS_3                            5                              8
  CLUS_4                           10                              8
  CLUS_5                            6                              5
  CLUS_6                            0                              6
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(17Q21.2) MUTATED        7      3      4     10      0      1
  DEL PEAK 23(17Q21.2) WILD-TYPE      9     11      4      7      9     11
                                vv
clus                             CLUS_7
  DEL PEAK 23(17Q21.2) MUTATED        0
  DEL PEAK 23(17Q21.2) WILD-TYPE      2
D41V2, multiclass
        clus
vv       DEL PEAK 23(17Q21.2) MUTATED DEL PEAK 23(17Q21.2) WILD-TYPE
  CLUS_1                            7                              9
  CLUS_2                            3                             11
  CLUS_3                            4                              4
  CLUS_4                           10                              7
  CLUS_5                            0                              9
  CLUS_6                            1                             11
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(17Q21.2) MUTATED        2      4      2      7
  DEL PEAK 23(17Q21.2) WILD-TYPE      8      7      8      7
D41V3, multiclass
        clus
vv       DEL PEAK 23(17Q21.2) MUTATED DEL PEAK 23(17Q21.2) WILD-TYPE
  CLUS_1                            2                              8
  CLUS_2                            4                              7
  CLUS_3                            2                              8
  CLUS_4                            7                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(17Q21.2) MUTATED        3      2      1      2      1      0
  DEL PEAK 23(17Q21.2) WILD-TYPE      5      5      6      1      3      4
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 23(17Q21.2) MUTATED        3      3
  DEL PEAK 23(17Q21.2) WILD-TYPE      3      3
D41V4, multiclass
        clus
vv       DEL PEAK 23(17Q21.2) MUTATED DEL PEAK 23(17Q21.2) WILD-TYPE
  CLUS_1                            3                              5
  CLUS_2                            2                              5
  CLUS_3                            1                              6
  CLUS_4                            2                              1
  CLUS_5                            1                              3
  CLUS_6                            0                              4
  CLUS_7                            3                              3
  CLUS_8                            3                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(17Q21.2) MUTATED       10      4      7      3
  DEL PEAK 23(17Q21.2) WILD-TYPE     14     10      9     20
D41V5, multiclass
        clus
vv       DEL PEAK 23(17Q21.2) MUTATED DEL PEAK 23(17Q21.2) WILD-TYPE
  CLUS_1                           10                             14
  CLUS_2                            4                             10
  CLUS_3                            7                              9
  CLUS_4                            3                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(17Q21.2) MUTATED        9     11      1      3
  DEL PEAK 23(17Q21.2) WILD-TYPE     14     12      6     21
D41V6, multiclass
        clus
vv       DEL PEAK 23(17Q21.2) MUTATED DEL PEAK 23(17Q21.2) WILD-TYPE
  CLUS_1                            9                             14
  CLUS_2                           11                             12
  CLUS_3                            1                              6
  CLUS_4                            3                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(17Q21.2) MUTATED       14      6      5
  DEL PEAK 23(17Q21.2) WILD-TYPE     15     18     20
D41V7, multiclass
        clus
vv       DEL PEAK 23(17Q21.2) MUTATED DEL PEAK 23(17Q21.2) WILD-TYPE
  CLUS_1                           14                             15
  CLUS_2                            6                             18
  CLUS_3                            5                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(17Q21.2) MUTATED        7      6      0     11      1
  DEL PEAK 23(17Q21.2) WILD-TYPE      9     21     11      9      3
D41V8, multiclass
        clus
vv       DEL PEAK 23(17Q21.2) MUTATED DEL PEAK 23(17Q21.2) WILD-TYPE
  CLUS_1                            7                              9
  CLUS_2                            6                             21
  CLUS_3                            0                             11
  CLUS_4                           11                              9
  CLUS_5                            1                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(17Q21.2) MUTATED        6      7      6      5
  DEL PEAK 23(17Q21.2) WILD-TYPE     10     12     10     21
D41V9, multiclass
        clus
vv       DEL PEAK 23(17Q21.2) MUTATED DEL PEAK 23(17Q21.2) WILD-TYPE
  CLUS_1                            6                             10
  CLUS_2                            7                             12
  CLUS_3                            6                             10
  CLUS_4                            5                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(17Q21.2) MUTATED        2      5      4     10      2      1
  DEL PEAK 23(17Q21.2) WILD-TYPE      4     19      7      4      9     10
D41V10, multiclass
        clus
vv       DEL PEAK 23(17Q21.2) MUTATED DEL PEAK 23(17Q21.2) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            5                             19
  CLUS_3                            4                              7
  CLUS_4                           10                              4
  CLUS_5                            2                              9
  CLUS_6                            1                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 24(17Q24.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(17Q24.2) MUTATED        4      1      5      6      6      0
  DEL PEAK 24(17Q24.2) WILD-TYPE     15     17      8     12      5      6
                                vv
clus                             CLUS_7
  DEL PEAK 24(17Q24.2) MUTATED        2
  DEL PEAK 24(17Q24.2) WILD-TYPE      3
D42V1, multiclass
        clus
vv       DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE
  CLUS_1                            4                             15
  CLUS_2                            1                             17
  CLUS_3                            5                              8
  CLUS_4                            6                             12
  CLUS_5                            6                              5
  CLUS_6                            0                              6
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(17Q24.2) MUTATED        5      3      5     10      0      1
  DEL PEAK 24(17Q24.2) WILD-TYPE     11     11      3      7      9     11
                                vv
clus                             CLUS_7
  DEL PEAK 24(17Q24.2) MUTATED        0
  DEL PEAK 24(17Q24.2) WILD-TYPE      2
D42V2, multiclass
        clus
vv       DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE
  CLUS_1                            5                             11
  CLUS_2                            3                             11
  CLUS_3                            5                              3
  CLUS_4                           10                              7
  CLUS_5                            0                              9
  CLUS_6                            1                             11
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(17Q24.2) MUTATED        2      4      2      5
  DEL PEAK 24(17Q24.2) WILD-TYPE      8      7      8      9
D42V3, multiclass
        clus
vv       DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE
  CLUS_1                            2                              8
  CLUS_2                            4                              7
  CLUS_3                            2                              8
  CLUS_4                            5                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(17Q24.2) MUTATED        1      2      1      1      1      0
  DEL PEAK 24(17Q24.2) WILD-TYPE      7      5      6      2      3      4
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 24(17Q24.2) MUTATED        3      4
  DEL PEAK 24(17Q24.2) WILD-TYPE      3      2
D42V4, multiclass
        clus
vv       DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            2                              5
  CLUS_3                            1                              6
  CLUS_4                            1                              2
  CLUS_5                            1                              3
  CLUS_6                            0                              4
  CLUS_7                            3                              3
  CLUS_8                            4                              2
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(17Q24.2) MUTATED        9      4      7      3
  DEL PEAK 24(17Q24.2) WILD-TYPE     15     10      9     20
D42V5, multiclass
        clus
vv       DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE
  CLUS_1                            9                             15
  CLUS_2                            4                             10
  CLUS_3                            7                              9
  CLUS_4                            3                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(17Q24.2) MUTATED        8     11      1      3
  DEL PEAK 24(17Q24.2) WILD-TYPE     15     12      6     21
D42V6, multiclass
        clus
vv       DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE
  CLUS_1                            8                             15
  CLUS_2                           11                             12
  CLUS_3                            1                              6
  CLUS_4                            3                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(17Q24.2) MUTATED       11      8      5
  DEL PEAK 24(17Q24.2) WILD-TYPE     18     16     20
D42V7, multiclass
        clus
vv       DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE
  CLUS_1                           11                             18
  CLUS_2                            8                             16
  CLUS_3                            5                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(17Q24.2) MUTATED        6      7      0      8      3
  DEL PEAK 24(17Q24.2) WILD-TYPE     10     20     11     12      1
D42V8, multiclass
        clus
vv       DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE
  CLUS_1                            6                             10
  CLUS_2                            7                             20
  CLUS_3                            0                             11
  CLUS_4                            8                             12
  CLUS_5                            3                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(17Q24.2) MUTATED        4      9      5      5
  DEL PEAK 24(17Q24.2) WILD-TYPE     12     10     11     21
D42V9, multiclass
        clus
vv       DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE
  CLUS_1                            4                             12
  CLUS_2                            9                             10
  CLUS_3                            5                             11
  CLUS_4                            5                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(17Q24.2) MUTATED        1      6      4      7      4      1
  DEL PEAK 24(17Q24.2) WILD-TYPE      5     18      7      7      7     10
D42V10, multiclass
        clus
vv       DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            6                             18
  CLUS_3                            4                              7
  CLUS_4                            7                              7
  CLUS_5                            4                              7
  CLUS_6                            1                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 25(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(20P12.1) MUTATED        5      0      0      2      5      0
  DEL PEAK 25(20P12.1) WILD-TYPE     14     18     13     16      6      6
                                vv
clus                             CLUS_7
  DEL PEAK 25(20P12.1) MUTATED        0
  DEL PEAK 25(20P12.1) WILD-TYPE      5
D43V1, multiclass
        clus
vv       DEL PEAK 25(20P12.1) MUTATED DEL PEAK 25(20P12.1) WILD-TYPE
  CLUS_1                            5                             14
  CLUS_2                            0                             18
  CLUS_3                            0                             13
  CLUS_4                            2                             16
  CLUS_5                            5                              6
  CLUS_6                            0                              6
  CLUS_7                            0                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(20P12.1) MUTATED        4      2      2      1      0      0
  DEL PEAK 25(20P12.1) WILD-TYPE     12     12      6     16      9     12
                                vv
clus                             CLUS_7
  DEL PEAK 25(20P12.1) MUTATED        0
  DEL PEAK 25(20P12.1) WILD-TYPE      2
D43V2, multiclass
        clus
vv       DEL PEAK 25(20P12.1) MUTATED DEL PEAK 25(20P12.1) WILD-TYPE
  CLUS_1                            4                             12
  CLUS_2                            2                             12
  CLUS_3                            2                              6
  CLUS_4                            1                             16
  CLUS_5                            0                              9
  CLUS_6                            0                             12
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(20P12.1) MUTATED        1      1      0      3
  DEL PEAK 25(20P12.1) WILD-TYPE      9     10     10     11
D43V3, multiclass
        clus
vv       DEL PEAK 25(20P12.1) MUTATED DEL PEAK 25(20P12.1) WILD-TYPE
  CLUS_1                            1                              9
  CLUS_2                            1                             10
  CLUS_3                            0                             10
  CLUS_4                            3                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(20P12.1) MUTATED        2      1      0      1      0      0
  DEL PEAK 25(20P12.1) WILD-TYPE      6      6      7      2      4      4
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 25(20P12.1) MUTATED        1      0
  DEL PEAK 25(20P12.1) WILD-TYPE      5      6
D43V4, multiclass
        clus
vv       DEL PEAK 25(20P12.1) MUTATED DEL PEAK 25(20P12.1) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            1                              6
  CLUS_3                            0                              7
  CLUS_4                            1                              2
  CLUS_5                            0                              4
  CLUS_6                            0                              4
  CLUS_7                            1                              5
  CLUS_8                            0                              6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(20P12.1) MUTATED        6      1      2      0
  DEL PEAK 25(20P12.1) WILD-TYPE     18     13     14     23
D43V5, multiclass
        clus
vv       DEL PEAK 25(20P12.1) MUTATED DEL PEAK 25(20P12.1) WILD-TYPE
  CLUS_1                            6                             18
  CLUS_2                            1                             13
  CLUS_3                            2                             14
  CLUS_4                            0                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(20P12.1) MUTATED        6      2      1      0
  DEL PEAK 25(20P12.1) WILD-TYPE     17     21      6     24
D43V6, multiclass
        clus
vv       DEL PEAK 25(20P12.1) MUTATED DEL PEAK 25(20P12.1) WILD-TYPE
  CLUS_1                            6                             17
  CLUS_2                            2                             21
  CLUS_3                            1                              6
  CLUS_4                            0                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(20P12.1) MUTATED        4      5      0
  DEL PEAK 25(20P12.1) WILD-TYPE     25     19     25
D43V7, multiclass
        clus
vv       DEL PEAK 25(20P12.1) MUTATED DEL PEAK 25(20P12.1) WILD-TYPE
  CLUS_1                            4                             25
  CLUS_2                            5                             19
  CLUS_3                            0                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(20P12.1) MUTATED        1      4      0      4      0
  DEL PEAK 25(20P12.1) WILD-TYPE     15     23     11     16      4
D43V8, multiclass
        clus
vv       DEL PEAK 25(20P12.1) MUTATED DEL PEAK 25(20P12.1) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            4                             23
  CLUS_3                            0                             11
  CLUS_4                            4                             16
  CLUS_5                            0                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(20P12.1) MUTATED        3      3      3      0
  DEL PEAK 25(20P12.1) WILD-TYPE     13     16     13     26
D43V9, multiclass
        clus
vv       DEL PEAK 25(20P12.1) MUTATED DEL PEAK 25(20P12.1) WILD-TYPE
  CLUS_1                            3                             13
  CLUS_2                            3                             16
  CLUS_3                            3                             13
  CLUS_4                            0                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(20P12.1) MUTATED        0      3      1      4      1      0
  DEL PEAK 25(20P12.1) WILD-TYPE      6     21     10     10     10     11
D43V10, multiclass
        clus
vv       DEL PEAK 25(20P12.1) MUTATED DEL PEAK 25(20P12.1) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            3                             21
  CLUS_3                            1                             10
  CLUS_4                            4                             10
  CLUS_5                            1                             10
  CLUS_6                            0                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 26(22Q12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(22Q12.1) MUTATED       10      3      7     14      8      6
  DEL PEAK 26(22Q12.1) WILD-TYPE      9     15      6      4      3      0
                                vv
clus                             CLUS_7
  DEL PEAK 26(22Q12.1) MUTATED        2
  DEL PEAK 26(22Q12.1) WILD-TYPE      3
D44V1, multiclass
        clus
vv       DEL PEAK 26(22Q12.1) MUTATED DEL PEAK 26(22Q12.1) WILD-TYPE
  CLUS_1                           10                              9
  CLUS_2                            3                             15
  CLUS_3                            7                              6
  CLUS_4                           14                              4
  CLUS_5                            8                              3
  CLUS_6                            6                              0
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(22Q12.1) MUTATED       10      8      5     12      3      4
  DEL PEAK 26(22Q12.1) WILD-TYPE      6      6      3      5      6      8
                                vv
clus                             CLUS_7
  DEL PEAK 26(22Q12.1) MUTATED        1
  DEL PEAK 26(22Q12.1) WILD-TYPE      1
D44V2, multiclass
        clus
vv       DEL PEAK 26(22Q12.1) MUTATED DEL PEAK 26(22Q12.1) WILD-TYPE
  CLUS_1                           10                              6
  CLUS_2                            8                              6
  CLUS_3                            5                              3
  CLUS_4                           12                              5
  CLUS_5                            3                              6
  CLUS_6                            4                              8
  CLUS_7                            1                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(22Q12.1) MUTATED        6      8      5      9
  DEL PEAK 26(22Q12.1) WILD-TYPE      4      3      5      5
D44V3, multiclass
        clus
vv       DEL PEAK 26(22Q12.1) MUTATED DEL PEAK 26(22Q12.1) WILD-TYPE
  CLUS_1                            6                              4
  CLUS_2                            8                              3
  CLUS_3                            5                              5
  CLUS_4                            9                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(22Q12.1) MUTATED        5      5      2      3      3      3
  DEL PEAK 26(22Q12.1) WILD-TYPE      3      2      5      0      1      1
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 26(22Q12.1) MUTATED        2      5
  DEL PEAK 26(22Q12.1) WILD-TYPE      4      1
D44V4, multiclass
        clus
vv       DEL PEAK 26(22Q12.1) MUTATED DEL PEAK 26(22Q12.1) WILD-TYPE
  CLUS_1                            5                              3
  CLUS_2                            5                              2
  CLUS_3                            2                              5
  CLUS_4                            3                              0
  CLUS_5                            3                              1
  CLUS_6                            3                              1
  CLUS_7                            2                              4
  CLUS_8                            5                              1
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(22Q12.1) MUTATED       15      8      8     12
  DEL PEAK 26(22Q12.1) WILD-TYPE      9      6      8     11
D44V5, multiclass
        clus
vv       DEL PEAK 26(22Q12.1) MUTATED DEL PEAK 26(22Q12.1) WILD-TYPE
  CLUS_1                           15                              9
  CLUS_2                            8                              6
  CLUS_3                            8                              8
  CLUS_4                           12                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(22Q12.1) MUTATED       14     15      5      9
  DEL PEAK 26(22Q12.1) WILD-TYPE      9      8      2     15
D44V6, multiclass
        clus
vv       DEL PEAK 26(22Q12.1) MUTATED DEL PEAK 26(22Q12.1) WILD-TYPE
  CLUS_1                           14                              9
  CLUS_2                           15                              8
  CLUS_3                            5                              2
  CLUS_4                            9                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(22Q12.1) MUTATED       19     12     12
  DEL PEAK 26(22Q12.1) WILD-TYPE     10     12     13
D44V7, multiclass
        clus
vv       DEL PEAK 26(22Q12.1) MUTATED DEL PEAK 26(22Q12.1) WILD-TYPE
  CLUS_1                           19                             10
  CLUS_2                           12                             12
  CLUS_3                           12                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(22Q12.1) MUTATED        9     13      6     12      3
  DEL PEAK 26(22Q12.1) WILD-TYPE      7     14      5      8      1
D44V8, multiclass
        clus
vv       DEL PEAK 26(22Q12.1) MUTATED DEL PEAK 26(22Q12.1) WILD-TYPE
  CLUS_1                            9                              7
  CLUS_2                           13                             14
  CLUS_3                            6                              5
  CLUS_4                           12                              8
  CLUS_5                            3                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(22Q12.1) MUTATED        9     10     10     13
  DEL PEAK 26(22Q12.1) WILD-TYPE      7      9      6     13
D44V9, multiclass
        clus
vv       DEL PEAK 26(22Q12.1) MUTATED DEL PEAK 26(22Q12.1) WILD-TYPE
  CLUS_1                            9                              7
  CLUS_2                           10                              9
  CLUS_3                           10                              6
  CLUS_4                           13                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(22Q12.1) MUTATED        2     10      7     10      6      7
  DEL PEAK 26(22Q12.1) WILD-TYPE      4     14      4      4      5      4
D44V10, multiclass
        clus
vv       DEL PEAK 26(22Q12.1) MUTATED DEL PEAK 26(22Q12.1) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                           10                             14
  CLUS_3                            7                              4
  CLUS_4                           10                              4
  CLUS_5                            6                              5
  CLUS_6                            7                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
