[choose_run_matlab2.sh] DOTKIT  .matlab-2010a
[choose_run_matlab2.sh] CMD     /xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/run_matlab2.py /xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Gistic2_Analysis/broadinstitute.org/cancer.genome.analysis/00264/127/ /xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Gistic2_Analysis/broadinstitute.org/cancer.genome.analysis/00264/127/call_gistic2 . 4 /xchip/cga/gdac-prod/tcga-gdac/jobResults/PrepareGisticDNASeq/BRCA-TP/22507115/segmentationfile.txt /xchip/cga/gdac-prod/tcga-gdac/jobResults/PrepareGisticDNASeq/BRCA-TP/22507115/markersfile.txt /xchip/cga/reference/gistic2/hg19_GENCODE_v18_20140127.mat /xchip/gistic/CNV/SNP6.merged.151117.hg19.CNV.txt 0.3 0.3 2 0.5 0 0.99 10 1 10000 0 extreme /xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Gistic2_Analysis/broadinstitute.org/cancer.genome.analysis/00264/127/version.txt
[run_matlab2.py] [command line] matlab_exe = /xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Gistic2_Analysis/broadinstitute.org/cancer.genome.analysis/00264/127/call_gistic2
[run_matlab2.py] [command line] matlab_args = ['.', '4', '/xchip/cga/gdac-prod/tcga-gdac/jobResults/PrepareGisticDNASeq/BRCA-TP/22507115/segmentationfile.txt', '/xchip/cga/gdac-prod/tcga-gdac/jobResults/PrepareGisticDNASeq/BRCA-TP/22507115/markersfile.txt', '/xchip/cga/reference/gistic2/hg19_GENCODE_v18_20140127.mat', '/xchip/gistic/CNV/SNP6.merged.151117.hg19.CNV.txt', '0.3', '0.3', '2', '0.5', '0', '0.99', '10', '1', '10000', '0', 'extreme', '/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Gistic2_Analysis/broadinstitute.org/cancer.genome.analysis/00264/127/version.txt']
[run_matlab2.py] [command line] with_display = False
[run_matlab2.py] [command line] libdir = /xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Gistic2_Analysis/broadinstitute.org/cancer.genome.analysis/00264/127/
[run_matlab2.py] LD_LIBRARY_PATH = .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2010a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2010a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2010a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2010a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2010a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2010a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2010a/sys/java/jre/glnxa64/jre/lib/amd64
[run_matlab2.py] MCR_CACHE_ROOT = /xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/BRCA-TP/22507698
[run_matlab2.py] Matlab command = /xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Gistic2_Analysis/broadinstitute.org/cancer.genome.analysis/00264/127/call_gistic2 . 4 /xchip/cga/gdac-prod/tcga-gdac/jobResults/PrepareGisticDNASeq/BRCA-TP/22507115/segmentationfile.txt /xchip/cga/gdac-prod/tcga-gdac/jobResults/PrepareGisticDNASeq/BRCA-TP/22507115/markersfile.txt /xchip/cga/reference/gistic2/hg19_GENCODE_v18_20140127.mat /xchip/gistic/CNV/SNP6.merged.151117.hg19.CNV.txt 0.3 0.3 2 0.5 0 0.99 10 1 10000 0 extreme /xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Gistic2_Analysis/broadinstitute.org/cancer.genome.analysis/00264/127/version.txt
Warning: No display specified.  You will not be able to display graphics on the screen.
Running GISTIC version 2.0.21

fields = 

    {1x1 cell}    {1x1 cell}


cgaRevision =

Firehose task version: 127


inputInfoFilename =

gisticInputs.txt


fid =

     3


ans =

     9


ans =

   118


ans =

   108


ans =

    76


ans =

    60


ans =

    28


ans =

    23


ans =

    13


ans =

    24


ans =

    22


ans =

    22


ans =

    21


ans =

    21


ans =

    30


ans =

    17


ans =

    29


ans =

     0

...Matching fields to Array List File:
      Array  --->  array

conf_level =

    0.9900


params = 

         array_list_file: 'array_list.txt'
                cnv_file: {[1x49 char]}
                   t_amp: 0.3000
                   t_del: 0.3000
             genepattern: 0
       join_segment_size: 10
                     ext: ''
                remove_X: 0
      run_broad_analysis: 1
                   ziggs: [1x1 struct]
        broad_len_cutoff: 0.5000
               qv_thresh: 0.2500
              conf_level: [0.9900 0.9900]
                     cap: 2
                   alpha: [2.5145 2.1653]
          do_gene_gistic: 0
         save_data_files: 1
     conserve_disk_space: 0
            use_segarray: 1
        write_gene_files: 1
           use_two_sided: 0
          do_arbitration: 1
              peak_types: ''
           save_seg_data: 1
             arm_peeloff: 1
    gene_collapse_method: 'extreme'

Checking inputs...
Making D struct
Reading Markers File '/xchip/cga/gdac-prod/tcga-gdac/jobResults/PrepareGisticDNASeq/BRCA-TP/22507115/markersfile.txt'
Reading Seg File '/xchip/cga/gdac-prod/tcga-gdac/jobResults/PrepareGisticDNASeq/BRCA-TP/22507115/segmentationfile.txt'
CL = 
               sdesc: {19x1 cell}
                chrn: [4449x1 double]
                 pos: [4449x1 double]
              marker: {4449x1 cell}
                 chr: {1x4449 cell}
    suppress_history: 1
               islog: 1
                isMB: 0
                 dat: [4449x19 SegArray]

Sub-selecting samples...
...Matching fields to Array List File:
      Array  --->  array
Matched all 19 samples in array list file
CL = 
               sdesc: {19x1 cell}
                chrn: [4449x1 double]
                 pos: [4449x1 double]
              marker: {4449x1 cell}
                 chr: {1x4449 cell}
    suppress_history: 1
               islog: 1
                isMB: 0
                 dat: [4449x19 SegArray]

Matrix size 4449    19
Removing 908 markers
Removing NaN probes...
Removing 40 markers with NaNs
Matrix size 3501    19
Merging small segments...
currently not taking care of edge of chromosomes!!!
Smoothing segments for sample 1:
Smoothing segments for sample 2:
Smoothing segments for sample 3:
Smoothing segments for sample 4:
Smoothing segments for sample 5:
Smoothing segments for sample 6:
Smoothing segments for sample 7:
Smoothing segments for sample 8:
Smoothing segments for sample 9:
Smoothing segments for sample 10:
Smoothing segments for sample 11:
Smoothing segments for sample 12:
Smoothing segments for sample 13:
Smoothing segments for sample 14:
Smoothing segments for sample 15:
Smoothing segments for sample 16:
Smoothing segments for sample 17:
Smoothing segments for sample 18:
Smoothing segments for sample 19:
Median centering data...
Saving segmented data file...
Running focal analysis...
Using supplied D...
Loading cytoband/refgene file: '/xchip/cga/reference/gistic2/hg19_GENCODE_v18_20140127.mat'
...Matching fields to Array List File:
      Array  --->  array
Subselecting 19 samples in data.

Nsamples =

    19

Running focal GISTIC version 2.0.21
params = 
         array_list_file: 'array_list.txt'
                cnv_file: {[1x49 char]}
                   t_amp: 0.3000
                   t_del: 0.3000
             genepattern: 0
       join_segment_size: 10
                     ext: ''
                remove_X: 0
      run_broad_analysis: 1
                   ziggs: [1x1 struct]
        broad_len_cutoff: 0.5000
               qv_thresh: 0.2500
              conf_level: [0.9900 0.9900]
                     cap: 2
                   alpha: [2.5145 2.1653]
          do_gene_gistic: 0
         save_data_files: 1
     conserve_disk_space: 0
            use_segarray: 1
        write_gene_files: 1
           use_two_sided: 0
          do_arbitration: 1
              peak_types: ''
           save_seg_data: 1
             arm_peeloff: 1
    gene_collapse_method: 'extreme'
                     res: 0.0026
                   fname: ''
                   islog: 1

Removed 0 samples with more than 10000 segments
Converting data from log to copy number space...
Performing ziggurat deconstruction!
Reconstructing focal genomes...
Reconstructing genome: amp
Reconstructing genome: aod
Reconstructing genome: del
Reconstructing genome: doa
Saving results to: /xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/BRCA-TP/22507698/focal_dat.0.5.mat
Scoring segments...
Reconstructing genome: amp
Reconstructing genome: del
Scoring genomes...
Reconstructing genome: amp
Reconstructing genome: aod
Reconstructing genome: del
Reconstructing genome: doa
Saving results to: /xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/BRCA-TP/22507698/scores.0.5.mat
Performing background permutations...
Amps...
Conv:...................
Dels...
Conv:...................
Saving stats...
Running arbitrated peel-off...
Finding peaks on chromosome 1
Computing background score...
Finding peaks on chromosome 2
Computing background score...
Finding peaks on chromosome 3
Computing background score...
Finding peaks on chromosome 4
Computing background score...
Finding peaks on chromosome 5
Computing background score...
Finding peaks on chromosome 6
Computing background score...
Finding peaks on chromosome 7
Computing background score...
Finding peaks on chromosome 8
Removing 8 segments from data
Removing 15 segments from data
Computing background score...
Computing score for peak 1 of 1 on chromosome
Amplification peak at chr8:37427095-38115723(1322:1331)
q-value = 0.16771 & residual q-value = 0.16771
Finding peaks on chromosome 9
Computing background score...
Finding peaks on chromosome 10
Computing background score...
Finding peaks on chromosome 11
Computing background score...
Finding peaks on chromosome 12
Computing background score...
Finding peaks on chromosome 13
Computing background score...
Finding peaks on chromosome 14
Computing background score...
Finding peaks on chromosome 15
Computing background score...
Finding peaks on chromosome 16
Computing background score...
Finding peaks on chromosome 17
Computing background score...
Finding peaks on chromosome 18
Computing background score...
Finding peaks on chromosome 19
Computing background score...
Finding peaks on chromosome 20
Removing 11 segments from data
Removing 1 segments from data
Computing background score...
Computing score for peak 1 of 1 on chromosome
Amplification peak at chr20:51719009-51788385(3185:3186)
q-value = 0.22371 & residual q-value = 0.22371
Finding peaks on chromosome 21
Computing background score...
Finding peaks on chromosome 22
Computing background score...
Finding peaks on chromosome 23
Computing background score...
Finding peaks on chromosome 1
Computing background score...
Finding peaks on chromosome 2
Computing background score...
Finding peaks on chromosome 3
Computing background score...
Finding peaks on chromosome 4
Computing background score...
Finding peaks on chromosome 5
Computing background score...
Finding peaks on chromosome 6
Computing background score...
Finding peaks on chromosome 7
Computing background score...
Finding peaks on chromosome 8
Removing 6 segments from data
Removing 1 segments from data
Computing background score...
Computing score for peak 1 of 1 on chromosome
Deletion peak at chr8:18335062-22699484(1220:1231)
q-value = 0.17599 & residual q-value = 0.17599
Finding peaks on chromosome 9
Computing background score...
Finding peaks on chromosome 10
Computing background score...
Finding peaks on chromosome 11
Removing 6 segments from data
Removing 2 segments from data
Computing background score...
Computing score for peak 1 of 1 on chromosome
Deletion peak at chr11:85800523-134946455(1962:1979)
q-value = 0.17599 & residual q-value = 0.17599
Finding peaks on chromosome 12
Computing background score...
Finding peaks on chromosome 13
Computing background score...
Finding peaks on chromosome 14
Computing background score...
Finding peaks on chromosome 15
Computing background score...
Finding peaks on chromosome 16
Computing background score...
Finding peaks on chromosome 17
Computing background score...
Finding peaks on chromosome 18
Computing background score...
Finding peaks on chromosome 19
Computing background score...
Finding peaks on chromosome 20
Computing background score...
Finding peaks on chromosome 21
Computing background score...
Finding peaks on chromosome 22
Computing background score...
Finding peaks on chromosome 23
Computing background score...
Saving peak regions...
Computing permuted score distributions...
Performing permutation 1 of 25
Performing permutation 2 of 25
Performing permutation 3 of 25
Performing permutation 4 of 25
Performing permutation 5 of 25
Performing permutation 6 of 25
Performing permutation 7 of 25
Performing permutation 8 of 25
Performing permutation 9 of 25
Performing permutation 10 of 25
Performing permutation 11 of 25
Performing permutation 12 of 25
Performing permutation 13 of 25
Performing permutation 14 of 25
Performing permutation 15 of 25
Performing permutation 16 of 25
Performing permutation 17 of 25
Performing permutation 18 of 25
Performing permutation 19 of 25
Performing permutation 20 of 25
Performing permutation 21 of 25
Performing permutation 22 of 25
Performing permutation 23 of 25
Performing permutation 24 of 25
Performing permutation 25 of 25
Performing permutation 1 of 25
Performing permutation 2 of 25
Performing permutation 3 of 25
Performing permutation 4 of 25
Performing permutation 5 of 25
Performing permutation 6 of 25
Performing permutation 7 of 25
Performing permutation 8 of 25
Performing permutation 9 of 25
Performing permutation 10 of 25
Performing permutation 11 of 25
Performing permutation 12 of 25
Performing permutation 13 of 25
Performing permutation 14 of 25
Performing permutation 15 of 25
Performing permutation 16 of 25
Performing permutation 17 of 25
Performing permutation 18 of 25
Performing permutation 19 of 25
Performing permutation 20 of 25
Performing permutation 21 of 25
Performing permutation 22 of 25
Performing permutation 23 of 25
Performing permutation 24 of 25
Performing permutation 25 of 25
Saving permuted score files...
Computing wide peak regions...
Running Regbounder at confidence level: 99%
     1

Calculating on permutation 1 of 25
Calculating on permutation 2 of 25
Calculating on permutation 3 of 25
Calculating on permutation 4 of 25
Calculating on permutation 5 of 25
Calculating on permutation 6 of 25
Calculating on permutation 7 of 25
Calculating on permutation 8 of 25
Calculating on permutation 9 of 25
Calculating on permutation 10 of 25
Calculating on permutation 11 of 25
Calculating on permutation 12 of 25
Calculating on permutation 13 of 25
Calculating on permutation 14 of 25
Calculating on permutation 15 of 25
Calculating on permutation 16 of 25
Calculating on permutation 17 of 25
Calculating on permutation 18 of 25
Calculating on permutation 19 of 25
Calculating on permutation 20 of 25
Calculating on permutation 21 of 25
Calculating on permutation 22 of 25
Calculating on permutation 23 of 25
Calculating on permutation 24 of 25
Calculating on permutation 25 of 25
     2

Calculating on permutation 1 of 25
Calculating on permutation 2 of 25
Calculating on permutation 3 of 25
Calculating on permutation 4 of 25
Calculating on permutation 5 of 25
Calculating on permutation 6 of 25
Calculating on permutation 7 of 25
Calculating on permutation 8 of 25
Calculating on permutation 9 of 25
Calculating on permutation 10 of 25
Calculating on permutation 11 of 25
Calculating on permutation 12 of 25
Calculating on permutation 13 of 25
Calculating on permutation 14 of 25
Calculating on permutation 15 of 25
Calculating on permutation 16 of 25
Calculating on permutation 17 of 25
Calculating on permutation 18 of 25
Calculating on permutation 19 of 25
Calculating on permutation 20 of 25
Calculating on permutation 21 of 25
Calculating on permutation 22 of 25
Calculating on permutation 23 of 25
Calculating on permutation 24 of 25
Calculating on permutation 25 of 25
Amplification wide peak at chr8:36890564-39708672(1303:1358)
Amplification wide peak at chr20:46717217-62965506(3112:3288)
Deletion wide peak at chr8:23380-22699485(1194:1232)
Deletion wide peak at chr11:79345180-134946455(1941:1979)
Saving final_regions...
Writing output files...
Writing all_lesions file to: /xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/BRCA-TP/22507698/all_lesions.conf_99.txt
Adding gene annotations
Writing output gene table files
Writing q value, p value and amp/del score file
About to save Raw_copy_number figure file
{Warning: Large-scale algorithm does not currently solve this problem
formulation,
using medium-scale algorithm instead.} 
> In quadprog at 291
  In find_text_pos at 42
  In draw_spaced_text at 42
  In plot_snp_score at 470
  In gistic_plots at 214
  In run_focal_gistic at 359
  In run_gistic20 at 125
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: Large-scale algorithm does not currently solve this problem
formulation,
using medium-scale algorithm instead.} 
> In quadprog at 291
  In find_text_pos at 42
  In draw_spaced_text at 42
  In plot_snp_score at 470
  In gistic_plots at 214
  In run_focal_gistic at 359
  In run_gistic20 at 125
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
Focal GISTIC completed without error
Running broad analysis...
Reconstructing genome: amp
Reconstructing genome: aod
Reconstructing genome: del
Reconstructing genome: doa
Calculating median of arm values...
Finding median of arms on chromosome:
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    10

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Finding median of arms on chromosome:
     1

     2

     3

     4

     5

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    10

    11

    12

    13

    14

    15

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Writing arm medians file...
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp before} 
> In find_snps at 66
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
{Warning: no snp after} 
> In find_snps at 73
  In add_snps_to_rg at 26
  In run_gistic20 at 165
  In run_gistic2_from_seg at 225
  In call_gistic2 at 119
Reducing all data to genes
reduce_to_genes: defining gene 1000 of 24924
reduce_to_genes: defining gene 2000 of 24924
reduce_to_genes: defining gene 3000 of 24924
reduce_to_genes: defining gene 4000 of 24924
reduce_to_genes: defining gene 5000 of 24924
reduce_to_genes: defining gene 6000 of 24924
reduce_to_genes: defining gene 7000 of 24924
reduce_to_genes: defining gene 8000 of 24924
reduce_to_genes: defining gene 9000 of 24924
reduce_to_genes: defining gene 10000 of 24924
reduce_to_genes: defining gene 11000 of 24924
reduce_to_genes: defining gene 12000 of 24924
reduce_to_genes: defining gene 13000 of 24924
reduce_to_genes: defining gene 14000 of 24924
reduce_to_genes: defining gene 15000 of 24924
reduce_to_genes: defining gene 16000 of 24924
reduce_to_genes: defining gene 17000 of 24924
reduce_to_genes: defining gene 18000 of 24924
reduce_to_genes: defining gene 19000 of 24924
reduce_to_genes: defining gene 20000 of 24924
reduce_to_genes: defining gene 21000 of 24924
reduce_to_genes: defining gene 22000 of 24924
reduce_to_genes: defining gene 23000 of 24924
reduce_to_genes: defining gene 24000 of 24924
reduce_to_genes: reducing gene 1000 of 24776
reduce_to_genes: reducing gene 2000 of 24776
reduce_to_genes: reducing gene 3000 of 24776
reduce_to_genes: reducing gene 4000 of 24776
reduce_to_genes: reducing gene 5000 of 24776
reduce_to_genes: reducing gene 6000 of 24776
reduce_to_genes: reducing gene 7000 of 24776
reduce_to_genes: reducing gene 8000 of 24776
reduce_to_genes: reducing gene 9000 of 24776
reduce_to_genes: reducing gene 10000 of 24776
reduce_to_genes: reducing gene 11000 of 24776
reduce_to_genes: reducing gene 12000 of 24776
reduce_to_genes: reducing gene 13000 of 24776
reduce_to_genes: reducing gene 14000 of 24776
reduce_to_genes: reducing gene 15000 of 24776
reduce_to_genes: reducing gene 16000 of 24776
reduce_to_genes: reducing gene 17000 of 24776
reduce_to_genes: reducing gene 18000 of 24776
reduce_to_genes: reducing gene 19000 of 24776
reduce_to_genes: reducing gene 20000 of 24776
reduce_to_genes: reducing gene 21000 of 24776
reduce_to_genes: reducing gene 22000 of 24776
reduce_to_genes: reducing gene 23000 of 24776
reduce_to_genes: reducing gene 24000 of 24776
        1000

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Reducing focal data to genes
Reconstructing genome: amp
Reconstructing genome: aod
Reconstructing genome: del
Reconstructing genome: doa
reduce_to_genes: defining gene 1000 of 24924
reduce_to_genes: defining gene 2000 of 24924
reduce_to_genes: defining gene 3000 of 24924
reduce_to_genes: defining gene 4000 of 24924
reduce_to_genes: defining gene 5000 of 24924
reduce_to_genes: defining gene 6000 of 24924
reduce_to_genes: defining gene 7000 of 24924
reduce_to_genes: defining gene 8000 of 24924
reduce_to_genes: defining gene 9000 of 24924
reduce_to_genes: defining gene 10000 of 24924
reduce_to_genes: defining gene 11000 of 24924
reduce_to_genes: defining gene 12000 of 24924
reduce_to_genes: defining gene 13000 of 24924
reduce_to_genes: defining gene 14000 of 24924
reduce_to_genes: defining gene 15000 of 24924
reduce_to_genes: defining gene 16000 of 24924
reduce_to_genes: defining gene 17000 of 24924
reduce_to_genes: defining gene 18000 of 24924
reduce_to_genes: defining gene 19000 of 24924
reduce_to_genes: defining gene 20000 of 24924
reduce_to_genes: defining gene 21000 of 24924
reduce_to_genes: defining gene 22000 of 24924
reduce_to_genes: defining gene 23000 of 24924
reduce_to_genes: defining gene 24000 of 24924
reduce_to_genes: reducing gene 1000 of 24776
reduce_to_genes: reducing gene 2000 of 24776
reduce_to_genes: reducing gene 3000 of 24776
reduce_to_genes: reducing gene 4000 of 24776
reduce_to_genes: reducing gene 5000 of 24776
reduce_to_genes: reducing gene 6000 of 24776
reduce_to_genes: reducing gene 7000 of 24776
reduce_to_genes: reducing gene 8000 of 24776
reduce_to_genes: reducing gene 9000 of 24776
reduce_to_genes: reducing gene 10000 of 24776
reduce_to_genes: reducing gene 11000 of 24776
reduce_to_genes: reducing gene 12000 of 24776
reduce_to_genes: reducing gene 13000 of 24776
reduce_to_genes: reducing gene 14000 of 24776
reduce_to_genes: reducing gene 15000 of 24776
reduce_to_genes: reducing gene 16000 of 24776
reduce_to_genes: reducing gene 17000 of 24776
reduce_to_genes: reducing gene 18000 of 24776
reduce_to_genes: reducing gene 19000 of 24776
reduce_to_genes: reducing gene 20000 of 24776
reduce_to_genes: reducing gene 21000 of 24776
reduce_to_genes: reducing gene 22000 of 24776
reduce_to_genes: reducing gene 23000 of 24776
reduce_to_genes: reducing gene 24000 of 24776
        1000

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       10000

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       12000

       13000

       14000

       15000

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       17000

       18000

       19000

       20000

       21000

       22000

       23000

       24000

Reducing broad data to genes
Reconstructing genome: amp
Reconstructing genome: aod
Reconstructing genome: del
Reconstructing genome: doa
reduce_to_genes: defining gene 1000 of 24924
reduce_to_genes: defining gene 2000 of 24924
reduce_to_genes: defining gene 3000 of 24924
reduce_to_genes: defining gene 4000 of 24924
reduce_to_genes: defining gene 5000 of 24924
reduce_to_genes: defining gene 6000 of 24924
reduce_to_genes: defining gene 7000 of 24924
reduce_to_genes: defining gene 8000 of 24924
reduce_to_genes: defining gene 9000 of 24924
reduce_to_genes: defining gene 10000 of 24924
reduce_to_genes: defining gene 11000 of 24924
reduce_to_genes: defining gene 12000 of 24924
reduce_to_genes: defining gene 13000 of 24924
reduce_to_genes: defining gene 14000 of 24924
reduce_to_genes: defining gene 15000 of 24924
reduce_to_genes: defining gene 16000 of 24924
reduce_to_genes: defining gene 17000 of 24924
reduce_to_genes: defining gene 18000 of 24924
reduce_to_genes: defining gene 19000 of 24924
reduce_to_genes: defining gene 20000 of 24924
reduce_to_genes: defining gene 21000 of 24924
reduce_to_genes: defining gene 22000 of 24924
reduce_to_genes: defining gene 23000 of 24924
reduce_to_genes: defining gene 24000 of 24924
reduce_to_genes: reducing gene 1000 of 24776
reduce_to_genes: reducing gene 2000 of 24776
reduce_to_genes: reducing gene 3000 of 24776
reduce_to_genes: reducing gene 4000 of 24776
reduce_to_genes: reducing gene 5000 of 24776
reduce_to_genes: reducing gene 6000 of 24776
reduce_to_genes: reducing gene 7000 of 24776
reduce_to_genes: reducing gene 8000 of 24776
reduce_to_genes: reducing gene 9000 of 24776
reduce_to_genes: reducing gene 10000 of 24776
reduce_to_genes: reducing gene 11000 of 24776
reduce_to_genes: reducing gene 12000 of 24776
reduce_to_genes: reducing gene 13000 of 24776
reduce_to_genes: reducing gene 14000 of 24776
reduce_to_genes: reducing gene 15000 of 24776
reduce_to_genes: reducing gene 16000 of 24776
reduce_to_genes: reducing gene 17000 of 24776
reduce_to_genes: reducing gene 18000 of 24776
reduce_to_genes: reducing gene 19000 of 24776
reduce_to_genes: reducing gene 20000 of 24776
reduce_to_genes: reducing gene 21000 of 24776
reduce_to_genes: reducing gene 22000 of 24776
reduce_to_genes: reducing gene 23000 of 24776
reduce_to_genes: reducing gene 24000 of 24776
        1000

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Calculating sample cutoffs...
Reading file using format:%s%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f
Writing sample cutoff file...
Thresholding data...
Reading file using format:%s%f%f
Reading file using format:%s%s%s%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f
Writing thresholded gene calls...
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Finished writing gene tables.
GISTIC2 run completed!
Reconstructing genome: amp
Reconstructing genome: aod
Reconstructing genome: del
Reconstructing genome: doa
Reconstructing genome: amp
Reconstructing genome: aod
Reconstructing genome: del
Reconstructing genome: doa
