[1] "ofn"        "-oTCESC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/CESC-TP/22541064/CESC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/CESC-TP/22507940/transformed.cor.cli.txt"

nPatients in clinical file=307, in cluster file=295, common to both=295
[1]  63 295
[1] "AMP PEAK  1(1P31.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE 
                           96                           199 
  AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE 
                           96                           199 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          158                           137 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          158                           137 
[1] "AMP PEAK  3(2P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE 
                           79                           216 
  AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE 
                           79                           216 
[1] "AMP PEAK  4(2Q33.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(2Q33.1) MUTATED AMP PEAK  4(2Q33.1) WILD-TYPE 
                           41                           254 
  AMP PEAK  4(2Q33.1) MUTATED AMP PEAK  4(2Q33.1) WILD-TYPE 
                           41                           254 
[1] "AMP PEAK  5(3Q26.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE 
                           227                             68 
  AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE 
                           227                             68 
[1] "AMP PEAK  6(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE 
                         21                         274 
  AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE 
                         21                         274 
[1] "AMP PEAK  7(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           138                            157 
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           138                            157 
[1] "AMP PEAK  8(6P21.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6P21.33) MUTATED AMP PEAK  8(6P21.33) WILD-TYPE 
                            82                            213 
  AMP PEAK  8(6P21.33) MUTATED AMP PEAK  8(6P21.33) WILD-TYPE 
                            82                            213 
[1] "AMP PEAK  9(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE 
                           52                           243 
  AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE 
                           52                           243 
[1] "AMP PEAK 10(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE 
                           127                            168 
  AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE 
                           127                            168 
[1] "AMP PEAK 11(9P24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(9P24.1) MUTATED AMP PEAK 11(9P24.1) WILD-TYPE 
                           63                           232 
  AMP PEAK 11(9P24.1) MUTATED AMP PEAK 11(9P24.1) WILD-TYPE 
                           63                           232 
[1] "AMP PEAK 12(11P12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(11P12) MUTATED AMP PEAK 12(11P12) WILD-TYPE 
                          23                          272 
  AMP PEAK 12(11P12) MUTATED AMP PEAK 12(11P12) WILD-TYPE 
                          23                          272 
[1] "AMP PEAK 13(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE 
                            41                            254 
  AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE 
                            41                            254 
[1] "AMP PEAK 14(11Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(11Q22.1) MUTATED AMP PEAK 14(11Q22.1) WILD-TYPE 
                            47                            248 
  AMP PEAK 14(11Q22.1) MUTATED AMP PEAK 14(11Q22.1) WILD-TYPE 
                            47                            248 
[1] "AMP PEAK 15(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE 
                            65                            230 
  AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE 
                            65                            230 
[1] "AMP PEAK 16(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(13Q34) MUTATED AMP PEAK 16(13Q34) WILD-TYPE 
                          69                          226 
  AMP PEAK 16(13Q34) MUTATED AMP PEAK 16(13Q34) WILD-TYPE 
                          69                          226 
[1] "AMP PEAK 17(15Q26.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE 
                            76                            219 
  AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE 
                            76                            219 
[1] "AMP PEAK 18(16P13.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(16P13.13) MUTATED AMP PEAK 18(16P13.13) WILD-TYPE 
                             65                             230 
  AMP PEAK 18(16P13.13) MUTATED AMP PEAK 18(16P13.13) WILD-TYPE 
                             65                             230 
[1] "AMP PEAK 19(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                          55                          240 
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                          55                          240 
[1] "AMP PEAK 20(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE 
                            74                            221 
  AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE 
                            74                            221 
[1] "AMP PEAK 21(19P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(19P13.3) MUTATED AMP PEAK 21(19P13.3) WILD-TYPE 
                            39                            256 
  AMP PEAK 21(19P13.3) MUTATED AMP PEAK 21(19P13.3) WILD-TYPE 
                            39                            256 
[1] "AMP PEAK 22(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE 
                            43                            252 
  AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE 
                            43                            252 
[1] "AMP PEAK 23(19Q13.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(19Q13.13) MUTATED AMP PEAK 23(19Q13.13) WILD-TYPE 
                             93                             202 
  AMP PEAK 23(19Q13.13) MUTATED AMP PEAK 23(19Q13.13) WILD-TYPE 
                             93                             202 
[1] "AMP PEAK 24(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE 
                            135                             160 
  AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE 
                            135                             160 
[1] "AMP PEAK 25(21Q22.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(21Q22.13) MUTATED AMP PEAK 25(21Q22.13) WILD-TYPE 
                             48                             247 
  AMP PEAK 25(21Q22.13) MUTATED AMP PEAK 25(21Q22.13) WILD-TYPE 
                             48                             247 
[1] "AMP PEAK 26(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(XQ28) MUTATED AMP PEAK 26(XQ28) WILD-TYPE 
                         75                         220 
  AMP PEAK 26(XQ28) MUTATED AMP PEAK 26(XQ28) WILD-TYPE 
                         75                         220 
[1] "DEL PEAK  1(1P36.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            40                            255 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            40                            255 
[1] "DEL PEAK  2(1P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           34                           261 
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           34                           261 
[1] "DEL PEAK  3(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           65                           230 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           65                           230 
[1] "DEL PEAK  4(2Q37.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE 
                          129                           166 
  DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE 
                          129                           166 
[1] "DEL PEAK  5(3P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE 
                          113                           182 
  DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE 
                          113                           182 
[1] "DEL PEAK  6(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE 
                          134                           161 
  DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE 
                          134                           161 
[1] "DEL PEAK  7(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4P16.3) MUTATED DEL PEAK  7(4P16.3) WILD-TYPE 
                          127                           168 
  DEL PEAK  7(4P16.3) MUTATED DEL PEAK  7(4P16.3) WILD-TYPE 
                          127                           168 
[1] "DEL PEAK  8(4Q21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4Q21.3) MUTATED DEL PEAK  8(4Q21.3) WILD-TYPE 
                          103                           192 
  DEL PEAK  8(4Q21.3) MUTATED DEL PEAK  8(4Q21.3) WILD-TYPE 
                          103                           192 
[1] "DEL PEAK  9(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                          100                           195 
  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                          100                           195 
[1] "DEL PEAK 10(4Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(4Q35.2) MUTATED DEL PEAK 10(4Q35.2) WILD-TYPE 
                          114                           181 
  DEL PEAK 10(4Q35.2) MUTATED DEL PEAK 10(4Q35.2) WILD-TYPE 
                          114                           181 
[1] "DEL PEAK 11(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE 
                           76                           219 
  DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE 
                           76                           219 
[1] "DEL PEAK 12(5Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(5Q35.2) MUTATED DEL PEAK 12(5Q35.2) WILD-TYPE 
                           71                           224 
  DEL PEAK 12(5Q35.2) MUTATED DEL PEAK 12(5Q35.2) WILD-TYPE 
                           71                           224 
[1] "DEL PEAK 13(6P24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(6P24.2) MUTATED DEL PEAK 13(6P24.2) WILD-TYPE 
                           46                           249 
  DEL PEAK 13(6P24.2) MUTATED DEL PEAK 13(6P24.2) WILD-TYPE 
                           46                           249 
[1] "DEL PEAK 14(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE 
                        100                         195 
  DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE 
                        100                         195 
[1] "DEL PEAK 15(7Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(7Q34) MUTATED DEL PEAK 15(7Q34) WILD-TYPE 
                         60                         235 
  DEL PEAK 15(7Q34) MUTATED DEL PEAK 15(7Q34) WILD-TYPE 
                         60                         235 
[1] "DEL PEAK 16(8P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(8P23.3) MUTATED DEL PEAK 16(8P23.3) WILD-TYPE 
                          104                           191 
  DEL PEAK 16(8P23.3) MUTATED DEL PEAK 16(8P23.3) WILD-TYPE 
                          104                           191 
[1] "DEL PEAK 17(8P23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(8P23.1) MUTATED DEL PEAK 17(8P23.1) WILD-TYPE 
                           97                           198 
  DEL PEAK 17(8P23.1) MUTATED DEL PEAK 17(8P23.1) WILD-TYPE 
                           97                           198 
[1] "DEL PEAK 18(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                             86                             209 
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                             86                             209 
[1] "DEL PEAK 19(11P15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(11P15.1) MUTATED DEL PEAK 19(11P15.1) WILD-TYPE 
                           102                            193 
  DEL PEAK 19(11P15.1) MUTATED DEL PEAK 19(11P15.1) WILD-TYPE 
                           102                            193 
[1] "DEL PEAK 20(11Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(11Q23.3) MUTATED DEL PEAK 20(11Q23.3) WILD-TYPE 
                           162                            133 
  DEL PEAK 20(11Q23.3) MUTATED DEL PEAK 20(11Q23.3) WILD-TYPE 
                           162                            133 
[1] "DEL PEAK 21(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE 
                         160                          135 
  DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE 
                         160                          135 
[1] "DEL PEAK 22(13Q12.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(13Q12.11) MUTATED DEL PEAK 22(13Q12.11) WILD-TYPE 
                             98                             197 
  DEL PEAK 22(13Q12.11) MUTATED DEL PEAK 22(13Q12.11) WILD-TYPE 
                             98                             197 
[1] "DEL PEAK 23(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE 
                           118                            177 
  DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE 
                           118                            177 
[1] "DEL PEAK 24(14Q32.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(14Q32.31) MUTATED DEL PEAK 24(14Q32.31) WILD-TYPE 
                             50                             245 
  DEL PEAK 24(14Q32.31) MUTATED DEL PEAK 24(14Q32.31) WILD-TYPE 
                             50                             245 
[1] "DEL PEAK 25(15Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(15Q21.1) MUTATED DEL PEAK 25(15Q21.1) WILD-TYPE 
                            70                            225 
  DEL PEAK 25(15Q21.1) MUTATED DEL PEAK 25(15Q21.1) WILD-TYPE 
                            70                            225 
[1] "DEL PEAK 26(16Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(16Q11.2) MUTATED DEL PEAK 26(16Q11.2) WILD-TYPE 
                            53                            242 
  DEL PEAK 26(16Q11.2) MUTATED DEL PEAK 26(16Q11.2) WILD-TYPE 
                            53                            242 
[1] "DEL PEAK 27(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE 
                            55                            240 
  DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE 
                            55                            240 
[1] "DEL PEAK 28(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(17P12) MUTATED DEL PEAK 28(17P12) WILD-TYPE 
                         109                          186 
  DEL PEAK 28(17P12) MUTATED DEL PEAK 28(17P12) WILD-TYPE 
                         109                          186 
[1] "DEL PEAK 29(17Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE 
                            51                            244 
  DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE 
                            51                            244 
[1] "DEL PEAK 30(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(18Q21.2) MUTATED DEL PEAK 30(18Q21.2) WILD-TYPE 
                            82                            213 
  DEL PEAK 30(18Q21.2) MUTATED DEL PEAK 30(18Q21.2) WILD-TYPE 
                            82                            213 
[1] "DEL PEAK 31(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE 
                           105                            190 
  DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE 
                           105                            190 
[1] "DEL PEAK 32(19Q13.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(19Q13.33) MUTATED DEL PEAK 32(19Q13.33) WILD-TYPE 
                             38                             257 
  DEL PEAK 32(19Q13.33) MUTATED DEL PEAK 32(19Q13.33) WILD-TYPE 
                             38                             257 
[1] "DEL PEAK 33(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE 
                            36                            259 
  DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE 
                            36                            259 
[1] "DEL PEAK 34(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE 
                            58                            237 
  DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE 
                            58                            237 
[1] "DEL PEAK 35(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(22Q13.32) MUTATED DEL PEAK 35(22Q13.32) WILD-TYPE 
                             87                             208 
  DEL PEAK 35(22Q13.32) MUTATED DEL PEAK 35(22Q13.32) WILD-TYPE 
                             87                             208 
[1] "DEL PEAK 36(XP11.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(XP11.3) MUTATED DEL PEAK 36(XP11.3) WILD-TYPE 
                           72                           223 
  DEL PEAK 36(XP11.3) MUTATED DEL PEAK 36(XP11.3) WILD-TYPE 
                           72                           223 
[1] "DEL PEAK 37(XQ21.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(XQ21.33) MUTATED DEL PEAK 37(XQ21.33) WILD-TYPE 
                            59                            236 
  DEL PEAK 37(XQ21.33) MUTATED DEL PEAK 37(XQ21.33) WILD-TYPE 
                            59                            236 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 295 columns.

Variable 1:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 295 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P31.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P31.3) MUTATED        3     38     34      6     15
  AMP PEAK  1(1P31.3) WILD-TYPE     12     74     22     53     38
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           3                            12
  CLUS_2                          38                            74
  CLUS_3                          34                            22
  CLUS_4                           6                            53
  CLUS_5                          15                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P31.3) MUTATED       19     41     36
  AMP PEAK  1(1P31.3) WILD-TYPE     53     74     72
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          19                            53
  CLUS_2                          41                            74
  CLUS_3                          36                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P31.3) MUTATED       23     13     18
  AMP PEAK  1(1P31.3) WILD-TYPE     36     28     46
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          23                            36
  CLUS_2                          13                            28
  CLUS_3                          18                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P31.3) MUTATED       12     12     15      8      7
  AMP PEAK  1(1P31.3) WILD-TYPE     20     35     30     15     10
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          12                            20
  CLUS_2                          12                            35
  CLUS_3                          15                            30
  CLUS_4                           8                            15
  CLUS_5                           7                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P31.3) MUTATED       20     42     17     16
  AMP PEAK  1(1P31.3) WILD-TYPE     37     56     52     52
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          20                            37
  CLUS_2                          42                            56
  CLUS_3                          17                            52
  CLUS_4                          16                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P31.3) MUTATED       15     74      6
  AMP PEAK  1(1P31.3) WILD-TYPE     57    111     29
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          15                            57
  CLUS_2                          74                           111
  CLUS_3                           6                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P31.3) MUTATED       37     28     31
  AMP PEAK  1(1P31.3) WILD-TYPE     68     47     84
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          37                            68
  CLUS_2                          28                            47
  CLUS_3                          31                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P31.3) MUTATED       12     36     32     10      6
  AMP PEAK  1(1P31.3) WILD-TYPE     48     59     40     15     37
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          12                            48
  CLUS_2                          36                            59
  CLUS_3                          32                            40
  CLUS_4                          10                            15
  CLUS_5                           6                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P31.3) MUTATED       33     28     27
  AMP PEAK  1(1P31.3) WILD-TYPE     68     51     75
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          33                            68
  CLUS_2                          28                            51
  CLUS_3                          27                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P31.3) MUTATED        8     31     33     10      6
  AMP PEAK  1(1P31.3) WILD-TYPE     21     48     66     32     27
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           8                            21
  CLUS_2                          31                            48
  CLUS_3                          33                            66
  CLUS_4                          10                            32
  CLUS_5                           6                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED        7     67     44     16     24
  AMP PEAK  2(1Q21.3) WILD-TYPE      8     45     12     43     29
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                           7                             8
  CLUS_2                          67                            45
  CLUS_3                          44                            12
  CLUS_4                          16                            43
  CLUS_5                          24                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       34     63     61
  AMP PEAK  2(1Q21.3) WILD-TYPE     38     52     47
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          34                            38
  CLUS_2                          63                            52
  CLUS_3                          61                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       33     25     29
  AMP PEAK  2(1Q21.3) WILD-TYPE     26     16     35
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          33                            26
  CLUS_2                          25                            16
  CLUS_3                          29                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       14     21     27     13     12
  AMP PEAK  2(1Q21.3) WILD-TYPE     18     26     18     10      5
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          14                            18
  CLUS_2                          21                            26
  CLUS_3                          27                            18
  CLUS_4                          13                            10
  CLUS_5                          12                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       31     63     32     30
  AMP PEAK  2(1Q21.3) WILD-TYPE     26     35     37     38
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          31                            26
  CLUS_2                          63                            35
  CLUS_3                          32                            37
  CLUS_4                          30                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       29    111     16
  AMP PEAK  2(1Q21.3) WILD-TYPE     43     74     19
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          29                            43
  CLUS_2                         111                            74
  CLUS_3                          16                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       54     43     61
  AMP PEAK  2(1Q21.3) WILD-TYPE     51     32     54
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          54                            51
  CLUS_2                          43                            32
  CLUS_3                          61                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       23     62     42     16     15
  AMP PEAK  2(1Q21.3) WILD-TYPE     37     33     30      9     28
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          23                            37
  CLUS_2                          62                            33
  CLUS_3                          42                            30
  CLUS_4                          16                             9
  CLUS_5                          15                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       53     46     51
  AMP PEAK  2(1Q21.3) WILD-TYPE     48     33     51
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          53                            48
  CLUS_2                          46                            33
  CLUS_3                          51                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       14     46     62     16     12
  AMP PEAK  2(1Q21.3) WILD-TYPE     15     33     37     26     21
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          14                            15
  CLUS_2                          46                            33
  CLUS_3                          62                            37
  CLUS_4                          16                            26
  CLUS_5                          12                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(2P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(2P24.3) MUTATED        1     50      9      8     11
  AMP PEAK  3(2P24.3) WILD-TYPE     14     62     47     51     42
D3V1, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                          50                            62
  CLUS_3                           9                            47
  CLUS_4                           8                            51
  CLUS_5                          11                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED       23     28     28
  AMP PEAK  3(2P24.3) WILD-TYPE     49     87     80
D3V2, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          23                            49
  CLUS_2                          28                            87
  CLUS_3                          28                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED       17      7     20
  AMP PEAK  3(2P24.3) WILD-TYPE     42     34     44
D3V3, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          17                            42
  CLUS_2                           7                            34
  CLUS_3                          20                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(2P24.3) MUTATED        4     14     11      6      9
  AMP PEAK  3(2P24.3) WILD-TYPE     28     33     34     17      8
D3V4, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           4                            28
  CLUS_2                          14                            33
  CLUS_3                          11                            34
  CLUS_4                           6                            17
  CLUS_5                           9                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED       18     18     23     20
  AMP PEAK  3(2P24.3) WILD-TYPE     39     80     46     48
D3V5, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          18                            39
  CLUS_2                          18                            80
  CLUS_3                          23                            46
  CLUS_4                          20                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED       25     41     13
  AMP PEAK  3(2P24.3) WILD-TYPE     47    144     22
D3V6, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          25                            47
  CLUS_2                          41                           144
  CLUS_3                          13                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED       30     13     36
  AMP PEAK  3(2P24.3) WILD-TYPE     75     62     79
D3V7, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          30                            75
  CLUS_2                          13                            62
  CLUS_3                          36                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(2P24.3) MUTATED       21     26      6     13     13
  AMP PEAK  3(2P24.3) WILD-TYPE     39     69     66     12     30
D3V8, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          21                            39
  CLUS_2                          26                            69
  CLUS_3                           6                            66
  CLUS_4                          13                            12
  CLUS_5                          13                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED       34     14     29
  AMP PEAK  3(2P24.3) WILD-TYPE     67     65     73
D3V9, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          34                            67
  CLUS_2                          14                            65
  CLUS_3                          29                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(2P24.3) MUTATED        9     13     32     11     12
  AMP PEAK  3(2P24.3) WILD-TYPE     20     66     67     31     21
D3V10, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           9                            20
  CLUS_2                          13                            66
  CLUS_3                          32                            67
  CLUS_4                          11                            31
  CLUS_5                          12                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(2Q33.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2Q33.1) MUTATED        0     32      2      3      4
  AMP PEAK  4(2Q33.1) WILD-TYPE     15     80     54     56     49
D4V1, multiclass
        clus
vv       AMP PEAK  4(2Q33.1) MUTATED AMP PEAK  4(2Q33.1) WILD-TYPE
  CLUS_1                           0                            15
  CLUS_2                          32                            80
  CLUS_3                           2                            54
  CLUS_4                           3                            56
  CLUS_5                           4                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2Q33.1) MUTATED       13     11     17
  AMP PEAK  4(2Q33.1) WILD-TYPE     59    104     91
D4V2, multiclass
        clus
vv       AMP PEAK  4(2Q33.1) MUTATED AMP PEAK  4(2Q33.1) WILD-TYPE
  CLUS_1                          13                            59
  CLUS_2                          11                           104
  CLUS_3                          17                            91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2Q33.1) MUTATED        7     10      8
  AMP PEAK  4(2Q33.1) WILD-TYPE     52     31     56
D4V3, multiclass
        clus
vv       AMP PEAK  4(2Q33.1) MUTATED AMP PEAK  4(2Q33.1) WILD-TYPE
  CLUS_1                           7                            52
  CLUS_2                          10                            31
  CLUS_3                           8                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2Q33.1) MUTATED        3      5      8      5      4
  AMP PEAK  4(2Q33.1) WILD-TYPE     29     42     37     18     13
D4V4, multiclass
        clus
vv       AMP PEAK  4(2Q33.1) MUTATED AMP PEAK  4(2Q33.1) WILD-TYPE
  CLUS_1                           3                            29
  CLUS_2                           5                            42
  CLUS_3                           8                            37
  CLUS_4                           5                            18
  CLUS_5                           4                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2Q33.1) MUTATED       12      3     10     15
  AMP PEAK  4(2Q33.1) WILD-TYPE     45     95     59     53
D4V5, multiclass
        clus
vv       AMP PEAK  4(2Q33.1) MUTATED AMP PEAK  4(2Q33.1) WILD-TYPE
  CLUS_1                          12                            45
  CLUS_2                           3                            95
  CLUS_3                          10                            59
  CLUS_4                          15                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2Q33.1) MUTATED       13     19      8
  AMP PEAK  4(2Q33.1) WILD-TYPE     59    166     27
D4V6, multiclass
        clus
vv       AMP PEAK  4(2Q33.1) MUTATED AMP PEAK  4(2Q33.1) WILD-TYPE
  CLUS_1                          13                            59
  CLUS_2                          19                           166
  CLUS_3                           8                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2Q33.1) MUTATED       17      7     17
  AMP PEAK  4(2Q33.1) WILD-TYPE     88     68     98
D4V7, multiclass
        clus
vv       AMP PEAK  4(2Q33.1) MUTATED AMP PEAK  4(2Q33.1) WILD-TYPE
  CLUS_1                          17                            88
  CLUS_2                           7                            68
  CLUS_3                          17                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2Q33.1) MUTATED       12     10      4      3     12
  AMP PEAK  4(2Q33.1) WILD-TYPE     48     85     68     22     31
D4V8, multiclass
        clus
vv       AMP PEAK  4(2Q33.1) MUTATED AMP PEAK  4(2Q33.1) WILD-TYPE
  CLUS_1                          12                            48
  CLUS_2                          10                            85
  CLUS_3                           4                            68
  CLUS_4                           3                            22
  CLUS_5                          12                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2Q33.1) MUTATED       19      8     14
  AMP PEAK  4(2Q33.1) WILD-TYPE     82     71     88
D4V9, multiclass
        clus
vv       AMP PEAK  4(2Q33.1) MUTATED AMP PEAK  4(2Q33.1) WILD-TYPE
  CLUS_1                          19                            82
  CLUS_2                           8                            71
  CLUS_3                          14                            88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2Q33.1) MUTATED        3      7     15      9      7
  AMP PEAK  4(2Q33.1) WILD-TYPE     26     72     84     33     26
D4V10, multiclass
        clus
vv       AMP PEAK  4(2Q33.1) MUTATED AMP PEAK  4(2Q33.1) WILD-TYPE
  CLUS_1                           3                            26
  CLUS_2                           7                            72
  CLUS_3                          15                            84
  CLUS_4                           9                            33
  CLUS_5                           7                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(3Q26.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.31) MUTATED        9     96     51     33     38
  AMP PEAK  5(3Q26.31) WILD-TYPE      6     16      5     26     15
D5V1, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                            9                              6
  CLUS_2                           96                             16
  CLUS_3                           51                              5
  CLUS_4                           33                             26
  CLUS_5                           38                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.31) MUTATED       48    100     79
  AMP PEAK  5(3Q26.31) WILD-TYPE     24     15     29
D5V2, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           48                             24
  CLUS_2                          100                             15
  CLUS_3                           79                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.31) MUTATED       49     33     48
  AMP PEAK  5(3Q26.31) WILD-TYPE     10      8     16
D5V3, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           49                             10
  CLUS_2                           33                              8
  CLUS_3                           48                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.31) MUTATED       27     36     36     17     14
  AMP PEAK  5(3Q26.31) WILD-TYPE      5     11      9      6      3
D5V4, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           27                              5
  CLUS_2                           36                             11
  CLUS_3                           36                              9
  CLUS_4                           17                              6
  CLUS_5                           14                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3Q26.31) MUTATED       48     86     46     44
  AMP PEAK  5(3Q26.31) WILD-TYPE      9     12     23     24
D5V5, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           48                              9
  CLUS_2                           86                             12
  CLUS_3                           46                             23
  CLUS_4                           44                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.31) MUTATED       43    160     21
  AMP PEAK  5(3Q26.31) WILD-TYPE     29     25     14
D5V6, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           43                             29
  CLUS_2                          160                             25
  CLUS_3                           21                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.31) MUTATED       77     64     86
  AMP PEAK  5(3Q26.31) WILD-TYPE     28     11     29
D5V7, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           77                             28
  CLUS_2                           64                             11
  CLUS_3                           86                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.31) MUTATED       34     81     65     20     27
  AMP PEAK  5(3Q26.31) WILD-TYPE     26     14      7      5     16
D5V8, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           34                             26
  CLUS_2                           81                             14
  CLUS_3                           65                              7
  CLUS_4                           20                              5
  CLUS_5                           27                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.31) MUTATED       69     66     81
  AMP PEAK  5(3Q26.31) WILD-TYPE     32     13     21
D5V9, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           69                             32
  CLUS_2                           66                             13
  CLUS_3                           81                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.31) MUTATED       17     70     87     22     20
  AMP PEAK  5(3Q26.31) WILD-TYPE     12      9     12     20     13
D5V10, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           17                             12
  CLUS_2                           70                              9
  CLUS_3                           87                             12
  CLUS_4                           22                             20
  CLUS_5                           20                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4Q12) MUTATED        0      5      4      4      8
  AMP PEAK  6(4Q12) WILD-TYPE     15    107     52     55     45
D6V1, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                         0                          15
  CLUS_2                         5                         107
  CLUS_3                         4                          52
  CLUS_4                         4                          55
  CLUS_5                         8                          45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q12) MUTATED        7      9      5
  AMP PEAK  6(4Q12) WILD-TYPE     65    106    103
D6V2, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                         7                          65
  CLUS_2                         9                         106
  CLUS_3                         5                         103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q12) MUTATED        3      0     11
  AMP PEAK  6(4Q12) WILD-TYPE     56     41     53
D6V3, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                         3                          56
  CLUS_2                         0                          41
  CLUS_3                        11                          53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4Q12) MUTATED        1      5      5      3      0
  AMP PEAK  6(4Q12) WILD-TYPE     31     42     40     20     17
D6V4, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                         1                          31
  CLUS_2                         5                          42
  CLUS_3                         5                          40
  CLUS_4                         3                          20
  CLUS_5                         0                          17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4Q12) MUTATED        7      4      6      4
  AMP PEAK  6(4Q12) WILD-TYPE     50     94     63     64
D6V5, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                         7                          50
  CLUS_2                         4                          94
  CLUS_3                         6                          63
  CLUS_4                         4                          64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q12) MUTATED        5     13      3
  AMP PEAK  6(4Q12) WILD-TYPE     67    172     32
D6V6, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                         5                          67
  CLUS_2                        13                         172
  CLUS_3                         3                          32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q12) MUTATED        7      5      9
  AMP PEAK  6(4Q12) WILD-TYPE     98     70    106
D6V7, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                         7                          98
  CLUS_2                         5                          70
  CLUS_3                         9                         106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4Q12) MUTATED        4      9      2      3      3
  AMP PEAK  6(4Q12) WILD-TYPE     56     86     70     22     40
D6V8, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                         4                          56
  CLUS_2                         9                          86
  CLUS_3                         2                          70
  CLUS_4                         3                          22
  CLUS_5                         3                          40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q12) MUTATED       12      3      6
  AMP PEAK  6(4Q12) WILD-TYPE     89     76     96
D6V9, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        12                          89
  CLUS_2                         3                          76
  CLUS_3                         6                          96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4Q12) MUTATED        2      2     13      3      1
  AMP PEAK  6(4Q12) WILD-TYPE     27     77     86     39     32
D6V10, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                         2                          27
  CLUS_2                         2                          77
  CLUS_3                        13                          86
  CLUS_4                         3                          39
  CLUS_5                         1                          32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED        6     82     30     10     10
  AMP PEAK  7(5P15.33) WILD-TYPE      9     30     26     49     43
D7V1, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            6                              9
  CLUS_2                           82                             30
  CLUS_3                           30                             26
  CLUS_4                           10                             49
  CLUS_5                           10                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       24     59     55
  AMP PEAK  7(5P15.33) WILD-TYPE     48     56     53
D7V2, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           24                             48
  CLUS_2                           59                             56
  CLUS_3                           55                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       28     23     25
  AMP PEAK  7(5P15.33) WILD-TYPE     31     18     39
D7V3, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           28                             31
  CLUS_2                           23                             18
  CLUS_3                           25                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       13     18     25     10     10
  AMP PEAK  7(5P15.33) WILD-TYPE     19     29     20     13      7
D7V4, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           13                             19
  CLUS_2                           18                             29
  CLUS_3                           25                             20
  CLUS_4                           10                             13
  CLUS_5                           10                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P15.33) MUTATED       23     48     23     42
  AMP PEAK  7(5P15.33) WILD-TYPE     34     50     46     26
D7V5, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           23                             34
  CLUS_2                           48                             50
  CLUS_3                           23                             46
  CLUS_4                           42                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       24     89     23
  AMP PEAK  7(5P15.33) WILD-TYPE     48     96     12
D7V6, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           24                             48
  CLUS_2                           89                             96
  CLUS_3                           23                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       43     27     68
  AMP PEAK  7(5P15.33) WILD-TYPE     62     48     47
D7V7, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           43                             62
  CLUS_2                           27                             48
  CLUS_3                           68                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       17     50     28     16     27
  AMP PEAK  7(5P15.33) WILD-TYPE     43     45     44      9     16
D7V8, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           17                             43
  CLUS_2                           50                             45
  CLUS_3                           28                             44
  CLUS_4                           16                              9
  CLUS_5                           27                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       46     26     59
  AMP PEAK  7(5P15.33) WILD-TYPE     55     53     43
D7V9, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           46                             55
  CLUS_2                           26                             53
  CLUS_3                           59                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       12     32     47     29     11
  AMP PEAK  7(5P15.33) WILD-TYPE     17     47     52     13     22
D7V10, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           12                             17
  CLUS_2                           32                             47
  CLUS_3                           47                             52
  CLUS_4                           29                             13
  CLUS_5                           11                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(6P21.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P21.33) MUTATED        1     48     10     13     10
  AMP PEAK  8(6P21.33) WILD-TYPE     14     64     46     46     43
D8V1, multiclass
        clus
vv       AMP PEAK  8(6P21.33) MUTATED AMP PEAK  8(6P21.33) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                           48                             64
  CLUS_3                           10                             46
  CLUS_4                           13                             46
  CLUS_5                           10                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.33) MUTATED       23     27     32
  AMP PEAK  8(6P21.33) WILD-TYPE     49     88     76
D8V2, multiclass
        clus
vv       AMP PEAK  8(6P21.33) MUTATED AMP PEAK  8(6P21.33) WILD-TYPE
  CLUS_1                           23                             49
  CLUS_2                           27                             88
  CLUS_3                           32                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.33) MUTATED       19      9     17
  AMP PEAK  8(6P21.33) WILD-TYPE     40     32     47
D8V3, multiclass
        clus
vv       AMP PEAK  8(6P21.33) MUTATED AMP PEAK  8(6P21.33) WILD-TYPE
  CLUS_1                           19                             40
  CLUS_2                            9                             32
  CLUS_3                           17                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P21.33) MUTATED        9      9      9     10      8
  AMP PEAK  8(6P21.33) WILD-TYPE     23     38     36     13      9
D8V4, multiclass
        clus
vv       AMP PEAK  8(6P21.33) MUTATED AMP PEAK  8(6P21.33) WILD-TYPE
  CLUS_1                            9                             23
  CLUS_2                            9                             38
  CLUS_3                            9                             36
  CLUS_4                           10                             13
  CLUS_5                            8                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P21.33) MUTATED       18     17     21     26
  AMP PEAK  8(6P21.33) WILD-TYPE     39     81     48     42
D8V5, multiclass
        clus
vv       AMP PEAK  8(6P21.33) MUTATED AMP PEAK  8(6P21.33) WILD-TYPE
  CLUS_1                           18                             39
  CLUS_2                           17                             81
  CLUS_3                           21                             48
  CLUS_4                           26                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.33) MUTATED       22     46     14
  AMP PEAK  8(6P21.33) WILD-TYPE     50    139     21
D8V6, multiclass
        clus
vv       AMP PEAK  8(6P21.33) MUTATED AMP PEAK  8(6P21.33) WILD-TYPE
  CLUS_1                           22                             50
  CLUS_2                           46                            139
  CLUS_3                           14                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.33) MUTATED       29     19     34
  AMP PEAK  8(6P21.33) WILD-TYPE     76     56     81
D8V7, multiclass
        clus
vv       AMP PEAK  8(6P21.33) MUTATED AMP PEAK  8(6P21.33) WILD-TYPE
  CLUS_1                           29                             76
  CLUS_2                           19                             56
  CLUS_3                           34                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P21.33) MUTATED       17     21     15      8     21
  AMP PEAK  8(6P21.33) WILD-TYPE     43     74     57     17     22
D8V8, multiclass
        clus
vv       AMP PEAK  8(6P21.33) MUTATED AMP PEAK  8(6P21.33) WILD-TYPE
  CLUS_1                           17                             43
  CLUS_2                           21                             74
  CLUS_3                           15                             57
  CLUS_4                            8                             17
  CLUS_5                           21                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.33) MUTATED       30     17     31
  AMP PEAK  8(6P21.33) WILD-TYPE     71     62     71
D8V9, multiclass
        clus
vv       AMP PEAK  8(6P21.33) MUTATED AMP PEAK  8(6P21.33) WILD-TYPE
  CLUS_1                           30                             71
  CLUS_2                           17                             62
  CLUS_3                           31                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P21.33) MUTATED       10     15     26     18      9
  AMP PEAK  8(6P21.33) WILD-TYPE     19     64     73     24     24
D8V10, multiclass
        clus
vv       AMP PEAK  8(6P21.33) MUTATED AMP PEAK  8(6P21.33) WILD-TYPE
  CLUS_1                           10                             19
  CLUS_2                           15                             64
  CLUS_3                           26                             73
  CLUS_4                           18                             24
  CLUS_5                            9                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(7P11.2) MUTATED        3     29     10      0     10
  AMP PEAK  9(7P11.2) WILD-TYPE     12     83     46     59     43
D9V1, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                           3                            12
  CLUS_2                          29                            83
  CLUS_3                          10                            46
  CLUS_4                           0                            59
  CLUS_5                          10                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7P11.2) MUTATED        5     23     24
  AMP PEAK  9(7P11.2) WILD-TYPE     67     92     84
D9V2, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                           5                            67
  CLUS_2                          23                            92
  CLUS_3                          24                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7P11.2) MUTATED       16      4      7
  AMP PEAK  9(7P11.2) WILD-TYPE     43     37     57
D9V3, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                          16                            43
  CLUS_2                           4                            37
  CLUS_3                           7                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(7P11.2) MUTATED        5      4      7     10      1
  AMP PEAK  9(7P11.2) WILD-TYPE     27     43     38     13     16
D9V4, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                           5                            27
  CLUS_2                           4                            43
  CLUS_3                           7                            38
  CLUS_4                          10                            13
  CLUS_5                           1                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(7P11.2) MUTATED        9     16      7     20
  AMP PEAK  9(7P11.2) WILD-TYPE     48     82     62     48
D9V5, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                           9                            48
  CLUS_2                          16                            82
  CLUS_3                           7                            62
  CLUS_4                          20                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7P11.2) MUTATED        7     36      9
  AMP PEAK  9(7P11.2) WILD-TYPE     65    149     26
D9V6, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                           7                            65
  CLUS_2                          36                           149
  CLUS_3                           9                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7P11.2) MUTATED       13      6     33
  AMP PEAK  9(7P11.2) WILD-TYPE     92     69     82
D9V7, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                          13                            92
  CLUS_2                           6                            69
  CLUS_3                          33                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(7P11.2) MUTATED        6     19      9      6     12
  AMP PEAK  9(7P11.2) WILD-TYPE     54     76     63     19     31
D9V8, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                           6                            54
  CLUS_2                          19                            76
  CLUS_3                           9                            63
  CLUS_4                           6                            19
  CLUS_5                          12                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7P11.2) MUTATED       12      6     31
  AMP PEAK  9(7P11.2) WILD-TYPE     89     73     71
D9V9, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                          12                            89
  CLUS_2                           6                            73
  CLUS_3                          31                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(7P11.2) MUTATED        3      9     24      9      4
  AMP PEAK  9(7P11.2) WILD-TYPE     26     70     75     33     29
D9V10, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                           3                            26
  CLUS_2                           9                            70
  CLUS_3                          24                            75
  CLUS_4                           9                            33
  CLUS_5                           4                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8Q24.21) MUTATED        7     53     28     19     20
  AMP PEAK 10(8Q24.21) WILD-TYPE      8     59     28     40     33
D10V1, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                            7                              8
  CLUS_2                           53                             59
  CLUS_3                           28                             28
  CLUS_4                           19                             40
  CLUS_5                           20                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q24.21) MUTATED       20     63     44
  AMP PEAK 10(8Q24.21) WILD-TYPE     52     52     64
D10V2, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           20                             52
  CLUS_2                           63                             52
  CLUS_3                           44                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q24.21) MUTATED       22     17     36
  AMP PEAK 10(8Q24.21) WILD-TYPE     37     24     28
D10V3, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           22                             37
  CLUS_2                           17                             24
  CLUS_3                           36                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8Q24.21) MUTATED       10     23     24     13      5
  AMP PEAK 10(8Q24.21) WILD-TYPE     22     24     21     10     12
D10V4, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           10                             22
  CLUS_2                           23                             24
  CLUS_3                           24                             21
  CLUS_4                           13                             10
  CLUS_5                            5                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(8Q24.21) MUTATED       25     45     24     32
  AMP PEAK 10(8Q24.21) WILD-TYPE     32     53     45     36
D10V5, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           25                             32
  CLUS_2                           45                             53
  CLUS_3                           24                             45
  CLUS_4                           32                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q24.21) MUTATED       23     90     13
  AMP PEAK 10(8Q24.21) WILD-TYPE     49     95     22
D10V6, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           23                             49
  CLUS_2                           90                             95
  CLUS_3                           13                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q24.21) MUTATED       42     27     58
  AMP PEAK 10(8Q24.21) WILD-TYPE     63     48     57
D10V7, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           42                             63
  CLUS_2                           27                             48
  CLUS_3                           58                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8Q24.21) MUTATED       21     50     29      7     20
  AMP PEAK 10(8Q24.21) WILD-TYPE     39     45     43     18     23
D10V8, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           21                             39
  CLUS_2                           50                             45
  CLUS_3                           29                             43
  CLUS_4                            7                             18
  CLUS_5                           20                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8Q24.21) MUTATED       45     27     50
  AMP PEAK 10(8Q24.21) WILD-TYPE     56     52     52
D10V9, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           45                             56
  CLUS_2                           27                             52
  CLUS_3                           50                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8Q24.21) MUTATED        9     29     54     21      9
  AMP PEAK 10(8Q24.21) WILD-TYPE     20     50     45     21     24
D10V10, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                            9                             20
  CLUS_2                           29                             50
  CLUS_3                           54                             45
  CLUS_4                           21                             21
  CLUS_5                            9                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(9P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(9P24.1) MUTATED        1     26     23      6      7
  AMP PEAK 11(9P24.1) WILD-TYPE     14     86     33     53     46
D11V1, multiclass
        clus
vv       AMP PEAK 11(9P24.1) MUTATED AMP PEAK 11(9P24.1) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                          26                            86
  CLUS_3                          23                            33
  CLUS_4                           6                            53
  CLUS_5                           7                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(9P24.1) MUTATED       11     27     25
  AMP PEAK 11(9P24.1) WILD-TYPE     61     88     83
D11V2, multiclass
        clus
vv       AMP PEAK 11(9P24.1) MUTATED AMP PEAK 11(9P24.1) WILD-TYPE
  CLUS_1                          11                            61
  CLUS_2                          27                            88
  CLUS_3                          25                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(9P24.1) MUTATED        8      8     19
  AMP PEAK 11(9P24.1) WILD-TYPE     51     33     45
D11V3, multiclass
        clus
vv       AMP PEAK 11(9P24.1) MUTATED AMP PEAK 11(9P24.1) WILD-TYPE
  CLUS_1                           8                            51
  CLUS_2                           8                            33
  CLUS_3                          19                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(9P24.1) MUTATED        3     12     15      5      0
  AMP PEAK 11(9P24.1) WILD-TYPE     29     35     30     18     17
D11V4, multiclass
        clus
vv       AMP PEAK 11(9P24.1) MUTATED AMP PEAK 11(9P24.1) WILD-TYPE
  CLUS_1                           3                            29
  CLUS_2                          12                            35
  CLUS_3                          15                            30
  CLUS_4                           5                            18
  CLUS_5                           0                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(9P24.1) MUTATED       13     22     10     18
  AMP PEAK 11(9P24.1) WILD-TYPE     44     76     59     50
D11V5, multiclass
        clus
vv       AMP PEAK 11(9P24.1) MUTATED AMP PEAK 11(9P24.1) WILD-TYPE
  CLUS_1                          13                            44
  CLUS_2                          22                            76
  CLUS_3                          10                            59
  CLUS_4                          18                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(9P24.1) MUTATED        9     42     12
  AMP PEAK 11(9P24.1) WILD-TYPE     63    143     23
D11V6, multiclass
        clus
vv       AMP PEAK 11(9P24.1) MUTATED AMP PEAK 11(9P24.1) WILD-TYPE
  CLUS_1                           9                            63
  CLUS_2                          42                           143
  CLUS_3                          12                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(9P24.1) MUTATED       19     16     28
  AMP PEAK 11(9P24.1) WILD-TYPE     86     59     87
D11V7, multiclass
        clus
vv       AMP PEAK 11(9P24.1) MUTATED AMP PEAK 11(9P24.1) WILD-TYPE
  CLUS_1                          19                            86
  CLUS_2                          16                            59
  CLUS_3                          28                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(9P24.1) MUTATED        8     18     20      3     14
  AMP PEAK 11(9P24.1) WILD-TYPE     52     77     52     22     29
D11V8, multiclass
        clus
vv       AMP PEAK 11(9P24.1) MUTATED AMP PEAK 11(9P24.1) WILD-TYPE
  CLUS_1                           8                            52
  CLUS_2                          18                            77
  CLUS_3                          20                            52
  CLUS_4                           3                            22
  CLUS_5                          14                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(9P24.1) MUTATED       19     14     26
  AMP PEAK 11(9P24.1) WILD-TYPE     82     65     76
D11V9, multiclass
        clus
vv       AMP PEAK 11(9P24.1) MUTATED AMP PEAK 11(9P24.1) WILD-TYPE
  CLUS_1                          19                            82
  CLUS_2                          14                            65
  CLUS_3                          26                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(9P24.1) MUTATED        3     15     22     14      5
  AMP PEAK 11(9P24.1) WILD-TYPE     26     64     77     28     28
D11V10, multiclass
        clus
vv       AMP PEAK 11(9P24.1) MUTATED AMP PEAK 11(9P24.1) WILD-TYPE
  CLUS_1                           3                            26
  CLUS_2                          15                            64
  CLUS_3                          22                            77
  CLUS_4                          14                            28
  CLUS_5                           5                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(11P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(11P12) MUTATED        1     14      2      2      4
  AMP PEAK 12(11P12) WILD-TYPE     14     98     54     57     49
D12V1, multiclass
        clus
vv       AMP PEAK 12(11P12) MUTATED AMP PEAK 12(11P12) WILD-TYPE
  CLUS_1                          1                           14
  CLUS_2                         14                           98
  CLUS_3                          2                           54
  CLUS_4                          2                           57
  CLUS_5                          4                           49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(11P12) MUTATED        5      8     10
  AMP PEAK 12(11P12) WILD-TYPE     67    107     98
D12V2, multiclass
        clus
vv       AMP PEAK 12(11P12) MUTATED AMP PEAK 12(11P12) WILD-TYPE
  CLUS_1                          5                           67
  CLUS_2                          8                          107
  CLUS_3                         10                           98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(11P12) MUTATED        5      3      3
  AMP PEAK 12(11P12) WILD-TYPE     54     38     61
D12V3, multiclass
        clus
vv       AMP PEAK 12(11P12) MUTATED AMP PEAK 12(11P12) WILD-TYPE
  CLUS_1                          5                           54
  CLUS_2                          3                           38
  CLUS_3                          3                           61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(11P12) MUTATED        2      3      4      2      0
  AMP PEAK 12(11P12) WILD-TYPE     30     44     41     21     17
D12V4, multiclass
        clus
vv       AMP PEAK 12(11P12) MUTATED AMP PEAK 12(11P12) WILD-TYPE
  CLUS_1                          2                           30
  CLUS_2                          3                           44
  CLUS_3                          4                           41
  CLUS_4                          2                           21
  CLUS_5                          0                           17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11P12) MUTATED        4      6      4      9
  AMP PEAK 12(11P12) WILD-TYPE     53     92     65     59
D12V5, multiclass
        clus
vv       AMP PEAK 12(11P12) MUTATED AMP PEAK 12(11P12) WILD-TYPE
  CLUS_1                          4                           53
  CLUS_2                          6                           92
  CLUS_3                          4                           65
  CLUS_4                          9                           59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(11P12) MUTATED        5     13      5
  AMP PEAK 12(11P12) WILD-TYPE     67    172     30
D12V6, multiclass
        clus
vv       AMP PEAK 12(11P12) MUTATED AMP PEAK 12(11P12) WILD-TYPE
  CLUS_1                          5                           67
  CLUS_2                         13                          172
  CLUS_3                          5                           30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(11P12) MUTATED        8      4     11
  AMP PEAK 12(11P12) WILD-TYPE     97     71    104
D12V7, multiclass
        clus
vv       AMP PEAK 12(11P12) MUTATED AMP PEAK 12(11P12) WILD-TYPE
  CLUS_1                          8                           97
  CLUS_2                          4                           71
  CLUS_3                         11                          104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(11P12) MUTATED        3      5      4      3      8
  AMP PEAK 12(11P12) WILD-TYPE     57     90     68     22     35
D12V8, multiclass
        clus
vv       AMP PEAK 12(11P12) MUTATED AMP PEAK 12(11P12) WILD-TYPE
  CLUS_1                          3                           57
  CLUS_2                          5                           90
  CLUS_3                          4                           68
  CLUS_4                          3                           22
  CLUS_5                          8                           35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(11P12) MUTATED        8      3     11
  AMP PEAK 12(11P12) WILD-TYPE     93     76     91
D12V9, multiclass
        clus
vv       AMP PEAK 12(11P12) MUTATED AMP PEAK 12(11P12) WILD-TYPE
  CLUS_1                          8                           93
  CLUS_2                          3                           76
  CLUS_3                         11                           91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(11P12) MUTATED        1      4     11      4      2
  AMP PEAK 12(11P12) WILD-TYPE     28     75     88     38     31
D12V10, multiclass
        clus
vv       AMP PEAK 12(11P12) MUTATED AMP PEAK 12(11P12) WILD-TYPE
  CLUS_1                          1                           28
  CLUS_2                          4                           75
  CLUS_3                         11                           88
  CLUS_4                          4                           38
  CLUS_5                          2                           31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(11Q13.3) MUTATED        0     29      2      3      7
  AMP PEAK 13(11Q13.3) WILD-TYPE     15     83     54     56     46
D13V1, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                            0                             15
  CLUS_2                           29                             83
  CLUS_3                            2                             54
  CLUS_4                            3                             56
  CLUS_5                            7                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q13.3) MUTATED        8     18     15
  AMP PEAK 13(11Q13.3) WILD-TYPE     64     97     93
D13V2, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                            8                             64
  CLUS_2                           18                             97
  CLUS_3                           15                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q13.3) MUTATED       14      3      8
  AMP PEAK 13(11Q13.3) WILD-TYPE     45     38     56
D13V3, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                           14                             45
  CLUS_2                            3                             38
  CLUS_3                            8                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(11Q13.3) MUTATED        6      5      6      8      0
  AMP PEAK 13(11Q13.3) WILD-TYPE     26     42     39     15     17
D13V4, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                            6                             26
  CLUS_2                            5                             42
  CLUS_3                            6                             39
  CLUS_4                            8                             15
  CLUS_5                            0                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11Q13.3) MUTATED        7     10      6     17
  AMP PEAK 13(11Q13.3) WILD-TYPE     50     88     63     51
D13V5, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                            7                             50
  CLUS_2                           10                             88
  CLUS_3                            6                             63
  CLUS_4                           17                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q13.3) MUTATED        6     20     14
  AMP PEAK 13(11Q13.3) WILD-TYPE     66    165     21
D13V6, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                            6                             66
  CLUS_2                           20                            165
  CLUS_3                           14                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q13.3) MUTATED       12      6     23
  AMP PEAK 13(11Q13.3) WILD-TYPE     93     69     92
D13V7, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                           12                             93
  CLUS_2                            6                             69
  CLUS_3                           23                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(11Q13.3) MUTATED        3     10      5      6     17
  AMP PEAK 13(11Q13.3) WILD-TYPE     57     85     67     19     26
D13V8, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                            3                             57
  CLUS_2                           10                             85
  CLUS_3                            5                             67
  CLUS_4                            6                             19
  CLUS_5                           17                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q13.3) MUTATED       10      4     25
  AMP PEAK 13(11Q13.3) WILD-TYPE     91     75     77
D13V9, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                           10                             91
  CLUS_2                            4                             75
  CLUS_3                           25                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(11Q13.3) MUTATED        3      9     14     11      2
  AMP PEAK 13(11Q13.3) WILD-TYPE     26     70     85     31     31
D13V10, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                            3                             26
  CLUS_2                            9                             70
  CLUS_3                           14                             85
  CLUS_4                           11                             31
  CLUS_5                            2                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(11Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(11Q22.1) MUTATED        0     34      0      4      9
  AMP PEAK 14(11Q22.1) WILD-TYPE     15     78     56     55     44
D14V1, multiclass
        clus
vv       AMP PEAK 14(11Q22.1) MUTATED AMP PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                            0                             15
  CLUS_2                           34                             78
  CLUS_3                            0                             56
  CLUS_4                            4                             55
  CLUS_5                            9                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11Q22.1) MUTATED        4     16     27
  AMP PEAK 14(11Q22.1) WILD-TYPE     68     99     81
D14V2, multiclass
        clus
vv       AMP PEAK 14(11Q22.1) MUTATED AMP PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                            4                             68
  CLUS_2                           16                             99
  CLUS_3                           27                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11Q22.1) MUTATED       19      3      8
  AMP PEAK 14(11Q22.1) WILD-TYPE     40     38     56
D14V3, multiclass
        clus
vv       AMP PEAK 14(11Q22.1) MUTATED AMP PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                           19                             40
  CLUS_2                            3                             38
  CLUS_3                            8                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(11Q22.1) MUTATED        9      5      3     13      0
  AMP PEAK 14(11Q22.1) WILD-TYPE     23     42     42     10     17
D14V4, multiclass
        clus
vv       AMP PEAK 14(11Q22.1) MUTATED AMP PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                            9                             23
  CLUS_2                            5                             42
  CLUS_3                            3                             42
  CLUS_4                           13                             10
  CLUS_5                            0                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(11Q22.1) MUTATED        5      9      7     25
  AMP PEAK 14(11Q22.1) WILD-TYPE     52     89     62     43
D14V5, multiclass
        clus
vv       AMP PEAK 14(11Q22.1) MUTATED AMP PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                            5                             52
  CLUS_2                            9                             89
  CLUS_3                            7                             62
  CLUS_4                           25                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11Q22.1) MUTATED        4     22     20
  AMP PEAK 14(11Q22.1) WILD-TYPE     68    163     15
D14V6, multiclass
        clus
vv       AMP PEAK 14(11Q22.1) MUTATED AMP PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                            4                             68
  CLUS_2                           22                            163
  CLUS_3                           20                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11Q22.1) MUTATED        8      9     30
  AMP PEAK 14(11Q22.1) WILD-TYPE     97     66     85
D14V7, multiclass
        clus
vv       AMP PEAK 14(11Q22.1) MUTATED AMP PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                            8                             97
  CLUS_2                            9                             66
  CLUS_3                           30                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(11Q22.1) MUTATED        2      8     11      3     23
  AMP PEAK 14(11Q22.1) WILD-TYPE     58     87     61     22     20
D14V8, multiclass
        clus
vv       AMP PEAK 14(11Q22.1) MUTATED AMP PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                            2                             58
  CLUS_2                            8                             87
  CLUS_3                           11                             61
  CLUS_4                            3                             22
  CLUS_5                           23                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11Q22.1) MUTATED        7      8     30
  AMP PEAK 14(11Q22.1) WILD-TYPE     94     71     72
D14V9, multiclass
        clus
vv       AMP PEAK 14(11Q22.1) MUTATED AMP PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                            7                             94
  CLUS_2                            8                             71
  CLUS_3                           30                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(11Q22.1) MUTATED        1     12     13     17      2
  AMP PEAK 14(11Q22.1) WILD-TYPE     28     67     86     25     31
D14V10, multiclass
        clus
vv       AMP PEAK 14(11Q22.1) MUTATED AMP PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                            1                             28
  CLUS_2                           12                             67
  CLUS_3                           13                             86
  CLUS_4                           17                             25
  CLUS_5                            2                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(13Q22.1) MUTATED        3     32     14      7      9
  AMP PEAK 15(13Q22.1) WILD-TYPE     12     80     42     52     44
D15V1, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                            3                             12
  CLUS_2                           32                             80
  CLUS_3                           14                             42
  CLUS_4                            7                             52
  CLUS_5                            9                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q22.1) MUTATED       15     32     18
  AMP PEAK 15(13Q22.1) WILD-TYPE     57     83     90
D15V2, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           15                             57
  CLUS_2                           32                             83
  CLUS_3                           18                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q22.1) MUTATED       16      5     15
  AMP PEAK 15(13Q22.1) WILD-TYPE     43     36     49
D15V3, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           16                             43
  CLUS_2                            5                             36
  CLUS_3                           15                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(13Q22.1) MUTATED        6     14      7      6      3
  AMP PEAK 15(13Q22.1) WILD-TYPE     26     33     38     17     14
D15V4, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                            6                             26
  CLUS_2                           14                             33
  CLUS_3                            7                             38
  CLUS_4                            6                             17
  CLUS_5                            3                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q22.1) MUTATED        6     24     18     16
  AMP PEAK 15(13Q22.1) WILD-TYPE     51     74     51     52
D15V5, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                            6                             51
  CLUS_2                           24                             74
  CLUS_3                           18                             51
  CLUS_4                           16                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q22.1) MUTATED       15     43      6
  AMP PEAK 15(13Q22.1) WILD-TYPE     57    142     29
D15V6, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           15                             57
  CLUS_2                           43                            142
  CLUS_3                            6                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q22.1) MUTATED       25     14     26
  AMP PEAK 15(13Q22.1) WILD-TYPE     80     61     89
D15V7, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           25                             80
  CLUS_2                           14                             61
  CLUS_3                           26                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(13Q22.1) MUTATED       13     22     14      9      7
  AMP PEAK 15(13Q22.1) WILD-TYPE     47     73     58     16     36
D15V8, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           13                             47
  CLUS_2                           22                             73
  CLUS_3                           14                             58
  CLUS_4                            9                             16
  CLUS_5                            7                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q22.1) MUTATED       23     19     19
  AMP PEAK 15(13Q22.1) WILD-TYPE     78     60     83
D15V9, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           23                             78
  CLUS_2                           19                             60
  CLUS_3                           19                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(13Q22.1) MUTATED        5     12     21     13     10
  AMP PEAK 15(13Q22.1) WILD-TYPE     24     67     78     29     23
D15V10, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                            5                             24
  CLUS_2                           12                             67
  CLUS_3                           21                             78
  CLUS_4                           13                             29
  CLUS_5                           10                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(13Q34) MUTATED        3     34     12     10     10
  AMP PEAK 16(13Q34) WILD-TYPE     12     78     44     49     43
D16V1, multiclass
        clus
vv       AMP PEAK 16(13Q34) MUTATED AMP PEAK 16(13Q34) WILD-TYPE
  CLUS_1                          3                           12
  CLUS_2                         34                           78
  CLUS_3                         12                           44
  CLUS_4                         10                           49
  CLUS_5                         10                           43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(13Q34) MUTATED       16     29     24
  AMP PEAK 16(13Q34) WILD-TYPE     56     86     84
D16V2, multiclass
        clus
vv       AMP PEAK 16(13Q34) MUTATED AMP PEAK 16(13Q34) WILD-TYPE
  CLUS_1                         16                           56
  CLUS_2                         29                           86
  CLUS_3                         24                           84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(13Q34) MUTATED       15      7     16
  AMP PEAK 16(13Q34) WILD-TYPE     44     34     48
D16V3, multiclass
        clus
vv       AMP PEAK 16(13Q34) MUTATED AMP PEAK 16(13Q34) WILD-TYPE
  CLUS_1                         15                           44
  CLUS_2                          7                           34
  CLUS_3                         16                           48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(13Q34) MUTATED        7     14      7      6      4
  AMP PEAK 16(13Q34) WILD-TYPE     25     33     38     17     13
D16V4, multiclass
        clus
vv       AMP PEAK 16(13Q34) MUTATED AMP PEAK 16(13Q34) WILD-TYPE
  CLUS_1                          7                           25
  CLUS_2                         14                           33
  CLUS_3                          7                           38
  CLUS_4                          6                           17
  CLUS_5                          4                           13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(13Q34) MUTATED       12     20     19     17
  AMP PEAK 16(13Q34) WILD-TYPE     45     78     50     51
D16V5, multiclass
        clus
vv       AMP PEAK 16(13Q34) MUTATED AMP PEAK 16(13Q34) WILD-TYPE
  CLUS_1                         12                           45
  CLUS_2                         20                           78
  CLUS_3                         19                           50
  CLUS_4                         17                           51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(13Q34) MUTATED       16     46      6
  AMP PEAK 16(13Q34) WILD-TYPE     56    139     29
D16V6, multiclass
        clus
vv       AMP PEAK 16(13Q34) MUTATED AMP PEAK 16(13Q34) WILD-TYPE
  CLUS_1                         16                           56
  CLUS_2                         46                          139
  CLUS_3                          6                           29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(13Q34) MUTATED       25     15     29
  AMP PEAK 16(13Q34) WILD-TYPE     80     60     86
D16V7, multiclass
        clus
vv       AMP PEAK 16(13Q34) MUTATED AMP PEAK 16(13Q34) WILD-TYPE
  CLUS_1                         25                           80
  CLUS_2                         15                           60
  CLUS_3                         29                           86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(13Q34) MUTATED       12     24     16      8      9
  AMP PEAK 16(13Q34) WILD-TYPE     48     71     56     17     34
D16V8, multiclass
        clus
vv       AMP PEAK 16(13Q34) MUTATED AMP PEAK 16(13Q34) WILD-TYPE
  CLUS_1                         12                           48
  CLUS_2                         24                           71
  CLUS_3                         16                           56
  CLUS_4                          8                           17
  CLUS_5                          9                           34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(13Q34) MUTATED       22     20     24
  AMP PEAK 16(13Q34) WILD-TYPE     79     59     78
D16V9, multiclass
        clus
vv       AMP PEAK 16(13Q34) MUTATED AMP PEAK 16(13Q34) WILD-TYPE
  CLUS_1                         22                           79
  CLUS_2                         20                           59
  CLUS_3                         24                           78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(13Q34) MUTATED        6     13     25     13      9
  AMP PEAK 16(13Q34) WILD-TYPE     23     66     74     29     24
D16V10, multiclass
        clus
vv       AMP PEAK 16(13Q34) MUTATED AMP PEAK 16(13Q34) WILD-TYPE
  CLUS_1                          6                           23
  CLUS_2                         13                           66
  CLUS_3                         25                           74
  CLUS_4                         13                           29
  CLUS_5                          9                           24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(15Q26.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(15Q26.1) MUTATED        4     40     14      7     11
  AMP PEAK 17(15Q26.1) WILD-TYPE     11     72     42     52     42
D17V1, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                            4                             11
  CLUS_2                           40                             72
  CLUS_3                           14                             42
  CLUS_4                            7                             52
  CLUS_5                           11                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q26.1) MUTATED       18     28     30
  AMP PEAK 17(15Q26.1) WILD-TYPE     54     87     78
D17V2, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           18                             54
  CLUS_2                           28                             87
  CLUS_3                           30                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q26.1) MUTATED       18      7     18
  AMP PEAK 17(15Q26.1) WILD-TYPE     41     34     46
D17V3, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           18                             41
  CLUS_2                            7                             34
  CLUS_3                           18                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(15Q26.1) MUTATED        7     18     10      5      3
  AMP PEAK 17(15Q26.1) WILD-TYPE     25     29     35     18     14
D17V4, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                            7                             25
  CLUS_2                           18                             29
  CLUS_3                           10                             35
  CLUS_4                            5                             18
  CLUS_5                            3                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(15Q26.1) MUTATED       13     24     16     21
  AMP PEAK 17(15Q26.1) WILD-TYPE     44     74     53     47
D17V5, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           13                             44
  CLUS_2                           24                             74
  CLUS_3                           16                             53
  CLUS_4                           21                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q26.1) MUTATED       19     44     11
  AMP PEAK 17(15Q26.1) WILD-TYPE     53    141     24
D17V6, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           19                             53
  CLUS_2                           44                            141
  CLUS_3                           11                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q26.1) MUTATED       28     18     30
  AMP PEAK 17(15Q26.1) WILD-TYPE     77     57     85
D17V7, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           28                             77
  CLUS_2                           18                             57
  CLUS_3                           30                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(15Q26.1) MUTATED       16     23     15      8     14
  AMP PEAK 17(15Q26.1) WILD-TYPE     44     72     57     17     29
D17V8, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           16                             44
  CLUS_2                           23                             72
  CLUS_3                           15                             57
  CLUS_4                            8                             17
  CLUS_5                           14                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q26.1) MUTATED       26     18     29
  AMP PEAK 17(15Q26.1) WILD-TYPE     75     61     73
D17V9, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           26                             75
  CLUS_2                           18                             61
  CLUS_3                           29                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(15Q26.1) MUTATED        7     22     26      9      9
  AMP PEAK 17(15Q26.1) WILD-TYPE     22     57     73     33     24
D17V10, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                            7                             22
  CLUS_2                           22                             57
  CLUS_3                           26                             73
  CLUS_4                            9                             33
  CLUS_5                            9                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(16P13.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(16P13.13) MUTATED        1     28     17      9     10
  AMP PEAK 18(16P13.13) WILD-TYPE     14     84     39     50     43
D18V1, multiclass
        clus
vv       AMP PEAK 18(16P13.13) MUTATED AMP PEAK 18(16P13.13) WILD-TYPE
  CLUS_1                             1                              14
  CLUS_2                            28                              84
  CLUS_3                            17                              39
  CLUS_4                             9                              50
  CLUS_5                            10                              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16P13.13) MUTATED       20     28     17
  AMP PEAK 18(16P13.13) WILD-TYPE     52     87     91
D18V2, multiclass
        clus
vv       AMP PEAK 18(16P13.13) MUTATED AMP PEAK 18(16P13.13) WILD-TYPE
  CLUS_1                            20                              52
  CLUS_2                            28                              87
  CLUS_3                            17                              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16P13.13) MUTATED       15      7     15
  AMP PEAK 18(16P13.13) WILD-TYPE     44     34     49
D18V3, multiclass
        clus
vv       AMP PEAK 18(16P13.13) MUTATED AMP PEAK 18(16P13.13) WILD-TYPE
  CLUS_1                            15                              44
  CLUS_2                             7                              34
  CLUS_3                            15                              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(16P13.13) MUTATED        6     11     11      4      5
  AMP PEAK 18(16P13.13) WILD-TYPE     26     36     34     19     12
D18V4, multiclass
        clus
vv       AMP PEAK 18(16P13.13) MUTATED AMP PEAK 18(16P13.13) WILD-TYPE
  CLUS_1                             6                              26
  CLUS_2                            11                              36
  CLUS_3                            11                              34
  CLUS_4                             4                              19
  CLUS_5                             5                              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(16P13.13) MUTATED       18     19     16     11
  AMP PEAK 18(16P13.13) WILD-TYPE     39     79     53     57
D18V5, multiclass
        clus
vv       AMP PEAK 18(16P13.13) MUTATED AMP PEAK 18(16P13.13) WILD-TYPE
  CLUS_1                            18                              39
  CLUS_2                            19                              79
  CLUS_3                            16                              53
  CLUS_4                            11                              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16P13.13) MUTATED       19     40      5
  AMP PEAK 18(16P13.13) WILD-TYPE     53    145     30
D18V6, multiclass
        clus
vv       AMP PEAK 18(16P13.13) MUTATED AMP PEAK 18(16P13.13) WILD-TYPE
  CLUS_1                            19                              53
  CLUS_2                            40                             145
  CLUS_3                             5                              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16P13.13) MUTATED       27     16     22
  AMP PEAK 18(16P13.13) WILD-TYPE     78     59     93
D18V7, multiclass
        clus
vv       AMP PEAK 18(16P13.13) MUTATED AMP PEAK 18(16P13.13) WILD-TYPE
  CLUS_1                            27                              78
  CLUS_2                            16                              59
  CLUS_3                            22                              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(16P13.13) MUTATED       15     18     14     10      8
  AMP PEAK 18(16P13.13) WILD-TYPE     45     77     58     15     35
D18V8, multiclass
        clus
vv       AMP PEAK 18(16P13.13) MUTATED AMP PEAK 18(16P13.13) WILD-TYPE
  CLUS_1                            15                              45
  CLUS_2                            18                              77
  CLUS_3                            14                              58
  CLUS_4                            10                              15
  CLUS_5                             8                              35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16P13.13) MUTATED       24     17     19
  AMP PEAK 18(16P13.13) WILD-TYPE     77     62     83
D18V9, multiclass
        clus
vv       AMP PEAK 18(16P13.13) MUTATED AMP PEAK 18(16P13.13) WILD-TYPE
  CLUS_1                            24                              77
  CLUS_2                            17                              62
  CLUS_3                            19                              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(16P13.13) MUTATED        7     15     23      5     10
  AMP PEAK 18(16P13.13) WILD-TYPE     22     64     76     37     23
D18V10, multiclass
        clus
vv       AMP PEAK 18(16P13.13) MUTATED AMP PEAK 18(16P13.13) WILD-TYPE
  CLUS_1                             7                              22
  CLUS_2                            15                              64
  CLUS_3                            23                              76
  CLUS_4                             5                              37
  CLUS_5                            10                              23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(17Q12) MUTATED        0     34      6      7      8
  AMP PEAK 19(17Q12) WILD-TYPE     15     78     50     52     45
D19V1, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          0                           15
  CLUS_2                         34                           78
  CLUS_3                          6                           50
  CLUS_4                          7                           52
  CLUS_5                          8                           45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q12) MUTATED       23     19     13
  AMP PEAK 19(17Q12) WILD-TYPE     49     96     95
D19V2, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         23                           49
  CLUS_2                         19                           96
  CLUS_3                         13                           95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q12) MUTATED       11      7     15
  AMP PEAK 19(17Q12) WILD-TYPE     48     34     49
D19V3, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         11                           48
  CLUS_2                          7                           34
  CLUS_3                         15                           49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(17Q12) MUTATED        2     11     12      2      6
  AMP PEAK 19(17Q12) WILD-TYPE     30     36     33     21     11
D19V4, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          2                           30
  CLUS_2                         11                           36
  CLUS_3                         12                           33
  CLUS_4                          2                           21
  CLUS_5                          6                           11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q12) MUTATED       10     13     23      8
  AMP PEAK 19(17Q12) WILD-TYPE     47     85     46     60
D19V5, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         10                           47
  CLUS_2                         13                           85
  CLUS_3                         23                           46
  CLUS_4                          8                           60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q12) MUTATED       23     28      3
  AMP PEAK 19(17Q12) WILD-TYPE     49    157     32
D19V6, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         23                           49
  CLUS_2                         28                          157
  CLUS_3                          3                           32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q12) MUTATED       25     15     15
  AMP PEAK 19(17Q12) WILD-TYPE     80     60    100
D19V7, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         25                           80
  CLUS_2                         15                           60
  CLUS_3                         15                          100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(17Q12) MUTATED       20     17      9      3      6
  AMP PEAK 19(17Q12) WILD-TYPE     40     78     63     22     37
D19V8, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         20                           40
  CLUS_2                         17                           78
  CLUS_3                          9                           63
  CLUS_4                          3                           22
  CLUS_5                          6                           37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q12) MUTATED       28     14     12
  AMP PEAK 19(17Q12) WILD-TYPE     73     65     90
D19V9, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         28                           73
  CLUS_2                         14                           65
  CLUS_3                         12                           90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(17Q12) MUTATED        8     14     16      5     11
  AMP PEAK 19(17Q12) WILD-TYPE     21     65     83     37     22
D19V10, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          8                           21
  CLUS_2                         14                           65
  CLUS_3                         16                           83
  CLUS_4                          5                           37
  CLUS_5                         11                           22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(17Q25.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(17Q25.1) MUTATED        2     44      7      4     17
  AMP PEAK 20(17Q25.1) WILD-TYPE     13     68     49     55     36
D20V1, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                            2                             13
  CLUS_2                           44                             68
  CLUS_3                            7                             49
  CLUS_4                            4                             55
  CLUS_5                           17                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17Q25.1) MUTATED       23     35     16
  AMP PEAK 20(17Q25.1) WILD-TYPE     49     80     92
D20V2, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                           23                             49
  CLUS_2                           35                             80
  CLUS_3                           16                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17Q25.1) MUTATED       14     12     23
  AMP PEAK 20(17Q25.1) WILD-TYPE     45     29     41
D20V3, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                           14                             45
  CLUS_2                           12                             29
  CLUS_3                           23                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(17Q25.1) MUTATED        4     15     16      6      8
  AMP PEAK 20(17Q25.1) WILD-TYPE     28     32     29     17      9
D20V4, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                            4                             28
  CLUS_2                           15                             32
  CLUS_3                           16                             29
  CLUS_4                            6                             17
  CLUS_5                            8                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17Q25.1) MUTATED       21     16     20     15
  AMP PEAK 20(17Q25.1) WILD-TYPE     36     82     49     53
D20V5, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                           21                             36
  CLUS_2                           16                             82
  CLUS_3                           20                             49
  CLUS_4                           15                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17Q25.1) MUTATED       20     46      6
  AMP PEAK 20(17Q25.1) WILD-TYPE     52    139     29
D20V6, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                           20                             52
  CLUS_2                           46                            139
  CLUS_3                            6                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17Q25.1) MUTATED       28     21     25
  AMP PEAK 20(17Q25.1) WILD-TYPE     77     54     90
D20V7, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                           28                             77
  CLUS_2                           21                             54
  CLUS_3                           25                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(17Q25.1) MUTATED       16     26     17      6      9
  AMP PEAK 20(17Q25.1) WILD-TYPE     44     69     55     19     34
D20V8, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                           16                             44
  CLUS_2                           26                             69
  CLUS_3                           17                             55
  CLUS_4                            6                             19
  CLUS_5                            9                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17Q25.1) MUTATED       28     23     21
  AMP PEAK 20(17Q25.1) WILD-TYPE     73     56     81
D20V9, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                           28                             73
  CLUS_2                           23                             56
  CLUS_3                           21                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(17Q25.1) MUTATED        9     22     24      9      8
  AMP PEAK 20(17Q25.1) WILD-TYPE     20     57     75     33     25
D20V10, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                            9                             20
  CLUS_2                           22                             57
  CLUS_3                           24                             75
  CLUS_4                            9                             33
  CLUS_5                            8                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(19P13.3) MUTATED        1     17     14      5      2
  AMP PEAK 21(19P13.3) WILD-TYPE     14     95     42     54     51
D21V1, multiclass
        clus
vv       AMP PEAK 21(19P13.3) MUTATED AMP PEAK 21(19P13.3) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                           17                             95
  CLUS_3                           14                             42
  CLUS_4                            5                             54
  CLUS_5                            2                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19P13.3) MUTATED        6     22     11
  AMP PEAK 21(19P13.3) WILD-TYPE     66     93     97
D21V2, multiclass
        clus
vv       AMP PEAK 21(19P13.3) MUTATED AMP PEAK 21(19P13.3) WILD-TYPE
  CLUS_1                            6                             66
  CLUS_2                           22                             93
  CLUS_3                           11                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19P13.3) MUTATED        4      6     12
  AMP PEAK 21(19P13.3) WILD-TYPE     55     35     52
D21V3, multiclass
        clus
vv       AMP PEAK 21(19P13.3) MUTATED AMP PEAK 21(19P13.3) WILD-TYPE
  CLUS_1                            4                             55
  CLUS_2                            6                             35
  CLUS_3                           12                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(19P13.3) MUTATED        2      8      7      2      3
  AMP PEAK 21(19P13.3) WILD-TYPE     30     39     38     21     14
D21V4, multiclass
        clus
vv       AMP PEAK 21(19P13.3) MUTATED AMP PEAK 21(19P13.3) WILD-TYPE
  CLUS_1                            2                             30
  CLUS_2                            8                             39
  CLUS_3                            7                             38
  CLUS_4                            2                             21
  CLUS_5                            3                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19P13.3) MUTATED        9     18      6      6
  AMP PEAK 21(19P13.3) WILD-TYPE     48     80     63     62
D21V5, multiclass
        clus
vv       AMP PEAK 21(19P13.3) MUTATED AMP PEAK 21(19P13.3) WILD-TYPE
  CLUS_1                            9                             48
  CLUS_2                           18                             80
  CLUS_3                            6                             63
  CLUS_4                            6                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19P13.3) MUTATED        5     34      0
  AMP PEAK 21(19P13.3) WILD-TYPE     67    151     35
D21V6, multiclass
        clus
vv       AMP PEAK 21(19P13.3) MUTATED AMP PEAK 21(19P13.3) WILD-TYPE
  CLUS_1                            5                             67
  CLUS_2                           34                            151
  CLUS_3                            0                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19P13.3) MUTATED       12     14     13
  AMP PEAK 21(19P13.3) WILD-TYPE     93     61    102
D21V7, multiclass
        clus
vv       AMP PEAK 21(19P13.3) MUTATED AMP PEAK 21(19P13.3) WILD-TYPE
  CLUS_1                           12                             93
  CLUS_2                           14                             61
  CLUS_3                           13                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(19P13.3) MUTATED        5     12     18      1      3
  AMP PEAK 21(19P13.3) WILD-TYPE     55     83     54     24     40
D21V8, multiclass
        clus
vv       AMP PEAK 21(19P13.3) MUTATED AMP PEAK 21(19P13.3) WILD-TYPE
  CLUS_1                            5                             55
  CLUS_2                           12                             83
  CLUS_3                           18                             54
  CLUS_4                            1                             24
  CLUS_5                            3                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19P13.3) MUTATED       11     14     12
  AMP PEAK 21(19P13.3) WILD-TYPE     90     65     90
D21V9, multiclass
        clus
vv       AMP PEAK 21(19P13.3) MUTATED AMP PEAK 21(19P13.3) WILD-TYPE
  CLUS_1                           11                             90
  CLUS_2                           14                             65
  CLUS_3                           12                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(19P13.3) MUTATED        1     17     13      3      3
  AMP PEAK 21(19P13.3) WILD-TYPE     28     62     86     39     30
D21V10, multiclass
        clus
vv       AMP PEAK 21(19P13.3) MUTATED AMP PEAK 21(19P13.3) WILD-TYPE
  CLUS_1                            1                             28
  CLUS_2                           17                             62
  CLUS_3                           13                             86
  CLUS_4                            3                             39
  CLUS_5                            3                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(19P13.2) MUTATED        1     15     16      5      6
  AMP PEAK 22(19P13.2) WILD-TYPE     14     97     40     54     47
D22V1, multiclass
        clus
vv       AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                           15                             97
  CLUS_3                           16                             40
  CLUS_4                            5                             54
  CLUS_5                            6                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19P13.2) MUTATED        7     21     15
  AMP PEAK 22(19P13.2) WILD-TYPE     65     94     93
D22V2, multiclass
        clus
vv       AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE
  CLUS_1                            7                             65
  CLUS_2                           21                             94
  CLUS_3                           15                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19P13.2) MUTATED        5      6     13
  AMP PEAK 22(19P13.2) WILD-TYPE     54     35     51
D22V3, multiclass
        clus
vv       AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE
  CLUS_1                            5                             54
  CLUS_2                            6                             35
  CLUS_3                           13                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(19P13.2) MUTATED        3     10      5      4      2
  AMP PEAK 22(19P13.2) WILD-TYPE     29     37     40     19     15
D22V4, multiclass
        clus
vv       AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE
  CLUS_1                            3                             29
  CLUS_2                           10                             37
  CLUS_3                            5                             40
  CLUS_4                            4                             19
  CLUS_5                            2                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19P13.2) MUTATED        7     18      7     11
  AMP PEAK 22(19P13.2) WILD-TYPE     50     80     62     57
D22V5, multiclass
        clus
vv       AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE
  CLUS_1                            7                             50
  CLUS_2                           18                             80
  CLUS_3                            7                             62
  CLUS_4                           11                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19P13.2) MUTATED        5     33      5
  AMP PEAK 22(19P13.2) WILD-TYPE     67    152     30
D22V6, multiclass
        clus
vv       AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE
  CLUS_1                            5                             67
  CLUS_2                           33                            152
  CLUS_3                            5                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19P13.2) MUTATED       14     10     19
  AMP PEAK 22(19P13.2) WILD-TYPE     91     65     96
D22V7, multiclass
        clus
vv       AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE
  CLUS_1                           14                             91
  CLUS_2                           10                             65
  CLUS_3                           19                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(19P13.2) MUTATED        5     16     16      1      5
  AMP PEAK 22(19P13.2) WILD-TYPE     55     79     56     24     38
D22V8, multiclass
        clus
vv       AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE
  CLUS_1                            5                             55
  CLUS_2                           16                             79
  CLUS_3                           16                             56
  CLUS_4                            1                             24
  CLUS_5                            5                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19P13.2) MUTATED       10     12     17
  AMP PEAK 22(19P13.2) WILD-TYPE     91     67     85
D22V9, multiclass
        clus
vv       AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE
  CLUS_1                           10                             91
  CLUS_2                           12                             67
  CLUS_3                           17                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(19P13.2) MUTATED        1     14     16      5      3
  AMP PEAK 22(19P13.2) WILD-TYPE     28     65     83     37     30
D22V10, multiclass
        clus
vv       AMP PEAK 22(19P13.2) MUTATED AMP PEAK 22(19P13.2) WILD-TYPE
  CLUS_1                            1                             28
  CLUS_2                           14                             65
  CLUS_3                           16                             83
  CLUS_4                            5                             37
  CLUS_5                            3                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(19Q13.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(19Q13.13) MUTATED        4     63     19      5      2
  AMP PEAK 23(19Q13.13) WILD-TYPE     11     49     37     54     51
D23V1, multiclass
        clus
vv       AMP PEAK 23(19Q13.13) MUTATED AMP PEAK 23(19Q13.13) WILD-TYPE
  CLUS_1                             4                              11
  CLUS_2                            63                              49
  CLUS_3                            19                              37
  CLUS_4                             5                              54
  CLUS_5                             2                              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19Q13.13) MUTATED       19     36     38
  AMP PEAK 23(19Q13.13) WILD-TYPE     53     79     70
D23V2, multiclass
        clus
vv       AMP PEAK 23(19Q13.13) MUTATED AMP PEAK 23(19Q13.13) WILD-TYPE
  CLUS_1                            19                              53
  CLUS_2                            36                              79
  CLUS_3                            38                              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19Q13.13) MUTATED       20     13     24
  AMP PEAK 23(19Q13.13) WILD-TYPE     39     28     40
D23V3, multiclass
        clus
vv       AMP PEAK 23(19Q13.13) MUTATED AMP PEAK 23(19Q13.13) WILD-TYPE
  CLUS_1                            20                              39
  CLUS_2                            13                              28
  CLUS_3                            24                              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(19Q13.13) MUTATED        9     15     14      9     10
  AMP PEAK 23(19Q13.13) WILD-TYPE     23     32     31     14      7
D23V4, multiclass
        clus
vv       AMP PEAK 23(19Q13.13) MUTATED AMP PEAK 23(19Q13.13) WILD-TYPE
  CLUS_1                             9                              23
  CLUS_2                            15                              32
  CLUS_3                            14                              31
  CLUS_4                             9                              14
  CLUS_5                            10                               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(19Q13.13) MUTATED       21     27     18     25
  AMP PEAK 23(19Q13.13) WILD-TYPE     36     71     51     43
D23V5, multiclass
        clus
vv       AMP PEAK 23(19Q13.13) MUTATED AMP PEAK 23(19Q13.13) WILD-TYPE
  CLUS_1                            21                              36
  CLUS_2                            27                              71
  CLUS_3                            18                              51
  CLUS_4                            25                              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19Q13.13) MUTATED       20     57     14
  AMP PEAK 23(19Q13.13) WILD-TYPE     52    128     21
D23V6, multiclass
        clus
vv       AMP PEAK 23(19Q13.13) MUTATED AMP PEAK 23(19Q13.13) WILD-TYPE
  CLUS_1                            20                              52
  CLUS_2                            57                             128
  CLUS_3                            14                              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19Q13.13) MUTATED       33     21     39
  AMP PEAK 23(19Q13.13) WILD-TYPE     72     54     76
D23V7, multiclass
        clus
vv       AMP PEAK 23(19Q13.13) MUTATED AMP PEAK 23(19Q13.13) WILD-TYPE
  CLUS_1                            33                              72
  CLUS_2                            21                              54
  CLUS_3                            39                              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(19Q13.13) MUTATED       14     32     22     12     13
  AMP PEAK 23(19Q13.13) WILD-TYPE     46     63     50     13     30
D23V8, multiclass
        clus
vv       AMP PEAK 23(19Q13.13) MUTATED AMP PEAK 23(19Q13.13) WILD-TYPE
  CLUS_1                            14                              46
  CLUS_2                            32                              63
  CLUS_3                            22                              50
  CLUS_4                            12                              13
  CLUS_5                            13                              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19Q13.13) MUTATED       31     21     35
  AMP PEAK 23(19Q13.13) WILD-TYPE     70     58     67
D23V9, multiclass
        clus
vv       AMP PEAK 23(19Q13.13) MUTATED AMP PEAK 23(19Q13.13) WILD-TYPE
  CLUS_1                            31                              70
  CLUS_2                            21                              58
  CLUS_3                            35                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(19Q13.13) MUTATED        8     24     35     13      7
  AMP PEAK 23(19Q13.13) WILD-TYPE     21     55     64     29     26
D23V10, multiclass
        clus
vv       AMP PEAK 23(19Q13.13) MUTATED AMP PEAK 23(19Q13.13) WILD-TYPE
  CLUS_1                             8                              21
  CLUS_2                            24                              55
  CLUS_3                            35                              64
  CLUS_4                            13                              29
  CLUS_5                             7                              26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(20Q11.21) MUTATED        1     65     31     12     26
  AMP PEAK 24(20Q11.21) WILD-TYPE     14     47     25     47     27
D24V1, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                             1                              14
  CLUS_2                            65                              47
  CLUS_3                            31                              25
  CLUS_4                            12                              47
  CLUS_5                            26                              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20Q11.21) MUTATED       42     54     39
  AMP PEAK 24(20Q11.21) WILD-TYPE     30     61     69
D24V2, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            42                              30
  CLUS_2                            54                              61
  CLUS_3                            39                              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20Q11.21) MUTATED       26     22     28
  AMP PEAK 24(20Q11.21) WILD-TYPE     33     19     36
D24V3, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            26                              33
  CLUS_2                            22                              19
  CLUS_3                            28                              36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(20Q11.21) MUTATED       13     17     22      9     15
  AMP PEAK 24(20Q11.21) WILD-TYPE     19     30     23     14      2
D24V4, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            13                              19
  CLUS_2                            17                              30
  CLUS_3                            22                              23
  CLUS_4                             9                              14
  CLUS_5                            15                               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20Q11.21) MUTATED       32     43     37     23
  AMP PEAK 24(20Q11.21) WILD-TYPE     25     55     32     45
D24V5, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            32                              25
  CLUS_2                            43                              55
  CLUS_3                            37                              32
  CLUS_4                            23                              45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20Q11.21) MUTATED       42     81     12
  AMP PEAK 24(20Q11.21) WILD-TYPE     30    104     23
D24V6, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            42                              30
  CLUS_2                            81                             104
  CLUS_3                            12                              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20Q11.21) MUTATED       55     36     44
  AMP PEAK 24(20Q11.21) WILD-TYPE     50     39     71
D24V7, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            55                              50
  CLUS_2                            36                              39
  CLUS_3                            44                              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(20Q11.21) MUTATED       35     37     31     16     16
  AMP PEAK 24(20Q11.21) WILD-TYPE     25     58     41      9     27
D24V8, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            35                              25
  CLUS_2                            37                              58
  CLUS_3                            31                              41
  CLUS_4                            16                               9
  CLUS_5                            16                              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20Q11.21) MUTATED       56     35     39
  AMP PEAK 24(20Q11.21) WILD-TYPE     45     44     63
D24V9, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            56                              45
  CLUS_2                            35                              44
  CLUS_3                            39                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(20Q11.21) MUTATED       13     34     46     16     21
  AMP PEAK 24(20Q11.21) WILD-TYPE     16     45     53     26     12
D24V10, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            13                              16
  CLUS_2                            34                              45
  CLUS_3                            46                              53
  CLUS_4                            16                              26
  CLUS_5                            21                              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(21Q22.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(21Q22.13) MUTATED        0     21     13      6      8
  AMP PEAK 25(21Q22.13) WILD-TYPE     15     91     43     53     45
D25V1, multiclass
        clus
vv       AMP PEAK 25(21Q22.13) MUTATED AMP PEAK 25(21Q22.13) WILD-TYPE
  CLUS_1                             0                              15
  CLUS_2                            21                              91
  CLUS_3                            13                              43
  CLUS_4                             6                              53
  CLUS_5                             8                              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(21Q22.13) MUTATED       10     18     20
  AMP PEAK 25(21Q22.13) WILD-TYPE     62     97     88
D25V2, multiclass
        clus
vv       AMP PEAK 25(21Q22.13) MUTATED AMP PEAK 25(21Q22.13) WILD-TYPE
  CLUS_1                            10                              62
  CLUS_2                            18                              97
  CLUS_3                            20                              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(21Q22.13) MUTATED        8      5     12
  AMP PEAK 25(21Q22.13) WILD-TYPE     51     36     52
D25V3, multiclass
        clus
vv       AMP PEAK 25(21Q22.13) MUTATED AMP PEAK 25(21Q22.13) WILD-TYPE
  CLUS_1                             8                              51
  CLUS_2                             5                              36
  CLUS_3                            12                              52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(21Q22.13) MUTATED        3      9      8      3      2
  AMP PEAK 25(21Q22.13) WILD-TYPE     29     38     37     20     15
D25V4, multiclass
        clus
vv       AMP PEAK 25(21Q22.13) MUTATED AMP PEAK 25(21Q22.13) WILD-TYPE
  CLUS_1                             3                              29
  CLUS_2                             9                              38
  CLUS_3                             8                              37
  CLUS_4                             3                              20
  CLUS_5                             2                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(21Q22.13) MUTATED       10     23      7      7
  AMP PEAK 25(21Q22.13) WILD-TYPE     47     75     62     61
D25V5, multiclass
        clus
vv       AMP PEAK 25(21Q22.13) MUTATED AMP PEAK 25(21Q22.13) WILD-TYPE
  CLUS_1                            10                              47
  CLUS_2                            23                              75
  CLUS_3                             7                              62
  CLUS_4                             7                              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(21Q22.13) MUTATED        9     34      4
  AMP PEAK 25(21Q22.13) WILD-TYPE     63    151     31
D25V6, multiclass
        clus
vv       AMP PEAK 25(21Q22.13) MUTATED AMP PEAK 25(21Q22.13) WILD-TYPE
  CLUS_1                             9                              63
  CLUS_2                            34                             151
  CLUS_3                             4                              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(21Q22.13) MUTATED       16     11     21
  AMP PEAK 25(21Q22.13) WILD-TYPE     89     64     94
D25V7, multiclass
        clus
vv       AMP PEAK 25(21Q22.13) MUTATED AMP PEAK 25(21Q22.13) WILD-TYPE
  CLUS_1                            16                              89
  CLUS_2                            11                              64
  CLUS_3                            21                              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(21Q22.13) MUTATED        8     15     13      3      9
  AMP PEAK 25(21Q22.13) WILD-TYPE     52     80     59     22     34
D25V8, multiclass
        clus
vv       AMP PEAK 25(21Q22.13) MUTATED AMP PEAK 25(21Q22.13) WILD-TYPE
  CLUS_1                             8                              52
  CLUS_2                            15                              80
  CLUS_3                            13                              59
  CLUS_4                             3                              22
  CLUS_5                             9                              34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(21Q22.13) MUTATED       15     13     18
  AMP PEAK 25(21Q22.13) WILD-TYPE     86     66     84
D25V9, multiclass
        clus
vv       AMP PEAK 25(21Q22.13) MUTATED AMP PEAK 25(21Q22.13) WILD-TYPE
  CLUS_1                            15                              86
  CLUS_2                            13                              66
  CLUS_3                            18                              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(21Q22.13) MUTATED        5     15     19      5      2
  AMP PEAK 25(21Q22.13) WILD-TYPE     24     64     80     37     31
D25V10, multiclass
        clus
vv       AMP PEAK 25(21Q22.13) MUTATED AMP PEAK 25(21Q22.13) WILD-TYPE
  CLUS_1                             5                              24
  CLUS_2                            15                              64
  CLUS_3                            19                              80
  CLUS_4                             5                              37
  CLUS_5                             2                              31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(XQ28) MUTATED        4     30     14     15     12
  AMP PEAK 26(XQ28) WILD-TYPE     11     82     42     44     41
D26V1, multiclass
        clus
vv       AMP PEAK 26(XQ28) MUTATED AMP PEAK 26(XQ28) WILD-TYPE
  CLUS_1                         4                          11
  CLUS_2                        30                          82
  CLUS_3                        14                          42
  CLUS_4                        15                          44
  CLUS_5                        12                          41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(XQ28) MUTATED       17     39     19
  AMP PEAK 26(XQ28) WILD-TYPE     55     76     89
D26V2, multiclass
        clus
vv       AMP PEAK 26(XQ28) MUTATED AMP PEAK 26(XQ28) WILD-TYPE
  CLUS_1                        17                          55
  CLUS_2                        39                          76
  CLUS_3                        19                          89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(XQ28) MUTATED       15      9     20
  AMP PEAK 26(XQ28) WILD-TYPE     44     32     44
D26V3, multiclass
        clus
vv       AMP PEAK 26(XQ28) MUTATED AMP PEAK 26(XQ28) WILD-TYPE
  CLUS_1                        15                          44
  CLUS_2                         9                          32
  CLUS_3                        20                          44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(XQ28) MUTATED        7     15     12      6      4
  AMP PEAK 26(XQ28) WILD-TYPE     25     32     33     17     13
D26V4, multiclass
        clus
vv       AMP PEAK 26(XQ28) MUTATED AMP PEAK 26(XQ28) WILD-TYPE
  CLUS_1                         7                          25
  CLUS_2                        15                          32
  CLUS_3                        12                          33
  CLUS_4                         6                          17
  CLUS_5                         4                          13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(XQ28) MUTATED       17     23     15     19
  AMP PEAK 26(XQ28) WILD-TYPE     40     75     54     49
D26V5, multiclass
        clus
vv       AMP PEAK 26(XQ28) MUTATED AMP PEAK 26(XQ28) WILD-TYPE
  CLUS_1                        17                          40
  CLUS_2                        23                          75
  CLUS_3                        15                          54
  CLUS_4                        19                          49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(XQ28) MUTATED       16     51      7
  AMP PEAK 26(XQ28) WILD-TYPE     56    134     28
D26V6, multiclass
        clus
vv       AMP PEAK 26(XQ28) MUTATED AMP PEAK 26(XQ28) WILD-TYPE
  CLUS_1                        16                          56
  CLUS_2                        51                         134
  CLUS_3                         7                          28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(XQ28) MUTATED       29      8     38
  AMP PEAK 26(XQ28) WILD-TYPE     76     67     77
D26V7, multiclass
        clus
vv       AMP PEAK 26(XQ28) MUTATED AMP PEAK 26(XQ28) WILD-TYPE
  CLUS_1                        29                          76
  CLUS_2                         8                          67
  CLUS_3                        38                          77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(XQ28) MUTATED       13     29     12      9     12
  AMP PEAK 26(XQ28) WILD-TYPE     47     66     60     16     31
D26V8, multiclass
        clus
vv       AMP PEAK 26(XQ28) MUTATED AMP PEAK 26(XQ28) WILD-TYPE
  CLUS_1                        13                          47
  CLUS_2                        29                          66
  CLUS_3                        12                          60
  CLUS_4                         9                          16
  CLUS_5                        12                          31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(XQ28) MUTATED       28     11     31
  AMP PEAK 26(XQ28) WILD-TYPE     73     68     71
D26V9, multiclass
        clus
vv       AMP PEAK 26(XQ28) MUTATED AMP PEAK 26(XQ28) WILD-TYPE
  CLUS_1                        28                          73
  CLUS_2                        11                          68
  CLUS_3                        31                          71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(XQ28) MUTATED       11     13     32      9      5
  AMP PEAK 26(XQ28) WILD-TYPE     18     66     67     33     28
D26V10, multiclass
        clus
vv       AMP PEAK 26(XQ28) MUTATED AMP PEAK 26(XQ28) WILD-TYPE
  CLUS_1                        11                          18
  CLUS_2                        13                          66
  CLUS_3                        32                          67
  CLUS_4                         9                          33
  CLUS_5                         5                          28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  1(1P36.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.23) MUTATED        0     22      6      4      8
  DEL PEAK  1(1P36.23) WILD-TYPE     15     90     50     55     45
D27V1, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            0                             15
  CLUS_2                           22                             90
  CLUS_3                            6                             50
  CLUS_4                            4                             55
  CLUS_5                            8                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       17     13     10
  DEL PEAK  1(1P36.23) WILD-TYPE     55    102     98
D27V2, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           17                             55
  CLUS_2                           13                            102
  CLUS_3                           10                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED        9      4     10
  DEL PEAK  1(1P36.23) WILD-TYPE     50     37     54
D27V3, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            9                             50
  CLUS_2                            4                             37
  CLUS_3                           10                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.23) MUTATED        5      7      2      4      5
  DEL PEAK  1(1P36.23) WILD-TYPE     27     40     43     19     12
D27V4, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            5                             27
  CLUS_2                            7                             40
  CLUS_3                            2                             43
  CLUS_4                            4                             19
  CLUS_5                            5                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.23) MUTATED       10      3     14     13
  DEL PEAK  1(1P36.23) WILD-TYPE     47     95     55     55
D27V5, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           10                             47
  CLUS_2                            3                             95
  CLUS_3                           14                             55
  CLUS_4                           13                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       18     12     10
  DEL PEAK  1(1P36.23) WILD-TYPE     54    173     25
D27V6, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           18                             54
  CLUS_2                           12                            173
  CLUS_3                           10                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       17      6     17
  DEL PEAK  1(1P36.23) WILD-TYPE     88     69     98
D27V7, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           17                             88
  CLUS_2                            6                             69
  CLUS_3                           17                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.23) MUTATED       16     11      1      5      7
  DEL PEAK  1(1P36.23) WILD-TYPE     44     84     71     20     36
D27V8, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           16                             44
  CLUS_2                           11                             84
  CLUS_3                            1                             71
  CLUS_4                            5                             20
  CLUS_5                            7                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       18      7     14
  DEL PEAK  1(1P36.23) WILD-TYPE     83     72     88
D27V9, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           18                             83
  CLUS_2                            7                             72
  CLUS_3                           14                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.23) MUTATED        6      4     12      7     10
  DEL PEAK  1(1P36.23) WILD-TYPE     23     75     87     35     23
D27V10, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            6                             23
  CLUS_2                            4                             75
  CLUS_3                           12                             87
  CLUS_4                            7                             35
  CLUS_5                           10                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  2(1P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED        0     18      4      2     10
  DEL PEAK  2(1P13.2) WILD-TYPE     15     94     52     57     43
D28V1, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           0                            15
  CLUS_2                          18                            94
  CLUS_3                           4                            52
  CLUS_4                           2                            57
  CLUS_5                          10                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED        3     17     14
  DEL PEAK  2(1P13.2) WILD-TYPE     69     98     94
D28V2, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           3                            69
  CLUS_2                          17                            98
  CLUS_3                          14                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED        6      5      2
  DEL PEAK  2(1P13.2) WILD-TYPE     53     36     62
D28V3, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           6                            53
  CLUS_2                           5                            36
  CLUS_3                           2                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED        3      2      2      3      3
  DEL PEAK  2(1P13.2) WILD-TYPE     29     45     43     20     14
D28V4, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           3                            29
  CLUS_2                           2                            45
  CLUS_3                           2                            43
  CLUS_4                           3                            20
  CLUS_5                           3                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.2) MUTATED        7      5      3     19
  DEL PEAK  2(1P13.2) WILD-TYPE     50     93     66     49
D28V5, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           7                            50
  CLUS_2                           5                            93
  CLUS_3                           3                            66
  CLUS_4                          19                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED        4     23      7
  DEL PEAK  2(1P13.2) WILD-TYPE     68    162     28
D28V6, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           4                            68
  CLUS_2                          23                           162
  CLUS_3                           7                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED        6      6     22
  DEL PEAK  2(1P13.2) WILD-TYPE     99     69     93
D28V7, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           6                            99
  CLUS_2                           6                            69
  CLUS_3                          22                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED        4     13      5      5      7
  DEL PEAK  2(1P13.2) WILD-TYPE     56     82     67     20     36
D28V8, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           4                            56
  CLUS_2                          13                            82
  CLUS_3                           5                            67
  CLUS_4                           5                            20
  CLUS_5                           7                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED        6      8     20
  DEL PEAK  2(1P13.2) WILD-TYPE     95     71     82
D28V9, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           6                            95
  CLUS_2                           8                            71
  CLUS_3                          20                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED        1      6     16      9      2
  DEL PEAK  2(1P13.2) WILD-TYPE     28     73     83     33     31
D28V10, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           1                            28
  CLUS_2                           6                            73
  CLUS_3                          16                            83
  CLUS_4                           9                            33
  CLUS_5                           2                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  3(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED        3     21     22      8     11
  DEL PEAK  3(2Q22.1) WILD-TYPE     12     91     34     51     42
D29V1, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           3                            12
  CLUS_2                          21                            91
  CLUS_3                          22                            34
  CLUS_4                           8                            51
  CLUS_5                          11                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       11     31     23
  DEL PEAK  3(2Q22.1) WILD-TYPE     61     84     85
D29V2, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          11                            61
  CLUS_2                          31                            84
  CLUS_3                          23                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       17      9     11
  DEL PEAK  3(2Q22.1) WILD-TYPE     42     32     53
D29V3, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          17                            42
  CLUS_2                           9                            32
  CLUS_3                          11                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED        7     10      8      7      5
  DEL PEAK  3(2Q22.1) WILD-TYPE     25     37     37     16     12
D29V4, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           7                            25
  CLUS_2                          10                            37
  CLUS_3                           8                            37
  CLUS_4                           7                            16
  CLUS_5                           5                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        8     29      9     19
  DEL PEAK  3(2Q22.1) WILD-TYPE     49     69     60     49
D29V5, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           8                            49
  CLUS_2                          29                            69
  CLUS_3                           9                            60
  CLUS_4                          19                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       10     45     10
  DEL PEAK  3(2Q22.1) WILD-TYPE     62    140     25
D29V6, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          10                            62
  CLUS_2                          45                           140
  CLUS_3                          10                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       24     15     26
  DEL PEAK  3(2Q22.1) WILD-TYPE     81     60     89
D29V7, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          24                            81
  CLUS_2                          15                            60
  CLUS_3                          26                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED        8     27     13      7     10
  DEL PEAK  3(2Q22.1) WILD-TYPE     52     68     59     18     33
D29V8, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           8                            52
  CLUS_2                          27                            68
  CLUS_3                          13                            59
  CLUS_4                           7                            18
  CLUS_5                          10                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       19     14     26
  DEL PEAK  3(2Q22.1) WILD-TYPE     82     65     76
D29V9, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          19                            82
  CLUS_2                          14                            65
  CLUS_3                          26                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED        4     14     26     10      5
  DEL PEAK  3(2Q22.1) WILD-TYPE     25     65     73     32     28
D29V10, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           4                            25
  CLUS_2                          14                            65
  CLUS_3                          26                            73
  CLUS_4                          10                            32
  CLUS_5                           5                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  4(2Q37.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.1) MUTATED        3     61     25     15     25
  DEL PEAK  4(2Q37.1) WILD-TYPE     12     51     31     44     28
D30V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                           3                            12
  CLUS_2                          61                            51
  CLUS_3                          25                            31
  CLUS_4                          15                            44
  CLUS_5                          25                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.1) MUTATED       17     57     55
  DEL PEAK  4(2Q37.1) WILD-TYPE     55     58     53
D30V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          17                            55
  CLUS_2                          57                            58
  CLUS_3                          55                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.1) MUTATED       27     19     22
  DEL PEAK  4(2Q37.1) WILD-TYPE     32     22     42
D30V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          27                            32
  CLUS_2                          19                            22
  CLUS_3                          22                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.1) MUTATED       15     16     22     12      3
  DEL PEAK  4(2Q37.1) WILD-TYPE     17     31     23     11     14
D30V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          15                            17
  CLUS_2                          16                            31
  CLUS_3                          22                            23
  CLUS_4                          12                            11
  CLUS_5                           3                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.1) MUTATED       14     51     21     42
  DEL PEAK  4(2Q37.1) WILD-TYPE     43     47     48     26
D30V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          14                            43
  CLUS_2                          51                            47
  CLUS_3                          21                            48
  CLUS_4                          42                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.1) MUTATED       14     93     21
  DEL PEAK  4(2Q37.1) WILD-TYPE     58     92     14
D30V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          14                            58
  CLUS_2                          93                            92
  CLUS_3                          21                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.1) MUTATED       36     30     63
  DEL PEAK  4(2Q37.1) WILD-TYPE     69     45     52
D30V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          36                            69
  CLUS_2                          30                            45
  CLUS_3                          63                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.1) MUTATED       13     48     32     11     25
  DEL PEAK  4(2Q37.1) WILD-TYPE     47     47     40     14     18
D30V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          13                            47
  CLUS_2                          48                            47
  CLUS_3                          32                            40
  CLUS_4                          11                            14
  CLUS_5                          25                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.1) MUTATED       36     30     57
  DEL PEAK  4(2Q37.1) WILD-TYPE     65     49     45
D30V9, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          36                            65
  CLUS_2                          30                            49
  CLUS_3                          57                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.1) MUTATED        3     33     53     24     10
  DEL PEAK  4(2Q37.1) WILD-TYPE     26     46     46     18     23
D30V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                           3                            26
  CLUS_2                          33                            46
  CLUS_3                          53                            46
  CLUS_4                          24                            18
  CLUS_5                          10                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  5(3P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P22.1) MUTATED       10     46     25      0     32
  DEL PEAK  5(3P22.1) WILD-TYPE      5     66     31     59     21
D31V1, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                          10                             5
  CLUS_2                          46                            66
  CLUS_3                          25                            31
  CLUS_4                           0                            59
  CLUS_5                          32                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.1) MUTATED       19     57     37
  DEL PEAK  5(3P22.1) WILD-TYPE     53     58     71
D31V2, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                          19                            53
  CLUS_2                          57                            58
  CLUS_3                          37                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.1) MUTATED       15     20     18
  DEL PEAK  5(3P22.1) WILD-TYPE     44     21     46
D31V3, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                          15                            44
  CLUS_2                          20                            21
  CLUS_3                          18                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P22.1) MUTATED        8      6     20     12      7
  DEL PEAK  5(3P22.1) WILD-TYPE     24     41     25     11     10
D31V4, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                           8                            24
  CLUS_2                           6                            41
  CLUS_3                          20                            25
  CLUS_4                          12                            11
  CLUS_5                           7                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P22.1) MUTATED       28     40     15     29
  DEL PEAK  5(3P22.1) WILD-TYPE     29     58     54     39
D31V5, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                          28                            29
  CLUS_2                          40                            58
  CLUS_3                          15                            54
  CLUS_4                          29                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.1) MUTATED       14     88     10
  DEL PEAK  5(3P22.1) WILD-TYPE     58     97     25
D31V6, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                          14                            58
  CLUS_2                          88                            97
  CLUS_3                          10                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.1) MUTATED       33     30     50
  DEL PEAK  5(3P22.1) WILD-TYPE     72     45     65
D31V7, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                          33                            72
  CLUS_2                          30                            45
  CLUS_3                          50                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P22.1) MUTATED       10     48     30     10     15
  DEL PEAK  5(3P22.1) WILD-TYPE     50     47     42     15     28
D31V8, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                          10                            50
  CLUS_2                          48                            47
  CLUS_3                          30                            42
  CLUS_4                          10                            15
  CLUS_5                          15                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.1) MUTATED       32     31     44
  DEL PEAK  5(3P22.1) WILD-TYPE     69     48     58
D31V9, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                          32                            69
  CLUS_2                          31                            48
  CLUS_3                          44                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P22.1) MUTATED        8     32     44     20      3
  DEL PEAK  5(3P22.1) WILD-TYPE     21     47     55     22     30
D31V10, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                           8                            21
  CLUS_2                          32                            47
  CLUS_3                          44                            55
  CLUS_4                          20                            22
  CLUS_5                           3                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  6(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P14.2) MUTATED       10     61     26      1     36
  DEL PEAK  6(3P14.2) WILD-TYPE      5     51     30     58     17
D32V1, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          10                             5
  CLUS_2                          61                            51
  CLUS_3                          26                            30
  CLUS_4                           1                            58
  CLUS_5                          36                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       21     66     47
  DEL PEAK  6(3P14.2) WILD-TYPE     51     49     61
D32V2, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          21                            51
  CLUS_2                          66                            49
  CLUS_3                          47                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       23     22     22
  DEL PEAK  6(3P14.2) WILD-TYPE     36     19     42
D32V3, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          23                            36
  CLUS_2                          22                            19
  CLUS_3                          22                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P14.2) MUTATED       11     12     24     12      8
  DEL PEAK  6(3P14.2) WILD-TYPE     21     35     21     11      9
D32V4, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          11                            21
  CLUS_2                          12                            35
  CLUS_3                          24                            21
  CLUS_4                          12                            11
  CLUS_5                           8                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P14.2) MUTATED       32     46     18     36
  DEL PEAK  6(3P14.2) WILD-TYPE     25     52     51     32
D32V5, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          32                            25
  CLUS_2                          46                            52
  CLUS_3                          18                            51
  CLUS_4                          36                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       17    102     13
  DEL PEAK  6(3P14.2) WILD-TYPE     55     83     22
D32V6, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          17                            55
  CLUS_2                         102                            83
  CLUS_3                          13                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       35     35     64
  DEL PEAK  6(3P14.2) WILD-TYPE     70     40     51
D32V7, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          35                            70
  CLUS_2                          35                            40
  CLUS_3                          64                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P14.2) MUTATED       13     54     34     13     20
  DEL PEAK  6(3P14.2) WILD-TYPE     47     41     38     12     23
D32V8, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          13                            47
  CLUS_2                          54                            41
  CLUS_3                          34                            38
  CLUS_4                          13                            12
  CLUS_5                          20                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       35     37     55
  DEL PEAK  6(3P14.2) WILD-TYPE     66     42     47
D32V9, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          35                            66
  CLUS_2                          37                            42
  CLUS_3                          55                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P14.2) MUTATED        9     39     54     21      4
  DEL PEAK  6(3P14.2) WILD-TYPE     20     40     45     21     29
D32V10, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           9                            20
  CLUS_2                          39                            40
  CLUS_3                          54                            45
  CLUS_4                          21                            21
  CLUS_5                           4                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  7(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4P16.3) MUTATED        6     72     28      7     14
  DEL PEAK  7(4P16.3) WILD-TYPE      9     40     28     52     39
D33V1, multiclass
        clus
vv       DEL PEAK  7(4P16.3) MUTATED DEL PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           6                             9
  CLUS_2                          72                            40
  CLUS_3                          28                            28
  CLUS_4                           7                            52
  CLUS_5                          14                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4P16.3) MUTATED       22     59     46
  DEL PEAK  7(4P16.3) WILD-TYPE     50     56     62
D33V2, multiclass
        clus
vv       DEL PEAK  7(4P16.3) MUTATED DEL PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          22                            50
  CLUS_2                          59                            56
  CLUS_3                          46                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4P16.3) MUTATED       25     15     26
  DEL PEAK  7(4P16.3) WILD-TYPE     34     26     38
D33V3, multiclass
        clus
vv       DEL PEAK  7(4P16.3) MUTATED DEL PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          25                            34
  CLUS_2                          15                            26
  CLUS_3                          26                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4P16.3) MUTATED       13     18     18     10      7
  DEL PEAK  7(4P16.3) WILD-TYPE     19     29     27     13     10
D33V4, multiclass
        clus
vv       DEL PEAK  7(4P16.3) MUTATED DEL PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          13                            19
  CLUS_2                          18                            29
  CLUS_3                          18                            27
  CLUS_4                          10                            13
  CLUS_5                           7                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4P16.3) MUTATED       28     49     17     31
  DEL PEAK  7(4P16.3) WILD-TYPE     29     49     52     37
D33V5, multiclass
        clus
vv       DEL PEAK  7(4P16.3) MUTATED DEL PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          28                            29
  CLUS_2                          49                            49
  CLUS_3                          17                            52
  CLUS_4                          31                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4P16.3) MUTATED       18     87     20
  DEL PEAK  7(4P16.3) WILD-TYPE     54     98     15
D33V6, multiclass
        clus
vv       DEL PEAK  7(4P16.3) MUTATED DEL PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          18                            54
  CLUS_2                          87                            98
  CLUS_3                          20                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4P16.3) MUTATED       39     32     56
  DEL PEAK  7(4P16.3) WILD-TYPE     66     43     59
D33V7, multiclass
        clus
vv       DEL PEAK  7(4P16.3) MUTATED DEL PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          39                            66
  CLUS_2                          32                            43
  CLUS_3                          56                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4P16.3) MUTATED       12     52     30     13     20
  DEL PEAK  7(4P16.3) WILD-TYPE     48     43     42     12     23
D33V8, multiclass
        clus
vv       DEL PEAK  7(4P16.3) MUTATED DEL PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          12                            48
  CLUS_2                          52                            43
  CLUS_3                          30                            42
  CLUS_4                          13                            12
  CLUS_5                          20                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4P16.3) MUTATED       41     31     48
  DEL PEAK  7(4P16.3) WILD-TYPE     60     48     54
D33V9, multiclass
        clus
vv       DEL PEAK  7(4P16.3) MUTATED DEL PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          41                            60
  CLUS_2                          31                            48
  CLUS_3                          48                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4P16.3) MUTATED        9     34     53     18      6
  DEL PEAK  7(4P16.3) WILD-TYPE     20     45     46     24     27
D33V10, multiclass
        clus
vv       DEL PEAK  7(4P16.3) MUTATED DEL PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           9                            20
  CLUS_2                          34                            45
  CLUS_3                          53                            46
  CLUS_4                          18                            24
  CLUS_5                           6                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  8(4Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q21.3) MUTATED        4     68     26      2      3
  DEL PEAK  8(4Q21.3) WILD-TYPE     11     44     30     57     50
D34V1, multiclass
        clus
vv       DEL PEAK  8(4Q21.3) MUTATED DEL PEAK  8(4Q21.3) WILD-TYPE
  CLUS_1                           4                            11
  CLUS_2                          68                            44
  CLUS_3                          26                            30
  CLUS_4                           2                            57
  CLUS_5                           3                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q21.3) MUTATED       20     36     47
  DEL PEAK  8(4Q21.3) WILD-TYPE     52     79     61
D34V2, multiclass
        clus
vv       DEL PEAK  8(4Q21.3) MUTATED DEL PEAK  8(4Q21.3) WILD-TYPE
  CLUS_1                          20                            52
  CLUS_2                          36                            79
  CLUS_3                          47                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q21.3) MUTATED       20     12     17
  DEL PEAK  8(4Q21.3) WILD-TYPE     39     29     47
D34V3, multiclass
        clus
vv       DEL PEAK  8(4Q21.3) MUTATED DEL PEAK  8(4Q21.3) WILD-TYPE
  CLUS_1                          20                            39
  CLUS_2                          12                            29
  CLUS_3                          17                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q21.3) MUTATED       11     11     14      7      6
  DEL PEAK  8(4Q21.3) WILD-TYPE     21     36     31     16     11
D34V4, multiclass
        clus
vv       DEL PEAK  8(4Q21.3) MUTATED DEL PEAK  8(4Q21.3) WILD-TYPE
  CLUS_1                          11                            21
  CLUS_2                          11                            36
  CLUS_3                          14                            31
  CLUS_4                           7                            16
  CLUS_5                           6                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q21.3) MUTATED       23     29     17     34
  DEL PEAK  8(4Q21.3) WILD-TYPE     34     69     52     34
D34V5, multiclass
        clus
vv       DEL PEAK  8(4Q21.3) MUTATED DEL PEAK  8(4Q21.3) WILD-TYPE
  CLUS_1                          23                            34
  CLUS_2                          29                            69
  CLUS_3                          17                            52
  CLUS_4                          34                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q21.3) MUTATED       21     61     21
  DEL PEAK  8(4Q21.3) WILD-TYPE     51    124     14
D34V6, multiclass
        clus
vv       DEL PEAK  8(4Q21.3) MUTATED DEL PEAK  8(4Q21.3) WILD-TYPE
  CLUS_1                          21                            51
  CLUS_2                          61                           124
  CLUS_3                          21                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q21.3) MUTATED       30     29     44
  DEL PEAK  8(4Q21.3) WILD-TYPE     75     46     71
D34V7, multiclass
        clus
vv       DEL PEAK  8(4Q21.3) MUTATED DEL PEAK  8(4Q21.3) WILD-TYPE
  CLUS_1                          30                            75
  CLUS_2                          29                            46
  CLUS_3                          44                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q21.3) MUTATED       16     34     24      8     21
  DEL PEAK  8(4Q21.3) WILD-TYPE     44     61     48     17     22
D34V8, multiclass
        clus
vv       DEL PEAK  8(4Q21.3) MUTATED DEL PEAK  8(4Q21.3) WILD-TYPE
  CLUS_1                          16                            44
  CLUS_2                          34                            61
  CLUS_3                          24                            48
  CLUS_4                           8                            17
  CLUS_5                          21                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q21.3) MUTATED       36     25     37
  DEL PEAK  8(4Q21.3) WILD-TYPE     65     54     65
D34V9, multiclass
        clus
vv       DEL PEAK  8(4Q21.3) MUTATED DEL PEAK  8(4Q21.3) WILD-TYPE
  CLUS_1                          36                            65
  CLUS_2                          25                            54
  CLUS_3                          37                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q21.3) MUTATED        9     29     31     21      8
  DEL PEAK  8(4Q21.3) WILD-TYPE     20     50     68     21     25
D34V10, multiclass
        clus
vv       DEL PEAK  8(4Q21.3) MUTATED DEL PEAK  8(4Q21.3) WILD-TYPE
  CLUS_1                           9                            20
  CLUS_2                          29                            50
  CLUS_3                          31                            68
  CLUS_4                          21                            21
  CLUS_5                           8                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  9(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q22.1) MUTATED        4     71     25      0      0
  DEL PEAK  9(4Q22.1) WILD-TYPE     11     41     31     59     53
D35V1, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                           4                            11
  CLUS_2                          71                            41
  CLUS_3                          25                            31
  CLUS_4                           0                            59
  CLUS_5                           0                            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q22.1) MUTATED       20     36     44
  DEL PEAK  9(4Q22.1) WILD-TYPE     52     79     64
D35V2, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                          20                            52
  CLUS_2                          36                            79
  CLUS_3                          44                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q22.1) MUTATED       19     11     15
  DEL PEAK  9(4Q22.1) WILD-TYPE     40     30     49
D35V3, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                          19                            40
  CLUS_2                          11                            30
  CLUS_3                          15                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q22.1) MUTATED       10     11     12      6      6
  DEL PEAK  9(4Q22.1) WILD-TYPE     22     36     33     17     11
D35V4, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                          10                            22
  CLUS_2                          11                            36
  CLUS_3                          12                            33
  CLUS_4                           6                            17
  CLUS_5                           6                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q22.1) MUTATED       23     28     17     32
  DEL PEAK  9(4Q22.1) WILD-TYPE     34     70     52     36
D35V5, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                          23                            34
  CLUS_2                          28                            70
  CLUS_3                          17                            52
  CLUS_4                          32                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q22.1) MUTATED       21     59     20
  DEL PEAK  9(4Q22.1) WILD-TYPE     51    126     15
D35V6, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                          21                            51
  CLUS_2                          59                           126
  CLUS_3                          20                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q22.1) MUTATED       31     26     43
  DEL PEAK  9(4Q22.1) WILD-TYPE     74     49     72
D35V7, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                          31                            74
  CLUS_2                          26                            49
  CLUS_3                          43                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q22.1) MUTATED       16     33     22      6     23
  DEL PEAK  9(4Q22.1) WILD-TYPE     44     62     50     19     20
D35V8, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                          16                            44
  CLUS_2                          33                            62
  CLUS_3                          22                            50
  CLUS_4                           6                            19
  CLUS_5                          23                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q22.1) MUTATED       37     23     35
  DEL PEAK  9(4Q22.1) WILD-TYPE     64     56     67
D35V9, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                          37                            64
  CLUS_2                          23                            56
  CLUS_3                          35                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q22.1) MUTATED        9     26     30     22      8
  DEL PEAK  9(4Q22.1) WILD-TYPE     20     53     69     20     25
D35V10, multiclass
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  CLUS_1                           9                            20
  CLUS_2                          26                            53
  CLUS_3                          30                            69
  CLUS_4                          22                            20
  CLUS_5                           8                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 10(4Q35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q35.2) MUTATED        4     77     25      6      2
  DEL PEAK 10(4Q35.2) WILD-TYPE     11     35     31     53     51
D36V1, multiclass
        clus
vv       DEL PEAK 10(4Q35.2) MUTATED DEL PEAK 10(4Q35.2) WILD-TYPE
  CLUS_1                           4                            11
  CLUS_2                          77                            35
  CLUS_3                          25                            31
  CLUS_4                           6                            53
  CLUS_5                           2                            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q35.2) MUTATED       24     41     49
  DEL PEAK 10(4Q35.2) WILD-TYPE     48     74     59
D36V2, multiclass
        clus
vv       DEL PEAK 10(4Q35.2) MUTATED DEL PEAK 10(4Q35.2) WILD-TYPE
  CLUS_1                          24                            48
  CLUS_2                          41                            74
  CLUS_3                          49                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q35.2) MUTATED       23     15     23
  DEL PEAK 10(4Q35.2) WILD-TYPE     36     26     41
D36V3, multiclass
        clus
vv       DEL PEAK 10(4Q35.2) MUTATED DEL PEAK 10(4Q35.2) WILD-TYPE
  CLUS_1                          23                            36
  CLUS_2                          15                            26
  CLUS_3                          23                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q35.2) MUTATED       12     18     16      9      6
  DEL PEAK 10(4Q35.2) WILD-TYPE     20     29     29     14     11
D36V4, multiclass
        clus
vv       DEL PEAK 10(4Q35.2) MUTATED DEL PEAK 10(4Q35.2) WILD-TYPE
  CLUS_1                          12                            20
  CLUS_2                          18                            29
  CLUS_3                          16                            29
  CLUS_4                           9                            14
  CLUS_5                           6                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q35.2) MUTATED       27     30     21     36
  DEL PEAK 10(4Q35.2) WILD-TYPE     30     68     48     32
D36V5, multiclass
        clus
vv       DEL PEAK 10(4Q35.2) MUTATED DEL PEAK 10(4Q35.2) WILD-TYPE
  CLUS_1                          27                            30
  CLUS_2                          30                            68
  CLUS_3                          21                            48
  CLUS_4                          36                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q35.2) MUTATED       24     67     23
  DEL PEAK 10(4Q35.2) WILD-TYPE     48    118     12
D36V6, multiclass
        clus
vv       DEL PEAK 10(4Q35.2) MUTATED DEL PEAK 10(4Q35.2) WILD-TYPE
  CLUS_1                          24                            48
  CLUS_2                          67                           118
  CLUS_3                          23                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q35.2) MUTATED       34     32     48
  DEL PEAK 10(4Q35.2) WILD-TYPE     71     43     67
D36V7, multiclass
        clus
vv       DEL PEAK 10(4Q35.2) MUTATED DEL PEAK 10(4Q35.2) WILD-TYPE
  CLUS_1                          34                            71
  CLUS_2                          32                            43
  CLUS_3                          48                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q35.2) MUTATED       19     34     29      8     24
  DEL PEAK 10(4Q35.2) WILD-TYPE     41     61     43     17     19
D36V8, multiclass
        clus
vv       DEL PEAK 10(4Q35.2) MUTATED DEL PEAK 10(4Q35.2) WILD-TYPE
  CLUS_1                          19                            41
  CLUS_2                          34                            61
  CLUS_3                          29                            43
  CLUS_4                           8                            17
  CLUS_5                          24                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q35.2) MUTATED       42     30     37
  DEL PEAK 10(4Q35.2) WILD-TYPE     59     49     65
D36V9, multiclass
        clus
vv       DEL PEAK 10(4Q35.2) MUTATED DEL PEAK 10(4Q35.2) WILD-TYPE
  CLUS_1                          42                            59
  CLUS_2                          30                            49
  CLUS_3                          37                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q35.2) MUTATED       12     32     31     26      8
  DEL PEAK 10(4Q35.2) WILD-TYPE     17     47     68     16     25
D36V10, multiclass
        clus
vv       DEL PEAK 10(4Q35.2) MUTATED DEL PEAK 10(4Q35.2) WILD-TYPE
  CLUS_1                          12                            17
  CLUS_2                          32                            47
  CLUS_3                          31                            68
  CLUS_4                          26                            16
  CLUS_5                           8                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 11(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q12.1) MUTATED        2     51      8      7      8
  DEL PEAK 11(5Q12.1) WILD-TYPE     13     61     48     52     45
D37V1, multiclass
        clus
vv       DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE
  CLUS_1                           2                            13
  CLUS_2                          51                            61
  CLUS_3                           8                            48
  CLUS_4                           7                            52
  CLUS_5                           8                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q12.1) MUTATED       16     31     29
  DEL PEAK 11(5Q12.1) WILD-TYPE     56     84     79
D37V2, multiclass
        clus
vv       DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE
  CLUS_1                          16                            56
  CLUS_2                          31                            84
  CLUS_3                          29                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q12.1) MUTATED       22     11     13
  DEL PEAK 11(5Q12.1) WILD-TYPE     37     30     51
D37V3, multiclass
        clus
vv       DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE
  CLUS_1                          22                            37
  CLUS_2                          11                            30
  CLUS_3                          13                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q12.1) MUTATED       12      6     12     10      6
  DEL PEAK 11(5Q12.1) WILD-TYPE     20     41     33     13     11
D37V4, multiclass
        clus
vv       DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE
  CLUS_1                          12                            20
  CLUS_2                           6                            41
  CLUS_3                          12                            33
  CLUS_4                          10                            13
  CLUS_5                           6                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q12.1) MUTATED       18     25     13     19
  DEL PEAK 11(5Q12.1) WILD-TYPE     39     73     56     49
D37V5, multiclass
        clus
vv       DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE
  CLUS_1                          18                            39
  CLUS_2                          25                            73
  CLUS_3                          13                            56
  CLUS_4                          19                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q12.1) MUTATED       18     49      8
  DEL PEAK 11(5Q12.1) WILD-TYPE     54    136     27
D37V6, multiclass
        clus
vv       DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE
  CLUS_1                          18                            54
  CLUS_2                          49                           136
  CLUS_3                           8                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q12.1) MUTATED       20     17     39
  DEL PEAK 11(5Q12.1) WILD-TYPE     85     58     76
D37V7, multiclass
        clus
vv       DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE
  CLUS_1                          20                            85
  CLUS_2                          17                            58
  CLUS_3                          39                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q12.1) MUTATED       12     22     19     10     13
  DEL PEAK 11(5Q12.1) WILD-TYPE     48     73     53     15     30
D37V8, multiclass
        clus
vv       DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE
  CLUS_1                          12                            48
  CLUS_2                          22                            73
  CLUS_3                          19                            53
  CLUS_4                          10                            15
  CLUS_5                          13                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q12.1) MUTATED       24     17     33
  DEL PEAK 11(5Q12.1) WILD-TYPE     77     62     69
D37V9, multiclass
        clus
vv       DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE
  CLUS_1                          24                            77
  CLUS_2                          17                            62
  CLUS_3                          33                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q12.1) MUTATED        9     26     21     13      5
  DEL PEAK 11(5Q12.1) WILD-TYPE     20     53     78     29     28
D37V10, multiclass
        clus
vv       DEL PEAK 11(5Q12.1) MUTATED DEL PEAK 11(5Q12.1) WILD-TYPE
  CLUS_1                           9                            20
  CLUS_2                          26                            53
  CLUS_3                          21                            78
  CLUS_4                          13                            29
  CLUS_5                           5                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 12(5Q35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q35.2) MUTATED        1     48      8      6      8
  DEL PEAK 12(5Q35.2) WILD-TYPE     14     64     48     53     45
D38V1, multiclass
        clus
vv       DEL PEAK 12(5Q35.2) MUTATED DEL PEAK 12(5Q35.2) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                          48                            64
  CLUS_3                           8                            48
  CLUS_4                           6                            53
  CLUS_5                           8                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q35.2) MUTATED       15     30     26
  DEL PEAK 12(5Q35.2) WILD-TYPE     57     85     82
D38V2, multiclass
        clus
vv       DEL PEAK 12(5Q35.2) MUTATED DEL PEAK 12(5Q35.2) WILD-TYPE
  CLUS_1                          15                            57
  CLUS_2                          30                            85
  CLUS_3                          26                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q35.2) MUTATED       21     12     18
  DEL PEAK 12(5Q35.2) WILD-TYPE     38     29     46
D38V3, multiclass
        clus
vv       DEL PEAK 12(5Q35.2) MUTATED DEL PEAK 12(5Q35.2) WILD-TYPE
  CLUS_1                          21                            38
  CLUS_2                          12                            29
  CLUS_3                          18                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q35.2) MUTATED       12     11     13      8      7
  DEL PEAK 12(5Q35.2) WILD-TYPE     20     36     32     15     10
D38V4, multiclass
        clus
vv       DEL PEAK 12(5Q35.2) MUTATED DEL PEAK 12(5Q35.2) WILD-TYPE
  CLUS_1                          12                            20
  CLUS_2                          11                            36
  CLUS_3                          13                            32
  CLUS_4                           8                            15
  CLUS_5                           7                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q35.2) MUTATED       13     25     14     17
  DEL PEAK 12(5Q35.2) WILD-TYPE     44     73     55     51
D38V5, multiclass
        clus
vv       DEL PEAK 12(5Q35.2) MUTATED DEL PEAK 12(5Q35.2) WILD-TYPE
  CLUS_1                          13                            44
  CLUS_2                          25                            73
  CLUS_3                          14                            55
  CLUS_4                          17                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q35.2) MUTATED       16     46      7
  DEL PEAK 12(5Q35.2) WILD-TYPE     56    139     28
D38V6, multiclass
        clus
vv       DEL PEAK 12(5Q35.2) MUTATED DEL PEAK 12(5Q35.2) WILD-TYPE
  CLUS_1                          16                            56
  CLUS_2                          46                           139
  CLUS_3                           7                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q35.2) MUTATED       18     16     37
  DEL PEAK 12(5Q35.2) WILD-TYPE     87     59     78
D38V7, multiclass
        clus
vv       DEL PEAK 12(5Q35.2) MUTATED DEL PEAK 12(5Q35.2) WILD-TYPE
  CLUS_1                          18                            87
  CLUS_2                          16                            59
  CLUS_3                          37                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q35.2) MUTATED       12     20     18      7     14
  DEL PEAK 12(5Q35.2) WILD-TYPE     48     75     54     18     29
D38V8, multiclass
        clus
vv       DEL PEAK 12(5Q35.2) MUTATED DEL PEAK 12(5Q35.2) WILD-TYPE
  CLUS_1                          12                            48
  CLUS_2                          20                            75
  CLUS_3                          18                            54
  CLUS_4                           7                            18
  CLUS_5                          14                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q35.2) MUTATED       23     15     30
  DEL PEAK 12(5Q35.2) WILD-TYPE     78     64     72
D38V9, multiclass
        clus
vv       DEL PEAK 12(5Q35.2) MUTATED DEL PEAK 12(5Q35.2) WILD-TYPE
  CLUS_1                          23                            78
  CLUS_2                          15                            64
  CLUS_3                          30                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q35.2) MUTATED        8     20     21     14      5
  DEL PEAK 12(5Q35.2) WILD-TYPE     21     59     78     28     28
D38V10, multiclass
        clus
vv       DEL PEAK 12(5Q35.2) MUTATED DEL PEAK 12(5Q35.2) WILD-TYPE
  CLUS_1                           8                            21
  CLUS_2                          20                            59
  CLUS_3                          21                            78
  CLUS_4                          14                            28
  CLUS_5                           5                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 13(6P24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6P24.2) MUTATED        1     14     13      4     14
  DEL PEAK 13(6P24.2) WILD-TYPE     14     98     43     55     39
D39V1, multiclass
        clus
vv       DEL PEAK 13(6P24.2) MUTATED DEL PEAK 13(6P24.2) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                          14                            98
  CLUS_3                          13                            43
  CLUS_4                           4                            55
  CLUS_5                          14                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6P24.2) MUTATED        6     24     16
  DEL PEAK 13(6P24.2) WILD-TYPE     66     91     92
D39V2, multiclass
        clus
vv       DEL PEAK 13(6P24.2) MUTATED DEL PEAK 13(6P24.2) WILD-TYPE
  CLUS_1                           6                            66
  CLUS_2                          24                            91
  CLUS_3                          16                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6P24.2) MUTATED        8     10     10
  DEL PEAK 13(6P24.2) WILD-TYPE     51     31     54
D39V3, multiclass
        clus
vv       DEL PEAK 13(6P24.2) MUTATED DEL PEAK 13(6P24.2) WILD-TYPE
  CLUS_1                           8                            51
  CLUS_2                          10                            31
  CLUS_3                          10                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6P24.2) MUTATED        2     10     11      2      3
  DEL PEAK 13(6P24.2) WILD-TYPE     30     37     34     21     14
D39V4, multiclass
        clus
vv       DEL PEAK 13(6P24.2) MUTATED DEL PEAK 13(6P24.2) WILD-TYPE
  CLUS_1                           2                            30
  CLUS_2                          10                            37
  CLUS_3                          11                            34
  CLUS_4                           2                            21
  CLUS_5                           3                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6P24.2) MUTATED        7     23      7      9
  DEL PEAK 13(6P24.2) WILD-TYPE     50     75     62     59
D39V5, multiclass
        clus
vv       DEL PEAK 13(6P24.2) MUTATED DEL PEAK 13(6P24.2) WILD-TYPE
  CLUS_1                           7                            50
  CLUS_2                          23                            75
  CLUS_3                           7                            62
  CLUS_4                           9                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6P24.2) MUTATED        5     36      5
  DEL PEAK 13(6P24.2) WILD-TYPE     67    149     30
D39V6, multiclass
        clus
vv       DEL PEAK 13(6P24.2) MUTATED DEL PEAK 13(6P24.2) WILD-TYPE
  CLUS_1                           5                            67
  CLUS_2                          36                           149
  CLUS_3                           5                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6P24.2) MUTATED       14     15     17
  DEL PEAK 13(6P24.2) WILD-TYPE     91     60     98
D39V7, multiclass
        clus
vv       DEL PEAK 13(6P24.2) MUTATED DEL PEAK 13(6P24.2) WILD-TYPE
  CLUS_1                          14                            91
  CLUS_2                          15                            60
  CLUS_3                          17                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6P24.2) MUTATED        4     22     12      5      3
  DEL PEAK 13(6P24.2) WILD-TYPE     56     73     60     20     40
D39V8, multiclass
        clus
vv       DEL PEAK 13(6P24.2) MUTATED DEL PEAK 13(6P24.2) WILD-TYPE
  CLUS_1                           4                            56
  CLUS_2                          22                            73
  CLUS_3                          12                            60
  CLUS_4                           5                            20
  CLUS_5                           3                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6P24.2) MUTATED       11     13     20
  DEL PEAK 13(6P24.2) WILD-TYPE     90     66     82
D39V9, multiclass
        clus
vv       DEL PEAK 13(6P24.2) MUTATED DEL PEAK 13(6P24.2) WILD-TYPE
  CLUS_1                          11                            90
  CLUS_2                          13                            66
  CLUS_3                          20                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6P24.2) MUTATED        3     12     20      7      2
  DEL PEAK 13(6P24.2) WILD-TYPE     26     67     79     35     31
D39V10, multiclass
        clus
vv       DEL PEAK 13(6P24.2) MUTATED DEL PEAK 13(6P24.2) WILD-TYPE
  CLUS_1                           3                            26
  CLUS_2                          12                            67
  CLUS_3                          20                            79
  CLUS_4                           7                            35
  CLUS_5                           2                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 14(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(6Q26) MUTATED        5     46     19      8     22
  DEL PEAK 14(6Q26) WILD-TYPE     10     66     37     51     31
D40V1, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                         5                          10
  CLUS_2                        46                          66
  CLUS_3                        19                          37
  CLUS_4                         8                          51
  CLUS_5                        22                          31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED       17     46     37
  DEL PEAK 14(6Q26) WILD-TYPE     55     69     71
D40V2, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        17                          55
  CLUS_2                        46                          69
  CLUS_3                        37                          71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED       20     16     19
  DEL PEAK 14(6Q26) WILD-TYPE     39     25     45
D40V3, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        20                          39
  CLUS_2                        16                          25
  CLUS_3                        19                          45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(6Q26) MUTATED        8     16     17      7      7
  DEL PEAK 14(6Q26) WILD-TYPE     24     31     28     16     10
D40V4, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                         8                          24
  CLUS_2                        16                          31
  CLUS_3                        17                          28
  CLUS_4                         7                          16
  CLUS_5                         7                          10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(6Q26) MUTATED       15     35     23     27
  DEL PEAK 14(6Q26) WILD-TYPE     42     63     46     41
D40V5, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        15                          42
  CLUS_2                        35                          63
  CLUS_3                        23                          46
  CLUS_4                        27                          41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED       18     66     16
  DEL PEAK 14(6Q26) WILD-TYPE     54    119     19
D40V6, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        18                          54
  CLUS_2                        66                         119
  CLUS_3                        16                          19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED       28     26     46
  DEL PEAK 14(6Q26) WILD-TYPE     77     49     69
D40V7, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        28                          77
  CLUS_2                        26                          49
  CLUS_3                        46                          69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(6Q26) MUTATED       15     33     23     11     18
  DEL PEAK 14(6Q26) WILD-TYPE     45     62     49     14     25
D40V8, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        15                          45
  CLUS_2                        33                          62
  CLUS_3                        23                          49
  CLUS_4                        11                          14
  CLUS_5                        18                          25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED       30     24     42
  DEL PEAK 14(6Q26) WILD-TYPE     71     55     60
D40V9, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        30                          71
  CLUS_2                        24                          55
  CLUS_3                        42                          60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(6Q26) MUTATED        8     23     36     20      9
  DEL PEAK 14(6Q26) WILD-TYPE     21     56     63     22     24
D40V10, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                         8                          21
  CLUS_2                        23                          56
  CLUS_3                        36                          63
  CLUS_4                        20                          22
  CLUS_5                         9                          24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 15(7Q34) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(7Q34) MUTATED        1     30     13     10      6
  DEL PEAK 15(7Q34) WILD-TYPE     14     82     43     49     47
D41V1, multiclass
        clus
vv       DEL PEAK 15(7Q34) MUTATED DEL PEAK 15(7Q34) WILD-TYPE
  CLUS_1                         1                          14
  CLUS_2                        30                          82
  CLUS_3                        13                          43
  CLUS_4                        10                          49
  CLUS_5                         6                          47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q34) MUTATED       19     23     18
  DEL PEAK 15(7Q34) WILD-TYPE     53     92     90
D41V2, multiclass
        clus
vv       DEL PEAK 15(7Q34) MUTATED DEL PEAK 15(7Q34) WILD-TYPE
  CLUS_1                        19                          53
  CLUS_2                        23                          92
  CLUS_3                        18                          90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q34) MUTATED       15      5     16
  DEL PEAK 15(7Q34) WILD-TYPE     44     36     48
D41V3, multiclass
        clus
vv       DEL PEAK 15(7Q34) MUTATED DEL PEAK 15(7Q34) WILD-TYPE
  CLUS_1                        15                          44
  CLUS_2                         5                          36
  CLUS_3                        16                          48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(7Q34) MUTATED        9      8      8      5      6
  DEL PEAK 15(7Q34) WILD-TYPE     23     39     37     18     11
D41V4, multiclass
        clus
vv       DEL PEAK 15(7Q34) MUTATED DEL PEAK 15(7Q34) WILD-TYPE
  CLUS_1                         9                          23
  CLUS_2                         8                          39
  CLUS_3                         8                          37
  CLUS_4                         5                          18
  CLUS_5                         6                          11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(7Q34) MUTATED        9     21     13     16
  DEL PEAK 15(7Q34) WILD-TYPE     48     77     56     52
D41V5, multiclass
        clus
vv       DEL PEAK 15(7Q34) MUTATED DEL PEAK 15(7Q34) WILD-TYPE
  CLUS_1                         9                          48
  CLUS_2                        21                          77
  CLUS_3                        13                          56
  CLUS_4                        16                          52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q34) MUTATED       17     35      7
  DEL PEAK 15(7Q34) WILD-TYPE     55    150     28
D41V6, multiclass
        clus
vv       DEL PEAK 15(7Q34) MUTATED DEL PEAK 15(7Q34) WILD-TYPE
  CLUS_1                        17                          55
  CLUS_2                        35                         150
  CLUS_3                         7                          28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q34) MUTATED       21     13     26
  DEL PEAK 15(7Q34) WILD-TYPE     84     62     89
D41V7, multiclass
        clus
vv       DEL PEAK 15(7Q34) MUTATED DEL PEAK 15(7Q34) WILD-TYPE
  CLUS_1                        21                          84
  CLUS_2                        13                          62
  CLUS_3                        26                          89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(7Q34) MUTATED       14     16     15      3     12
  DEL PEAK 15(7Q34) WILD-TYPE     46     79     57     22     31
D41V8, multiclass
        clus
vv       DEL PEAK 15(7Q34) MUTATED DEL PEAK 15(7Q34) WILD-TYPE
  CLUS_1                        14                          46
  CLUS_2                        16                          79
  CLUS_3                        15                          57
  CLUS_4                         3                          22
  CLUS_5                        12                          31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q34) MUTATED       21     11     24
  DEL PEAK 15(7Q34) WILD-TYPE     80     68     78
D41V9, multiclass
        clus
vv       DEL PEAK 15(7Q34) MUTATED DEL PEAK 15(7Q34) WILD-TYPE
  CLUS_1                        21                          80
  CLUS_2                        11                          68
  CLUS_3                        24                          78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(7Q34) MUTATED        8     15     16     12      5
  DEL PEAK 15(7Q34) WILD-TYPE     21     64     83     30     28
D41V10, multiclass
        clus
vv       DEL PEAK 15(7Q34) MUTATED DEL PEAK 15(7Q34) WILD-TYPE
  CLUS_1                         8                          21
  CLUS_2                        15                          64
  CLUS_3                        16                          83
  CLUS_4                        12                          30
  CLUS_5                         5                          28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 16(8P23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8P23.3) MUTATED        1     64      6     16     17
  DEL PEAK 16(8P23.3) WILD-TYPE     14     48     50     43     36
D42V1, multiclass
        clus
vv       DEL PEAK 16(8P23.3) MUTATED DEL PEAK 16(8P23.3) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                          64                            48
  CLUS_3                           6                            50
  CLUS_4                          16                            43
  CLUS_5                          17                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P23.3) MUTATED       25     43     36
  DEL PEAK 16(8P23.3) WILD-TYPE     47     72     72
D42V2, multiclass
        clus
vv       DEL PEAK 16(8P23.3) MUTATED DEL PEAK 16(8P23.3) WILD-TYPE
  CLUS_1                          25                            47
  CLUS_2                          43                            72
  CLUS_3                          36                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P23.3) MUTATED       18     19     22
  DEL PEAK 16(8P23.3) WILD-TYPE     41     22     42
D42V3, multiclass
        clus
vv       DEL PEAK 16(8P23.3) MUTATED DEL PEAK 16(8P23.3) WILD-TYPE
  CLUS_1                          18                            41
  CLUS_2                          19                            22
  CLUS_3                          22                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8P23.3) MUTATED        6     16     17     11      9
  DEL PEAK 16(8P23.3) WILD-TYPE     26     31     28     12      8
D42V4, multiclass
        clus
vv       DEL PEAK 16(8P23.3) MUTATED DEL PEAK 16(8P23.3) WILD-TYPE
  CLUS_1                           6                            26
  CLUS_2                          16                            31
  CLUS_3                          17                            28
  CLUS_4                          11                            12
  CLUS_5                           9                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(8P23.3) MUTATED       25     21     23     35
  DEL PEAK 16(8P23.3) WILD-TYPE     32     77     46     33
D42V5, multiclass
        clus
vv       DEL PEAK 16(8P23.3) MUTATED DEL PEAK 16(8P23.3) WILD-TYPE
  CLUS_1                          25                            32
  CLUS_2                          21                            77
  CLUS_3                          23                            46
  CLUS_4                          35                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P23.3) MUTATED       28     57     19
  DEL PEAK 16(8P23.3) WILD-TYPE     44    128     16
D42V6, multiclass
        clus
vv       DEL PEAK 16(8P23.3) MUTATED DEL PEAK 16(8P23.3) WILD-TYPE
  CLUS_1                          28                            44
  CLUS_2                          57                           128
  CLUS_3                          19                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P23.3) MUTATED       38     19     47
  DEL PEAK 16(8P23.3) WILD-TYPE     67     56     68
D42V7, multiclass
        clus
vv       DEL PEAK 16(8P23.3) MUTATED DEL PEAK 16(8P23.3) WILD-TYPE
  CLUS_1                          38                            67
  CLUS_2                          19                            56
  CLUS_3                          47                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8P23.3) MUTATED       24     26     20     11     23
  DEL PEAK 16(8P23.3) WILD-TYPE     36     69     52     14     20
D42V8, multiclass
        clus
vv       DEL PEAK 16(8P23.3) MUTATED DEL PEAK 16(8P23.3) WILD-TYPE
  CLUS_1                          24                            36
  CLUS_2                          26                            69
  CLUS_3                          20                            52
  CLUS_4                          11                            14
  CLUS_5                          23                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P23.3) MUTATED       40     18     44
  DEL PEAK 16(8P23.3) WILD-TYPE     61     61     58
D42V9, multiclass
        clus
vv       DEL PEAK 16(8P23.3) MUTATED DEL PEAK 16(8P23.3) WILD-TYPE
  CLUS_1                          40                            61
  CLUS_2                          18                            61
  CLUS_3                          44                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8P23.3) MUTATED       11     21     40     18     12
  DEL PEAK 16(8P23.3) WILD-TYPE     18     58     59     24     21
D42V10, multiclass
        clus
vv       DEL PEAK 16(8P23.3) MUTATED DEL PEAK 16(8P23.3) WILD-TYPE
  CLUS_1                          11                            18
  CLUS_2                          21                            58
  CLUS_3                          40                            59
  CLUS_4                          18                            24
  CLUS_5                          12                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 17(8P23.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(8P23.1) MUTATED        1     60      4     15     17
  DEL PEAK 17(8P23.1) WILD-TYPE     14     52     52     44     36
D43V1, multiclass
        clus
vv       DEL PEAK 17(8P23.1) MUTATED DEL PEAK 17(8P23.1) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                          60                            52
  CLUS_3                           4                            52
  CLUS_4                          15                            44
  CLUS_5                          17                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(8P23.1) MUTATED       23     39     35
  DEL PEAK 17(8P23.1) WILD-TYPE     49     76     73
D43V2, multiclass
        clus
vv       DEL PEAK 17(8P23.1) MUTATED DEL PEAK 17(8P23.1) WILD-TYPE
  CLUS_1                          23                            49
  CLUS_2                          39                            76
  CLUS_3                          35                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(8P23.1) MUTATED       18     17     22
  DEL PEAK 17(8P23.1) WILD-TYPE     41     24     42
D43V3, multiclass
        clus
vv       DEL PEAK 17(8P23.1) MUTATED DEL PEAK 17(8P23.1) WILD-TYPE
  CLUS_1                          18                            41
  CLUS_2                          17                            24
  CLUS_3                          22                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(8P23.1) MUTATED        6     16     15     11      9
  DEL PEAK 17(8P23.1) WILD-TYPE     26     31     30     12      8
D43V4, multiclass
        clus
vv       DEL PEAK 17(8P23.1) MUTATED DEL PEAK 17(8P23.1) WILD-TYPE
  CLUS_1                           6                            26
  CLUS_2                          16                            31
  CLUS_3                          15                            30
  CLUS_4                          11                            12
  CLUS_5                           9                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(8P23.1) MUTATED       24     20     22     31
  DEL PEAK 17(8P23.1) WILD-TYPE     33     78     47     37
D43V5, multiclass
        clus
vv       DEL PEAK 17(8P23.1) MUTATED DEL PEAK 17(8P23.1) WILD-TYPE
  CLUS_1                          24                            33
  CLUS_2                          20                            78
  CLUS_3                          22                            47
  CLUS_4                          31                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(8P23.1) MUTATED       26     55     16
  DEL PEAK 17(8P23.1) WILD-TYPE     46    130     19
D43V6, multiclass
        clus
vv       DEL PEAK 17(8P23.1) MUTATED DEL PEAK 17(8P23.1) WILD-TYPE
  CLUS_1                          26                            46
  CLUS_2                          55                           130
  CLUS_3                          16                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(8P23.1) MUTATED       35     16     46
  DEL PEAK 17(8P23.1) WILD-TYPE     70     59     69
D43V7, multiclass
        clus
vv       DEL PEAK 17(8P23.1) MUTATED DEL PEAK 17(8P23.1) WILD-TYPE
  CLUS_1                          35                            70
  CLUS_2                          16                            59
  CLUS_3                          46                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(8P23.1) MUTATED       22     26     17     10     22
  DEL PEAK 17(8P23.1) WILD-TYPE     38     69     55     15     21
D43V8, multiclass
        clus
vv       DEL PEAK 17(8P23.1) MUTATED DEL PEAK 17(8P23.1) WILD-TYPE
  CLUS_1                          22                            38
  CLUS_2                          26                            69
  CLUS_3                          17                            55
  CLUS_4                          10                            15
  CLUS_5                          22                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(8P23.1) MUTATED       36     16     44
  DEL PEAK 17(8P23.1) WILD-TYPE     65     63     58
D43V9, multiclass
        clus
vv       DEL PEAK 17(8P23.1) MUTATED DEL PEAK 17(8P23.1) WILD-TYPE
  CLUS_1                          36                            65
  CLUS_2                          16                            63
  CLUS_3                          44                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(8P23.1) MUTATED       10     19     40     16     11
  DEL PEAK 17(8P23.1) WILD-TYPE     19     60     59     26     22
D43V10, multiclass
        clus
vv       DEL PEAK 17(8P23.1) MUTATED DEL PEAK 17(8P23.1) WILD-TYPE
  CLUS_1                          10                            19
  CLUS_2                          19                            60
  CLUS_3                          40                            59
  CLUS_4                          16                            26
  CLUS_5                          11                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 18(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q23.31) MUTATED        2     45     18     10     11
  DEL PEAK 18(10Q23.31) WILD-TYPE     13     67     38     49     42
D44V1, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                             2                              13
  CLUS_2                            45                              67
  CLUS_3                            18                              38
  CLUS_4                            10                              49
  CLUS_5                            11                              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q23.31) MUTATED       26     31     29
  DEL PEAK 18(10Q23.31) WILD-TYPE     46     84     79
D44V2, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            26                              46
  CLUS_2                            31                              84
  CLUS_3                            29                              79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q23.31) MUTATED       15     15     15
  DEL PEAK 18(10Q23.31) WILD-TYPE     44     26     49
D44V3, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            15                              44
  CLUS_2                            15                              26
  CLUS_3                            15                              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q23.31) MUTATED        7     11     14      8      5
  DEL PEAK 18(10Q23.31) WILD-TYPE     25     36     31     15     12
D44V4, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                             7                              25
  CLUS_2                            11                              36
  CLUS_3                            14                              31
  CLUS_4                             8                              15
  CLUS_5                             5                              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q23.31) MUTATED       24     24     18     20
  DEL PEAK 18(10Q23.31) WILD-TYPE     33     74     51     48
D44V5, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            24                              33
  CLUS_2                            24                              74
  CLUS_3                            18                              51
  CLUS_4                            20                              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q23.31) MUTATED       25     49     12
  DEL PEAK 18(10Q23.31) WILD-TYPE     47    136     23
D44V6, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            25                              47
  CLUS_2                            49                             136
  CLUS_3                            12                              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q23.31) MUTATED       31     19     36
  DEL PEAK 18(10Q23.31) WILD-TYPE     74     56     79
D44V7, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            31                              74
  CLUS_2                            19                              56
  CLUS_3                            36                              79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q23.31) MUTATED       20     25     16     11     14
  DEL PEAK 18(10Q23.31) WILD-TYPE     40     70     56     14     29
D44V8, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            20                              40
  CLUS_2                            25                              70
  CLUS_3                            16                              56
  CLUS_4                            11                              14
  CLUS_5                            14                              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q23.31) MUTATED       34     20     29
  DEL PEAK 18(10Q23.31) WILD-TYPE     67     59     73
D44V9, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            34                              67
  CLUS_2                            20                              59
  CLUS_3                            29                              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q23.31) MUTATED       11     18     24     18     12
  DEL PEAK 18(10Q23.31) WILD-TYPE     18     61     75     24     21
D44V10, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            11                              18
  CLUS_2                            18                              61
  CLUS_3                            24                              75
  CLUS_4                            18                              24
  CLUS_5                            12                              21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 19(11P15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11P15.1) MUTATED        1     48     26      7     20
  DEL PEAK 19(11P15.1) WILD-TYPE     14     64     30     52     33
D45V1, multiclass
        clus
vv       DEL PEAK 19(11P15.1) MUTATED DEL PEAK 19(11P15.1) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                           48                             64
  CLUS_3                           26                             30
  CLUS_4                            7                             52
  CLUS_5                           20                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P15.1) MUTATED       21     49     32
  DEL PEAK 19(11P15.1) WILD-TYPE     51     66     76
D45V2, multiclass
        clus
vv       DEL PEAK 19(11P15.1) MUTATED DEL PEAK 19(11P15.1) WILD-TYPE
  CLUS_1                           21                             51
  CLUS_2                           49                             66
  CLUS_3                           32                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P15.1) MUTATED       12     20     18
  DEL PEAK 19(11P15.1) WILD-TYPE     47     21     46
D45V3, multiclass
        clus
vv       DEL PEAK 19(11P15.1) MUTATED DEL PEAK 19(11P15.1) WILD-TYPE
  CLUS_1                           12                             47
  CLUS_2                           20                             21
  CLUS_3                           18                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11P15.1) MUTATED        5      9     19      8      9
  DEL PEAK 19(11P15.1) WILD-TYPE     27     38     26     15      8
D45V4, multiclass
        clus
vv       DEL PEAK 19(11P15.1) MUTATED DEL PEAK 19(11P15.1) WILD-TYPE
  CLUS_1                            5                             27
  CLUS_2                            9                             38
  CLUS_3                           19                             26
  CLUS_4                            8                             15
  CLUS_5                            9                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11P15.1) MUTATED       22     39     14     27
  DEL PEAK 19(11P15.1) WILD-TYPE     35     59     55     41
D45V5, multiclass
        clus
vv       DEL PEAK 19(11P15.1) MUTATED DEL PEAK 19(11P15.1) WILD-TYPE
  CLUS_1                           22                             35
  CLUS_2                           39                             59
  CLUS_3                           14                             55
  CLUS_4                           27                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P15.1) MUTATED       16     75     11
  DEL PEAK 19(11P15.1) WILD-TYPE     56    110     24
D45V6, multiclass
        clus
vv       DEL PEAK 19(11P15.1) MUTATED DEL PEAK 19(11P15.1) WILD-TYPE
  CLUS_1                           16                             56
  CLUS_2                           75                            110
  CLUS_3                           11                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P15.1) MUTATED       32     25     45
  DEL PEAK 19(11P15.1) WILD-TYPE     73     50     70
D45V7, multiclass
        clus
vv       DEL PEAK 19(11P15.1) MUTATED DEL PEAK 19(11P15.1) WILD-TYPE
  CLUS_1                           32                             73
  CLUS_2                           25                             50
  CLUS_3                           45                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11P15.1) MUTATED       12     39     28      9     14
  DEL PEAK 19(11P15.1) WILD-TYPE     48     56     44     16     29
D45V8, multiclass
        clus
vv       DEL PEAK 19(11P15.1) MUTATED DEL PEAK 19(11P15.1) WILD-TYPE
  CLUS_1                           12                             48
  CLUS_2                           39                             56
  CLUS_3                           28                             44
  CLUS_4                            9                             16
  CLUS_5                           14                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P15.1) MUTATED       35     25     38
  DEL PEAK 19(11P15.1) WILD-TYPE     66     54     64
D45V9, multiclass
        clus
vv       DEL PEAK 19(11P15.1) MUTATED DEL PEAK 19(11P15.1) WILD-TYPE
  CLUS_1                           35                             66
  CLUS_2                           25                             54
  CLUS_3                           38                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11P15.1) MUTATED        7     29     44     12      6
  DEL PEAK 19(11P15.1) WILD-TYPE     22     50     55     30     27
D45V10, multiclass
        clus
vv       DEL PEAK 19(11P15.1) MUTATED DEL PEAK 19(11P15.1) WILD-TYPE
  CLUS_1                            7                             22
  CLUS_2                           29                             50
  CLUS_3                           44                             55
  CLUS_4                           12                             30
  CLUS_5                            6                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 20(11Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(11Q23.3) MUTATED        1     66     41     20     34
  DEL PEAK 20(11Q23.3) WILD-TYPE     14     46     15     39     19
D46V1, multiclass
        clus
vv       DEL PEAK 20(11Q23.3) MUTATED DEL PEAK 20(11Q23.3) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                           66                             46
  CLUS_3                           41                             15
  CLUS_4                           20                             39
  CLUS_5                           34                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11Q23.3) MUTATED       34     70     58
  DEL PEAK 20(11Q23.3) WILD-TYPE     38     45     50
D46V2, multiclass
        clus
vv       DEL PEAK 20(11Q23.3) MUTATED DEL PEAK 20(11Q23.3) WILD-TYPE
  CLUS_1                           34                             38
  CLUS_2                           70                             45
  CLUS_3                           58                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11Q23.3) MUTATED       30     20     37
  DEL PEAK 20(11Q23.3) WILD-TYPE     29     21     27
D46V3, multiclass
        clus
vv       DEL PEAK 20(11Q23.3) MUTATED DEL PEAK 20(11Q23.3) WILD-TYPE
  CLUS_1                           30                             29
  CLUS_2                           20                             21
  CLUS_3                           37                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(11Q23.3) MUTATED       13     26     24     17      7
  DEL PEAK 20(11Q23.3) WILD-TYPE     19     21     21      6     10
D46V4, multiclass
        clus
vv       DEL PEAK 20(11Q23.3) MUTATED DEL PEAK 20(11Q23.3) WILD-TYPE
  CLUS_1                           13                             19
  CLUS_2                           26                             21
  CLUS_3                           24                             21
  CLUS_4                           17                              6
  CLUS_5                            7                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11Q23.3) MUTATED       35     60     28     36
  DEL PEAK 20(11Q23.3) WILD-TYPE     22     38     41     32
D46V5, multiclass
        clus
vv       DEL PEAK 20(11Q23.3) MUTATED DEL PEAK 20(11Q23.3) WILD-TYPE
  CLUS_1                           35                             22
  CLUS_2                           60                             38
  CLUS_3                           28                             41
  CLUS_4                           36                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11Q23.3) MUTATED       27    112     20
  DEL PEAK 20(11Q23.3) WILD-TYPE     45     73     15
D46V6, multiclass
        clus
vv       DEL PEAK 20(11Q23.3) MUTATED DEL PEAK 20(11Q23.3) WILD-TYPE
  CLUS_1                           27                             45
  CLUS_2                          112                             73
  CLUS_3                           20                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11Q23.3) MUTATED       59     39     64
  DEL PEAK 20(11Q23.3) WILD-TYPE     46     36     51
D46V7, multiclass
        clus
vv       DEL PEAK 20(11Q23.3) MUTATED DEL PEAK 20(11Q23.3) WILD-TYPE
  CLUS_1                           59                             46
  CLUS_2                           39                             36
  CLUS_3                           64                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(11Q23.3) MUTATED       21     63     43     11     24
  DEL PEAK 20(11Q23.3) WILD-TYPE     39     32     29     14     19
D46V8, multiclass
        clus
vv       DEL PEAK 20(11Q23.3) MUTATED DEL PEAK 20(11Q23.3) WILD-TYPE
  CLUS_1                           21                             39
  CLUS_2                           63                             32
  CLUS_3                           43                             29
  CLUS_4                           11                             14
  CLUS_5                           24                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11Q23.3) MUTATED       51     40     65
  DEL PEAK 20(11Q23.3) WILD-TYPE     50     39     37
D46V9, multiclass
        clus
vv       DEL PEAK 20(11Q23.3) MUTATED DEL PEAK 20(11Q23.3) WILD-TYPE
  CLUS_1                           51                             50
  CLUS_2                           40                             39
  CLUS_3                           65                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(11Q23.3) MUTATED       10     48     62     24     12
  DEL PEAK 20(11Q23.3) WILD-TYPE     19     31     37     18     21
D46V10, multiclass
        clus
vv       DEL PEAK 20(11Q23.3) MUTATED DEL PEAK 20(11Q23.3) WILD-TYPE
  CLUS_1                           10                             19
  CLUS_2                           48                             31
  CLUS_3                           62                             37
  CLUS_4                           24                             18
  CLUS_5                           12                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 21(11Q25) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(11Q25) MUTATED        0     68     38     20     34
  DEL PEAK 21(11Q25) WILD-TYPE     15     44     18     39     19
D47V1, multiclass
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                          0                           15
  CLUS_2                         68                           44
  CLUS_3                         38                           18
  CLUS_4                         20                           39
  CLUS_5                         34                           19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q25) MUTATED       34     70     56
  DEL PEAK 21(11Q25) WILD-TYPE     38     45     52
D47V2, multiclass
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                         34                           38
  CLUS_2                         70                           45
  CLUS_3                         56                           52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q25) MUTATED       31     21     36
  DEL PEAK 21(11Q25) WILD-TYPE     28     20     28
D47V3, multiclass
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                         31                           28
  CLUS_2                         21                           20
  CLUS_3                         36                           28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(11Q25) MUTATED       13     26     23     17      9
  DEL PEAK 21(11Q25) WILD-TYPE     19     21     22      6      8
D47V4, multiclass
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                         13                           19
  CLUS_2                         26                           21
  CLUS_3                         23                           22
  CLUS_4                         17                            6
  CLUS_5                          9                            8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11Q25) MUTATED       33     61     27     37
  DEL PEAK 21(11Q25) WILD-TYPE     24     37     42     31
D47V5, multiclass
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                         33                           24
  CLUS_2                         61                           37
  CLUS_3                         27                           42
  CLUS_4                         37                           31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q25) MUTATED       27    110     21
  DEL PEAK 21(11Q25) WILD-TYPE     45     75     14
D47V6, multiclass
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                         27                           45
  CLUS_2                        110                           75
  CLUS_3                         21                           14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q25) MUTATED       56     39     65
  DEL PEAK 21(11Q25) WILD-TYPE     49     36     50
D47V7, multiclass
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                         56                           49
  CLUS_2                         39                           36
  CLUS_3                         65                           50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(11Q25) MUTATED       21     61     42     11     25
  DEL PEAK 21(11Q25) WILD-TYPE     39     34     30     14     18
D47V8, multiclass
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                         21                           39
  CLUS_2                         61                           34
  CLUS_3                         42                           30
  CLUS_4                         11                           14
  CLUS_5                         25                           18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q25) MUTATED       49     39     65
  DEL PEAK 21(11Q25) WILD-TYPE     52     40     37
D47V9, multiclass
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                         49                           52
  CLUS_2                         39                           40
  CLUS_3                         65                           37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(11Q25) MUTATED       10     47     61     23     12
  DEL PEAK 21(11Q25) WILD-TYPE     19     32     38     19     21
D47V10, multiclass
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                         10                           19
  CLUS_2                         47                           32
  CLUS_3                         61                           38
  CLUS_4                         23                           19
  CLUS_5                         12                           21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 22(13Q12.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(13Q12.11) MUTATED        4     52     18      5     19
  DEL PEAK 22(13Q12.11) WILD-TYPE     11     60     38     54     34
D48V1, multiclass
        clus
vv       DEL PEAK 22(13Q12.11) MUTATED DEL PEAK 22(13Q12.11) WILD-TYPE
  CLUS_1                             4                              11
  CLUS_2                            52                              60
  CLUS_3                            18                              38
  CLUS_4                             5                              54
  CLUS_5                            19                              34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(13Q12.11) MUTATED       12     43     43
  DEL PEAK 22(13Q12.11) WILD-TYPE     60     72     65
D48V2, multiclass
        clus
vv       DEL PEAK 22(13Q12.11) MUTATED DEL PEAK 22(13Q12.11) WILD-TYPE
  CLUS_1                            12                              60
  CLUS_2                            43                              72
  CLUS_3                            43                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(13Q12.11) MUTATED       22     14     17
  DEL PEAK 22(13Q12.11) WILD-TYPE     37     27     47
D48V3, multiclass
        clus
vv       DEL PEAK 22(13Q12.11) MUTATED DEL PEAK 22(13Q12.11) WILD-TYPE
  CLUS_1                            22                              37
  CLUS_2                            14                              27
  CLUS_3                            17                              47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(13Q12.11) MUTATED       17     11     13      7      5
  DEL PEAK 22(13Q12.11) WILD-TYPE     15     36     32     16     12
D48V4, multiclass
        clus
vv       DEL PEAK 22(13Q12.11) MUTATED DEL PEAK 22(13Q12.11) WILD-TYPE
  CLUS_1                            17                              15
  CLUS_2                            11                              36
  CLUS_3                            13                              32
  CLUS_4                             7                              16
  CLUS_5                             5                              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(13Q12.11) MUTATED       18     31     15     32
  DEL PEAK 22(13Q12.11) WILD-TYPE     39     67     54     36
D48V5, multiclass
        clus
vv       DEL PEAK 22(13Q12.11) MUTATED DEL PEAK 22(13Q12.11) WILD-TYPE
  CLUS_1                            18                              39
  CLUS_2                            31                              67
  CLUS_3                            15                              54
  CLUS_4                            32                              36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(13Q12.11) MUTATED       11     68     17
  DEL PEAK 22(13Q12.11) WILD-TYPE     61    117     18
D48V6, multiclass
        clus
vv       DEL PEAK 22(13Q12.11) MUTATED DEL PEAK 22(13Q12.11) WILD-TYPE
  CLUS_1                            11                              61
  CLUS_2                            68                             117
  CLUS_3                            17                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(13Q12.11) MUTATED       23     24     51
  DEL PEAK 22(13Q12.11) WILD-TYPE     82     51     64
D48V7, multiclass
        clus
vv       DEL PEAK 22(13Q12.11) MUTATED DEL PEAK 22(13Q12.11) WILD-TYPE
  CLUS_1                            23                              82
  CLUS_2                            24                              51
  CLUS_3                            51                              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(13Q12.11) MUTATED        9     33     25     11     20
  DEL PEAK 22(13Q12.11) WILD-TYPE     51     62     47     14     23
D48V8, multiclass
        clus
vv       DEL PEAK 22(13Q12.11) MUTATED DEL PEAK 22(13Q12.11) WILD-TYPE
  CLUS_1                             9                              51
  CLUS_2                            33                              62
  CLUS_3                            25                              47
  CLUS_4                            11                              14
  CLUS_5                            20                              23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(13Q12.11) MUTATED       26     23     43
  DEL PEAK 22(13Q12.11) WILD-TYPE     75     56     59
D48V9, multiclass
        clus
vv       DEL PEAK 22(13Q12.11) MUTATED DEL PEAK 22(13Q12.11) WILD-TYPE
  CLUS_1                            26                              75
  CLUS_2                            23                              56
  CLUS_3                            43                              59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(13Q12.11) MUTATED        6     29     36     18      3
  DEL PEAK 22(13Q12.11) WILD-TYPE     23     50     63     24     30
D48V10, multiclass
        clus
vv       DEL PEAK 22(13Q12.11) MUTATED DEL PEAK 22(13Q12.11) WILD-TYPE
  CLUS_1                             6                              23
  CLUS_2                            29                              50
  CLUS_3                            36                              63
  CLUS_4                            18                              24
  CLUS_5                             3                              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 23(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(13Q14.2) MUTATED        6     57     24      7     24
  DEL PEAK 23(13Q14.2) WILD-TYPE      9     55     32     52     29
D49V1, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                            6                              9
  CLUS_2                           57                             55
  CLUS_3                           24                             32
  CLUS_4                            7                             52
  CLUS_5                           24                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED       19     53     46
  DEL PEAK 23(13Q14.2) WILD-TYPE     53     62     62
D49V2, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           19                             53
  CLUS_2                           53                             62
  CLUS_3                           46                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED       22     17     24
  DEL PEAK 23(13Q14.2) WILD-TYPE     37     24     40
D49V3, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           22                             37
  CLUS_2                           17                             24
  CLUS_3                           24                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(13Q14.2) MUTATED       15     14     18      9      7
  DEL PEAK 23(13Q14.2) WILD-TYPE     17     33     27     14     10
D49V4, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           15                             17
  CLUS_2                           14                             33
  CLUS_3                           18                             27
  CLUS_4                            9                             14
  CLUS_5                            7                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q14.2) MUTATED       29     37     15     34
  DEL PEAK 23(13Q14.2) WILD-TYPE     28     61     54     34
D49V5, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           29                             28
  CLUS_2                           37                             61
  CLUS_3                           15                             54
  CLUS_4                           34                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED       16     83     16
  DEL PEAK 23(13Q14.2) WILD-TYPE     56    102     19
D49V6, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           16                             56
  CLUS_2                           83                            102
  CLUS_3                           16                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED       32     27     59
  DEL PEAK 23(13Q14.2) WILD-TYPE     73     48     56
D49V7, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           32                             73
  CLUS_2                           27                             48
  CLUS_3                           59                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(13Q14.2) MUTATED       11     43     27     13     24
  DEL PEAK 23(13Q14.2) WILD-TYPE     49     52     45     12     19
D49V8, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           11                             49
  CLUS_2                           43                             52
  CLUS_3                           27                             45
  CLUS_4                           13                             12
  CLUS_5                           24                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED       37     26     49
  DEL PEAK 23(13Q14.2) WILD-TYPE     64     53     53
D49V9, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           37                             64
  CLUS_2                           26                             53
  CLUS_3                           49                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(13Q14.2) MUTATED        9     32     45     21      5
  DEL PEAK 23(13Q14.2) WILD-TYPE     20     47     54     21     28
D49V10, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                            9                             20
  CLUS_2                           32                             47
  CLUS_3                           45                             54
  CLUS_4                           21                             21
  CLUS_5                            5                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 24(14Q32.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(14Q32.31) MUTATED        3     23      7      9      8
  DEL PEAK 24(14Q32.31) WILD-TYPE     12     89     49     50     45
D50V1, multiclass
        clus
vv       DEL PEAK 24(14Q32.31) MUTATED DEL PEAK 24(14Q32.31) WILD-TYPE
  CLUS_1                             3                              12
  CLUS_2                            23                              89
  CLUS_3                             7                              49
  CLUS_4                             9                              50
  CLUS_5                             8                              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q32.31) MUTATED       17     10     23
  DEL PEAK 24(14Q32.31) WILD-TYPE     55    105     85
D50V2, multiclass
        clus
vv       DEL PEAK 24(14Q32.31) MUTATED DEL PEAK 24(14Q32.31) WILD-TYPE
  CLUS_1                            17                              55
  CLUS_2                            10                             105
  CLUS_3                            23                              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q32.31) MUTATED        7      6     17
  DEL PEAK 24(14Q32.31) WILD-TYPE     52     35     47
D50V3, multiclass
        clus
vv       DEL PEAK 24(14Q32.31) MUTATED DEL PEAK 24(14Q32.31) WILD-TYPE
  CLUS_1                             7                              52
  CLUS_2                             6                              35
  CLUS_3                            17                              47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(14Q32.31) MUTATED        1     12      5      6      6
  DEL PEAK 24(14Q32.31) WILD-TYPE     31     35     40     17     11
D50V4, multiclass
        clus
vv       DEL PEAK 24(14Q32.31) MUTATED DEL PEAK 24(14Q32.31) WILD-TYPE
  CLUS_1                             1                              31
  CLUS_2                            12                              35
  CLUS_3                             5                              40
  CLUS_4                             6                              17
  CLUS_5                             6                              11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q32.31) MUTATED        9      9     20     11
  DEL PEAK 24(14Q32.31) WILD-TYPE     48     89     49     57
D50V5, multiclass
        clus
vv       DEL PEAK 24(14Q32.31) MUTATED DEL PEAK 24(14Q32.31) WILD-TYPE
  CLUS_1                             9                              48
  CLUS_2                             9                              89
  CLUS_3                            20                              49
  CLUS_4                            11                              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q32.31) MUTATED       17     22     10
  DEL PEAK 24(14Q32.31) WILD-TYPE     55    163     25
D50V6, multiclass
        clus
vv       DEL PEAK 24(14Q32.31) MUTATED DEL PEAK 24(14Q32.31) WILD-TYPE
  CLUS_1                            17                              55
  CLUS_2                            22                             163
  CLUS_3                            10                              25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q32.31) MUTATED       21     10     19
  DEL PEAK 24(14Q32.31) WILD-TYPE     84     65     96
D50V7, multiclass
        clus
vv       DEL PEAK 24(14Q32.31) MUTATED DEL PEAK 24(14Q32.31) WILD-TYPE
  CLUS_1                            21                              84
  CLUS_2                            10                              65
  CLUS_3                            19                              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(14Q32.31) MUTATED       13     19      4      4     10
  DEL PEAK 24(14Q32.31) WILD-TYPE     47     76     68     21     33
D50V8, multiclass
        clus
vv       DEL PEAK 24(14Q32.31) MUTATED DEL PEAK 24(14Q32.31) WILD-TYPE
  CLUS_1                            13                              47
  CLUS_2                            19                              76
  CLUS_3                             4                              68
  CLUS_4                             4                              21
  CLUS_5                            10                              33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q32.31) MUTATED       22     10     17
  DEL PEAK 24(14Q32.31) WILD-TYPE     79     69     85
D50V9, multiclass
        clus
vv       DEL PEAK 24(14Q32.31) MUTATED DEL PEAK 24(14Q32.31) WILD-TYPE
  CLUS_1                            22                              79
  CLUS_2                            10                              69
  CLUS_3                            17                              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(14Q32.31) MUTATED        7      8     13     12      9
  DEL PEAK 24(14Q32.31) WILD-TYPE     22     71     86     30     24
D50V10, multiclass
        clus
vv       DEL PEAK 24(14Q32.31) MUTATED DEL PEAK 24(14Q32.31) WILD-TYPE
  CLUS_1                             7                              22
  CLUS_2                             8                              71
  CLUS_3                            13                              86
  CLUS_4                            12                              30
  CLUS_5                             9                              24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 25(15Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(15Q21.1) MUTATED        1     37     14      9      9
  DEL PEAK 25(15Q21.1) WILD-TYPE     14     75     42     50     44
D51V1, multiclass
        clus
vv       DEL PEAK 25(15Q21.1) MUTATED DEL PEAK 25(15Q21.1) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                           37                             75
  CLUS_3                           14                             42
  CLUS_4                            9                             50
  CLUS_5                            9                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q21.1) MUTATED       21     26     23
  DEL PEAK 25(15Q21.1) WILD-TYPE     51     89     85
D51V2, multiclass
        clus
vv       DEL PEAK 25(15Q21.1) MUTATED DEL PEAK 25(15Q21.1) WILD-TYPE
  CLUS_1                           21                             51
  CLUS_2                           26                             89
  CLUS_3                           23                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q21.1) MUTATED       13      7     15
  DEL PEAK 25(15Q21.1) WILD-TYPE     46     34     49
D51V3, multiclass
        clus
vv       DEL PEAK 25(15Q21.1) MUTATED DEL PEAK 25(15Q21.1) WILD-TYPE
  CLUS_1                           13                             46
  CLUS_2                            7                             34
  CLUS_3                           15                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(15Q21.1) MUTATED        5     10      9      8      3
  DEL PEAK 25(15Q21.1) WILD-TYPE     27     37     36     15     14
D51V4, multiclass
        clus
vv       DEL PEAK 25(15Q21.1) MUTATED DEL PEAK 25(15Q21.1) WILD-TYPE
  CLUS_1                            5                             27
  CLUS_2                           10                             37
  CLUS_3                            9                             36
  CLUS_4                            8                             15
  CLUS_5                            3                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(15Q21.1) MUTATED       16     16     21     17
  DEL PEAK 25(15Q21.1) WILD-TYPE     41     82     48     51
D51V5, multiclass
        clus
vv       DEL PEAK 25(15Q21.1) MUTATED DEL PEAK 25(15Q21.1) WILD-TYPE
  CLUS_1                           16                             41
  CLUS_2                           16                             82
  CLUS_3                           21                             48
  CLUS_4                           17                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q21.1) MUTATED       24     36     10
  DEL PEAK 25(15Q21.1) WILD-TYPE     48    149     25
D51V6, multiclass
        clus
vv       DEL PEAK 25(15Q21.1) MUTATED DEL PEAK 25(15Q21.1) WILD-TYPE
  CLUS_1                           24                             48
  CLUS_2                           36                            149
  CLUS_3                           10                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q21.1) MUTATED       28      8     34
  DEL PEAK 25(15Q21.1) WILD-TYPE     77     67     81
D51V7, multiclass
        clus
vv       DEL PEAK 25(15Q21.1) MUTATED DEL PEAK 25(15Q21.1) WILD-TYPE
  CLUS_1                           28                             77
  CLUS_2                            8                             67
  CLUS_3                           34                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(15Q21.1) MUTATED       20     21      9      6     14
  DEL PEAK 25(15Q21.1) WILD-TYPE     40     74     63     19     29
D51V8, multiclass
        clus
vv       DEL PEAK 25(15Q21.1) MUTATED DEL PEAK 25(15Q21.1) WILD-TYPE
  CLUS_1                           20                             40
  CLUS_2                           21                             74
  CLUS_3                            9                             63
  CLUS_4                            6                             19
  CLUS_5                           14                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q21.1) MUTATED       32     11     25
  DEL PEAK 25(15Q21.1) WILD-TYPE     69     68     77
D51V9, multiclass
        clus
vv       DEL PEAK 25(15Q21.1) MUTATED DEL PEAK 25(15Q21.1) WILD-TYPE
  CLUS_1                           32                             69
  CLUS_2                           11                             68
  CLUS_3                           25                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(15Q21.1) MUTATED       11      9     24     13     11
  DEL PEAK 25(15Q21.1) WILD-TYPE     18     70     75     29     22
D51V10, multiclass
        clus
vv       DEL PEAK 25(15Q21.1) MUTATED DEL PEAK 25(15Q21.1) WILD-TYPE
  CLUS_1                           11                             18
  CLUS_2                            9                             70
  CLUS_3                           24                             75
  CLUS_4                           13                             29
  CLUS_5                           11                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 26(16Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(16Q11.2) MUTATED        0     25      5     15      8
  DEL PEAK 26(16Q11.2) WILD-TYPE     15     87     51     44     45
D52V1, multiclass
        clus
vv       DEL PEAK 26(16Q11.2) MUTATED DEL PEAK 26(16Q11.2) WILD-TYPE
  CLUS_1                            0                             15
  CLUS_2                           25                             87
  CLUS_3                            5                             51
  CLUS_4                           15                             44
  CLUS_5                            8                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q11.2) MUTATED       24     18     11
  DEL PEAK 26(16Q11.2) WILD-TYPE     48     97     97
D52V2, multiclass
        clus
vv       DEL PEAK 26(16Q11.2) MUTATED DEL PEAK 26(16Q11.2) WILD-TYPE
  CLUS_1                           24                             48
  CLUS_2                           18                             97
  CLUS_3                           11                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q11.2) MUTATED        9      8     15
  DEL PEAK 26(16Q11.2) WILD-TYPE     50     33     49
D52V3, multiclass
        clus
vv       DEL PEAK 26(16Q11.2) MUTATED DEL PEAK 26(16Q11.2) WILD-TYPE
  CLUS_1                            9                             50
  CLUS_2                            8                             33
  CLUS_3                           15                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(16Q11.2) MUTATED        4     14      6      3      5
  DEL PEAK 26(16Q11.2) WILD-TYPE     28     33     39     20     12
D52V4, multiclass
        clus
vv       DEL PEAK 26(16Q11.2) MUTATED DEL PEAK 26(16Q11.2) WILD-TYPE
  CLUS_1                            4                             28
  CLUS_2                           14                             33
  CLUS_3                            6                             39
  CLUS_4                            3                             20
  CLUS_5                            5                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(16Q11.2) MUTATED       11     12     20     10
  DEL PEAK 26(16Q11.2) WILD-TYPE     46     86     49     58
D52V5, multiclass
        clus
vv       DEL PEAK 26(16Q11.2) MUTATED DEL PEAK 26(16Q11.2) WILD-TYPE
  CLUS_1                           11                             46
  CLUS_2                           12                             86
  CLUS_3                           20                             49
  CLUS_4                           10                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q11.2) MUTATED       22     26      5
  DEL PEAK 26(16Q11.2) WILD-TYPE     50    159     30
D52V6, multiclass
        clus
vv       DEL PEAK 26(16Q11.2) MUTATED DEL PEAK 26(16Q11.2) WILD-TYPE
  CLUS_1                           22                             50
  CLUS_2                           26                            159
  CLUS_3                            5                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q11.2) MUTATED       28     11     14
  DEL PEAK 26(16Q11.2) WILD-TYPE     77     64    101
D52V7, multiclass
        clus
vv       DEL PEAK 26(16Q11.2) MUTATED DEL PEAK 26(16Q11.2) WILD-TYPE
  CLUS_1                           28                             77
  CLUS_2                           11                             64
  CLUS_3                           14                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(16Q11.2) MUTATED       18     14      6      7      8
  DEL PEAK 26(16Q11.2) WILD-TYPE     42     81     66     18     35
D52V8, multiclass
        clus
vv       DEL PEAK 26(16Q11.2) MUTATED DEL PEAK 26(16Q11.2) WILD-TYPE
  CLUS_1                           18                             42
  CLUS_2                           14                             81
  CLUS_3                            6                             66
  CLUS_4                            7                             18
  CLUS_5                            8                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q11.2) MUTATED       25     12     15
  DEL PEAK 26(16Q11.2) WILD-TYPE     76     67     87
D52V9, multiclass
        clus
vv       DEL PEAK 26(16Q11.2) MUTATED DEL PEAK 26(16Q11.2) WILD-TYPE
  CLUS_1                           25                             76
  CLUS_2                           12                             67
  CLUS_3                           15                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(16Q11.2) MUTATED        4      8     18      6     16
  DEL PEAK 26(16Q11.2) WILD-TYPE     25     71     81     36     17
D52V10, multiclass
        clus
vv       DEL PEAK 26(16Q11.2) MUTATED DEL PEAK 26(16Q11.2) WILD-TYPE
  CLUS_1                            4                             25
  CLUS_2                            8                             71
  CLUS_3                           18                             81
  CLUS_4                            6                             36
  CLUS_5                           16                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 27(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(16Q23.1) MUTATED        2     27      6     14      6
  DEL PEAK 27(16Q23.1) WILD-TYPE     13     85     50     45     47
D53V1, multiclass
        clus
vv       DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE
  CLUS_1                            2                             13
  CLUS_2                           27                             85
  CLUS_3                            6                             50
  CLUS_4                           14                             45
  CLUS_5                            6                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q23.1) MUTATED       23     17     15
  DEL PEAK 27(16Q23.1) WILD-TYPE     49     98     93
D53V2, multiclass
        clus
vv       DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE
  CLUS_1                           23                             49
  CLUS_2                           17                             98
  CLUS_3                           15                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q23.1) MUTATED       12      6     15
  DEL PEAK 27(16Q23.1) WILD-TYPE     47     35     49
D53V3, multiclass
        clus
vv       DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE
  CLUS_1                           12                             47
  CLUS_2                            6                             35
  CLUS_3                           15                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(16Q23.1) MUTATED        5     15      6      3      4
  DEL PEAK 27(16Q23.1) WILD-TYPE     27     32     39     20     13
D53V4, multiclass
        clus
vv       DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE
  CLUS_1                            5                             27
  CLUS_2                           15                             32
  CLUS_3                            6                             39
  CLUS_4                            3                             20
  CLUS_5                            4                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(16Q23.1) MUTATED       14      8     22     11
  DEL PEAK 27(16Q23.1) WILD-TYPE     43     90     47     57
D53V5, multiclass
        clus
vv       DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE
  CLUS_1                           14                             43
  CLUS_2                            8                             90
  CLUS_3                           22                             47
  CLUS_4                           11                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q23.1) MUTATED       25     23      7
  DEL PEAK 27(16Q23.1) WILD-TYPE     47    162     28
D53V6, multiclass
        clus
vv       DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE
  CLUS_1                           25                             47
  CLUS_2                           23                            162
  CLUS_3                            7                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q23.1) MUTATED       28     11     16
  DEL PEAK 27(16Q23.1) WILD-TYPE     77     64     99
D53V7, multiclass
        clus
vv       DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE
  CLUS_1                           28                             77
  CLUS_2                           11                             64
  CLUS_3                           16                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(16Q23.1) MUTATED       20     16      4      7      8
  DEL PEAK 27(16Q23.1) WILD-TYPE     40     79     68     18     35
D53V8, multiclass
        clus
vv       DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE
  CLUS_1                           20                             40
  CLUS_2                           16                             79
  CLUS_3                            4                             68
  CLUS_4                            7                             18
  CLUS_5                            8                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q23.1) MUTATED       28     13     13
  DEL PEAK 27(16Q23.1) WILD-TYPE     73     66     89
D53V9, multiclass
        clus
vv       DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE
  CLUS_1                           28                             73
  CLUS_2                           13                             66
  CLUS_3                           13                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(16Q23.1) MUTATED        6      8     17      6     17
  DEL PEAK 27(16Q23.1) WILD-TYPE     23     71     82     36     16
D53V10, multiclass
        clus
vv       DEL PEAK 27(16Q23.1) MUTATED DEL PEAK 27(16Q23.1) WILD-TYPE
  CLUS_1                            6                             23
  CLUS_2                            8                             71
  CLUS_3                           17                             82
  CLUS_4                            6                             36
  CLUS_5                           17                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 28(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(17P12) MUTATED        4     56     22     11     16
  DEL PEAK 28(17P12) WILD-TYPE     11     56     34     48     37
D54V1, multiclass
        clus
vv       DEL PEAK 28(17P12) MUTATED DEL PEAK 28(17P12) WILD-TYPE
  CLUS_1                          4                           11
  CLUS_2                         56                           56
  CLUS_3                         22                           34
  CLUS_4                         11                           48
  CLUS_5                         16                           37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(17P12) MUTATED       24     51     34
  DEL PEAK 28(17P12) WILD-TYPE     48     64     74
D54V2, multiclass
        clus
vv       DEL PEAK 28(17P12) MUTATED DEL PEAK 28(17P12) WILD-TYPE
  CLUS_1                         24                           48
  CLUS_2                         51                           64
  CLUS_3                         34                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(17P12) MUTATED       18     18     14
  DEL PEAK 28(17P12) WILD-TYPE     41     23     50
D54V3, multiclass
        clus
vv       DEL PEAK 28(17P12) MUTATED DEL PEAK 28(17P12) WILD-TYPE
  CLUS_1                         18                           41
  CLUS_2                         18                           23
  CLUS_3                         14                           50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(17P12) MUTATED       10     13     15      5      7
  DEL PEAK 28(17P12) WILD-TYPE     22     34     30     18     10
D54V4, multiclass
        clus
vv       DEL PEAK 28(17P12) MUTATED DEL PEAK 28(17P12) WILD-TYPE
  CLUS_1                         10                           22
  CLUS_2                         13                           34
  CLUS_3                         15                           30
  CLUS_4                          5                           18
  CLUS_5                          7                           10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(17P12) MUTATED       24     36     19     29
  DEL PEAK 28(17P12) WILD-TYPE     33     62     50     39
D54V5, multiclass
        clus
vv       DEL PEAK 28(17P12) MUTATED DEL PEAK 28(17P12) WILD-TYPE
  CLUS_1                         24                           33
  CLUS_2                         36                           62
  CLUS_3                         19                           50
  CLUS_4                         29                           39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(17P12) MUTATED       21     74     13
  DEL PEAK 28(17P12) WILD-TYPE     51    111     22
D54V6, multiclass
        clus
vv       DEL PEAK 28(17P12) MUTATED DEL PEAK 28(17P12) WILD-TYPE
  CLUS_1                         21                           51
  CLUS_2                         74                          111
  CLUS_3                         13                           22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(17P12) MUTATED       32     29     48
  DEL PEAK 28(17P12) WILD-TYPE     73     46     67
D54V7, multiclass
        clus
vv       DEL PEAK 28(17P12) MUTATED DEL PEAK 28(17P12) WILD-TYPE
  CLUS_1                         32                           73
  CLUS_2                         29                           46
  CLUS_3                         48                           67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(17P12) MUTATED       16     36     25     12     20
  DEL PEAK 28(17P12) WILD-TYPE     44     59     47     13     23
D54V8, multiclass
        clus
vv       DEL PEAK 28(17P12) MUTATED DEL PEAK 28(17P12) WILD-TYPE
  CLUS_1                         16                           44
  CLUS_2                         36                           59
  CLUS_3                         25                           47
  CLUS_4                         12                           13
  CLUS_5                         20                           23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(17P12) MUTATED       36     27     40
  DEL PEAK 28(17P12) WILD-TYPE     65     52     62
D54V9, multiclass
        clus
vv       DEL PEAK 28(17P12) MUTATED DEL PEAK 28(17P12) WILD-TYPE
  CLUS_1                         36                           65
  CLUS_2                         27                           52
  CLUS_3                         40                           62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(17P12) MUTATED        8     31     38     15     11
  DEL PEAK 28(17P12) WILD-TYPE     21     48     61     27     22
D54V10, multiclass
        clus
vv       DEL PEAK 28(17P12) MUTATED DEL PEAK 28(17P12) WILD-TYPE
  CLUS_1                          8                           21
  CLUS_2                         31                           48
  CLUS_3                         38                           61
  CLUS_4                         15                           27
  CLUS_5                         11                           22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 29(17Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(17Q25.3) MUTATED        2     22     13      2     12
  DEL PEAK 29(17Q25.3) WILD-TYPE     13     90     43     57     41
D55V1, multiclass
        clus
vv       DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE
  CLUS_1                            2                             13
  CLUS_2                           22                             90
  CLUS_3                           13                             43
  CLUS_4                            2                             57
  CLUS_5                           12                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(17Q25.3) MUTATED        4     35     12
  DEL PEAK 29(17Q25.3) WILD-TYPE     68     80     96
D55V2, multiclass
        clus
vv       DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE
  CLUS_1                            4                             68
  CLUS_2                           35                             80
  CLUS_3                           12                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(17Q25.3) MUTATED       11     10      9
  DEL PEAK 29(17Q25.3) WILD-TYPE     48     31     55
D55V3, multiclass
        clus
vv       DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE
  CLUS_1                           11                             48
  CLUS_2                           10                             31
  CLUS_3                            9                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(17Q25.3) MUTATED        6      7      9      5      3
  DEL PEAK 29(17Q25.3) WILD-TYPE     26     40     36     18     14
D55V4, multiclass
        clus
vv       DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE
  CLUS_1                            6                             26
  CLUS_2                            7                             40
  CLUS_3                            9                             36
  CLUS_4                            5                             18
  CLUS_5                            3                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(17Q25.3) MUTATED        4     22      2     22
  DEL PEAK 29(17Q25.3) WILD-TYPE     53     76     67     46
D55V5, multiclass
        clus
vv       DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE
  CLUS_1                            4                             53
  CLUS_2                           22                             76
  CLUS_3                            2                             67
  CLUS_4                           22                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(17Q25.3) MUTATED        3     39      8
  DEL PEAK 29(17Q25.3) WILD-TYPE     69    146     27
D55V6, multiclass
        clus
vv       DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE
  CLUS_1                            3                             69
  CLUS_2                           39                            146
  CLUS_3                            8                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(17Q25.3) MUTATED       10     10     31
  DEL PEAK 29(17Q25.3) WILD-TYPE     95     65     84
D55V7, multiclass
        clus
vv       DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE
  CLUS_1                           10                             95
  CLUS_2                           10                             65
  CLUS_3                           31                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(17Q25.3) MUTATED        1     23     12      6      9
  DEL PEAK 29(17Q25.3) WILD-TYPE     59     72     60     19     34
D55V8, multiclass
        clus
vv       DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE
  CLUS_1                            1                             59
  CLUS_2                           23                             72
  CLUS_3                           12                             60
  CLUS_4                            6                             19
  CLUS_5                            9                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(17Q25.3) MUTATED       11     12     24
  DEL PEAK 29(17Q25.3) WILD-TYPE     90     67     78
D55V9, multiclass
        clus
vv       DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE
  CLUS_1                           11                             90
  CLUS_2                           12                             67
  CLUS_3                           24                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(17Q25.3) MUTATED        2     12     22     10      1
  DEL PEAK 29(17Q25.3) WILD-TYPE     27     67     77     32     32
D55V10, multiclass
        clus
vv       DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE
  CLUS_1                            2                             27
  CLUS_2                           12                             67
  CLUS_3                           22                             77
  CLUS_4                           10                             32
  CLUS_5                            1                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 30(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(18Q21.2) MUTATED        1     44      6     17     14
  DEL PEAK 30(18Q21.2) WILD-TYPE     14     68     50     42     39
D56V1, multiclass
        clus
vv       DEL PEAK 30(18Q21.2) MUTATED DEL PEAK 30(18Q21.2) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                           44                             68
  CLUS_3                            6                             50
  CLUS_4                           17                             42
  CLUS_5                           14                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(18Q21.2) MUTATED       31     21     30
  DEL PEAK 30(18Q21.2) WILD-TYPE     41     94     78
D56V2, multiclass
        clus
vv       DEL PEAK 30(18Q21.2) MUTATED DEL PEAK 30(18Q21.2) WILD-TYPE
  CLUS_1                           31                             41
  CLUS_2                           21                             94
  CLUS_3                           30                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(18Q21.2) MUTATED       12      9     19
  DEL PEAK 30(18Q21.2) WILD-TYPE     47     32     45
D56V3, multiclass
        clus
vv       DEL PEAK 30(18Q21.2) MUTATED DEL PEAK 30(18Q21.2) WILD-TYPE
  CLUS_1                           12                             47
  CLUS_2                            9                             32
  CLUS_3                           19                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(18Q21.2) MUTATED        5     15      7     10      3
  DEL PEAK 30(18Q21.2) WILD-TYPE     27     32     38     13     14
D56V4, multiclass
        clus
vv       DEL PEAK 30(18Q21.2) MUTATED DEL PEAK 30(18Q21.2) WILD-TYPE
  CLUS_1                            5                             27
  CLUS_2                           15                             32
  CLUS_3                            7                             38
  CLUS_4                           10                             13
  CLUS_5                            3                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(18Q21.2) MUTATED       13      9     31     29
  DEL PEAK 30(18Q21.2) WILD-TYPE     44     89     38     39
D56V5, multiclass
        clus
vv       DEL PEAK 30(18Q21.2) MUTATED DEL PEAK 30(18Q21.2) WILD-TYPE
  CLUS_1                           13                             44
  CLUS_2                            9                             89
  CLUS_3                           31                             38
  CLUS_4                           29                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(18Q21.2) MUTATED       32     35     15
  DEL PEAK 30(18Q21.2) WILD-TYPE     40    150     20
D56V6, multiclass
        clus
vv       DEL PEAK 30(18Q21.2) MUTATED DEL PEAK 30(18Q21.2) WILD-TYPE
  CLUS_1                           32                             40
  CLUS_2                           35                            150
  CLUS_3                           15                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(18Q21.2) MUTATED       32     12     38
  DEL PEAK 30(18Q21.2) WILD-TYPE     73     63     77
D56V7, multiclass
        clus
vv       DEL PEAK 30(18Q21.2) MUTATED DEL PEAK 30(18Q21.2) WILD-TYPE
  CLUS_1                           32                             73
  CLUS_2                           12                             63
  CLUS_3                           38                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(18Q21.2) MUTATED       29     18     11      4     20
  DEL PEAK 30(18Q21.2) WILD-TYPE     31     77     61     21     23
D56V8, multiclass
        clus
vv       DEL PEAK 30(18Q21.2) MUTATED DEL PEAK 30(18Q21.2) WILD-TYPE
  CLUS_1                           29                             31
  CLUS_2                           18                             77
  CLUS_3                           11                             61
  CLUS_4                            4                             21
  CLUS_5                           20                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(18Q21.2) MUTATED       38     12     32
  DEL PEAK 30(18Q21.2) WILD-TYPE     63     67     70
D56V9, multiclass
        clus
vv       DEL PEAK 30(18Q21.2) MUTATED DEL PEAK 30(18Q21.2) WILD-TYPE
  CLUS_1                           38                             63
  CLUS_2                           12                             67
  CLUS_3                           32                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(18Q21.2) MUTATED        6     11     25     19     21
  DEL PEAK 30(18Q21.2) WILD-TYPE     23     68     74     23     12
D56V10, multiclass
        clus
vv       DEL PEAK 30(18Q21.2) MUTATED DEL PEAK 30(18Q21.2) WILD-TYPE
  CLUS_1                            6                             23
  CLUS_2                           11                             68
  CLUS_3                           25                             74
  CLUS_4                           19                             23
  CLUS_5                           21                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 31(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(19P13.3) MUTATED        3     63     13      4     22
  DEL PEAK 31(19P13.3) WILD-TYPE     12     49     43     55     31
D57V1, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                            3                             12
  CLUS_2                           63                             49
  CLUS_3                           13                             43
  CLUS_4                            4                             55
  CLUS_5                           22                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19P13.3) MUTATED       25     41     39
  DEL PEAK 31(19P13.3) WILD-TYPE     47     74     69
D57V2, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           25                             47
  CLUS_2                           41                             74
  CLUS_3                           39                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19P13.3) MUTATED       25     13     20
  DEL PEAK 31(19P13.3) WILD-TYPE     34     28     44
D57V3, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           25                             34
  CLUS_2                           13                             28
  CLUS_3                           20                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(19P13.3) MUTATED       11     11     15     12      9
  DEL PEAK 31(19P13.3) WILD-TYPE     21     36     30     11      8
D57V4, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           11                             21
  CLUS_2                           11                             36
  CLUS_3                           15                             30
  CLUS_4                           12                             11
  CLUS_5                            9                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(19P13.3) MUTATED       18     22     25     39
  DEL PEAK 31(19P13.3) WILD-TYPE     39     76     44     29
D57V5, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           18                             39
  CLUS_2                           22                             76
  CLUS_3                           25                             44
  CLUS_4                           39                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19P13.3) MUTATED       25     53     26
  DEL PEAK 31(19P13.3) WILD-TYPE     47    132      9
D57V6, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           25                             47
  CLUS_2                           53                            132
  CLUS_3                           26                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19P13.3) MUTATED       40     17     48
  DEL PEAK 31(19P13.3) WILD-TYPE     65     58     67
D57V7, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           40                             65
  CLUS_2                           17                             58
  CLUS_3                           48                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(19P13.3) MUTATED       17     36     13     13     26
  DEL PEAK 31(19P13.3) WILD-TYPE     43     59     59     12     17
D57V8, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           17                             43
  CLUS_2                           36                             59
  CLUS_3                           13                             59
  CLUS_4                           13                             12
  CLUS_5                           26                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19P13.3) MUTATED       40     18     43
  DEL PEAK 31(19P13.3) WILD-TYPE     61     61     59
D57V9, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           40                             61
  CLUS_2                           18                             61
  CLUS_3                           43                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(19P13.3) MUTATED       10     18     37     26     10
  DEL PEAK 31(19P13.3) WILD-TYPE     19     61     62     16     23
D57V10, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           10                             19
  CLUS_2                           18                             61
  CLUS_3                           37                             62
  CLUS_4                           26                             16
  CLUS_5                           10                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 32(19Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(19Q13.33) MUTATED        1     18      2      5     12
  DEL PEAK 32(19Q13.33) WILD-TYPE     14     94     54     54     41
D58V1, multiclass
        clus
vv       DEL PEAK 32(19Q13.33) MUTATED DEL PEAK 32(19Q13.33) WILD-TYPE
  CLUS_1                             1                              14
  CLUS_2                            18                              94
  CLUS_3                             2                              54
  CLUS_4                             5                              54
  CLUS_5                            12                              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(19Q13.33) MUTATED       13     18      7
  DEL PEAK 32(19Q13.33) WILD-TYPE     59     97    101
D58V2, multiclass
        clus
vv       DEL PEAK 32(19Q13.33) MUTATED DEL PEAK 32(19Q13.33) WILD-TYPE
  CLUS_1                            13                              59
  CLUS_2                            18                              97
  CLUS_3                             7                             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(19Q13.33) MUTATED        3      5      6
  DEL PEAK 32(19Q13.33) WILD-TYPE     56     36     58
D58V3, multiclass
        clus
vv       DEL PEAK 32(19Q13.33) MUTATED DEL PEAK 32(19Q13.33) WILD-TYPE
  CLUS_1                             3                              56
  CLUS_2                             5                              36
  CLUS_3                             6                              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(19Q13.33) MUTATED        1      6      3      2      2
  DEL PEAK 32(19Q13.33) WILD-TYPE     31     41     42     21     15
D58V4, multiclass
        clus
vv       DEL PEAK 32(19Q13.33) MUTATED DEL PEAK 32(19Q13.33) WILD-TYPE
  CLUS_1                             1                              31
  CLUS_2                             6                              41
  CLUS_3                             3                              42
  CLUS_4                             2                              21
  CLUS_5                             2                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(19Q13.33) MUTATED        8      8     14      8
  DEL PEAK 32(19Q13.33) WILD-TYPE     49     90     55     60
D58V5, multiclass
        clus
vv       DEL PEAK 32(19Q13.33) MUTATED DEL PEAK 32(19Q13.33) WILD-TYPE
  CLUS_1                             8                              49
  CLUS_2                             8                              90
  CLUS_3                            14                              55
  CLUS_4                             8                              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(19Q13.33) MUTATED       14     21      3
  DEL PEAK 32(19Q13.33) WILD-TYPE     58    164     32
D58V6, multiclass
        clus
vv       DEL PEAK 32(19Q13.33) MUTATED DEL PEAK 32(19Q13.33) WILD-TYPE
  CLUS_1                            14                              58
  CLUS_2                            21                             164
  CLUS_3                             3                              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(19Q13.33) MUTATED       18      5     15
  DEL PEAK 32(19Q13.33) WILD-TYPE     87     70    100
D58V7, multiclass
        clus
vv       DEL PEAK 32(19Q13.33) MUTATED DEL PEAK 32(19Q13.33) WILD-TYPE
  CLUS_1                            18                              87
  CLUS_2                             5                              70
  CLUS_3                            15                             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(19Q13.33) MUTATED       10     16      4      2      6
  DEL PEAK 32(19Q13.33) WILD-TYPE     50     79     68     23     37
D58V8, multiclass
        clus
vv       DEL PEAK 32(19Q13.33) MUTATED DEL PEAK 32(19Q13.33) WILD-TYPE
  CLUS_1                            10                              50
  CLUS_2                            16                              79
  CLUS_3                             4                              68
  CLUS_4                             2                              23
  CLUS_5                             6                              37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(19Q13.33) MUTATED       18      5     15
  DEL PEAK 32(19Q13.33) WILD-TYPE     83     74     87
D58V9, multiclass
        clus
vv       DEL PEAK 32(19Q13.33) MUTATED DEL PEAK 32(19Q13.33) WILD-TYPE
  CLUS_1                            18                              83
  CLUS_2                             5                              74
  CLUS_3                            15                              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(19Q13.33) MUTATED        4      5     19      2      8
  DEL PEAK 32(19Q13.33) WILD-TYPE     25     74     80     40     25
D58V10, multiclass
        clus
vv       DEL PEAK 32(19Q13.33) MUTATED DEL PEAK 32(19Q13.33) WILD-TYPE
  CLUS_1                             4                              25
  CLUS_2                             5                              74
  CLUS_3                            19                              80
  CLUS_4                             2                              40
  CLUS_5                             8                              25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 33(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(20P12.1) MUTATED        1     14      4      7     10
  DEL PEAK 33(20P12.1) WILD-TYPE     14     98     52     52     43
D59V1, multiclass
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                           14                             98
  CLUS_3                            4                             52
  CLUS_4                            7                             52
  CLUS_5                           10                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(20P12.1) MUTATED        8     13     15
  DEL PEAK 33(20P12.1) WILD-TYPE     64    102     93
D59V2, multiclass
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  CLUS_1                            8                             64
  CLUS_2                           13                            102
  CLUS_3                           15                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(20P12.1) MUTATED        8      6      4
  DEL PEAK 33(20P12.1) WILD-TYPE     51     35     60
D59V3, multiclass
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  CLUS_1                            8                             51
  CLUS_2                            6                             35
  CLUS_3                            4                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(20P12.1) MUTATED        4      4      4      6      0
  DEL PEAK 33(20P12.1) WILD-TYPE     28     43     41     17     17
D59V4, multiclass
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  CLUS_1                            4                             28
  CLUS_2                            4                             43
  CLUS_3                            4                             41
  CLUS_4                            6                             17
  CLUS_5                            0                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(20P12.1) MUTATED        2      8     11     15
  DEL PEAK 33(20P12.1) WILD-TYPE     55     90     58     53
D59V5, multiclass
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  CLUS_1                            2                             55
  CLUS_2                            8                             90
  CLUS_3                           11                             58
  CLUS_4                           15                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(20P12.1) MUTATED        9     19      8
  DEL PEAK 33(20P12.1) WILD-TYPE     63    166     27
D59V6, multiclass
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  CLUS_1                            9                             63
  CLUS_2                           19                            166
  CLUS_3                            8                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(20P12.1) MUTATED        8      8     20
  DEL PEAK 33(20P12.1) WILD-TYPE     97     67     95
D59V7, multiclass
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  CLUS_1                            8                             97
  CLUS_2                            8                             67
  CLUS_3                           20                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(20P12.1) MUTATED        9      8      7      2     10
  DEL PEAK 33(20P12.1) WILD-TYPE     51     87     65     23     33
D59V8, multiclass
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  CLUS_1                            9                             51
  CLUS_2                            8                             87
  CLUS_3                            7                             65
  CLUS_4                            2                             23
  CLUS_5                           10                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(20P12.1) MUTATED        6      6     22
  DEL PEAK 33(20P12.1) WILD-TYPE     95     73     80
D59V9, multiclass
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  CLUS_1                            6                             95
  CLUS_2                            6                             73
  CLUS_3                           22                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(20P12.1) MUTATED        1      7      7     12      7
  DEL PEAK 33(20P12.1) WILD-TYPE     28     72     92     30     26
D59V10, multiclass
        clus
vv       DEL PEAK 33(20P12.1) MUTATED DEL PEAK 33(20P12.1) WILD-TYPE
  CLUS_1                            1                             28
  CLUS_2                            7                             72
  CLUS_3                            7                             92
  CLUS_4                           12                             30
  CLUS_5                            7                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 34(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(21Q11.2) MUTATED        2     35      9      7      5
  DEL PEAK 34(21Q11.2) WILD-TYPE     13     77     47     52     48
D60V1, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                            2                             13
  CLUS_2                           35                             77
  CLUS_3                            9                             47
  CLUS_4                            7                             52
  CLUS_5                            5                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(21Q11.2) MUTATED       13     20     25
  DEL PEAK 34(21Q11.2) WILD-TYPE     59     95     83
D60V2, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                           13                             59
  CLUS_2                           20                             95
  CLUS_3                           25                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(21Q11.2) MUTATED       14      4     11
  DEL PEAK 34(21Q11.2) WILD-TYPE     45     37     53
D60V3, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                           14                             45
  CLUS_2                            4                             37
  CLUS_3                           11                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(21Q11.2) MUTATED        6      7      2      8      6
  DEL PEAK 34(21Q11.2) WILD-TYPE     26     40     43     15     11
D60V4, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                            6                             26
  CLUS_2                            7                             40
  CLUS_3                            2                             43
  CLUS_4                            8                             15
  CLUS_5                            6                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(21Q11.2) MUTATED       16     13     11     18
  DEL PEAK 34(21Q11.2) WILD-TYPE     41     85     58     50
D60V5, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                           16                             41
  CLUS_2                           13                             85
  CLUS_3                           11                             58
  CLUS_4                           18                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(21Q11.2) MUTATED       14     30     14
  DEL PEAK 34(21Q11.2) WILD-TYPE     58    155     21
D60V6, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                           14                             58
  CLUS_2                           30                            155
  CLUS_3                           14                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(21Q11.2) MUTATED       19     13     26
  DEL PEAK 34(21Q11.2) WILD-TYPE     86     62     89
D60V7, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                           19                             86
  CLUS_2                           13                             62
  CLUS_3                           26                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(21Q11.2) MUTATED        9     17     12      8     12
  DEL PEAK 34(21Q11.2) WILD-TYPE     51     78     60     17     31
D60V8, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                            9                             51
  CLUS_2                           17                             78
  CLUS_3                           12                             60
  CLUS_4                            8                             17
  CLUS_5                           12                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(21Q11.2) MUTATED       23     14     19
  DEL PEAK 34(21Q11.2) WILD-TYPE     78     65     83
D60V9, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                           23                             78
  CLUS_2                           14                             65
  CLUS_3                           19                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(21Q11.2) MUTATED        8     18     15     11      4
  DEL PEAK 34(21Q11.2) WILD-TYPE     21     61     84     31     29
D60V10, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                            8                             21
  CLUS_2                           18                             61
  CLUS_3                           15                             84
  CLUS_4                           11                             31
  CLUS_5                            4                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 35(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(22Q13.32) MUTATED        4     46     15      8     14
  DEL PEAK 35(22Q13.32) WILD-TYPE     11     66     41     51     39
D61V1, multiclass
        clus
vv       DEL PEAK 35(22Q13.32) MUTATED DEL PEAK 35(22Q13.32) WILD-TYPE
  CLUS_1                             4                              11
  CLUS_2                            46                              66
  CLUS_3                            15                              41
  CLUS_4                             8                              51
  CLUS_5                            14                              39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(22Q13.32) MUTATED       19     35     33
  DEL PEAK 35(22Q13.32) WILD-TYPE     53     80     75
D61V2, multiclass
        clus
vv       DEL PEAK 35(22Q13.32) MUTATED DEL PEAK 35(22Q13.32) WILD-TYPE
  CLUS_1                            19                              53
  CLUS_2                            35                              80
  CLUS_3                            33                              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(22Q13.32) MUTATED       21     14     13
  DEL PEAK 35(22Q13.32) WILD-TYPE     38     27     51
D61V3, multiclass
        clus
vv       DEL PEAK 35(22Q13.32) MUTATED DEL PEAK 35(22Q13.32) WILD-TYPE
  CLUS_1                            21                              38
  CLUS_2                            14                              27
  CLUS_3                            13                              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(22Q13.32) MUTATED        7     15     12      7      7
  DEL PEAK 35(22Q13.32) WILD-TYPE     25     32     33     16     10
D61V4, multiclass
        clus
vv       DEL PEAK 35(22Q13.32) MUTATED DEL PEAK 35(22Q13.32) WILD-TYPE
  CLUS_1                             7                              25
  CLUS_2                            15                              32
  CLUS_3                            12                              33
  CLUS_4                             7                              16
  CLUS_5                             7                              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(22Q13.32) MUTATED       12     27     22     26
  DEL PEAK 35(22Q13.32) WILD-TYPE     45     71     47     42
D61V5, multiclass
        clus
vv       DEL PEAK 35(22Q13.32) MUTATED DEL PEAK 35(22Q13.32) WILD-TYPE
  CLUS_1                            12                              45
  CLUS_2                            27                              71
  CLUS_3                            22                              47
  CLUS_4                            26                              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(22Q13.32) MUTATED       23     47     17
  DEL PEAK 35(22Q13.32) WILD-TYPE     49    138     18
D61V6, multiclass
        clus
vv       DEL PEAK 35(22Q13.32) MUTATED DEL PEAK 35(22Q13.32) WILD-TYPE
  CLUS_1                            23                              49
  CLUS_2                            47                             138
  CLUS_3                            17                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(22Q13.32) MUTATED       29     21     37
  DEL PEAK 35(22Q13.32) WILD-TYPE     76     54     78
D61V7, multiclass
        clus
vv       DEL PEAK 35(22Q13.32) MUTATED DEL PEAK 35(22Q13.32) WILD-TYPE
  CLUS_1                            29                              76
  CLUS_2                            21                              54
  CLUS_3                            37                              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(22Q13.32) MUTATED       21     25     18      9     14
  DEL PEAK 35(22Q13.32) WILD-TYPE     39     70     54     16     29
D61V8, multiclass
        clus
vv       DEL PEAK 35(22Q13.32) MUTATED DEL PEAK 35(22Q13.32) WILD-TYPE
  CLUS_1                            21                              39
  CLUS_2                            25                              70
  CLUS_3                            18                              54
  CLUS_4                             9                              16
  CLUS_5                            14                              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(22Q13.32) MUTATED       32     22     29
  DEL PEAK 35(22Q13.32) WILD-TYPE     69     57     73
D61V9, multiclass
        clus
vv       DEL PEAK 35(22Q13.32) MUTATED DEL PEAK 35(22Q13.32) WILD-TYPE
  CLUS_1                            32                              69
  CLUS_2                            22                              57
  CLUS_3                            29                              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(22Q13.32) MUTATED        7     23     28     13     12
  DEL PEAK 35(22Q13.32) WILD-TYPE     22     56     71     29     21
D61V10, multiclass
        clus
vv       DEL PEAK 35(22Q13.32) MUTATED DEL PEAK 35(22Q13.32) WILD-TYPE
  CLUS_1                             7                              22
  CLUS_2                            23                              56
  CLUS_3                            28                              71
  CLUS_4                            13                              29
  CLUS_5                            12                              21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 36(XP11.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(XP11.3) MUTATED        2     37      9     11     13
  DEL PEAK 36(XP11.3) WILD-TYPE     13     75     47     48     40
D62V1, multiclass
        clus
vv       DEL PEAK 36(XP11.3) MUTATED DEL PEAK 36(XP11.3) WILD-TYPE
  CLUS_1                           2                            13
  CLUS_2                          37                            75
  CLUS_3                           9                            47
  CLUS_4                          11                            48
  CLUS_5                          13                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(XP11.3) MUTATED       14     39     19
  DEL PEAK 36(XP11.3) WILD-TYPE     58     76     89
D62V2, multiclass
        clus
vv       DEL PEAK 36(XP11.3) MUTATED DEL PEAK 36(XP11.3) WILD-TYPE
  CLUS_1                          14                            58
  CLUS_2                          39                            76
  CLUS_3                          19                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(XP11.3) MUTATED       10     11     16
  DEL PEAK 36(XP11.3) WILD-TYPE     49     30     48
D62V3, multiclass
        clus
vv       DEL PEAK 36(XP11.3) MUTATED DEL PEAK 36(XP11.3) WILD-TYPE
  CLUS_1                          10                            49
  CLUS_2                          11                            30
  CLUS_3                          16                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(XP11.3) MUTATED        6     10     14      4      3
  DEL PEAK 36(XP11.3) WILD-TYPE     26     37     31     19     14
D62V4, multiclass
        clus
vv       DEL PEAK 36(XP11.3) MUTATED DEL PEAK 36(XP11.3) WILD-TYPE
  CLUS_1                           6                            26
  CLUS_2                          10                            37
  CLUS_3                          14                            31
  CLUS_4                           4                            19
  CLUS_5                           3                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(XP11.3) MUTATED       12     22     13     25
  DEL PEAK 36(XP11.3) WILD-TYPE     45     76     56     43
D62V5, multiclass
        clus
vv       DEL PEAK 36(XP11.3) MUTATED DEL PEAK 36(XP11.3) WILD-TYPE
  CLUS_1                          12                            45
  CLUS_2                          22                            76
  CLUS_3                          13                            56
  CLUS_4                          25                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(XP11.3) MUTATED       13     48     11
  DEL PEAK 36(XP11.3) WILD-TYPE     59    137     24
D62V6, multiclass
        clus
vv       DEL PEAK 36(XP11.3) MUTATED DEL PEAK 36(XP11.3) WILD-TYPE
  CLUS_1                          13                            59
  CLUS_2                          48                           137
  CLUS_3                          11                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(XP11.3) MUTATED       21      7     44
  DEL PEAK 36(XP11.3) WILD-TYPE     84     68     71
D62V7, multiclass
        clus
vv       DEL PEAK 36(XP11.3) MUTATED DEL PEAK 36(XP11.3) WILD-TYPE
  CLUS_1                          21                            84
  CLUS_2                           7                            68
  CLUS_3                          44                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(XP11.3) MUTATED       11     28     10      9     14
  DEL PEAK 36(XP11.3) WILD-TYPE     49     67     62     16     29
D62V8, multiclass
        clus
vv       DEL PEAK 36(XP11.3) MUTATED DEL PEAK 36(XP11.3) WILD-TYPE
  CLUS_1                          11                            49
  CLUS_2                          28                            67
  CLUS_3                          10                            62
  CLUS_4                           9                            16
  CLUS_5                          14                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(XP11.3) MUTATED       23     10     35
  DEL PEAK 36(XP11.3) WILD-TYPE     78     69     67
D62V9, multiclass
        clus
vv       DEL PEAK 36(XP11.3) MUTATED DEL PEAK 36(XP11.3) WILD-TYPE
  CLUS_1                          23                            78
  CLUS_2                          10                            69
  CLUS_3                          35                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(XP11.3) MUTATED        8     11     31     14      4
  DEL PEAK 36(XP11.3) WILD-TYPE     21     68     68     28     29
D62V10, multiclass
        clus
vv       DEL PEAK 36(XP11.3) MUTATED DEL PEAK 36(XP11.3) WILD-TYPE
  CLUS_1                           8                            21
  CLUS_2                          11                            68
  CLUS_3                          31                            68
  CLUS_4                          14                            28
  CLUS_5                           4                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 37(XQ21.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(XQ21.33) MUTATED        2     26      6     12     13
  DEL PEAK 37(XQ21.33) WILD-TYPE     13     86     50     47     40
D63V1, multiclass
        clus
vv       DEL PEAK 37(XQ21.33) MUTATED DEL PEAK 37(XQ21.33) WILD-TYPE
  CLUS_1                            2                             13
  CLUS_2                           26                             86
  CLUS_3                            6                             50
  CLUS_4                           12                             47
  CLUS_5                           13                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(XQ21.33) MUTATED       13     31     15
  DEL PEAK 37(XQ21.33) WILD-TYPE     59     84     93
D63V2, multiclass
        clus
vv       DEL PEAK 37(XQ21.33) MUTATED DEL PEAK 37(XQ21.33) WILD-TYPE
  CLUS_1                           13                             59
  CLUS_2                           31                             84
  CLUS_3                           15                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(XQ21.33) MUTATED        6     11     13
  DEL PEAK 37(XQ21.33) WILD-TYPE     53     30     51
D63V3, multiclass
        clus
vv       DEL PEAK 37(XQ21.33) MUTATED DEL PEAK 37(XQ21.33) WILD-TYPE
  CLUS_1                            6                             53
  CLUS_2                           11                             30
  CLUS_3                           13                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(XQ21.33) MUTATED        2      9     14      5      0
  DEL PEAK 37(XQ21.33) WILD-TYPE     30     38     31     18     17
D63V4, multiclass
        clus
vv       DEL PEAK 37(XQ21.33) MUTATED DEL PEAK 37(XQ21.33) WILD-TYPE
  CLUS_1                            2                             30
  CLUS_2                            9                             38
  CLUS_3                           14                             31
  CLUS_4                            5                             18
  CLUS_5                            0                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(XQ21.33) MUTATED       10     19     14     16
  DEL PEAK 37(XQ21.33) WILD-TYPE     47     79     55     52
D63V5, multiclass
        clus
vv       DEL PEAK 37(XQ21.33) MUTATED DEL PEAK 37(XQ21.33) WILD-TYPE
  CLUS_1                           10                             47
  CLUS_2                           19                             79
  CLUS_3                           14                             55
  CLUS_4                           16                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(XQ21.33) MUTATED       13     40      6
  DEL PEAK 37(XQ21.33) WILD-TYPE     59    145     29
D63V6, multiclass
        clus
vv       DEL PEAK 37(XQ21.33) MUTATED DEL PEAK 37(XQ21.33) WILD-TYPE
  CLUS_1                           13                             59
  CLUS_2                           40                            145
  CLUS_3                            6                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(XQ21.33) MUTATED       18     12     29
  DEL PEAK 37(XQ21.33) WILD-TYPE     87     63     86
D63V7, multiclass
        clus
vv       DEL PEAK 37(XQ21.33) MUTATED DEL PEAK 37(XQ21.33) WILD-TYPE
  CLUS_1                           18                             87
  CLUS_2                           12                             63
  CLUS_3                           29                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(XQ21.33) MUTATED       13     20     13      4      9
  DEL PEAK 37(XQ21.33) WILD-TYPE     47     75     59     21     34
D63V8, multiclass
        clus
vv       DEL PEAK 37(XQ21.33) MUTATED DEL PEAK 37(XQ21.33) WILD-TYPE
  CLUS_1                           13                             47
  CLUS_2                           20                             75
  CLUS_3                           13                             59
  CLUS_4                            4                             21
  CLUS_5                            9                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(XQ21.33) MUTATED       21     13     24
  DEL PEAK 37(XQ21.33) WILD-TYPE     80     66     78
D63V9, multiclass
        clus
vv       DEL PEAK 37(XQ21.33) MUTATED DEL PEAK 37(XQ21.33) WILD-TYPE
  CLUS_1                           21                             80
  CLUS_2                           13                             66
  CLUS_3                           24                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(XQ21.33) MUTATED        6     13     22     11      6
  DEL PEAK 37(XQ21.33) WILD-TYPE     23     66     77     31     27
D63V10, multiclass
        clus
vv       DEL PEAK 37(XQ21.33) MUTATED DEL PEAK 37(XQ21.33) WILD-TYPE
  CLUS_1                            6                             23
  CLUS_2                           13                             66
  CLUS_3                           22                             77
  CLUS_4                           11                             31
  CLUS_5                            6                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
