[1] "ofn"        "-oTCHOL-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/CHOL-TP/22541054/CHOL-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/CHOL-TP/22519028/transformed.cor.cli.txt"

nPatients in clinical file=36, in cluster file=36, common to both=36
[1] "Reduce the number of clustering variables from 82 to 65."
[1] 65 36
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               10                26 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               10                26 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               22                14 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               22                14 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                5                31 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                5                31 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                6                30 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                6                30 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                7                29 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                7                29 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               12                24 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               12                24 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               11                25 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               11                25 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                8                28 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                8                28 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                3                33 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                3                33 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
                7                29 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
                7                29 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
                6                30 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
                6                30 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
                5                31 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
                5                31 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               11                25 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               11                25 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 5                 31 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 5                 31 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 4                 32 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 4                 32 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 4                 32 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 4                 32 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 9                 27 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 9                 27 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 8                 28 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 8                 28 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 3                 33 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 3                 33 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 6                 30 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 6                 30 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 7                 29 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 7                 29 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 5                 31 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 5                 31 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 3                 33 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 3                 33 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 7                 29 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 7                 29 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 7                 29 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 7                 29 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 6                 30 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 6                 30 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 6                 30 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 6                 30 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 6                 30 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 6                 30 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                11                 25 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                11                 25 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                12                 24 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                12                 24 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 5                 31 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 5                 31 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                3                33 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                3                33 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               24                12 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               24                12 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                4                32 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                4                32 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               11                25 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               11                25 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               13                23 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               13                23 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                3                33 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                3                33 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                5                31 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                5                31 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               20                16 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               20                16 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                4                32 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                4                32 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                4                32 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                4                32 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               10                26 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               10                26 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                5                31 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                5                31 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               18                18 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               18                18 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               19                17 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               19                17 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                 6                 30 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                 6                 30 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                 5                 31 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                 5                 31 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 8                 28 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 8                 28 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                 9                 27 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                 9                 27 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 3                 33 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 3                 33 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                16                 20 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                16                 20 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                13                 23 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                13                 23 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 5                 31 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 5                 31 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 4                 32 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 4                 32 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 7                 29 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 7                 29 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                10                 26 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                10                 26 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 6                 30 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 6                 30 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                 8                 28 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                 8                 28 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 4                 32 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 4                 32 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 3                 33 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 3                 33 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 5                 31 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 5                 31 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                15                 21 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                15                 21 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 5                 31 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 5                 31 
[1] "XP LOSS MUTATION ANALYSIS"
[1] 3
  XP LOSS MUTATED XP LOSS WILD-TYPE 
               15                21 
  XP LOSS MUTATED XP LOSS WILD-TYPE 
               15                21 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               15                21 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               15                21 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 36 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 36 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=6, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        2      1      4      3
  1P GAIN WILD-TYPE     12      8      3      3
D1V1, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               2                12
  CLUS_2               1                 8
  CLUS_3               4                 3
  CLUS_4               3                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        3      3      4
  1P GAIN WILD-TYPE     11      7      8
D1V2, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               3                11
  CLUS_2               3                 7
  CLUS_3               4                 8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        2      1      4
  1P GAIN WILD-TYPE      8      7      8
D1V3, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               1                 7
  CLUS_3               4                 8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        1      1      3      2
  1P GAIN WILD-TYPE      5      6      5      7
D1V4, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               1                 6
  CLUS_3               3                 5
  CLUS_4               2                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1P GAIN MUTATED        0      0      2      3      3      2
  1P GAIN WILD-TYPE      6      4      3      3      6      4
D1V5, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               0                 6
  CLUS_2               0                 4
  CLUS_3               2                 3
  CLUS_4               3                 3
  CLUS_5               3                 6
  CLUS_6               2                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1P GAIN MUTATED        0      1      3      3      1      2      0
  1P GAIN WILD-TYPE      4      4      2      6      5      3      2
D1V6, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               0                 4
  CLUS_2               1                 4
  CLUS_3               3                 2
  CLUS_4               3                 6
  CLUS_5               1                 5
  CLUS_6               2                 3
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        3      0      2      5
  1P GAIN WILD-TYPE      7      6      8      5
D1V7, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               0                 6
  CLUS_3               2                 8
  CLUS_4               5                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1P GAIN MUTATED        1      3      1      0      3      2
  1P GAIN WILD-TYPE      7      7      3      5      2      2
D1V8, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               3                 7
  CLUS_3               1                 3
  CLUS_4               0                 5
  CLUS_5               3                 2
  CLUS_6               2                 2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P GAIN MUTATED        2      1      1      3      3
  1P GAIN WILD-TYPE      6      5      6      4      5
D1V9, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               2                 6
  CLUS_2               1                 5
  CLUS_3               1                 6
  CLUS_4               3                 4
  CLUS_5               3                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P GAIN MUTATED        1      2      3      4      0
  1P GAIN WILD-TYPE      5      6      6      3      6
D1V10, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               2                 6
  CLUS_3               3                 6
  CLUS_4               4                 3
  CLUS_5               0                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED        7      6      5      4
  1Q GAIN WILD-TYPE      7      3      2      2
D2V1, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               7                 7
  CLUS_2               6                 3
  CLUS_3               5                 2
  CLUS_4               4                 2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        8      4     10
  1Q GAIN WILD-TYPE      6      6      2
D2V2, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               8                 6
  CLUS_2               4                 6
  CLUS_3              10                 2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        7      4      7
  1Q GAIN WILD-TYPE      3      4      5
D2V3, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               7                 3
  CLUS_2               4                 4
  CLUS_3               7                 5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED        3      4      6      5
  1Q GAIN WILD-TYPE      3      3      2      4
D2V4, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               3                 3
  CLUS_2               4                 3
  CLUS_3               6                 2
  CLUS_4               5                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1Q GAIN MUTATED        2      2      3      4      5      6
  1Q GAIN WILD-TYPE      4      2      2      2      4      0
D2V5, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               2                 4
  CLUS_2               2                 2
  CLUS_3               3                 2
  CLUS_4               4                 2
  CLUS_5               5                 4
  CLUS_6               6                 0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1Q GAIN MUTATED        1      3      4      5      3      5      1
  1Q GAIN WILD-TYPE      3      2      1      4      3      0      1
D2V6, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               1                 3
  CLUS_2               3                 2
  CLUS_3               4                 1
  CLUS_4               5                 4
  CLUS_5               3                 3
  CLUS_6               5                 0
  CLUS_7               1                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED        6      1      8      7
  1Q GAIN WILD-TYPE      4      5      2      3
D2V7, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               6                 4
  CLUS_2               1                 5
  CLUS_3               8                 2
  CLUS_4               7                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1Q GAIN MUTATED        3      8      3      1      4      3
  1Q GAIN WILD-TYPE      5      2      1      4      1      1
D2V8, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               8                 2
  CLUS_3               3                 1
  CLUS_4               1                 4
  CLUS_5               4                 1
  CLUS_6               3                 1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q GAIN MUTATED        5      2      3      7      5
  1Q GAIN WILD-TYPE      3      4      4      0      3
D2V9, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               5                 3
  CLUS_2               2                 4
  CLUS_3               3                 4
  CLUS_4               7                 0
  CLUS_5               5                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q GAIN MUTATED        2      5      7      6      2
  1Q GAIN WILD-TYPE      4      3      2      1      4
D2V10, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               2                 4
  CLUS_2               5                 3
  CLUS_3               7                 2
  CLUS_4               6                 1
  CLUS_5               2                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        1      1      0      3
  2P GAIN WILD-TYPE     13      8      7      3
D3V1, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               1                13
  CLUS_2               1                 8
  CLUS_3               0                 7
  CLUS_4               3                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        1      2      2
  2P GAIN WILD-TYPE     13      8     10
D3V2, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               1                13
  CLUS_2               2                 8
  CLUS_3               2                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        2      2      1
  2P GAIN WILD-TYPE      8      6     11
D3V3, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               2                 6
  CLUS_3               1                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        1      1      3      0
  2P GAIN WILD-TYPE      5      6      5      9
D3V4, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               1                 6
  CLUS_3               3                 5
  CLUS_4               0                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2P GAIN MUTATED        1      0      1      2      1      0
  2P GAIN WILD-TYPE      5      4      4      4      8      6
D3V5, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               0                 4
  CLUS_3               1                 4
  CLUS_4               2                 4
  CLUS_5               1                 8
  CLUS_6               0                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2P GAIN MUTATED        1      0      1      1      2      0      0
  2P GAIN WILD-TYPE      3      5      4      8      4      5      2
D3V6, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               1                 3
  CLUS_2               0                 5
  CLUS_3               1                 4
  CLUS_4               1                 8
  CLUS_5               2                 4
  CLUS_6               0                 5
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        0      1      2      2
  2P GAIN WILD-TYPE     10      5      8      8
D3V7, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               0                10
  CLUS_2               1                 5
  CLUS_3               2                 8
  CLUS_4               2                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2P GAIN MUTATED        0      2      1      1      1      0
  2P GAIN WILD-TYPE      8      8      3      4      4      4
D3V8, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               2                 8
  CLUS_3               1                 3
  CLUS_4               1                 4
  CLUS_5               1                 4
  CLUS_6               0                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P GAIN MUTATED        0      0      3      1      1
  2P GAIN WILD-TYPE      8      6      4      6      7
D3V9, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               0                 6
  CLUS_3               3                 4
  CLUS_4               1                 6
  CLUS_5               1                 7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P GAIN MUTATED        0      2      1      1      1
  2P GAIN WILD-TYPE      6      6      8      6      5
D3V10, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               0                 6
  CLUS_2               2                 6
  CLUS_3               1                 8
  CLUS_4               1                 6
  CLUS_5               1                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        3      1      0      2
  2Q GAIN WILD-TYPE     11      8      7      4
D4V1, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               3                11
  CLUS_2               1                 8
  CLUS_3               0                 7
  CLUS_4               2                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        1      2      3
  2Q GAIN WILD-TYPE     13      8      9
D4V2, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               1                13
  CLUS_2               2                 8
  CLUS_3               3                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        3      1      2
  2Q GAIN WILD-TYPE      7      7     10
D4V3, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               1                 7
  CLUS_3               2                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        2      1      2      1
  2Q GAIN WILD-TYPE      4      6      6      8
D4V4, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               2                 4
  CLUS_2               1                 6
  CLUS_3               2                 6
  CLUS_4               1                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2Q GAIN MUTATED        1      0      0      2      1      2
  2Q GAIN WILD-TYPE      5      4      5      4      8      4
D4V5, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               0                 4
  CLUS_3               0                 5
  CLUS_4               2                 4
  CLUS_5               1                 8
  CLUS_6               2                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2Q GAIN MUTATED        1      0      0      1      2      2      0
  2Q GAIN WILD-TYPE      3      5      5      8      4      3      2
D4V6, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               1                 3
  CLUS_2               0                 5
  CLUS_3               0                 5
  CLUS_4               1                 8
  CLUS_5               2                 4
  CLUS_6               2                 3
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        0      1      3      2
  2Q GAIN WILD-TYPE     10      5      7      8
D4V7, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               0                10
  CLUS_2               1                 5
  CLUS_3               3                 7
  CLUS_4               2                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2Q GAIN MUTATED        0      2      1      1      2      0
  2Q GAIN WILD-TYPE      8      8      3      4      3      4
D4V8, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               2                 8
  CLUS_3               1                 3
  CLUS_4               1                 4
  CLUS_5               2                 3
  CLUS_6               0                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q GAIN MUTATED        0      0      2      3      1
  2Q GAIN WILD-TYPE      8      6      5      4      7
D4V9, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               0                 6
  CLUS_3               2                 5
  CLUS_4               3                 4
  CLUS_5               1                 7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q GAIN MUTATED        0      2      2      1      1
  2Q GAIN WILD-TYPE      6      6      7      6      5
D4V10, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               0                 6
  CLUS_2               2                 6
  CLUS_3               2                 7
  CLUS_4               1                 6
  CLUS_5               1                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = 3Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        4      2      1      0
  3Q GAIN WILD-TYPE     10      7      6      6
D5V1, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               4                10
  CLUS_2               2                 7
  CLUS_3               1                 6
  CLUS_4               0                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        6      0      1
  3Q GAIN WILD-TYPE      8     10     11
D5V2, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               6                 8
  CLUS_2               0                10
  CLUS_3               1                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        3      1      1
  3Q GAIN WILD-TYPE      7      7     11
D5V3, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               1                 7
  CLUS_3               1                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        2      1      2      0
  3Q GAIN WILD-TYPE      4      6      6      9
D5V4, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               2                 4
  CLUS_2               1                 6
  CLUS_3               2                 6
  CLUS_4               0                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3Q GAIN MUTATED        4      0      1      1      1      0
  3Q GAIN WILD-TYPE      2      4      4      5      8      6
D5V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               4                 2
  CLUS_2               0                 4
  CLUS_3               1                 4
  CLUS_4               1                 5
  CLUS_5               1                 8
  CLUS_6               0                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q GAIN MUTATED        3      1      2      1      0      0      0
  3Q GAIN WILD-TYPE      1      4      3      8      6      5      2
D5V6, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               3                 1
  CLUS_2               1                 4
  CLUS_3               2                 3
  CLUS_4               1                 8
  CLUS_5               0                 6
  CLUS_6               0                 5
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        3      1      3      0
  3Q GAIN WILD-TYPE      7      5      7     10
D5V7, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               1                 5
  CLUS_3               3                 7
  CLUS_4               0                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3Q GAIN MUTATED        3      3      0      1      0      0
  3Q GAIN WILD-TYPE      5      7      4      4      5      4
D5V8, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               3                 7
  CLUS_3               0                 4
  CLUS_4               1                 4
  CLUS_5               0                 5
  CLUS_6               0                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q GAIN MUTATED        2      0      3      2      0
  3Q GAIN WILD-TYPE      6      6      4      5      8
D5V9, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               2                 6
  CLUS_2               0                 6
  CLUS_3               3                 4
  CLUS_4               2                 5
  CLUS_5               0                 8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q GAIN MUTATED        2      2      2      0      1
  3Q GAIN WILD-TYPE      4      6      7      7      5
D5V10, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               2                 4
  CLUS_2               2                 6
  CLUS_3               2                 7
  CLUS_4               0                 7
  CLUS_5               1                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = 5P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED        5      2      3      2
  5P GAIN WILD-TYPE      9      7      4      4
D6V1, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               5                 9
  CLUS_2               2                 7
  CLUS_3               3                 4
  CLUS_4               2                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        5      3      4
  5P GAIN WILD-TYPE      9      7      8
D6V2, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               5                 9
  CLUS_2               3                 7
  CLUS_3               4                 8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        3      3      3
  5P GAIN WILD-TYPE      7      5      9
D6V3, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               3                 5
  CLUS_3               3                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED        0      3      4      2
  5P GAIN WILD-TYPE      6      4      4      7
D6V4, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               0                 6
  CLUS_2               3                 4
  CLUS_3               4                 4
  CLUS_4               2                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5P GAIN MUTATED        2      1      1      3      4      1
  5P GAIN WILD-TYPE      4      3      4      3      5      5
D6V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               2                 4
  CLUS_2               1                 3
  CLUS_3               1                 4
  CLUS_4               3                 3
  CLUS_5               4                 5
  CLUS_6               1                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P GAIN MUTATED        1      2      2      4      2      1      0
  5P GAIN WILD-TYPE      3      3      3      5      4      4      2
D6V6, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               1                 3
  CLUS_2               2                 3
  CLUS_3               2                 3
  CLUS_4               4                 5
  CLUS_5               2                 4
  CLUS_6               1                 4
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED        3      3      3      3
  5P GAIN WILD-TYPE      7      3      7      7
D6V7, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               3                 3
  CLUS_3               3                 7
  CLUS_4               3                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5P GAIN MUTATED        3      3      1      2      2      1
  5P GAIN WILD-TYPE      5      7      3      3      3      3
D6V8, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               3                 7
  CLUS_3               1                 3
  CLUS_4               2                 3
  CLUS_5               2                 3
  CLUS_6               1                 3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P GAIN MUTATED        2      1      4      3      2
  5P GAIN WILD-TYPE      6      5      3      4      6
D6V9, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               2                 6
  CLUS_2               1                 5
  CLUS_3               4                 3
  CLUS_4               3                 4
  CLUS_5               2                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P GAIN MUTATED        3      3      2      2      2
  5P GAIN WILD-TYPE      3      5      7      5      4
D6V10, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               3                 3
  CLUS_2               3                 5
  CLUS_3               2                 7
  CLUS_4               2                 5
  CLUS_5               2                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = 5Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        4      2      3      2
  5Q GAIN WILD-TYPE     10      7      4      4
D7V1, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               4                10
  CLUS_2               2                 7
  CLUS_3               3                 4
  CLUS_4               2                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        4      3      4
  5Q GAIN WILD-TYPE     10      7      8
D7V2, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               4                10
  CLUS_2               3                 7
  CLUS_3               4                 8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        2      3      3
  5Q GAIN WILD-TYPE      8      5      9
D7V3, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               3                 5
  CLUS_3               3                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        0      3      3      2
  5Q GAIN WILD-TYPE      6      4      5      7
D7V4, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               0                 6
  CLUS_2               3                 4
  CLUS_3               3                 5
  CLUS_4               2                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5Q GAIN MUTATED        1      1      1      3      4      1
  5Q GAIN WILD-TYPE      5      3      4      3      5      5
D7V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               1                 3
  CLUS_3               1                 4
  CLUS_4               3                 3
  CLUS_5               4                 5
  CLUS_6               1                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q GAIN MUTATED        1      2      1      4      2      1      0
  5Q GAIN WILD-TYPE      3      3      4      5      4      4      2
D7V6, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1                 3
  CLUS_2               2                 3
  CLUS_3               1                 4
  CLUS_4               4                 5
  CLUS_5               2                 4
  CLUS_6               1                 4
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        3      3      2      3
  5Q GAIN WILD-TYPE      7      3      8      7
D7V7, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               3                 3
  CLUS_3               2                 8
  CLUS_4               3                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5Q GAIN MUTATED        3      2      1      2      2      1
  5Q GAIN WILD-TYPE      5      8      3      3      3      3
D7V8, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               2                 8
  CLUS_3               1                 3
  CLUS_4               2                 3
  CLUS_5               2                 3
  CLUS_6               1                 3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q GAIN MUTATED        2      1      3      3      2
  5Q GAIN WILD-TYPE      6      5      4      4      6
D7V9, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               2                 6
  CLUS_2               1                 5
  CLUS_3               3                 4
  CLUS_4               3                 4
  CLUS_5               2                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q GAIN MUTATED        3      2      2      2      2
  5Q GAIN WILD-TYPE      3      6      7      5      4
D7V10, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               3                 3
  CLUS_2               2                 6
  CLUS_3               2                 7
  CLUS_4               2                 5
  CLUS_5               2                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = 6P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        3      2      2      1
  6P GAIN WILD-TYPE     11      7      5      5
D8V1, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               3                11
  CLUS_2               2                 7
  CLUS_3               2                 5
  CLUS_4               1                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        4      1      3
  6P GAIN WILD-TYPE     10      9      9
D8V2, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               4                10
  CLUS_2               1                 9
  CLUS_3               3                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        3      1      3
  6P GAIN WILD-TYPE      7      7      9
D8V3, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               1                 7
  CLUS_3               3                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        1      1      3      2
  6P GAIN WILD-TYPE      5      6      5      7
D8V4, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               1                 6
  CLUS_3               3                 5
  CLUS_4               2                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6P GAIN MUTATED        2      0      0      2      3      1
  6P GAIN WILD-TYPE      4      4      5      4      6      5
D8V5, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               2                 4
  CLUS_2               0                 4
  CLUS_3               0                 5
  CLUS_4               2                 4
  CLUS_5               3                 6
  CLUS_6               1                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6P GAIN MUTATED        1      0      2      3      1      1      0
  6P GAIN WILD-TYPE      3      5      3      6      5      4      2
D8V6, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               1                 3
  CLUS_2               0                 5
  CLUS_3               2                 3
  CLUS_4               3                 6
  CLUS_5               1                 5
  CLUS_6               1                 4
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        0      1      5      2
  6P GAIN WILD-TYPE     10      5      5      8
D8V7, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               0                10
  CLUS_2               1                 5
  CLUS_3               5                 5
  CLUS_4               2                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6P GAIN MUTATED        0      5      0      1      1      1
  6P GAIN WILD-TYPE      8      5      4      4      4      3
D8V8, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               5                 5
  CLUS_3               0                 4
  CLUS_4               1                 4
  CLUS_5               1                 4
  CLUS_6               1                 3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P GAIN MUTATED        0      0      4      3      1
  6P GAIN WILD-TYPE      8      6      3      4      7
D8V9, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               0                 6
  CLUS_3               4                 3
  CLUS_4               3                 4
  CLUS_5               1                 7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P GAIN MUTATED        0      4      2      1      1
  6P GAIN WILD-TYPE      6      4      7      6      5
D8V10, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               0                 6
  CLUS_2               4                 4
  CLUS_3               2                 7
  CLUS_4               1                 6
  CLUS_5               1                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = 6Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        1      2      0      0
  6Q GAIN WILD-TYPE     13      7      7      6
D9V1, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               1                13
  CLUS_2               2                 7
  CLUS_3               0                 7
  CLUS_4               0                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        3      0      0
  6Q GAIN WILD-TYPE     11     10     12
D9V2, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               3                11
  CLUS_2               0                10
  CLUS_3               0                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        2      1      0
  6Q GAIN WILD-TYPE      8      7     12
D9V3, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               1                 7
  CLUS_3               0                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        1      1      1      0
  6Q GAIN WILD-TYPE      5      6      7      9
D9V4, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               1                 6
  CLUS_3               1                 7
  CLUS_4               0                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6Q GAIN MUTATED        2      0      0      0      1      0
  6Q GAIN WILD-TYPE      4      4      5      6      8      6
D9V5, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               2                 4
  CLUS_2               0                 4
  CLUS_3               0                 5
  CLUS_4               0                 6
  CLUS_5               1                 8
  CLUS_6               0                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6Q GAIN MUTATED        1      0      1      1      0      0      0
  6Q GAIN WILD-TYPE      3      5      4      8      6      5      2
D9V6, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               1                 3
  CLUS_2               0                 5
  CLUS_3               1                 4
  CLUS_4               1                 8
  CLUS_5               0                 6
  CLUS_6               0                 5
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        0      1      2      0
  6Q GAIN WILD-TYPE     10      5      8     10
D9V7, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               0                10
  CLUS_2               1                 5
  CLUS_3               2                 8
  CLUS_4               0                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6Q GAIN MUTATED        0      2      0      1      0      0
  6Q GAIN WILD-TYPE      8      8      4      4      5      4
D9V8, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               2                 8
  CLUS_3               0                 4
  CLUS_4               1                 4
  CLUS_5               0                 5
  CLUS_6               0                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q GAIN MUTATED        0      0      3      0      0
  6Q GAIN WILD-TYPE      8      6      4      7      8
D9V9, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               0                 6
  CLUS_3               3                 4
  CLUS_4               0                 7
  CLUS_5               0                 8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q GAIN MUTATED        0      2      0      0      1
  6Q GAIN WILD-TYPE      6      6      9      7      5
D9V10, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               0                 6
  CLUS_2               2                 6
  CLUS_3               0                 9
  CLUS_4               0                 7
  CLUS_5               1                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = 7P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED        2      1      2      2
  7P GAIN WILD-TYPE     12      8      5      4
D10V1, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               2                12
  CLUS_2               1                 8
  CLUS_3               2                 5
  CLUS_4               2                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        3      2      2
  7P GAIN WILD-TYPE     11      8     10
D10V2, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               3                11
  CLUS_2               2                 8
  CLUS_3               2                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        2      1      2
  7P GAIN WILD-TYPE      8      7     10
D10V3, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               1                 7
  CLUS_3               2                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED        1      0      3      1
  7P GAIN WILD-TYPE      5      7      5      8
D10V4, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               0                 7
  CLUS_3               3                 5
  CLUS_4               1                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7P GAIN MUTATED        3      0      1      1      2      0
  7P GAIN WILD-TYPE      3      4      4      5      7      6
D10V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               3                 3
  CLUS_2               0                 4
  CLUS_3               1                 4
  CLUS_4               1                 5
  CLUS_5               2                 7
  CLUS_6               0                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7P GAIN MUTATED        2      0      2      2      1      0      0
  7P GAIN WILD-TYPE      2      5      3      7      5      5      2
D10V6, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               2                 2
  CLUS_2               0                 5
  CLUS_3               2                 3
  CLUS_4               2                 7
  CLUS_5               1                 5
  CLUS_6               0                 5
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED        1      1      4      1
  7P GAIN WILD-TYPE      9      5      6      9
D10V7, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               1                 5
  CLUS_3               4                 6
  CLUS_4               1                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7P GAIN MUTATED        1      4      0      1      1      0
  7P GAIN WILD-TYPE      7      6      4      4      4      4
D10V8, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               4                 6
  CLUS_3               0                 4
  CLUS_4               1                 4
  CLUS_5               1                 4
  CLUS_6               0                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P GAIN MUTATED        1      1      4      1      0
  7P GAIN WILD-TYPE      7      5      3      6      8
D10V9, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                 5
  CLUS_3               4                 3
  CLUS_4               1                 6
  CLUS_5               0                 8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P GAIN MUTATED        1      4      1      0      1
  7P GAIN WILD-TYPE      5      4      8      7      5
D10V10, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               4                 4
  CLUS_3               1                 8
  CLUS_4               0                 7
  CLUS_5               1                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = 7Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED        2      1      2      1
  7Q GAIN WILD-TYPE     12      8      5      5
D11V1, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               2                12
  CLUS_2               1                 8
  CLUS_3               2                 5
  CLUS_4               1                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        3      2      1
  7Q GAIN WILD-TYPE     11      8     11
D11V2, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               3                11
  CLUS_2               2                 8
  CLUS_3               1                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        2      0      2
  7Q GAIN WILD-TYPE      8      8     10
D11V3, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               0                 8
  CLUS_3               2                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED        1      0      2      1
  7Q GAIN WILD-TYPE      5      7      6      8
D11V4, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               0                 7
  CLUS_3               2                 6
  CLUS_4               1                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7Q GAIN MUTATED        3      0      0      1      2      0
  7Q GAIN WILD-TYPE      3      4      5      5      7      6
D11V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               3                 3
  CLUS_2               0                 4
  CLUS_3               0                 5
  CLUS_4               1                 5
  CLUS_5               2                 7
  CLUS_6               0                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7Q GAIN MUTATED        2      0      1      2      1      0      0
  7Q GAIN WILD-TYPE      2      5      4      7      5      5      2
D11V6, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               2                 2
  CLUS_2               0                 5
  CLUS_3               1                 4
  CLUS_4               2                 7
  CLUS_5               1                 5
  CLUS_6               0                 5
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED        1      1      3      1
  7Q GAIN WILD-TYPE      9      5      7      9
D11V7, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               1                 5
  CLUS_3               3                 7
  CLUS_4               1                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7Q GAIN MUTATED        1      3      0      1      1      0
  7Q GAIN WILD-TYPE      7      7      4      4      4      4
D11V8, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               3                 7
  CLUS_3               0                 4
  CLUS_4               1                 4
  CLUS_5               1                 4
  CLUS_6               0                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q GAIN MUTATED        1      1      3      1      0
  7Q GAIN WILD-TYPE      7      5      4      6      8
D11V9, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                 5
  CLUS_3               3                 4
  CLUS_4               1                 6
  CLUS_5               0                 8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q GAIN MUTATED        1      4      0      0      1
  7Q GAIN WILD-TYPE      5      4      9      7      5
D11V10, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               4                 4
  CLUS_3               0                 9
  CLUS_4               0                 7
  CLUS_5               1                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = 8P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        2      1      2      0
  8P GAIN WILD-TYPE     12      8      5      6
D12V1, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               2                12
  CLUS_2               1                 8
  CLUS_3               2                 5
  CLUS_4               0                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        3      0      2
  8P GAIN WILD-TYPE     11     10     10
D12V2, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               3                11
  CLUS_2               0                10
  CLUS_3               2                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        2      0      2
  8P GAIN WILD-TYPE      8      8     10
D12V3, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               0                 8
  CLUS_3               2                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        1      0      2      1
  8P GAIN WILD-TYPE      5      7      6      8
D12V4, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               0                 7
  CLUS_3               2                 6
  CLUS_4               1                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8P GAIN MUTATED        2      0      1      1      0      1
  8P GAIN WILD-TYPE      4      4      4      5      9      5
D12V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               2                 4
  CLUS_2               0                 4
  CLUS_3               1                 4
  CLUS_4               1                 5
  CLUS_5               0                 9
  CLUS_6               1                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P GAIN MUTATED        1      1      2      0      0      1      0
  8P GAIN WILD-TYPE      3      4      3      9      6      4      2
D12V6, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               1                 3
  CLUS_2               1                 4
  CLUS_3               2                 3
  CLUS_4               0                 9
  CLUS_5               0                 6
  CLUS_6               1                 4
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        2      0      3      0
  8P GAIN WILD-TYPE      8      6      7     10
D12V7, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               0                 6
  CLUS_3               3                 7
  CLUS_4               0                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8P GAIN MUTATED        1      3      0      0      1      0
  8P GAIN WILD-TYPE      7      7      4      5      4      4
D12V8, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               3                 7
  CLUS_3               0                 4
  CLUS_4               0                 5
  CLUS_5               1                 4
  CLUS_6               0                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P GAIN MUTATED        1      0      2      2      0
  8P GAIN WILD-TYPE      7      6      5      5      8
D12V9, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               0                 6
  CLUS_3               2                 5
  CLUS_4               2                 5
  CLUS_5               0                 8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P GAIN MUTATED        1      2      2      0      0
  8P GAIN WILD-TYPE      5      6      7      7      6
D12V10, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               2                 6
  CLUS_3               2                 7
  CLUS_4               0                 7
  CLUS_5               0                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = 8Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED        3      3      3      2
  8Q GAIN WILD-TYPE     11      6      4      4
D13V1, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               3                11
  CLUS_2               3                 6
  CLUS_3               3                 4
  CLUS_4               2                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        5      1      5
  8Q GAIN WILD-TYPE      9      9      7
D13V2, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               5                 9
  CLUS_2               1                 9
  CLUS_3               5                 7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        3      1      5
  8Q GAIN WILD-TYPE      7      7      7
D13V3, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               1                 7
  CLUS_3               5                 7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED        2      1      4      2
  8Q GAIN WILD-TYPE      4      6      4      7
D13V4, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               2                 4
  CLUS_2               1                 6
  CLUS_3               4                 4
  CLUS_4               2                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8Q GAIN MUTATED        3      0      3      2      0      3
  8Q GAIN WILD-TYPE      3      4      2      4      9      3
D13V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               3                 3
  CLUS_2               0                 4
  CLUS_3               3                 2
  CLUS_4               2                 4
  CLUS_5               0                 9
  CLUS_6               3                 3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q GAIN MUTATED        2      2      3      0      2      2      0
  8Q GAIN WILD-TYPE      2      3      2      9      4      3      2
D13V6, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               2                 2
  CLUS_2               2                 3
  CLUS_3               3                 2
  CLUS_4               0                 9
  CLUS_5               2                 4
  CLUS_6               2                 3
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED        5      0      5      1
  8Q GAIN WILD-TYPE      5      6      5      9
D13V7, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               5                 5
  CLUS_2               0                 6
  CLUS_3               5                 5
  CLUS_4               1                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8Q GAIN MUTATED        3      6      0      0      2      0
  8Q GAIN WILD-TYPE      5      4      4      5      3      4
D13V8, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               6                 4
  CLUS_3               0                 4
  CLUS_4               0                 5
  CLUS_5               2                 3
  CLUS_6               0                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q GAIN MUTATED        4      0      2      5      0
  8Q GAIN WILD-TYPE      4      6      5      2      8
D13V9, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               4                 4
  CLUS_2               0                 6
  CLUS_3               2                 5
  CLUS_4               5                 2
  CLUS_5               0                 8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q GAIN MUTATED        2      4      5      0      0
  8Q GAIN WILD-TYPE      4      4      4      7      6
D13V10, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               2                 4
  CLUS_2               4                 4
  CLUS_3               5                 4
  CLUS_4               0                 7
  CLUS_5               0                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = 10P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        3      1      1      0
  10P GAIN WILD-TYPE     11      8      6      6
D14V1, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                1                  8
  CLUS_3                1                  6
  CLUS_4                0                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        2      0      3
  10P GAIN WILD-TYPE     12     10      9
D14V2, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                0                 10
  CLUS_3                3                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        2      0      3
  10P GAIN WILD-TYPE      8      8      9
D14V3, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                0                  8
  CLUS_3                3                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        1      0      0      4
  10P GAIN WILD-TYPE      5      7      8      5
D14V4, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                0                  7
  CLUS_3                0                  8
  CLUS_4                4                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10P GAIN MUTATED        1      0      0      0      1      3
  10P GAIN WILD-TYPE      5      4      5      6      8      3
D14V5, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                0                  4
  CLUS_3                0                  5
  CLUS_4                0                  6
  CLUS_5                1                  8
  CLUS_6                3                  3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P GAIN MUTATED        1      0      0      1      0      3      0
  10P GAIN WILD-TYPE      3      5      5      8      6      2      2
D14V6, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                  3
  CLUS_2                0                  5
  CLUS_3                0                  5
  CLUS_4                1                  8
  CLUS_5                0                  6
  CLUS_6                3                  2
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        2      0      2      1
  10P GAIN WILD-TYPE      8      6      8      9
D14V7, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                0                  6
  CLUS_3                2                  8
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10P GAIN MUTATED        1      2      0      0      1      1
  10P GAIN WILD-TYPE      7      8      4      5      4      3
D14V8, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                2                  8
  CLUS_3                0                  4
  CLUS_4                0                  5
  CLUS_5                1                  4
  CLUS_6                1                  3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P GAIN MUTATED        2      0      0      2      1
  10P GAIN WILD-TYPE      6      6      7      5      7
D14V9, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                0                  6
  CLUS_3                0                  7
  CLUS_4                2                  5
  CLUS_5                1                  7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P GAIN MUTATED        2      0      2      1      0
  10P GAIN WILD-TYPE      4      8      7      6      6
D14V10, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                0                  8
  CLUS_3                2                  7
  CLUS_4                1                  6
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = 11P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        2      1      0      1
  11P GAIN WILD-TYPE     12      8      7      5
D15V1, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                1                  8
  CLUS_3                0                  7
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        3      1      0
  11P GAIN WILD-TYPE     11      9     12
D15V2, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                1                  9
  CLUS_3                0                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        2      0      1
  11P GAIN WILD-TYPE      8      8     11
D15V3, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                0                  8
  CLUS_3                1                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        2      0      1      0
  11P GAIN WILD-TYPE      4      7      7      9
D15V4, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                0                  7
  CLUS_3                1                  7
  CLUS_4                0                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11P GAIN MUTATED        3      0      0      1      0      0
  11P GAIN WILD-TYPE      3      4      5      5      9      6
D15V5, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                3                  3
  CLUS_2                0                  4
  CLUS_3                0                  5
  CLUS_4                1                  5
  CLUS_5                0                  9
  CLUS_6                0                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P GAIN MUTATED        3      0      0      0      1      0      0
  11P GAIN WILD-TYPE      1      5      5      9      5      5      2
D15V6, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                3                  1
  CLUS_2                0                  5
  CLUS_3                0                  5
  CLUS_4                0                  9
  CLUS_5                1                  5
  CLUS_6                0                  5
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        2      0      1      1
  11P GAIN WILD-TYPE      8      6      9      9
D15V7, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                0                  6
  CLUS_3                1                  9
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11P GAIN MUTATED        2      1      0      0      1      0
  11P GAIN WILD-TYPE      6      9      4      5      4      4
D15V8, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                1                  9
  CLUS_3                0                  4
  CLUS_4                0                  5
  CLUS_5                1                  4
  CLUS_6                0                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P GAIN MUTATED        2      0      1      1      0
  11P GAIN WILD-TYPE      6      6      6      6      8
D15V9, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                0                  6
  CLUS_3                1                  6
  CLUS_4                1                  6
  CLUS_5                0                  8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P GAIN MUTATED        2      2      0      0      0
  11P GAIN WILD-TYPE      4      6      9      7      6
D15V10, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                2                  6
  CLUS_3                0                  9
  CLUS_4                0                  7
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = 11Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        2      1      0      1
  11Q GAIN WILD-TYPE     12      8      7      5
D16V1, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                1                  8
  CLUS_3                0                  7
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        3      1      0
  11Q GAIN WILD-TYPE     11      9     12
D16V2, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                1                  9
  CLUS_3                0                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        2      0      1
  11Q GAIN WILD-TYPE      8      8     11
D16V3, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                0                  8
  CLUS_3                1                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        2      0      1      0
  11Q GAIN WILD-TYPE      4      7      7      9
D16V4, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                0                  7
  CLUS_3                1                  7
  CLUS_4                0                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11Q GAIN MUTATED        3      0      0      1      0      0
  11Q GAIN WILD-TYPE      3      4      5      5      9      6
D16V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                  3
  CLUS_2                0                  4
  CLUS_3                0                  5
  CLUS_4                1                  5
  CLUS_5                0                  9
  CLUS_6                0                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q GAIN MUTATED        3      0      0      0      1      0      0
  11Q GAIN WILD-TYPE      1      5      5      9      5      5      2
D16V6, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                  1
  CLUS_2                0                  5
  CLUS_3                0                  5
  CLUS_4                0                  9
  CLUS_5                1                  5
  CLUS_6                0                  5
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        2      0      1      1
  11Q GAIN WILD-TYPE      8      6      9      9
D16V7, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                0                  6
  CLUS_3                1                  9
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11Q GAIN MUTATED        2      1      0      0      1      0
  11Q GAIN WILD-TYPE      6      9      4      5      4      4
D16V8, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                1                  9
  CLUS_3                0                  4
  CLUS_4                0                  5
  CLUS_5                1                  4
  CLUS_6                0                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q GAIN MUTATED        2      0      1      1      0
  11Q GAIN WILD-TYPE      6      6      6      6      8
D16V9, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                0                  6
  CLUS_3                1                  6
  CLUS_4                1                  6
  CLUS_5                0                  8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q GAIN MUTATED        2      2      0      0      0
  11Q GAIN WILD-TYPE      4      6      9      7      6
D16V10, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                2                  6
  CLUS_3                0                  9
  CLUS_4                0                  7
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = 12P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED        4      1      4      0
  12P GAIN WILD-TYPE     10      8      3      6
D17V1, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                4                 10
  CLUS_2                1                  8
  CLUS_3                4                  3
  CLUS_4                0                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        4      1      4
  12P GAIN WILD-TYPE     10      9      8
D17V2, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                4                 10
  CLUS_2                1                  9
  CLUS_3                4                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        5      0      2
  12P GAIN WILD-TYPE      5      8     10
D17V3, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                5                  5
  CLUS_2                0                  8
  CLUS_3                2                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED        3      0      2      2
  12P GAIN WILD-TYPE      3      7      6      7
D17V4, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                3                  3
  CLUS_2                0                  7
  CLUS_3                2                  6
  CLUS_4                2                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12P GAIN MUTATED        2      0      1      2      2      2
  12P GAIN WILD-TYPE      4      4      4      4      7      4
D17V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                0                  4
  CLUS_3                1                  4
  CLUS_4                2                  4
  CLUS_5                2                  7
  CLUS_6                2                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12P GAIN MUTATED        2      1      1      2      1      2      0
  12P GAIN WILD-TYPE      2      4      4      7      5      3      2
D17V6, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                2                  2
  CLUS_2                1                  4
  CLUS_3                1                  4
  CLUS_4                2                  7
  CLUS_5                1                  5
  CLUS_6                2                  3
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED        3      0      3      3
  12P GAIN WILD-TYPE      7      6      7      7
D17V7, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                0                  6
  CLUS_3                3                  7
  CLUS_4                3                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12P GAIN MUTATED        2      3      1      0      2      1
  12P GAIN WILD-TYPE      6      7      3      5      3      3
D17V8, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                3                  7
  CLUS_3                1                  3
  CLUS_4                0                  5
  CLUS_5                2                  3
  CLUS_6                1                  3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P GAIN MUTATED        2      1      2      2      2
  12P GAIN WILD-TYPE      6      5      5      5      6
D17V9, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                1                  5
  CLUS_3                2                  5
  CLUS_4                2                  5
  CLUS_5                2                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P GAIN MUTATED        2      2      2      3      0
  12P GAIN WILD-TYPE      4      6      7      4      6
D17V10, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                2                  6
  CLUS_3                2                  7
  CLUS_4                3                  4
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = 12Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        4      0      4      0
  12Q GAIN WILD-TYPE     10      9      3      6
D18V1, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                4                 10
  CLUS_2                0                  9
  CLUS_3                4                  3
  CLUS_4                0                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        3      1      4
  12Q GAIN WILD-TYPE     11      9      8
D18V2, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                1                  9
  CLUS_3                4                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        4      0      2
  12Q GAIN WILD-TYPE      6      8     10
D18V3, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                4                  6
  CLUS_2                0                  8
  CLUS_3                2                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        2      0      2      2
  12Q GAIN WILD-TYPE      4      7      6      7
D18V4, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                0                  7
  CLUS_3                2                  6
  CLUS_4                2                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12Q GAIN MUTATED        1      0      1      2      2      2
  12Q GAIN WILD-TYPE      5      4      4      4      7      4
D18V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                0                  4
  CLUS_3                1                  4
  CLUS_4                2                  4
  CLUS_5                2                  7
  CLUS_6                2                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12Q GAIN MUTATED        1      1      1      2      1      2      0
  12Q GAIN WILD-TYPE      3      4      4      7      5      3      2
D18V6, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                1                  3
  CLUS_2                1                  4
  CLUS_3                1                  4
  CLUS_4                2                  7
  CLUS_5                1                  5
  CLUS_6                2                  3
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        3      0      2      3
  12Q GAIN WILD-TYPE      7      6      8      7
D18V7, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                0                  6
  CLUS_3                2                  8
  CLUS_4                3                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12Q GAIN MUTATED        2      2      1      0      2      1
  12Q GAIN WILD-TYPE      6      8      3      5      3      3
D18V8, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                2                  8
  CLUS_3                1                  3
  CLUS_4                0                  5
  CLUS_5                2                  3
  CLUS_6                1                  3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q GAIN MUTATED        2      1      1      2      2
  12Q GAIN WILD-TYPE      6      5      6      5      6
D18V9, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                1                  5
  CLUS_3                1                  6
  CLUS_4                2                  5
  CLUS_5                2                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q GAIN MUTATED        2      1      2      3      0
  12Q GAIN WILD-TYPE      4      7      7      4      6
D18V10, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                1                  7
  CLUS_3                2                  7
  CLUS_4                3                  4
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = 13Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        2      1      0      0
  13Q GAIN WILD-TYPE     12      8      7      6
D19V1, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                1                  8
  CLUS_3                0                  7
  CLUS_4                0                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        3      0      0
  13Q GAIN WILD-TYPE     11     10     12
D19V2, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                0                 10
  CLUS_3                0                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        2      0      0
  13Q GAIN WILD-TYPE      8      8     12
D19V3, multiclass
[1] "Remove cluster labels:" "13Q GAIN MUTATED"      
clus
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 2                 28 
        TCGA-3X-AAV9         TCGA-3X-AAVA         TCGA-4G-AAZT 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-W5-AA2G         TCGA-W5-AA2H         TCGA-W5-AA2I 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-W5-AA2O         TCGA-W5-AA2Q         TCGA-W5-AA2R 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-W5-AA2U         TCGA-W5-AA2W         TCGA-W5-AA2Z 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-W5-AA30         TCGA-W5-AA31         TCGA-W5-AA33 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-W5-AA34         TCGA-W5-AA36         TCGA-W5-AA38 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-W5-AA39         TCGA-W6-AA0S         TCGA-WD-A7RX 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-YR-A95A         TCGA-ZD-A8I3         TCGA-ZH-A8Y1 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-ZH-A8Y2         TCGA-ZH-A8Y5         TCGA-ZH-A8Y6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-ZH-A8Y8 
"13Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        1      0      1      0
  13Q GAIN WILD-TYPE      5      7      7      9
D19V4, multiclass
[1] "Remove cluster labels:" "13Q GAIN MUTATED"      
clus
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 2                 28 
        TCGA-3X-AAV9         TCGA-3X-AAVA         TCGA-4G-AAZT 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-W5-AA2G         TCGA-W5-AA2H         TCGA-W5-AA2I 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-W5-AA2O         TCGA-W5-AA2Q         TCGA-W5-AA2R 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-W5-AA2U         TCGA-W5-AA2W         TCGA-W5-AA2Z 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-W5-AA30         TCGA-W5-AA31         TCGA-W5-AA33 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-W5-AA34         TCGA-W5-AA36         TCGA-W5-AA38 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-W5-AA39         TCGA-W6-AA0S         TCGA-WD-A7RX 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-YR-A95A         TCGA-ZD-A8I3         TCGA-ZH-A8Y1 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-ZH-A8Y2         TCGA-ZH-A8Y5         TCGA-ZH-A8Y6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-ZH-A8Y8 
"13Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  13Q GAIN MUTATED        3      0      0      0      0      0
  13Q GAIN WILD-TYPE      3      4      5      6      9      6
D19V5, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                3                  3
  CLUS_2                0                  4
  CLUS_3                0                  5
  CLUS_4                0                  6
  CLUS_5                0                  9
  CLUS_6                0                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  13Q GAIN MUTATED        2      0      1      0      0      0      0
  13Q GAIN WILD-TYPE      2      5      4      9      6      5      2
D19V6, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                2                  2
  CLUS_2                0                  5
  CLUS_3                1                  4
  CLUS_4                0                  9
  CLUS_5                0                  6
  CLUS_6                0                  5
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        1      0      2      0
  13Q GAIN WILD-TYPE      9      6      8     10
D19V7, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                0                  6
  CLUS_3                2                  8
  CLUS_4                0                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  13Q GAIN MUTATED        1      2      0      0      0      0
  13Q GAIN WILD-TYPE      7      8      4      5      5      4
D19V8, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                2                  8
  CLUS_3                0                  4
  CLUS_4                0                  5
  CLUS_5                0                  5
  CLUS_6                0                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q GAIN MUTATED        1      0      2      0      0
  13Q GAIN WILD-TYPE      7      6      5      7      8
D19V9, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                0                  6
  CLUS_3                2                  5
  CLUS_4                0                  7
  CLUS_5                0                  8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q GAIN MUTATED        1      2      0      0      0
  13Q GAIN WILD-TYPE      5      6      9      7      6
D19V10, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                2                  6
  CLUS_3                0                  9
  CLUS_4                0                  7
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = 15Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        1      2      1      2
  15Q GAIN WILD-TYPE     13      7      6      4
D20V1, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                1                 13
  CLUS_2                2                  7
  CLUS_3                1                  6
  CLUS_4                2                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        3      1      2
  15Q GAIN WILD-TYPE     11      9     10
D20V2, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                1                  9
  CLUS_3                2                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        2      1      2
  15Q GAIN WILD-TYPE      8      7     10
D20V3, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                1                  7
  CLUS_3                2                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        1      1      2      1
  15Q GAIN WILD-TYPE      5      6      6      8
D20V4, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                1                  6
  CLUS_3                2                  6
  CLUS_4                1                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  15Q GAIN MUTATED        2      1      0      1      2      0
  15Q GAIN WILD-TYPE      4      3      5      5      7      6
D20V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                1                  3
  CLUS_3                0                  5
  CLUS_4                1                  5
  CLUS_5                2                  7
  CLUS_6                0                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  15Q GAIN MUTATED        1      0      1      2      1      0      1
  15Q GAIN WILD-TYPE      3      5      4      7      5      5      1
D20V6, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                1                  3
  CLUS_2                0                  5
  CLUS_3                1                  4
  CLUS_4                2                  7
  CLUS_5                1                  5
  CLUS_6                0                  5
  CLUS_7                1                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        0      0      3      3
  15Q GAIN WILD-TYPE     10      6      7      7
D20V7, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                0                 10
  CLUS_2                0                  6
  CLUS_3                3                  7
  CLUS_4                3                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  15Q GAIN MUTATED        0      3      1      0      1      1
  15Q GAIN WILD-TYPE      8      7      3      5      4      3
D20V8, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                3                  7
  CLUS_3                1                  3
  CLUS_4                0                  5
  CLUS_5                1                  4
  CLUS_6                1                  3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q GAIN MUTATED        0      0      3      1      2
  15Q GAIN WILD-TYPE      8      6      4      6      6
D20V9, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                0                  6
  CLUS_3                3                  4
  CLUS_4                1                  6
  CLUS_5                2                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q GAIN MUTATED        0      4      0      2      0
  15Q GAIN WILD-TYPE      6      4      9      5      6
D20V10, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                0                  6
  CLUS_2                4                  4
  CLUS_3                0                  9
  CLUS_4                2                  5
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = 16P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        5      0      1      1
  16P GAIN WILD-TYPE      9      9      6      5
D21V1, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                5                  9
  CLUS_2                0                  9
  CLUS_3                1                  6
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        2      1      4
  16P GAIN WILD-TYPE     12      9      8
D21V2, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                1                  9
  CLUS_3                4                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        3      1      2
  16P GAIN WILD-TYPE      7      7     10
D21V3, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                1                  7
  CLUS_3                2                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        1      1      3      1
  16P GAIN WILD-TYPE      5      6      5      8
D21V4, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                1                  6
  CLUS_3                3                  5
  CLUS_4                1                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16P GAIN MUTATED        2      0      0      2      1      2
  16P GAIN WILD-TYPE      4      4      5      4      8      4
D21V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                0                  4
  CLUS_3                0                  5
  CLUS_4                2                  4
  CLUS_5                1                  8
  CLUS_6                2                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P GAIN MUTATED        1      0      2      1      1      2      0
  16P GAIN WILD-TYPE      3      5      3      8      5      3      2
D21V6, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                1                  3
  CLUS_2                0                  5
  CLUS_3                2                  3
  CLUS_4                1                  8
  CLUS_5                1                  5
  CLUS_6                2                  3
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        1      1      4      1
  16P GAIN WILD-TYPE      9      5      6      9
D21V7, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                1                  5
  CLUS_3                4                  6
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16P GAIN MUTATED        1      3      1      1      1      0
  16P GAIN WILD-TYPE      7      7      3      4      4      4
D21V8, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                3                  7
  CLUS_3                1                  3
  CLUS_4                1                  4
  CLUS_5                1                  4
  CLUS_6                0                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P GAIN MUTATED        1      0      2      3      1
  16P GAIN WILD-TYPE      7      6      5      4      7
D21V9, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                0                  6
  CLUS_3                2                  5
  CLUS_4                3                  4
  CLUS_5                1                  7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P GAIN MUTATED        1      1      3      1      1
  16P GAIN WILD-TYPE      5      7      6      6      5
D21V10, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                1                  7
  CLUS_3                3                  6
  CLUS_4                1                  6
  CLUS_5                1                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = 16Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        3      0      1      1
  16Q GAIN WILD-TYPE     11      9      6      5
D22V1, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                0                  9
  CLUS_3                1                  6
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        2      1      2
  16Q GAIN WILD-TYPE     12      9     10
D22V2, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                1                  9
  CLUS_3                2                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        2      1      1
  16Q GAIN WILD-TYPE      8      7     11
D22V3, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                1                  7
  CLUS_3                1                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        0      1      3      0
  16Q GAIN WILD-TYPE      6      6      5      9
D22V4, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                0                  6
  CLUS_2                1                  6
  CLUS_3                3                  5
  CLUS_4                0                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16Q GAIN MUTATED        2      0      0      2      1      0
  16Q GAIN WILD-TYPE      4      4      5      4      8      6
D22V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                0                  4
  CLUS_3                0                  5
  CLUS_4                2                  4
  CLUS_5                1                  8
  CLUS_6                0                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q GAIN MUTATED        1      0      2      1      1      0      0
  16Q GAIN WILD-TYPE      3      5      3      8      5      5      2
D22V6, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                  3
  CLUS_2                0                  5
  CLUS_3                2                  3
  CLUS_4                1                  8
  CLUS_5                1                  5
  CLUS_6                0                  5
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        1      1      2      1
  16Q GAIN WILD-TYPE      9      5      8      9
D22V7, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                1                  5
  CLUS_3                2                  8
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16Q GAIN MUTATED        1      2      1      1      0      0
  16Q GAIN WILD-TYPE      7      8      3      4      5      4
D22V8, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                2                  8
  CLUS_3                1                  3
  CLUS_4                1                  4
  CLUS_5                0                  5
  CLUS_6                0                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q GAIN MUTATED        1      0      2      1      1
  16Q GAIN WILD-TYPE      7      6      5      6      7
D22V9, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                0                  6
  CLUS_3                2                  5
  CLUS_4                1                  6
  CLUS_5                1                  7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q GAIN MUTATED        1      1      1      1      1
  16Q GAIN WILD-TYPE      5      7      8      6      5
D22V10, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                1                  7
  CLUS_3                1                  8
  CLUS_4                1                  6
  CLUS_5                1                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = 17P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        1      1      0      1
  17P GAIN WILD-TYPE     13      8      7      5
D23V1, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                 13
  CLUS_2                1                  8
  CLUS_3                0                  7
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        1      1      1
  17P GAIN WILD-TYPE     13      9     11
D23V2, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                 13
  CLUS_2                1                  9
  CLUS_3                1                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        2      0      1
  17P GAIN WILD-TYPE      8      8     11
D23V3, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                0                  8
  CLUS_3                1                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        1      0      2      0
  17P GAIN WILD-TYPE      5      7      6      9
D23V4, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                0                  7
  CLUS_3                2                  6
  CLUS_4                0                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17P GAIN MUTATED        1      0      0      2      0      0
  17P GAIN WILD-TYPE      5      4      5      4      9      6
D23V5, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                0                  4
  CLUS_3                0                  5
  CLUS_4                2                  4
  CLUS_5                0                  9
  CLUS_6                0                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17P GAIN MUTATED        1      0      0      0      2      0      0
  17P GAIN WILD-TYPE      3      5      5      9      4      5      2
D23V6, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                  3
  CLUS_2                0                  5
  CLUS_3                0                  5
  CLUS_4                0                  9
  CLUS_5                2                  4
  CLUS_6                0                  5
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        0      0      1      2
  17P GAIN WILD-TYPE     10      6      9      8
D23V7, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                 10
  CLUS_2                0                  6
  CLUS_3                1                  9
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17P GAIN MUTATED        0      1      1      0      1      0
  17P GAIN WILD-TYPE      8      9      3      5      4      4
D23V8, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                1                  9
  CLUS_3                1                  3
  CLUS_4                0                  5
  CLUS_5                1                  4
  CLUS_6                0                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P GAIN MUTATED        0      0      1      1      1
  17P GAIN WILD-TYPE      8      6      6      6      7
D23V9, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                0                  6
  CLUS_3                1                  6
  CLUS_4                1                  6
  CLUS_5                1                  7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P GAIN MUTATED        0      2      0      1      0
  17P GAIN WILD-TYPE      6      6      9      6      6
D23V10, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                  6
  CLUS_2                2                  6
  CLUS_3                0                  9
  CLUS_4                1                  6
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = 17Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        3      1      2      1
  17Q GAIN WILD-TYPE     11      8      5      5
D24V1, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                1                  8
  CLUS_3                2                  5
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        3      2      2
  17Q GAIN WILD-TYPE     11      8     10
D24V2, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                2                  8
  CLUS_3                2                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        4      0      2
  17Q GAIN WILD-TYPE      6      8     10
D24V3, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                4                  6
  CLUS_2                0                  8
  CLUS_3                2                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        2      0      2      2
  17Q GAIN WILD-TYPE      4      7      6      7
D24V4, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                0                  7
  CLUS_3                2                  6
  CLUS_4                2                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17Q GAIN MUTATED        2      0      0      2      3      0
  17Q GAIN WILD-TYPE      4      4      5      4      6      6
D24V5, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                0                  4
  CLUS_3                0                  5
  CLUS_4                2                  4
  CLUS_5                3                  6
  CLUS_6                0                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17Q GAIN MUTATED        2      0      0      3      2      0      0
  17Q GAIN WILD-TYPE      2      5      5      6      4      5      2
D24V6, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                2                  2
  CLUS_2                0                  5
  CLUS_3                0                  5
  CLUS_4                3                  6
  CLUS_5                2                  4
  CLUS_6                0                  5
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        1      1      2      3
  17Q GAIN WILD-TYPE      9      5      8      7
D24V7, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                1                  5
  CLUS_3                2                  8
  CLUS_4                3                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17Q GAIN MUTATED        1      2      1      1      1      1
  17Q GAIN WILD-TYPE      7      8      3      4      4      3
D24V8, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                2                  8
  CLUS_3                1                  3
  CLUS_4                1                  4
  CLUS_5                1                  4
  CLUS_6                1                  3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q GAIN MUTATED        1      1      2      1      2
  17Q GAIN WILD-TYPE      7      5      5      6      6
D24V9, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                1                  5
  CLUS_3                2                  5
  CLUS_4                1                  6
  CLUS_5                2                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q GAIN MUTATED        1      3      0      2      1
  17Q GAIN WILD-TYPE      5      5      9      5      5
D24V10, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                3                  5
  CLUS_3                0                  9
  CLUS_4                2                  5
  CLUS_5                1                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = 18P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        4      0      3      0
  18P GAIN WILD-TYPE     10      9      4      6
D25V1, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                4                 10
  CLUS_2                0                  9
  CLUS_3                3                  4
  CLUS_4                0                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        3      1      3
  18P GAIN WILD-TYPE     11      9      9
D25V2, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                1                  9
  CLUS_3                3                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        4      0      1
  18P GAIN WILD-TYPE      6      8     11
D25V3, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                4                  6
  CLUS_2                0                  8
  CLUS_3                1                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        1      0      3      1
  18P GAIN WILD-TYPE      5      7      5      8
D25V4, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                0                  7
  CLUS_3                3                  5
  CLUS_4                1                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18P GAIN MUTATED        2      0      0      2      1      2
  18P GAIN WILD-TYPE      4      4      5      4      8      4
D25V5, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                0                  4
  CLUS_3                0                  5
  CLUS_4                2                  4
  CLUS_5                1                  8
  CLUS_6                2                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P GAIN MUTATED        1      0      2      1      2      1      0
  18P GAIN WILD-TYPE      3      5      3      8      4      4      2
D25V6, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                  3
  CLUS_2                0                  5
  CLUS_3                2                  3
  CLUS_4                1                  8
  CLUS_5                2                  4
  CLUS_6                1                  4
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        1      0      3      3
  18P GAIN WILD-TYPE      9      6      7      7
D25V7, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                0                  6
  CLUS_3                3                  7
  CLUS_4                3                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18P GAIN MUTATED        1      3      1      0      1      1
  18P GAIN WILD-TYPE      7      7      3      5      4      3
D25V8, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                3                  7
  CLUS_3                1                  3
  CLUS_4                0                  5
  CLUS_5                1                  4
  CLUS_6                1                  3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P GAIN MUTATED        1      1      1      2      2
  18P GAIN WILD-TYPE      7      5      6      5      6
D25V9, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                1                  5
  CLUS_3                1                  6
  CLUS_4                2                  5
  CLUS_5                2                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P GAIN MUTATED        1      2      1      3      0
  18P GAIN WILD-TYPE      5      6      8      4      6
D25V10, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                2                  6
  CLUS_3                1                  8
  CLUS_4                3                  4
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = 18Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        2      1      3      0
  18Q GAIN WILD-TYPE     12      8      4      6
D26V1, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                1                  8
  CLUS_3                3                  4
  CLUS_4                0                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        1      1      4
  18Q GAIN WILD-TYPE     13      9      8
D26V2, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                1                 13
  CLUS_2                1                  9
  CLUS_3                4                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        3      0      2
  18Q GAIN WILD-TYPE      7      8     10
D26V3, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                0                  8
  CLUS_3                2                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        1      0      2      2
  18Q GAIN WILD-TYPE      5      7      6      7
D26V4, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                0                  7
  CLUS_3                2                  6
  CLUS_4                2                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18Q GAIN MUTATED        0      0      0      2      1      3
  18Q GAIN WILD-TYPE      6      4      5      4      8      3
D26V5, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                0                  6
  CLUS_2                0                  4
  CLUS_3                0                  5
  CLUS_4                2                  4
  CLUS_5                1                  8
  CLUS_6                3                  3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18Q GAIN MUTATED        0      0      1      1      2      2      0
  18Q GAIN WILD-TYPE      4      5      4      8      4      3      2
D26V6, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                0                  4
  CLUS_2                0                  5
  CLUS_3                1                  4
  CLUS_4                1                  8
  CLUS_5                2                  4
  CLUS_6                2                  3
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        0      0      3      3
  18Q GAIN WILD-TYPE     10      6      7      7
D26V7, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                0                 10
  CLUS_2                0                  6
  CLUS_3                3                  7
  CLUS_4                3                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18Q GAIN MUTATED        0      3      1      0      1      1
  18Q GAIN WILD-TYPE      8      7      3      5      4      3
D26V8, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                3                  7
  CLUS_3                1                  3
  CLUS_4                0                  5
  CLUS_5                1                  4
  CLUS_6                1                  3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q GAIN MUTATED        0      1      0      3      2
  18Q GAIN WILD-TYPE      8      5      7      4      6
D26V9, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                1                  5
  CLUS_3                0                  7
  CLUS_4                3                  4
  CLUS_5                2                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q GAIN MUTATED        0      1      2      3      0
  18Q GAIN WILD-TYPE      6      7      7      4      6
D26V10, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                0                  6
  CLUS_2                1                  7
  CLUS_3                2                  7
  CLUS_4                3                  4
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = 19P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED        3      1      1      1
  19P GAIN WILD-TYPE     11      8      6      5
D27V1, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                1                  8
  CLUS_3                1                  6
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        3      1      2
  19P GAIN WILD-TYPE     11      9     10
D27V2, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                1                  9
  CLUS_3                2                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        1      1      3
  19P GAIN WILD-TYPE      9      7      9
D27V3, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                1                  7
  CLUS_3                3                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED        0      1      2      2
  19P GAIN WILD-TYPE      6      6      6      7
D27V4, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                0                  6
  CLUS_2                1                  6
  CLUS_3                2                  6
  CLUS_4                2                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19P GAIN MUTATED        1      1      0      2      2      0
  19P GAIN WILD-TYPE      5      3      5      4      7      6
D27V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                1                  3
  CLUS_3                0                  5
  CLUS_4                2                  4
  CLUS_5                2                  7
  CLUS_6                0                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19P GAIN MUTATED        1      0      1      2      1      0      1
  19P GAIN WILD-TYPE      3      5      4      7      5      5      1
D27V6, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                1                  3
  CLUS_2                0                  5
  CLUS_3                1                  4
  CLUS_4                2                  7
  CLUS_5                1                  5
  CLUS_6                0                  5
  CLUS_7                1                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED        2      0      1      3
  19P GAIN WILD-TYPE      8      6      9      7
D27V7, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                0                  6
  CLUS_3                1                  9
  CLUS_4                3                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19P GAIN MUTATED        1      1      1      0      1      2
  19P GAIN WILD-TYPE      7      9      3      5      4      2
D27V8, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                1                  9
  CLUS_3                1                  3
  CLUS_4                0                  5
  CLUS_5                1                  4
  CLUS_6                2                  2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P GAIN MUTATED        2      0      0      2      2
  19P GAIN WILD-TYPE      6      6      7      5      6
D27V9, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                0                  6
  CLUS_3                0                  7
  CLUS_4                2                  5
  CLUS_5                2                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P GAIN MUTATED        1      1      1      2      1
  19P GAIN WILD-TYPE      5      7      8      5      5
D27V10, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                1                  7
  CLUS_3                1                  8
  CLUS_4                2                  5
  CLUS_5                1                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = 19Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED        3      1      1      1
  19Q GAIN WILD-TYPE     11      8      6      5
D28V1, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                1                  8
  CLUS_3                1                  6
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        3      1      2
  19Q GAIN WILD-TYPE     11      9     10
D28V2, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                1                  9
  CLUS_3                2                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        1      1      3
  19Q GAIN WILD-TYPE      9      7      9
D28V3, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                1                  7
  CLUS_3                3                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED        0      1      2      2
  19Q GAIN WILD-TYPE      6      6      6      7
D28V4, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                0                  6
  CLUS_2                1                  6
  CLUS_3                2                  6
  CLUS_4                2                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19Q GAIN MUTATED        1      1      0      2      2      0
  19Q GAIN WILD-TYPE      5      3      5      4      7      6
D28V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                1                  3
  CLUS_3                0                  5
  CLUS_4                2                  4
  CLUS_5                2                  7
  CLUS_6                0                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q GAIN MUTATED        1      0      1      2      1      0      1
  19Q GAIN WILD-TYPE      3      5      4      7      5      5      1
D28V6, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                1                  3
  CLUS_2                0                  5
  CLUS_3                1                  4
  CLUS_4                2                  7
  CLUS_5                1                  5
  CLUS_6                0                  5
  CLUS_7                1                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED        2      0      1      3
  19Q GAIN WILD-TYPE      8      6      9      7
D28V7, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                0                  6
  CLUS_3                1                  9
  CLUS_4                3                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19Q GAIN MUTATED        1      1      1      0      1      2
  19Q GAIN WILD-TYPE      7      9      3      5      4      2
D28V8, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                1                  9
  CLUS_3                1                  3
  CLUS_4                0                  5
  CLUS_5                1                  4
  CLUS_6                2                  2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q GAIN MUTATED        2      0      0      2      2
  19Q GAIN WILD-TYPE      6      6      7      5      6
D28V9, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                0                  6
  CLUS_3                0                  7
  CLUS_4                2                  5
  CLUS_5                2                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q GAIN MUTATED        1      1      1      2      1
  19Q GAIN WILD-TYPE      5      7      8      5      5
D28V10, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                1                  7
  CLUS_3                1                  8
  CLUS_4                2                  5
  CLUS_5                1                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = 20P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED        4      2      2      3
  20P GAIN WILD-TYPE     10      7      5      3
D29V1, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                4                 10
  CLUS_2                2                  7
  CLUS_3                2                  5
  CLUS_4                3                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        4      2      5
  20P GAIN WILD-TYPE     10      8      7
D29V2, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                4                 10
  CLUS_2                2                  8
  CLUS_3                5                  7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        5      1      5
  20P GAIN WILD-TYPE      5      7      7
D29V3, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                5                  5
  CLUS_2                1                  7
  CLUS_3                5                  7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED        3      1      4      3
  20P GAIN WILD-TYPE      3      6      4      6
D29V4, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                3                  3
  CLUS_2                1                  6
  CLUS_3                4                  4
  CLUS_4                3                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20P GAIN MUTATED        2      0      1      3      2      3
  20P GAIN WILD-TYPE      4      4      4      3      7      3
D29V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                0                  4
  CLUS_3                1                  4
  CLUS_4                3                  3
  CLUS_5                2                  7
  CLUS_6                3                  3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P GAIN MUTATED        2      0      2      2      2      3      0
  20P GAIN WILD-TYPE      2      5      3      7      4      2      2
D29V6, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                2                  2
  CLUS_2                0                  5
  CLUS_3                2                  3
  CLUS_4                2                  7
  CLUS_5                2                  4
  CLUS_6                3                  2
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED        2      0      4      5
  20P GAIN WILD-TYPE      8      6      6      5
D29V7, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                0                  6
  CLUS_3                4                  6
  CLUS_4                5                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20P GAIN MUTATED        1      5      1      0      2      2
  20P GAIN WILD-TYPE      7      5      3      5      3      2
D29V8, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                5                  5
  CLUS_3                1                  3
  CLUS_4                0                  5
  CLUS_5                2                  3
  CLUS_6                2                  2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P GAIN MUTATED        2      1      1      4      3
  20P GAIN WILD-TYPE      6      5      6      3      5
D29V9, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                1                  5
  CLUS_3                1                  6
  CLUS_4                4                  3
  CLUS_5                3                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P GAIN MUTATED        1      2      4      4      0
  20P GAIN WILD-TYPE      5      6      5      3      6
D29V10, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                2                  6
  CLUS_3                4                  5
  CLUS_4                4                  3
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = 20Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED        5      2      2      3
  20Q GAIN WILD-TYPE      9      7      5      3
D30V1, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                5                  9
  CLUS_2                2                  7
  CLUS_3                2                  5
  CLUS_4                3                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        5      2      5
  20Q GAIN WILD-TYPE      9      8      7
D30V2, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                5                  9
  CLUS_2                2                  8
  CLUS_3                5                  7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        6      1      5
  20Q GAIN WILD-TYPE      4      7      7
D30V3, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                6                  4
  CLUS_2                1                  7
  CLUS_3                5                  7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED        3      1      5      3
  20Q GAIN WILD-TYPE      3      6      3      6
D30V4, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                3                  3
  CLUS_2                1                  6
  CLUS_3                5                  3
  CLUS_4                3                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20Q GAIN MUTATED        3      0      1      3      2      3
  20Q GAIN WILD-TYPE      3      4      4      3      7      3
D30V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                3                  3
  CLUS_2                0                  4
  CLUS_3                1                  4
  CLUS_4                3                  3
  CLUS_5                2                  7
  CLUS_6                3                  3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q GAIN MUTATED        2      0      3      2      2      3      0
  20Q GAIN WILD-TYPE      2      5      2      7      4      2      2
D30V6, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                2                  2
  CLUS_2                0                  5
  CLUS_3                3                  2
  CLUS_4                2                  7
  CLUS_5                2                  4
  CLUS_6                3                  2
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED        2      0      5      5
  20Q GAIN WILD-TYPE      8      6      5      5
D30V7, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                0                  6
  CLUS_3                5                  5
  CLUS_4                5                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20Q GAIN MUTATED        1      6      1      0      2      2
  20Q GAIN WILD-TYPE      7      4      3      5      3      2
D30V8, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                6                  4
  CLUS_3                1                  3
  CLUS_4                0                  5
  CLUS_5                2                  3
  CLUS_6                2                  2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q GAIN MUTATED        2      1      2      4      3
  20Q GAIN WILD-TYPE      6      5      5      3      5
D30V9, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                1                  5
  CLUS_3                2                  5
  CLUS_4                4                  3
  CLUS_5                3                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q GAIN MUTATED        1      3      4      4      0
  20Q GAIN WILD-TYPE      5      5      5      3      6
D30V10, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                3                  5
  CLUS_3                4                  5
  CLUS_4                4                  3
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = 22Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        2      1      0      2
  22Q GAIN WILD-TYPE     12      8      7      4
D31V1, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                1                  8
  CLUS_3                0                  7
  CLUS_4                2                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        3      1      1
  22Q GAIN WILD-TYPE     11      9     11
D31V2, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                1                  9
  CLUS_3                1                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        2      1      1
  22Q GAIN WILD-TYPE      8      7     11
D31V3, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                1                  7
  CLUS_3                1                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        1      1      1      1
  22Q GAIN WILD-TYPE      5      6      7      8
D31V4, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                1                  6
  CLUS_3                1                  7
  CLUS_4                1                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  22Q GAIN MUTATED        2      0      1      0      2      0
  22Q GAIN WILD-TYPE      4      4      4      6      7      6
D31V5, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                0                  4
  CLUS_3                1                  4
  CLUS_4                0                  6
  CLUS_5                2                  7
  CLUS_6                0                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q GAIN MUTATED        2      0      1      2      0      0      0
  22Q GAIN WILD-TYPE      2      5      4      7      6      5      2
D31V6, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                2                  2
  CLUS_2                0                  5
  CLUS_3                1                  4
  CLUS_4                2                  7
  CLUS_5                0                  6
  CLUS_6                0                  5
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        2      1      1      1
  22Q GAIN WILD-TYPE      8      5      9      9
D31V7, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                1                  5
  CLUS_3                1                  9
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  22Q GAIN MUTATED        1      2      0      1      0      1
  22Q GAIN WILD-TYPE      7      8      4      4      5      3
D31V8, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                2                  8
  CLUS_3                0                  4
  CLUS_4                1                  4
  CLUS_5                0                  5
  CLUS_6                1                  3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q GAIN MUTATED        2      0      2      0      1
  22Q GAIN WILD-TYPE      6      6      5      7      7
D31V9, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                0                  6
  CLUS_3                2                  5
  CLUS_4                0                  7
  CLUS_5                1                  7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q GAIN MUTATED        1      1      1      1      1
  22Q GAIN WILD-TYPE      5      7      8      6      5
D31V10, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                1                  7
  CLUS_3                1                  8
  CLUS_4                1                  6
  CLUS_5                1                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = 1P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        0      3      0      0
  1P LOSS WILD-TYPE     14      6      7      6
D32V1, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               0                14
  CLUS_2               3                 6
  CLUS_3               0                 7
  CLUS_4               0                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        1      1      1
  1P LOSS WILD-TYPE     13      9     11
D32V2, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               1                13
  CLUS_2               1                 9
  CLUS_3               1                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        1      0      2
  1P LOSS WILD-TYPE      9      8     10
D32V3, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               0                 8
  CLUS_3               2                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        1      0      0      2
  1P LOSS WILD-TYPE      5      7      8      7
D32V4, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               0                 7
  CLUS_3               0                 8
  CLUS_4               2                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1P LOSS MUTATED        1      1      0      0      0      1
  1P LOSS WILD-TYPE      5      3      5      6      9      5
D32V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               1                 3
  CLUS_3               0                 5
  CLUS_4               0                 6
  CLUS_5               0                 9
  CLUS_6               1                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1P LOSS MUTATED        1      1      0      0      0      1      0
  1P LOSS WILD-TYPE      3      4      5      9      6      4      2
D32V6, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               1                 3
  CLUS_2               1                 4
  CLUS_3               0                 5
  CLUS_4               0                 9
  CLUS_5               0                 6
  CLUS_6               1                 4
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        1      0      2      0
  1P LOSS WILD-TYPE      9      6      8     10
D32V7, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               0                 6
  CLUS_3               2                 8
  CLUS_4               0                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1P LOSS MUTATED        1      2      0      0      0      0
  1P LOSS WILD-TYPE      7      8      4      5      5      4
D32V8, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               2                 8
  CLUS_3               0                 4
  CLUS_4               0                 5
  CLUS_5               0                 5
  CLUS_6               0                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P LOSS MUTATED        0      1      1      1      0
  1P LOSS WILD-TYPE      8      5      6      6      8
D32V9, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               1                 5
  CLUS_3               1                 6
  CLUS_4               1                 6
  CLUS_5               0                 8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P LOSS MUTATED        1      1      1      0      0
  1P LOSS WILD-TYPE      5      7      8      7      6
D32V10, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               1                 7
  CLUS_3               1                 8
  CLUS_4               0                 7
  CLUS_5               0                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = 3P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        6      7      6      5
  3P LOSS WILD-TYPE      8      2      1      1
D33V1, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               6                 8
  CLUS_2               7                 2
  CLUS_3               6                 1
  CLUS_4               5                 1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        9      8      7
  3P LOSS WILD-TYPE      5      2      5
D33V2, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               9                 5
  CLUS_2               8                 2
  CLUS_3               7                 5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        8      5      8
  3P LOSS WILD-TYPE      2      3      4
D33V3, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               8                 2
  CLUS_2               5                 3
  CLUS_3               8                 4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        4      4      8      5
  3P LOSS WILD-TYPE      2      3      0      4
D33V4, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               4                 2
  CLUS_2               4                 3
  CLUS_3               8                 0
  CLUS_4               5                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3P LOSS MUTATED        3      3      4      6      5      3
  3P LOSS WILD-TYPE      3      1      1      0      4      3
D33V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               3                 3
  CLUS_2               3                 1
  CLUS_3               4                 1
  CLUS_4               6                 0
  CLUS_5               5                 4
  CLUS_6               3                 3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P LOSS MUTATED        2      4      5      5      6      2      0
  3P LOSS WILD-TYPE      2      1      0      4      0      3      2
D33V6, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               2                 2
  CLUS_2               4                 1
  CLUS_3               5                 0
  CLUS_4               5                 4
  CLUS_5               6                 0
  CLUS_6               2                 3
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        7      4      5      8
  3P LOSS WILD-TYPE      3      2      5      2
D33V7, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               7                 3
  CLUS_2               4                 2
  CLUS_3               5                 5
  CLUS_4               8                 2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3P LOSS MUTATED        5      6      3      4      4      2
  3P LOSS WILD-TYPE      3      4      1      1      1      2
D33V8, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               5                 3
  CLUS_2               6                 4
  CLUS_3               3                 1
  CLUS_4               4                 1
  CLUS_5               4                 1
  CLUS_6               2                 2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P LOSS MUTATED        5      5      5      4      5
  3P LOSS WILD-TYPE      3      1      2      3      3
D33V9, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               5                 3
  CLUS_2               5                 1
  CLUS_3               5                 2
  CLUS_4               4                 3
  CLUS_5               5                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P LOSS MUTATED        4      7      5      5      3
  3P LOSS WILD-TYPE      2      1      4      2      3
D33V10, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               4                 2
  CLUS_2               7                 1
  CLUS_3               5                 4
  CLUS_4               5                 2
  CLUS_5               3                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = 3Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        2      0      1      1
  3Q LOSS WILD-TYPE     12      9      6      5
D34V1, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               2                12
  CLUS_2               0                 9
  CLUS_3               1                 6
  CLUS_4               1                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        1      1      2
  3Q LOSS WILD-TYPE     13      9     10
D34V2, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               1                13
  CLUS_2               1                 9
  CLUS_3               2                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        2      0      1
  3Q LOSS WILD-TYPE      8      8     11
D34V3, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               0                 8
  CLUS_3               1                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        0      0      2      1
  3Q LOSS WILD-TYPE      6      7      6      8
D34V4, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                 6
  CLUS_2               0                 7
  CLUS_3               2                 6
  CLUS_4               1                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3Q LOSS MUTATED        0      0      0      2      1      1
  3Q LOSS WILD-TYPE      6      4      5      4      8      5
D34V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                 6
  CLUS_2               0                 4
  CLUS_3               0                 5
  CLUS_4               2                 4
  CLUS_5               1                 8
  CLUS_6               1                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q LOSS MUTATED        0      0      0      1      3      0      0
  3Q LOSS WILD-TYPE      4      5      5      8      3      5      2
D34V6, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                 4
  CLUS_2               0                 5
  CLUS_3               0                 5
  CLUS_4               1                 8
  CLUS_5               3                 3
  CLUS_6               0                 5
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        0      0      1      3
  3Q LOSS WILD-TYPE     10      6      9      7
D34V7, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                10
  CLUS_2               0                 6
  CLUS_3               1                 9
  CLUS_4               3                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3Q LOSS MUTATED        0      1      1      0      1      1
  3Q LOSS WILD-TYPE      8      9      3      5      4      3
D34V8, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               1                 9
  CLUS_3               1                 3
  CLUS_4               0                 5
  CLUS_5               1                 4
  CLUS_6               1                 3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q LOSS MUTATED        0      0      0      2      2
  3Q LOSS WILD-TYPE      8      6      7      5      6
D34V9, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               0                 6
  CLUS_3               0                 7
  CLUS_4               2                 5
  CLUS_5               2                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q LOSS MUTATED        0      2      0      2      0
  3Q LOSS WILD-TYPE      6      6      9      5      6
D34V10, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                 6
  CLUS_2               2                 6
  CLUS_3               0                 9
  CLUS_4               2                 5
  CLUS_5               0                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = 4P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED        4      3      2      2
  4P LOSS WILD-TYPE     10      6      5      4
D35V1, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               4                10
  CLUS_2               3                 6
  CLUS_3               2                 5
  CLUS_4               2                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        7      3      1
  4P LOSS WILD-TYPE      7      7     11
D35V2, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               7                 7
  CLUS_2               3                 7
  CLUS_3               1                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        3      3      3
  4P LOSS WILD-TYPE      7      5      9
D35V3, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               3                 5
  CLUS_3               3                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED        2      3      2      2
  4P LOSS WILD-TYPE      4      4      6      7
D35V4, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               2                 4
  CLUS_2               3                 4
  CLUS_3               2                 6
  CLUS_4               2                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4P LOSS MUTATED        2      0      2      2      5      0
  4P LOSS WILD-TYPE      4      4      3      4      4      6
D35V5, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               2                 4
  CLUS_2               0                 4
  CLUS_3               2                 3
  CLUS_4               2                 4
  CLUS_5               5                 4
  CLUS_6               0                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4P LOSS MUTATED        2      2      0      5      2      0      0
  4P LOSS WILD-TYPE      2      3      5      4      4      5      2
D35V6, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               2                 2
  CLUS_2               2                 3
  CLUS_3               0                 5
  CLUS_4               5                 4
  CLUS_5               2                 4
  CLUS_6               0                 5
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED        3      2      2      4
  4P LOSS WILD-TYPE      7      4      8      6
D35V7, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               2                 4
  CLUS_3               2                 8
  CLUS_4               4                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4P LOSS MUTATED        3      2      0      2      2      2
  4P LOSS WILD-TYPE      5      8      4      3      3      2
D35V8, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               2                 8
  CLUS_3               0                 4
  CLUS_4               2                 3
  CLUS_5               2                 3
  CLUS_6               2                 2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P LOSS MUTATED        2      1      4      2      2
  4P LOSS WILD-TYPE      6      5      3      5      6
D35V9, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               2                 6
  CLUS_2               1                 5
  CLUS_3               4                 3
  CLUS_4               2                 5
  CLUS_5               2                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P LOSS MUTATED        1      4      2      2      2
  4P LOSS WILD-TYPE      5      4      7      5      4
D35V10, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               4                 4
  CLUS_3               2                 7
  CLUS_4               2                 5
  CLUS_5               2                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = 4Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED        3      6      2      2
  4Q LOSS WILD-TYPE     11      3      5      4
D36V1, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               3                11
  CLUS_2               6                 3
  CLUS_3               2                 5
  CLUS_4               2                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        6      5      2
  4Q LOSS WILD-TYPE      8      5     10
D36V2, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               6                 8
  CLUS_2               5                 5
  CLUS_3               2                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        2      3      5
  4Q LOSS WILD-TYPE      8      5      7
D36V3, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               3                 5
  CLUS_3               5                 7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED        1      3      2      4
  4Q LOSS WILD-TYPE      5      4      6      5
D36V4, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               3                 4
  CLUS_3               2                 6
  CLUS_4               4                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4Q LOSS MUTATED        1      2      2      3      5      0
  4Q LOSS WILD-TYPE      5      2      3      3      4      6
D36V5, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               2                 2
  CLUS_3               2                 3
  CLUS_4               3                 3
  CLUS_5               5                 4
  CLUS_6               0                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4Q LOSS MUTATED        1      3      1      5      2      0      1
  4Q LOSS WILD-TYPE      3      2      4      4      4      5      1
D36V6, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               1                 3
  CLUS_2               3                 2
  CLUS_3               1                 4
  CLUS_4               5                 4
  CLUS_5               2                 4
  CLUS_6               0                 5
  CLUS_7               1                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED        3      2      2      6
  4Q LOSS WILD-TYPE      7      4      8      4
D36V7, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               2                 4
  CLUS_3               2                 8
  CLUS_4               6                 4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4Q LOSS MUTATED        3      2      2      2      2      2
  4Q LOSS WILD-TYPE      5      8      2      3      3      2
D36V8, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               2                 8
  CLUS_3               2                 2
  CLUS_4               2                 3
  CLUS_5               2                 3
  CLUS_6               2                 2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q LOSS MUTATED        1      2      4      2      4
  4Q LOSS WILD-TYPE      7      4      3      5      4
D36V9, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               2                 4
  CLUS_3               4                 3
  CLUS_4               2                 5
  CLUS_5               4                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q LOSS MUTATED        1      4      2      4      2
  4Q LOSS WILD-TYPE      5      4      7      3      4
D36V10, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               4                 4
  CLUS_3               2                 7
  CLUS_4               4                 3
  CLUS_5               2                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = 5Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        1      1      0      1
  5Q LOSS WILD-TYPE     13      8      7      5
D37V1, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               1                13
  CLUS_2               1                 8
  CLUS_3               0                 7
  CLUS_4               1                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        2      0      1
  5Q LOSS WILD-TYPE     12     10     11
D37V2, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               2                12
  CLUS_2               0                10
  CLUS_3               1                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        2      0      1
  5Q LOSS WILD-TYPE      8      8     11
D37V3, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               0                 8
  CLUS_3               1                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        1      0      2      0
  5Q LOSS WILD-TYPE      5      7      6      9
D37V4, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               0                 7
  CLUS_3               2                 6
  CLUS_4               0                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5Q LOSS MUTATED        2      0      1      0      0      0
  5Q LOSS WILD-TYPE      4      4      4      6      9      6
D37V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               2                 4
  CLUS_2               0                 4
  CLUS_3               1                 4
  CLUS_4               0                 6
  CLUS_5               0                 9
  CLUS_6               0                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q LOSS MUTATED        1      0      2      0      0      0      0
  5Q LOSS WILD-TYPE      3      5      3      9      6      5      2
D37V6, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               1                 3
  CLUS_2               0                 5
  CLUS_3               2                 3
  CLUS_4               0                 9
  CLUS_5               0                 6
  CLUS_6               0                 5
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        1      0      2      0
  5Q LOSS WILD-TYPE      9      6      8     10
D37V7, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               0                 6
  CLUS_3               2                 8
  CLUS_4               0                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5Q LOSS MUTATED        0      3      0      0      0      0
  5Q LOSS WILD-TYPE      8      7      4      5      5      4
D37V8, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               3                 7
  CLUS_3               0                 4
  CLUS_4               0                 5
  CLUS_5               0                 5
  CLUS_6               0                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q LOSS MUTATED        1      0      2      0      0
  5Q LOSS WILD-TYPE      7      6      5      7      8
D37V9, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               0                 6
  CLUS_3               2                 5
  CLUS_4               0                 7
  CLUS_5               0                 8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q LOSS MUTATED        0      2      1      0      0
  5Q LOSS WILD-TYPE      6      6      8      7      6
D37V10, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               0                 6
  CLUS_2               2                 6
  CLUS_3               1                 8
  CLUS_4               0                 7
  CLUS_5               0                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = 6P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED        1      1      2      1
  6P LOSS WILD-TYPE     13      8      5      5
D38V1, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                13
  CLUS_2               1                 8
  CLUS_3               2                 5
  CLUS_4               1                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        1      4      0
  6P LOSS WILD-TYPE     13      6     12
D38V2, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                13
  CLUS_2               4                 6
  CLUS_3               0                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        1      1      3
  6P LOSS WILD-TYPE      9      7      9
D38V3, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               1                 7
  CLUS_3               3                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED        1      1      1      2
  6P LOSS WILD-TYPE      5      6      7      7
D38V4, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               1                 6
  CLUS_3               1                 7
  CLUS_4               2                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6P LOSS MUTATED        0      1      0      1      2      1
  6P LOSS WILD-TYPE      6      3      5      5      7      5
D38V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               0                 6
  CLUS_2               1                 3
  CLUS_3               0                 5
  CLUS_4               1                 5
  CLUS_5               2                 7
  CLUS_6               1                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6P LOSS MUTATED        0      1      0      2      1      1      0
  6P LOSS WILD-TYPE      4      4      5      7      5      4      2
D38V6, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               0                 4
  CLUS_2               1                 4
  CLUS_3               0                 5
  CLUS_4               2                 7
  CLUS_5               1                 5
  CLUS_6               1                 4
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED        1      1      0      3
  6P LOSS WILD-TYPE      9      5     10      7
D38V7, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               1                 5
  CLUS_3               0                10
  CLUS_4               3                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6P LOSS MUTATED        1      0      0      1      2      1
  6P LOSS WILD-TYPE      7     10      4      4      3      3
D38V8, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               0                10
  CLUS_3               0                 4
  CLUS_4               1                 4
  CLUS_5               2                 3
  CLUS_6               1                 3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P LOSS MUTATED        0      3      1      0      1
  6P LOSS WILD-TYPE      8      3      6      7      7
D38V9, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               3                 3
  CLUS_3               1                 6
  CLUS_4               0                 7
  CLUS_5               1                 7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P LOSS MUTATED        1      1      0      2      1
  6P LOSS WILD-TYPE      5      7      9      5      5
D38V10, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               1                 7
  CLUS_3               0                 9
  CLUS_4               2                 5
  CLUS_5               1                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = 6Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        4      5      7      4
  6Q LOSS WILD-TYPE     10      4      0      2
D39V1, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               4                10
  CLUS_2               5                 4
  CLUS_3               7                 0
  CLUS_4               4                 2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        3      8      9
  6Q LOSS WILD-TYPE     11      2      3
D39V2, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               3                11
  CLUS_2               8                 2
  CLUS_3               9                 3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        5      2      9
  6Q LOSS WILD-TYPE      5      6      3
D39V3, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               5                 5
  CLUS_2               2                 6
  CLUS_3               9                 3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        2      1      7      6
  6Q LOSS WILD-TYPE      4      6      1      3
D39V4, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               2                 4
  CLUS_2               1                 6
  CLUS_3               7                 1
  CLUS_4               6                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6Q LOSS MUTATED        1      4      2      6      4      3
  6Q LOSS WILD-TYPE      5      0      3      0      5      3
D39V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               4                 0
  CLUS_3               2                 3
  CLUS_4               6                 0
  CLUS_5               4                 5
  CLUS_6               3                 3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6Q LOSS MUTATED        1      2      4      4      6      2      1
  6Q LOSS WILD-TYPE      3      3      1      5      0      3      1
D39V6, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                 3
  CLUS_2               2                 3
  CLUS_3               4                 1
  CLUS_4               4                 5
  CLUS_5               6                 0
  CLUS_6               2                 3
  CLUS_7               1                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        5      3      4      8
  6Q LOSS WILD-TYPE      5      3      6      2
D39V7, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               5                 5
  CLUS_2               3                 3
  CLUS_3               4                 6
  CLUS_4               8                 2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6Q LOSS MUTATED        3      5      4      3      4      1
  6Q LOSS WILD-TYPE      5      5      0      2      1      3
D39V8, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               5                 5
  CLUS_3               4                 0
  CLUS_4               3                 2
  CLUS_5               4                 1
  CLUS_6               1                 3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q LOSS MUTATED        4      5      3      3      5
  6Q LOSS WILD-TYPE      4      1      4      4      3
D39V9, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               4                 4
  CLUS_2               5                 1
  CLUS_3               3                 4
  CLUS_4               3                 4
  CLUS_5               5                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q LOSS MUTATED        4      6      3      5      2
  6Q LOSS WILD-TYPE      2      2      6      2      4
D39V10, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               4                 2
  CLUS_2               6                 2
  CLUS_3               3                 6
  CLUS_4               5                 2
  CLUS_5               2                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = 7P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        3      0      1      0
  7P LOSS WILD-TYPE     11      9      6      6
D40V1, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               3                11
  CLUS_2               0                 9
  CLUS_3               1                 6
  CLUS_4               0                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        1      0      3
  7P LOSS WILD-TYPE     13     10      9
D40V2, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               1                13
  CLUS_2               0                10
  CLUS_3               3                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        2      0      0
  7P LOSS WILD-TYPE      8      8     12
D40V3, multiclass
[1] "Remove cluster labels:" "7P LOSS MUTATED"       
clus
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                2                28 
       TCGA-3X-AAV9        TCGA-3X-AAVA        TCGA-3X-AAVC        TCGA-4G-AAZT 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-W5-AA2G        TCGA-W5-AA2H        TCGA-W5-AA2I        TCGA-W5-AA2O 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-W5-AA2Q        TCGA-W5-AA2R        TCGA-W5-AA2U        TCGA-W5-AA2W 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-W5-AA2X        TCGA-W5-AA2Z        TCGA-W5-AA30        TCGA-W5-AA31 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-W5-AA33        TCGA-W5-AA34        TCGA-W5-AA36        TCGA-W5-AA38 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-W5-AA39        TCGA-W6-AA0S        TCGA-WD-A7RX        TCGA-YR-A95A 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-ZH-A8Y2        TCGA-ZH-A8Y5        TCGA-ZH-A8Y6        TCGA-ZH-A8Y8 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        1      0      1      0
  7P LOSS WILD-TYPE      5      7      7      9
D40V4, multiclass
[1] "Remove cluster labels:" "7P LOSS MUTATED"       
clus
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                2                28 
       TCGA-3X-AAV9        TCGA-3X-AAVA        TCGA-3X-AAVC        TCGA-4G-AAZT 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-W5-AA2G        TCGA-W5-AA2H        TCGA-W5-AA2I        TCGA-W5-AA2O 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-W5-AA2Q        TCGA-W5-AA2R        TCGA-W5-AA2U        TCGA-W5-AA2W 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-W5-AA2X        TCGA-W5-AA2Z        TCGA-W5-AA30        TCGA-W5-AA31 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-W5-AA33        TCGA-W5-AA34        TCGA-W5-AA36        TCGA-W5-AA38 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-W5-AA39        TCGA-W6-AA0S        TCGA-WD-A7RX        TCGA-YR-A95A 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-ZH-A8Y2        TCGA-ZH-A8Y5        TCGA-ZH-A8Y6        TCGA-ZH-A8Y8 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7P LOSS MUTATED        1      0      0      1      0      2
  7P LOSS WILD-TYPE      5      4      5      5      9      4
D40V5, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               0                 4
  CLUS_3               0                 5
  CLUS_4               1                 5
  CLUS_5               0                 9
  CLUS_6               2                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7P LOSS MUTATED        1      0      0      0      2      1      0
  7P LOSS WILD-TYPE      3      5      5      9      4      4      2
D40V6, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               1                 3
  CLUS_2               0                 5
  CLUS_3               0                 5
  CLUS_4               0                 9
  CLUS_5               2                 4
  CLUS_6               1                 4
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        0      0      2      2
  7P LOSS WILD-TYPE     10      6      8      8
D40V7, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               0                10
  CLUS_2               0                 6
  CLUS_3               2                 8
  CLUS_4               2                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7P LOSS MUTATED        1      1      1      0      1      0
  7P LOSS WILD-TYPE      7      9      3      5      4      4
D40V8, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                 9
  CLUS_3               1                 3
  CLUS_4               0                 5
  CLUS_5               1                 4
  CLUS_6               0                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P LOSS MUTATED        0      0      0      2      2
  7P LOSS WILD-TYPE      8      6      7      5      6
D40V9, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               0                 6
  CLUS_3               0                 7
  CLUS_4               2                 5
  CLUS_5               2                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P LOSS MUTATED        0      1      1      2      0
  7P LOSS WILD-TYPE      6      7      8      5      6
D40V10, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               0                 6
  CLUS_2               1                 7
  CLUS_3               1                 8
  CLUS_4               2                 5
  CLUS_5               0                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = 7Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        2      1      1      0
  7Q LOSS WILD-TYPE     12      8      6      6
D41V1, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               2                12
  CLUS_2               1                 8
  CLUS_3               1                 6
  CLUS_4               0                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        1      1      2
  7Q LOSS WILD-TYPE     13      9     10
D41V2, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1                13
  CLUS_2               1                 9
  CLUS_3               2                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        1      0      0
  7Q LOSS WILD-TYPE      9      8     12
D41V3, multiclass
[1] "Remove cluster labels:" "7Q LOSS MUTATED"       
clus
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                1                29 
       TCGA-3X-AAV9        TCGA-3X-AAVA        TCGA-3X-AAVC        TCGA-4G-AAZT 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-W5-AA2G        TCGA-W5-AA2H        TCGA-W5-AA2I        TCGA-W5-AA2O 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-W5-AA2Q        TCGA-W5-AA2R        TCGA-W5-AA2U        TCGA-W5-AA2W 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-W5-AA2X        TCGA-W5-AA2Z        TCGA-W5-AA30        TCGA-W5-AA31 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-W5-AA33        TCGA-W5-AA34        TCGA-W5-AA36        TCGA-W5-AA38 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-W5-AA39        TCGA-W6-AA0S        TCGA-WD-A7RX        TCGA-YR-A95A 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-ZH-A8Y1        TCGA-ZH-A8Y2        TCGA-ZH-A8Y5        TCGA-ZH-A8Y6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-ZH-A8Y8 
"7Q LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        0      0      1      0
  7Q LOSS WILD-TYPE      6      7      7      9
D41V4, multiclass
[1] "Remove cluster labels:" "7Q LOSS MUTATED"       
clus
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                1                29 
       TCGA-3X-AAV9        TCGA-3X-AAVA        TCGA-3X-AAVC        TCGA-4G-AAZT 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-W5-AA2G        TCGA-W5-AA2H        TCGA-W5-AA2I        TCGA-W5-AA2O 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-W5-AA2Q        TCGA-W5-AA2R        TCGA-W5-AA2U        TCGA-W5-AA2W 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-W5-AA2X        TCGA-W5-AA2Z        TCGA-W5-AA30        TCGA-W5-AA31 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-W5-AA33        TCGA-W5-AA34        TCGA-W5-AA36        TCGA-W5-AA38 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-W5-AA39        TCGA-W6-AA0S        TCGA-WD-A7RX        TCGA-YR-A95A 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-ZH-A8Y1        TCGA-ZH-A8Y2        TCGA-ZH-A8Y5        TCGA-ZH-A8Y6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-ZH-A8Y8 
"7Q LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7Q LOSS MUTATED        1      0      0      2      0      1
  7Q LOSS WILD-TYPE      5      4      5      4      9      5
D41V5, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               0                 4
  CLUS_3               0                 5
  CLUS_4               2                 4
  CLUS_5               0                 9
  CLUS_6               1                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7Q LOSS MUTATED        1      0      1      0      2      0      0
  7Q LOSS WILD-TYPE      3      5      4      9      4      5      2
D41V6, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1                 3
  CLUS_2               0                 5
  CLUS_3               1                 4
  CLUS_4               0                 9
  CLUS_5               2                 4
  CLUS_6               0                 5
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        0      0      1      3
  7Q LOSS WILD-TYPE     10      6      9      7
D41V7, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                10
  CLUS_2               0                 6
  CLUS_3               1                 9
  CLUS_4               3                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7Q LOSS MUTATED        1      1      2      0      0      0
  7Q LOSS WILD-TYPE      7      9      2      5      5      4
D41V8, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                 9
  CLUS_3               2                 2
  CLUS_4               0                 5
  CLUS_5               0                 5
  CLUS_6               0                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q LOSS MUTATED        0      0      0      1      3
  7Q LOSS WILD-TYPE      8      6      7      6      5
D41V9, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               0                 6
  CLUS_3               0                 7
  CLUS_4               1                 6
  CLUS_5               3                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q LOSS MUTATED        0      1      0      3      0
  7Q LOSS WILD-TYPE      6      7      9      4      6
D41V10, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                 6
  CLUS_2               1                 7
  CLUS_3               0                 9
  CLUS_4               3                 4
  CLUS_5               0                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = 8P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        4      0      1      5
  8P LOSS WILD-TYPE     10      9      6      1
D42V1, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               4                10
  CLUS_2               0                 9
  CLUS_3               1                 6
  CLUS_4               5                 1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        5      4      1
  8P LOSS WILD-TYPE      9      6     11
D42V2, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               5                 9
  CLUS_2               4                 6
  CLUS_3               1                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        3      3      4
  8P LOSS WILD-TYPE      7      5      8
D42V3, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               3                 5
  CLUS_3               4                 8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        1      3      4      2
  8P LOSS WILD-TYPE      5      4      4      7
D42V4, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               3                 4
  CLUS_3               4                 4
  CLUS_4               2                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8P LOSS MUTATED        1      0      1      2      6      0
  8P LOSS WILD-TYPE      5      4      4      4      3      6
D42V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               0                 4
  CLUS_3               1                 4
  CLUS_4               2                 4
  CLUS_5               6                 3
  CLUS_6               0                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P LOSS MUTATED        1      0      1      6      2      0      0
  8P LOSS WILD-TYPE      3      5      4      3      4      5      2
D42V6, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                 3
  CLUS_2               0                 5
  CLUS_3               1                 4
  CLUS_4               6                 3
  CLUS_5               2                 4
  CLUS_6               0                 5
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        4      2      0      4
  8P LOSS WILD-TYPE      6      4     10      6
D42V7, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               4                 6
  CLUS_2               2                 4
  CLUS_3               0                10
  CLUS_4               4                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8P LOSS MUTATED        1      1      0      3      2      3
  8P LOSS WILD-TYPE      7      9      4      2      3      1
D42V8, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                 9
  CLUS_3               0                 4
  CLUS_4               3                 2
  CLUS_5               2                 3
  CLUS_6               3                 1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P LOSS MUTATED        4      1      2      1      2
  8P LOSS WILD-TYPE      4      5      5      6      6
D42V9, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               4                 4
  CLUS_2               1                 5
  CLUS_3               2                 5
  CLUS_4               1                 6
  CLUS_5               2                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P LOSS MUTATED        1      2      1      2      4
  8P LOSS WILD-TYPE      5      6      8      5      2
D42V10, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               2                 6
  CLUS_3               1                 8
  CLUS_4               2                 5
  CLUS_5               4                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = 8Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        3      0      1      1
  8Q LOSS WILD-TYPE     11      9      6      5
D43V1, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               3                11
  CLUS_2               0                 9
  CLUS_3               1                 6
  CLUS_4               1                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        3      2      0
  8Q LOSS WILD-TYPE     11      8     12
D43V2, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               3                11
  CLUS_2               2                 8
  CLUS_3               0                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        2      1      2
  8Q LOSS WILD-TYPE      8      7     10
D43V3, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               1                 7
  CLUS_3               2                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        0      1      2      2
  8Q LOSS WILD-TYPE      6      6      6      7
D43V4, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                 6
  CLUS_2               1                 6
  CLUS_3               2                 6
  CLUS_4               2                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8Q LOSS MUTATED        0      0      0      1      4      0
  8Q LOSS WILD-TYPE      6      4      5      5      5      6
D43V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                 6
  CLUS_2               0                 4
  CLUS_3               0                 5
  CLUS_4               1                 5
  CLUS_5               4                 5
  CLUS_6               0                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q LOSS MUTATED        0      0      0      4      1      0      0
  8Q LOSS WILD-TYPE      4      5      5      5      5      5      2
D43V6, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                 4
  CLUS_2               0                 5
  CLUS_3               0                 5
  CLUS_4               4                 5
  CLUS_5               1                 5
  CLUS_6               0                 5
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        2      1      0      2
  8Q LOSS WILD-TYPE      8      5     10      8
D43V7, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               1                 5
  CLUS_3               0                10
  CLUS_4               2                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8Q LOSS MUTATED        0      0      0      2      1      2
  8Q LOSS WILD-TYPE      8     10      4      3      4      2
D43V8, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               0                10
  CLUS_3               0                 4
  CLUS_4               2                 3
  CLUS_5               1                 4
  CLUS_6               2                 2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q LOSS MUTATED        2      1      1      0      1
  8Q LOSS WILD-TYPE      6      5      6      7      7
D43V9, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               2                 6
  CLUS_2               1                 5
  CLUS_3               1                 6
  CLUS_4               0                 7
  CLUS_5               1                 7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q LOSS MUTATED        0      1      0      1      3
  8Q LOSS WILD-TYPE      6      7      9      6      3
D43V10, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                 6
  CLUS_2               1                 7
  CLUS_3               0                 9
  CLUS_4               1                 6
  CLUS_5               3                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = 9P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED        6      2      4      6
  9P LOSS WILD-TYPE      8      7      3      0
D44V1, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               6                 8
  CLUS_2               2                 7
  CLUS_3               4                 3
  CLUS_4               6                 0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        5      5      8
  9P LOSS WILD-TYPE      9      5      4
D44V2, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               5                 9
  CLUS_2               5                 5
  CLUS_3               8                 4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        7      3      4
  9P LOSS WILD-TYPE      3      5      8
D44V3, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               7                 3
  CLUS_2               3                 5
  CLUS_3               4                 8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED        4      2      7      1
  9P LOSS WILD-TYPE      2      5      1      8
D44V4, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               4                 2
  CLUS_2               2                 5
  CLUS_3               7                 1
  CLUS_4               1                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9P LOSS MUTATED        2      1      3      5      4      3
  9P LOSS WILD-TYPE      4      3      2      1      5      3
D44V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               2                 4
  CLUS_2               1                 3
  CLUS_3               3                 2
  CLUS_4               5                 1
  CLUS_5               4                 5
  CLUS_6               3                 3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P LOSS MUTATED        1      1      4      4      5      2      1
  9P LOSS WILD-TYPE      3      4      1      5      1      3      1
D44V6, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               1                 3
  CLUS_2               1                 4
  CLUS_3               4                 1
  CLUS_4               4                 5
  CLUS_5               5                 1
  CLUS_6               2                 3
  CLUS_7               1                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED        4      1      5      8
  9P LOSS WILD-TYPE      6      5      5      2
D44V7, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               4                 6
  CLUS_2               1                 5
  CLUS_3               5                 5
  CLUS_4               8                 2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9P LOSS MUTATED        2      5      4      2      4      1
  9P LOSS WILD-TYPE      6      5      0      3      1      3
D44V8, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               2                 6
  CLUS_2               5                 5
  CLUS_3               4                 0
  CLUS_4               2                 3
  CLUS_5               4                 1
  CLUS_6               1                 3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P LOSS MUTATED        3      1      5      4      5
  9P LOSS WILD-TYPE      5      5      2      3      3
D44V9, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               1                 5
  CLUS_3               5                 2
  CLUS_4               4                 3
  CLUS_5               5                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P LOSS MUTATED        1      6      4      5      2
  9P LOSS WILD-TYPE      5      2      5      2      4
D44V10, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               6                 2
  CLUS_3               4                 5
  CLUS_4               5                 2
  CLUS_5               2                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = 9Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED        8      1      4      6
  9Q LOSS WILD-TYPE      6      8      3      0
D45V1, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               8                 6
  CLUS_2               1                 8
  CLUS_3               4                 3
  CLUS_4               6                 0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        6      6      7
  9Q LOSS WILD-TYPE      8      4      5
D45V2, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               6                 8
  CLUS_2               6                 4
  CLUS_3               7                 5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        7      4      4
  9Q LOSS WILD-TYPE      3      4      8
D45V3, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               7                 3
  CLUS_2               4                 4
  CLUS_3               4                 8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED        4      3      7      1
  9Q LOSS WILD-TYPE      2      4      1      8
D45V4, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               4                 2
  CLUS_2               3                 4
  CLUS_3               7                 1
  CLUS_4               1                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9Q LOSS MUTATED        2      0      3      5      6      3
  9Q LOSS WILD-TYPE      4      4      2      1      3      3
D45V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               2                 4
  CLUS_2               0                 4
  CLUS_3               3                 2
  CLUS_4               5                 1
  CLUS_5               6                 3
  CLUS_6               3                 3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9Q LOSS MUTATED        1      1      4      6      5      2      0
  9Q LOSS WILD-TYPE      3      4      1      3      1      3      2
D45V6, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               1                 3
  CLUS_2               1                 4
  CLUS_3               4                 1
  CLUS_4               6                 3
  CLUS_5               5                 1
  CLUS_6               2                 3
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED        5      2      5      7
  9Q LOSS WILD-TYPE      5      4      5      3
D45V7, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               5                 5
  CLUS_2               2                 4
  CLUS_3               5                 5
  CLUS_4               7                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9Q LOSS MUTATED        2      5      3      2      4      3
  9Q LOSS WILD-TYPE      6      5      1      3      1      1
D45V8, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               2                 6
  CLUS_2               5                 5
  CLUS_3               3                 1
  CLUS_4               2                 3
  CLUS_5               4                 1
  CLUS_6               3                 1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q LOSS MUTATED        4      1      5      4      5
  9Q LOSS WILD-TYPE      4      5      2      3      3
D45V9, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               4                 4
  CLUS_2               1                 5
  CLUS_3               5                 2
  CLUS_4               4                 3
  CLUS_5               5                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q LOSS MUTATED        1      6      4      4      4
  9Q LOSS WILD-TYPE      5      2      5      3      2
D45V10, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               1                 5
  CLUS_2               6                 2
  CLUS_3               4                 5
  CLUS_4               4                 3
  CLUS_5               4                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = 10P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED        2      1      2      1
  10P LOSS WILD-TYPE     12      8      5      5
D46V1, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                1                  8
  CLUS_3                2                  5
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        3      1      2
  10P LOSS WILD-TYPE     11      9     10
D46V2, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                1                  9
  CLUS_3                2                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        3      0      1
  10P LOSS WILD-TYPE      7      8     11
D46V3, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                0                  8
  CLUS_3                1                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED        2      0      2      0
  10P LOSS WILD-TYPE      4      7      6      9
D46V4, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                0                  7
  CLUS_3                2                  6
  CLUS_4                0                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10P LOSS MUTATED        3      0      0      2      1      0
  10P LOSS WILD-TYPE      3      4      5      4      8      6
D46V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                3                  3
  CLUS_2                0                  4
  CLUS_3                0                  5
  CLUS_4                2                  4
  CLUS_5                1                  8
  CLUS_6                0                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P LOSS MUTATED        2      0      1      1      2      0      0
  10P LOSS WILD-TYPE      2      5      4      8      4      5      2
D46V6, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                2                  2
  CLUS_2                0                  5
  CLUS_3                1                  4
  CLUS_4                1                  8
  CLUS_5                2                  4
  CLUS_6                0                  5
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED        1      0      3      2
  10P LOSS WILD-TYPE      9      6      7      8
D46V7, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                0                  6
  CLUS_3                3                  7
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10P LOSS MUTATED        1      3      1      0      1      0
  10P LOSS WILD-TYPE      7      7      3      5      4      4
D46V8, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                3                  7
  CLUS_3                1                  3
  CLUS_4                0                  5
  CLUS_5                1                  4
  CLUS_6                0                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P LOSS MUTATED        1      0      3      1      1
  10P LOSS WILD-TYPE      7      6      4      6      7
D46V9, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                0                  6
  CLUS_3                3                  4
  CLUS_4                1                  6
  CLUS_5                1                  7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P LOSS MUTATED        1      5      0      0      0
  10P LOSS WILD-TYPE      5      3      9      7      6
D46V10, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                5                  3
  CLUS_3                0                  9
  CLUS_4                0                  7
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = 10Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED        1      1      2      1
  10Q LOSS WILD-TYPE     13      8      5      5
D47V1, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                1                 13
  CLUS_2                1                  8
  CLUS_3                2                  5
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        1      1      3
  10Q LOSS WILD-TYPE     13      9      9
D47V2, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                1                 13
  CLUS_2                1                  9
  CLUS_3                3                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        1      1      1
  10Q LOSS WILD-TYPE      9      7     11
D47V3, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                1                  7
  CLUS_3                1                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED        1      1      1      0
  10Q LOSS WILD-TYPE      5      6      7      9
D47V4, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                1                  6
  CLUS_3                1                  7
  CLUS_4                0                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10Q LOSS MUTATED        1      1      1      1      1      0
  10Q LOSS WILD-TYPE      5      3      4      5      8      6
D47V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                1                  3
  CLUS_3                1                  4
  CLUS_4                1                  5
  CLUS_5                1                  8
  CLUS_6                0                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10Q LOSS MUTATED        1      1      1      1      1      0      0
  10Q LOSS WILD-TYPE      3      4      4      8      5      5      2
D47V6, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                1                  3
  CLUS_2                1                  4
  CLUS_3                1                  4
  CLUS_4                1                  8
  CLUS_5                1                  5
  CLUS_6                0                  5
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED        2      1      1      1
  10Q LOSS WILD-TYPE      8      5      9      9
D47V7, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                1                  5
  CLUS_3                1                  9
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10Q LOSS MUTATED        2      2      1      0      0      0
  10Q LOSS WILD-TYPE      6      8      3      5      5      4
D47V8, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                2                  8
  CLUS_3                1                  3
  CLUS_4                0                  5
  CLUS_5                0                  5
  CLUS_6                0                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q LOSS MUTATED        2      1      1      0      1
  10Q LOSS WILD-TYPE      6      5      6      7      7
D47V9, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                1                  5
  CLUS_3                1                  6
  CLUS_4                0                  7
  CLUS_5                1                  7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q LOSS MUTATED        2      2      1      0      0
  10Q LOSS WILD-TYPE      4      6      8      7      6
D47V10, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                2                  6
  CLUS_3                1                  8
  CLUS_4                0                  7
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = 11P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED        3      0      4      1
  11P LOSS WILD-TYPE     11      9      3      5
D48V1, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                0                  9
  CLUS_3                4                  3
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        3      2      3
  11P LOSS WILD-TYPE     11      8      9
D48V2, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                2                  8
  CLUS_3                3                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        4      0      1
  11P LOSS WILD-TYPE      6      8     11
D48V3, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                4                  6
  CLUS_2                0                  8
  CLUS_3                1                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED        2      0      1      2
  11P LOSS WILD-TYPE      4      7      7      7
D48V4, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                0                  7
  CLUS_3                1                  7
  CLUS_4                2                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11P LOSS MUTATED        0      0      1      1      4      2
  11P LOSS WILD-TYPE      6      4      4      5      5      4
D48V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                0                  6
  CLUS_2                0                  4
  CLUS_3                1                  4
  CLUS_4                1                  5
  CLUS_5                4                  5
  CLUS_6                2                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P LOSS MUTATED        0      1      0      4      2      1      0
  11P LOSS WILD-TYPE      4      4      5      5      4      4      2
D48V6, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                0                  4
  CLUS_2                1                  4
  CLUS_3                0                  5
  CLUS_4                4                  5
  CLUS_5                2                  4
  CLUS_6                1                  4
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED        2      1      2      3
  11P LOSS WILD-TYPE      8      5      8      7
D48V7, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                1                  5
  CLUS_3                2                  8
  CLUS_4                3                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11P LOSS MUTATED        1      2      1      1      1      2
  11P LOSS WILD-TYPE      7      8      3      4      4      2
D48V8, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                2                  8
  CLUS_3                1                  3
  CLUS_4                1                  4
  CLUS_5                1                  4
  CLUS_6                2                  2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P LOSS MUTATED        1      1      1      2      3
  11P LOSS WILD-TYPE      7      5      6      5      5
D48V9, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                1                  5
  CLUS_3                1                  6
  CLUS_4                2                  5
  CLUS_5                3                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P LOSS MUTATED        0      3      1      2      2
  11P LOSS WILD-TYPE      6      5      8      5      4
D48V10, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                0                  6
  CLUS_2                3                  5
  CLUS_3                1                  8
  CLUS_4                2                  5
  CLUS_5                2                  4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = 11Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        3      0      4      2
  11Q LOSS WILD-TYPE     11      9      3      4
D49V1, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                0                  9
  CLUS_3                4                  3
  CLUS_4                2                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        3      3      3
  11Q LOSS WILD-TYPE     11      7      9
D49V2, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                3                  7
  CLUS_3                3                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        3      0      3
  11Q LOSS WILD-TYPE      7      8      9
D49V3, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                0                  8
  CLUS_3                3                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        1      0      2      3
  11Q LOSS WILD-TYPE      5      7      6      6
D49V4, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                0                  7
  CLUS_3                2                  6
  CLUS_4                3                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11Q LOSS MUTATED        0      0      2      0      5      2
  11Q LOSS WILD-TYPE      6      4      3      6      4      4
D49V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                0                  6
  CLUS_2                0                  4
  CLUS_3                2                  3
  CLUS_4                0                  6
  CLUS_5                5                  4
  CLUS_6                2                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q LOSS MUTATED        0      1      1      5      1      1      0
  11Q LOSS WILD-TYPE      4      4      4      4      5      4      2
D49V6, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                0                  4
  CLUS_2                1                  4
  CLUS_3                1                  4
  CLUS_4                5                  4
  CLUS_5                1                  5
  CLUS_6                1                  4
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        3      2      2      2
  11Q LOSS WILD-TYPE      7      4      8      8
D49V7, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                2                  4
  CLUS_3                2                  8
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11Q LOSS MUTATED        1      3      0      2      1      2
  11Q LOSS WILD-TYPE      7      7      4      3      4      2
D49V8, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                3                  7
  CLUS_3                0                  4
  CLUS_4                2                  3
  CLUS_5                1                  4
  CLUS_6                2                  2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q LOSS MUTATED        2      2      1      2      2
  11Q LOSS WILD-TYPE      6      4      6      5      6
D49V9, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                2                  4
  CLUS_3                1                  6
  CLUS_4                2                  5
  CLUS_5                2                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q LOSS MUTATED        0      2      2      2      3
  11Q LOSS WILD-TYPE      6      6      7      5      3
D49V10, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                0                  6
  CLUS_2                2                  6
  CLUS_3                2                  7
  CLUS_4                2                  5
  CLUS_5                3                  3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = 12Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        1      1      0      1
  12Q LOSS WILD-TYPE     13      8      7      5
D50V1, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                1                 13
  CLUS_2                1                  8
  CLUS_3                0                  7
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        2      1      0
  12Q LOSS WILD-TYPE     12      9     12
D50V2, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                1                  9
  CLUS_3                0                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        1      1      0
  12Q LOSS WILD-TYPE      9      7     12
D50V3, multiclass
[1] "Remove cluster labels:" "12Q LOSS MUTATED"      
clus
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 2                 28 
        TCGA-3X-AAV9         TCGA-3X-AAVA         TCGA-3X-AAVC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-4G-AAZT         TCGA-W5-AA2H         TCGA-W5-AA2I 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-W5-AA2O         TCGA-W5-AA2Q         TCGA-W5-AA2R 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-W5-AA2U         TCGA-W5-AA2W         TCGA-W5-AA2Z 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-W5-AA30         TCGA-W5-AA31         TCGA-W5-AA33 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-W5-AA34         TCGA-W5-AA36         TCGA-W5-AA38 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-W5-AA39         TCGA-W6-AA0S         TCGA-WD-A7RX 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-YR-A95A         TCGA-ZD-A8I3         TCGA-ZH-A8Y1 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-ZH-A8Y2         TCGA-ZH-A8Y5         TCGA-ZH-A8Y6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-ZH-A8Y8 
"12Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        1      1      0      0
  12Q LOSS WILD-TYPE      5      6      8      9
D50V4, multiclass
[1] "Remove cluster labels:" "12Q LOSS MUTATED"      
clus
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 2                 28 
        TCGA-3X-AAV9         TCGA-3X-AAVA         TCGA-3X-AAVC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-4G-AAZT         TCGA-W5-AA2H         TCGA-W5-AA2I 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-W5-AA2O         TCGA-W5-AA2Q         TCGA-W5-AA2R 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-W5-AA2U         TCGA-W5-AA2W         TCGA-W5-AA2Z 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-W5-AA30         TCGA-W5-AA31         TCGA-W5-AA33 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-W5-AA34         TCGA-W5-AA36         TCGA-W5-AA38 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-W5-AA39         TCGA-W6-AA0S         TCGA-WD-A7RX 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-YR-A95A         TCGA-ZD-A8I3         TCGA-ZH-A8Y1 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-ZH-A8Y2         TCGA-ZH-A8Y5         TCGA-ZH-A8Y6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-ZH-A8Y8 
"12Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12Q LOSS MUTATED        2      0      0      0      1      0
  12Q LOSS WILD-TYPE      4      4      5      6      8      6
D50V5, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                0                  4
  CLUS_3                0                  5
  CLUS_4                0                  6
  CLUS_5                1                  8
  CLUS_6                0                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12Q LOSS MUTATED        2      0      0      1      0      0      0
  12Q LOSS WILD-TYPE      2      5      5      8      6      5      2
D50V6, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                2                  2
  CLUS_2                0                  5
  CLUS_3                0                  5
  CLUS_4                1                  8
  CLUS_5                0                  6
  CLUS_6                0                  5
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        1      1      1      0
  12Q LOSS WILD-TYPE      9      5      9     10
D50V7, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                1                  5
  CLUS_3                1                  9
  CLUS_4                0                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12Q LOSS MUTATED        1      1      0      1      0      0
  12Q LOSS WILD-TYPE      7      9      4      4      5      4
D50V8, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                1                  9
  CLUS_3                0                  4
  CLUS_4                1                  4
  CLUS_5                0                  5
  CLUS_6                0                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q LOSS MUTATED        1      0      2      0      0
  12Q LOSS WILD-TYPE      7      6      5      7      8
D50V9, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                0                  6
  CLUS_3                2                  5
  CLUS_4                0                  7
  CLUS_5                0                  8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q LOSS MUTATED        1      1      0      0      1
  12Q LOSS WILD-TYPE      5      7      9      7      5
D50V10, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                1                  7
  CLUS_3                0                  9
  CLUS_4                0                  7
  CLUS_5                1                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = 13Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED        5      1      6      4
  13Q LOSS WILD-TYPE      9      8      1      2
D51V1, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                5                  9
  CLUS_2                1                  8
  CLUS_3                6                  1
  CLUS_4                4                  2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        6      4      6
  13Q LOSS WILD-TYPE      8      6      6
D51V2, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                6                  8
  CLUS_2                4                  6
  CLUS_3                6                  6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        4      5      3
  13Q LOSS WILD-TYPE      6      3      9
D51V3, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                4                  6
  CLUS_2                5                  3
  CLUS_3                3                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED        3      4      3      2
  13Q LOSS WILD-TYPE      3      3      5      7
D51V4, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                3                  3
  CLUS_2                4                  3
  CLUS_3                3                  5
  CLUS_4                2                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  13Q LOSS MUTATED        1      0      3      2      6      4
  13Q LOSS WILD-TYPE      5      4      2      4      3      2
D51V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                0                  4
  CLUS_3                3                  2
  CLUS_4                2                  4
  CLUS_5                6                  3
  CLUS_6                4                  2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  13Q LOSS MUTATED        1      2      1      6      3      3      0
  13Q LOSS WILD-TYPE      3      3      4      3      3      2      2
D51V6, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                1                  3
  CLUS_2                2                  3
  CLUS_3                1                  4
  CLUS_4                6                  3
  CLUS_5                3                  3
  CLUS_6                3                  2
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED        5      2      4      5
  13Q LOSS WILD-TYPE      5      4      6      5
D51V7, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                5                  5
  CLUS_2                2                  4
  CLUS_3                4                  6
  CLUS_4                5                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  13Q LOSS MUTATED        3      3      1      3      4      2
  13Q LOSS WILD-TYPE      5      7      3      2      1      2
D51V8, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                3                  5
  CLUS_2                3                  7
  CLUS_3                1                  3
  CLUS_4                3                  2
  CLUS_5                4                  1
  CLUS_6                2                  2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q LOSS MUTATED        4      2      4      3      3
  13Q LOSS WILD-TYPE      4      4      3      4      5
D51V9, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                4                  4
  CLUS_2                2                  4
  CLUS_3                4                  3
  CLUS_4                3                  4
  CLUS_5                3                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q LOSS MUTATED        1      4      4      3      4
  13Q LOSS WILD-TYPE      5      4      5      4      2
D51V10, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                4                  4
  CLUS_3                4                  5
  CLUS_4                3                  4
  CLUS_5                4                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = 14Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED        2      3      3      5
  14Q LOSS WILD-TYPE     12      6      4      1
D52V1, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                3                  6
  CLUS_3                3                  4
  CLUS_4                5                  1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        3      5      5
  14Q LOSS WILD-TYPE     11      5      7
D52V2, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                5                  5
  CLUS_3                5                  7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        1      3      5
  14Q LOSS WILD-TYPE      9      5      7
D52V3, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                3                  5
  CLUS_3                5                  7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED        0      2      6      1
  14Q LOSS WILD-TYPE      6      5      2      8
D52V4, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                0                  6
  CLUS_2                2                  5
  CLUS_3                6                  2
  CLUS_4                1                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  14Q LOSS MUTATED        0      2      3      4      3      1
  14Q LOSS WILD-TYPE      6      2      2      2      6      5
D52V5, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                0                  6
  CLUS_2                2                  2
  CLUS_3                3                  2
  CLUS_4                4                  2
  CLUS_5                3                  6
  CLUS_6                1                  5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  14Q LOSS MUTATED        0      2      4      3      4      0      0
  14Q LOSS WILD-TYPE      4      3      1      6      2      5      2
D52V6, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                0                  4
  CLUS_2                2                  3
  CLUS_3                4                  1
  CLUS_4                3                  6
  CLUS_5                4                  2
  CLUS_6                0                  5
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED        3      2      4      4
  14Q LOSS WILD-TYPE      7      4      6      6
D52V7, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                2                  4
  CLUS_3                4                  6
  CLUS_4                4                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  14Q LOSS MUTATED        2      5      1      2      2      1
  14Q LOSS WILD-TYPE      6      5      3      3      3      3
D52V8, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                5                  5
  CLUS_3                1                  3
  CLUS_4                2                  3
  CLUS_5                2                  3
  CLUS_6                1                  3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q LOSS MUTATED        2      2      3      4      2
  14Q LOSS WILD-TYPE      6      4      4      3      6
D52V9, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                2                  4
  CLUS_3                3                  4
  CLUS_4                4                  3
  CLUS_5                2                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q LOSS MUTATED        1      5      4      2      1
  14Q LOSS WILD-TYPE      5      3      5      5      5
D52V10, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                5                  3
  CLUS_3                4                  5
  CLUS_4                2                  5
  CLUS_5                1                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = 15Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED        3      0      0      2
  15Q LOSS WILD-TYPE     11      9      7      4
D53V1, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                0                  9
  CLUS_3                0                  7
  CLUS_4                2                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        3      1      1
  15Q LOSS WILD-TYPE     11      9     11
D53V2, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                1                  9
  CLUS_3                1                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        1      1      1
  15Q LOSS WILD-TYPE      9      7     11
D53V3, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                1                  7
  CLUS_3                1                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED        0      1      1      1
  15Q LOSS WILD-TYPE      6      6      7      8
D53V4, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                0                  6
  CLUS_2                1                  6
  CLUS_3                1                  7
  CLUS_4                1                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  15Q LOSS MUTATED        2      0      1      0      2      0
  15Q LOSS WILD-TYPE      4      4      4      6      7      6
D53V5, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                0                  4
  CLUS_3                1                  4
  CLUS_4                0                  6
  CLUS_5                2                  7
  CLUS_6                0                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  15Q LOSS MUTATED        2      0      1      2      0      0      0
  15Q LOSS WILD-TYPE      2      5      4      7      6      5      2
D53V6, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                2                  2
  CLUS_2                0                  5
  CLUS_3                1                  4
  CLUS_4                2                  7
  CLUS_5                0                  6
  CLUS_6                0                  5
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED        2      1      0      2
  15Q LOSS WILD-TYPE      8      5     10      8
D53V7, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                1                  5
  CLUS_3                0                 10
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  15Q LOSS MUTATED        2      1      0      1      0      1
  15Q LOSS WILD-TYPE      6      9      4      4      5      3
D53V8, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                1                  9
  CLUS_3                0                  4
  CLUS_4                1                  4
  CLUS_5                0                  5
  CLUS_6                1                  3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q LOSS MUTATED        2      0      1      0      2
  15Q LOSS WILD-TYPE      6      6      6      7      6
D53V9, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                0                  6
  CLUS_3                1                  6
  CLUS_4                0                  7
  CLUS_5                2                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q LOSS MUTATED        1      0      1      2      1
  15Q LOSS WILD-TYPE      5      8      8      5      5
D53V10, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                0                  8
  CLUS_3                1                  8
  CLUS_4                2                  5
  CLUS_5                1                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = 16P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        2      0      1      1
  16P LOSS WILD-TYPE     12      9      6      5
D54V1, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                0                  9
  CLUS_3                1                  6
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        1      1      2
  16P LOSS WILD-TYPE     13      9     10
D54V2, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                1                 13
  CLUS_2                1                  9
  CLUS_3                2                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        0      0      2
  16P LOSS WILD-TYPE     10      8     10
D54V3, multiclass
[1] "Remove cluster labels:" "16P LOSS MUTATED"      
clus
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 2                 28 
        TCGA-3X-AAV9         TCGA-3X-AAVA         TCGA-3X-AAVC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-4G-AAZT         TCGA-W5-AA2G         TCGA-W5-AA2H 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-W5-AA2I         TCGA-W5-AA2O         TCGA-W5-AA2Q 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-W5-AA2R         TCGA-W5-AA2U         TCGA-W5-AA2W 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-W5-AA2X         TCGA-W5-AA2Z         TCGA-W5-AA31 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-W5-AA33         TCGA-W5-AA34         TCGA-W5-AA36 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-W5-AA39         TCGA-W6-AA0S         TCGA-WD-A7RX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-YR-A95A         TCGA-ZD-A8I3         TCGA-ZH-A8Y1 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-ZH-A8Y2         TCGA-ZH-A8Y5         TCGA-ZH-A8Y6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-ZH-A8Y8 
"16P LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        0      0      2      0
  16P LOSS WILD-TYPE      6      7      6      9
D54V4, multiclass
[1] "Remove cluster labels:" "16P LOSS MUTATED"      
clus
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 2                 28 
        TCGA-3X-AAV9         TCGA-3X-AAVA         TCGA-3X-AAVC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-4G-AAZT         TCGA-W5-AA2G         TCGA-W5-AA2H 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-W5-AA2I         TCGA-W5-AA2O         TCGA-W5-AA2Q 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-W5-AA2R         TCGA-W5-AA2U         TCGA-W5-AA2W 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-W5-AA2X         TCGA-W5-AA2Z         TCGA-W5-AA31 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-W5-AA33         TCGA-W5-AA34         TCGA-W5-AA36 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-W5-AA39         TCGA-W6-AA0S         TCGA-WD-A7RX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-YR-A95A         TCGA-ZD-A8I3         TCGA-ZH-A8Y1 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-ZH-A8Y2         TCGA-ZH-A8Y5         TCGA-ZH-A8Y6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-ZH-A8Y8 
"16P LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16P LOSS MUTATED        0      0      2      1      1      0
  16P LOSS WILD-TYPE      6      4      3      5      8      6
D54V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                  6
  CLUS_2                0                  4
  CLUS_3                2                  3
  CLUS_4                1                  5
  CLUS_5                1                  8
  CLUS_6                0                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P LOSS MUTATED        0      1      1      1      1      0      0
  16P LOSS WILD-TYPE      4      4      4      8      5      5      2
D54V6, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                  4
  CLUS_2                1                  4
  CLUS_3                1                  4
  CLUS_4                1                  8
  CLUS_5                1                  5
  CLUS_6                0                  5
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        2      0      1      1
  16P LOSS WILD-TYPE      8      6      9      9
D54V7, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                0                  6
  CLUS_3                1                  9
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16P LOSS MUTATED        1      2      0      0      1      0
  16P LOSS WILD-TYPE      7      8      4      5      4      4
D54V8, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                2                  8
  CLUS_3                0                  4
  CLUS_4                0                  5
  CLUS_5                1                  4
  CLUS_6                0                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P LOSS MUTATED        1      0      2      1      0
  16P LOSS WILD-TYPE      7      6      5      6      8
D54V9, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                0                  6
  CLUS_3                2                  5
  CLUS_4                1                  6
  CLUS_5                0                  8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P LOSS MUTATED        0      2      2      0      0
  16P LOSS WILD-TYPE      6      6      7      7      6
D54V10, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                  6
  CLUS_2                2                  6
  CLUS_3                2                  7
  CLUS_4                0                  7
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = 16Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED        3      0      3      1
  16Q LOSS WILD-TYPE     11      9      4      5
D55V1, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                0                  9
  CLUS_3                3                  4
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        1      2      4
  16Q LOSS WILD-TYPE     13      8      8
D55V2, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                1                 13
  CLUS_2                2                  8
  CLUS_3                4                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        2      0      3
  16Q LOSS WILD-TYPE      8      8      9
D55V3, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                0                  8
  CLUS_3                3                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED        2      0      2      1
  16Q LOSS WILD-TYPE      4      7      6      8
D55V4, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                0                  7
  CLUS_3                2                  6
  CLUS_4                1                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16Q LOSS MUTATED        0      0      2      1      1      3
  16Q LOSS WILD-TYPE      6      4      3      5      8      3
D55V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                0                  6
  CLUS_2                0                  4
  CLUS_3                2                  3
  CLUS_4                1                  5
  CLUS_5                1                  8
  CLUS_6                3                  3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q LOSS MUTATED        0      1      1      1      1      3      0
  16Q LOSS WILD-TYPE      4      4      4      8      5      2      2
D55V6, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                0                  4
  CLUS_2                1                  4
  CLUS_3                1                  4
  CLUS_4                1                  8
  CLUS_5                1                  5
  CLUS_6                3                  2
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED        3      0      2      2
  16Q LOSS WILD-TYPE      7      6      8      8
D55V7, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                0                  6
  CLUS_3                2                  8
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16Q LOSS MUTATED        1      2      0      0      4      0
  16Q LOSS WILD-TYPE      7      8      4      5      1      4
D55V8, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                2                  8
  CLUS_3                0                  4
  CLUS_4                0                  5
  CLUS_5                4                  1
  CLUS_6                0                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q LOSS MUTATED        2      1      2      2      0
  16Q LOSS WILD-TYPE      6      5      5      5      8
D55V9, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                1                  5
  CLUS_3                2                  5
  CLUS_4                2                  5
  CLUS_5                0                  8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q LOSS MUTATED        1      2      3      1      0
  16Q LOSS WILD-TYPE      5      6      6      6      6
D55V10, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                2                  6
  CLUS_3                3                  6
  CLUS_4                1                  6
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = 17P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED        5      3      2      0
  17P LOSS WILD-TYPE      9      6      5      6
D56V1, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                5                  9
  CLUS_2                3                  6
  CLUS_3                2                  5
  CLUS_4                0                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED        5      4      1
  17P LOSS WILD-TYPE      9      6     11
D56V2, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                5                  9
  CLUS_2                4                  6
  CLUS_3                1                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED        2      1      3
  17P LOSS WILD-TYPE      8      7      9
D56V3, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                1                  7
  CLUS_3                3                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED        1      1      2      2
  17P LOSS WILD-TYPE      5      6      6      7
D56V4, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                1                  6
  CLUS_3                2                  6
  CLUS_4                2                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17P LOSS MUTATED        3      1      2      2      2      0
  17P LOSS WILD-TYPE      3      3      3      4      7      6
D56V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                3                  3
  CLUS_2                1                  3
  CLUS_3                2                  3
  CLUS_4                2                  4
  CLUS_5                2                  7
  CLUS_6                0                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17P LOSS MUTATED        2      3      2      2      1      0      0
  17P LOSS WILD-TYPE      2      2      3      7      5      5      2
D56V6, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                2                  2
  CLUS_2                3                  2
  CLUS_3                2                  3
  CLUS_4                2                  7
  CLUS_5                1                  5
  CLUS_6                0                  5
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED        5      1      2      2
  17P LOSS WILD-TYPE      5      5      8      8
D56V7, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                5                  5
  CLUS_2                1                  5
  CLUS_3                2                  8
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17P LOSS MUTATED        5      2      1      1      1      0
  17P LOSS WILD-TYPE      3      8      3      4      4      4
D56V8, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                5                  3
  CLUS_2                2                  8
  CLUS_3                1                  3
  CLUS_4                1                  4
  CLUS_5                1                  4
  CLUS_6                0                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P LOSS MUTATED        3      2      3      1      1
  17P LOSS WILD-TYPE      5      4      4      6      7
D56V9, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                3                  5
  CLUS_2                2                  4
  CLUS_3                3                  4
  CLUS_4                1                  6
  CLUS_5                1                  7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P LOSS MUTATED        3      3      2      1      1
  17P LOSS WILD-TYPE      3      5      7      6      5
D56V10, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                3                  3
  CLUS_2                3                  5
  CLUS_3                2                  7
  CLUS_4                1                  6
  CLUS_5                1                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = 18P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED        2      2      1      1
  18P LOSS WILD-TYPE     12      7      6      5
D57V1, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                2                  7
  CLUS_3                1                  6
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        2      2      2
  18P LOSS WILD-TYPE     12      8     10
D57V2, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                2                  8
  CLUS_3                2                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        1      2      1
  18P LOSS WILD-TYPE      9      6     11
D57V3, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                2                  6
  CLUS_3                1                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED        1      2      0      1
  18P LOSS WILD-TYPE      5      5      8      8
D57V4, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                2                  5
  CLUS_3                0                  8
  CLUS_4                1                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18P LOSS MUTATED        1      1      1      0      2      1
  18P LOSS WILD-TYPE      5      3      4      6      7      5
D57V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                1                  3
  CLUS_3                1                  4
  CLUS_4                0                  6
  CLUS_5                2                  7
  CLUS_6                1                  5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P LOSS MUTATED        1      2      0      2      0      1      0
  18P LOSS WILD-TYPE      3      3      5      7      6      4      2
D57V6, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                1                  3
  CLUS_2                2                  3
  CLUS_3                0                  5
  CLUS_4                2                  7
  CLUS_5                0                  6
  CLUS_6                1                  4
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED        2      2      2      0
  18P LOSS WILD-TYPE      8      4      8     10
D57V7, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                2                  4
  CLUS_3                2                  8
  CLUS_4                0                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18P LOSS MUTATED        3      2      0      1      0      0
  18P LOSS WILD-TYPE      5      8      4      4      5      4
D57V8, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                3                  5
  CLUS_2                2                  8
  CLUS_3                0                  4
  CLUS_4                1                  4
  CLUS_5                0                  5
  CLUS_6                0                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P LOSS MUTATED        1      1      2      2      0
  18P LOSS WILD-TYPE      7      5      5      5      8
D57V9, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                1                  5
  CLUS_3                2                  5
  CLUS_4                2                  5
  CLUS_5                0                  8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P LOSS MUTATED        2      1      2      0      1
  18P LOSS WILD-TYPE      4      7      7      7      5
D57V10, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                1                  7
  CLUS_3                2                  7
  CLUS_4                0                  7
  CLUS_5                1                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = 18Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED        5      1      1      1
  18Q LOSS WILD-TYPE      9      8      6      5
D58V1, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                5                  9
  CLUS_2                1                  8
  CLUS_3                1                  6
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        4      2      2
  18Q LOSS WILD-TYPE     10      8     10
D58V2, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                4                 10
  CLUS_2                2                  8
  CLUS_3                2                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        2      2      1
  18Q LOSS WILD-TYPE      8      6     11
D58V3, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                2                  6
  CLUS_3                1                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED        1      2      1      1
  18Q LOSS WILD-TYPE      5      5      7      8
D58V4, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                2                  5
  CLUS_3                1                  7
  CLUS_4                1                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18Q LOSS MUTATED        3      1      1      0      2      1
  18Q LOSS WILD-TYPE      3      3      4      6      7      5
D58V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                3                  3
  CLUS_2                1                  3
  CLUS_3                1                  4
  CLUS_4                0                  6
  CLUS_5                2                  7
  CLUS_6                1                  5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18Q LOSS MUTATED        2      2      1      2      0      1      0
  18Q LOSS WILD-TYPE      2      3      4      7      6      4      2
D58V6, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                2                  2
  CLUS_2                2                  3
  CLUS_3                1                  4
  CLUS_4                2                  7
  CLUS_5                0                  6
  CLUS_6                1                  4
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED        3      2      3      0
  18Q LOSS WILD-TYPE      7      4      7     10
D58V7, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                2                  4
  CLUS_3                3                  7
  CLUS_4                0                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18Q LOSS MUTATED        4      3      0      1      0      0
  18Q LOSS WILD-TYPE      4      7      4      4      5      4
D58V8, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                4                  4
  CLUS_2                3                  7
  CLUS_3                0                  4
  CLUS_4                1                  4
  CLUS_5                0                  5
  CLUS_6                0                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q LOSS MUTATED        2      1      3      2      0
  18Q LOSS WILD-TYPE      6      5      4      5      8
D58V9, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                1                  5
  CLUS_3                3                  4
  CLUS_4                2                  5
  CLUS_5                0                  8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q LOSS MUTATED        3      2      2      0      1
  18Q LOSS WILD-TYPE      3      6      7      7      5
D58V10, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                3                  3
  CLUS_2                2                  6
  CLUS_3                2                  7
  CLUS_4                0                  7
  CLUS_5                1                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = 19P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        1      1      1      1
  19P LOSS WILD-TYPE     13      8      6      5
D59V1, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 13
  CLUS_2                1                  8
  CLUS_3                1                  6
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        2      2      0
  19P LOSS WILD-TYPE     12      8     12
D59V2, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                2                  8
  CLUS_3                0                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        2      1      1
  19P LOSS WILD-TYPE      8      7     11
D59V3, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                1                  7
  CLUS_3                1                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        1      1      1      1
  19P LOSS WILD-TYPE      5      6      7      8
D59V4, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                1                  6
  CLUS_3                1                  7
  CLUS_4                1                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19P LOSS MUTATED        2      0      0      0      2      0
  19P LOSS WILD-TYPE      4      4      5      6      7      6
D59V5, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                0                  4
  CLUS_3                0                  5
  CLUS_4                0                  6
  CLUS_5                2                  7
  CLUS_6                0                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19P LOSS MUTATED        1      0      1      2      0      0      0
  19P LOSS WILD-TYPE      3      5      4      7      6      5      2
D59V6, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                  3
  CLUS_2                0                  5
  CLUS_3                1                  4
  CLUS_4                2                  7
  CLUS_5                0                  6
  CLUS_6                0                  5
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        0      2      2      0
  19P LOSS WILD-TYPE     10      4      8     10
D59V7, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                0                 10
  CLUS_2                2                  4
  CLUS_3                2                  8
  CLUS_4                0                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19P LOSS MUTATED        0      2      0      2      0      0
  19P LOSS WILD-TYPE      8      8      4      3      5      4
D59V8, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                2                  8
  CLUS_3                0                  4
  CLUS_4                2                  3
  CLUS_5                0                  5
  CLUS_6                0                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P LOSS MUTATED        0      1      3      0      0
  19P LOSS WILD-TYPE      8      5      4      7      8
D59V9, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                1                  5
  CLUS_3                3                  4
  CLUS_4                0                  7
  CLUS_5                0                  8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P LOSS MUTATED        0      2      0      0      2
  19P LOSS WILD-TYPE      6      6      9      7      4
D59V10, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                0                  6
  CLUS_2                2                  6
  CLUS_3                0                  9
  CLUS_4                0                  7
  CLUS_5                2                  4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = 19Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        2      0      1      0
  19Q LOSS WILD-TYPE     12      9      6      6
D60V1, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                0                  9
  CLUS_3                1                  6
  CLUS_4                0                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        2      1      0
  19Q LOSS WILD-TYPE     12      9     12
D60V2, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                1                  9
  CLUS_3                0                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        1      0      1
  19Q LOSS WILD-TYPE      9      8     11
D60V3, multiclass
[1] "Remove cluster labels:" "19Q LOSS MUTATED"      
clus
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 2                 28 
        TCGA-3X-AAV9         TCGA-3X-AAVA         TCGA-4G-AAZT 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-W5-AA2G         TCGA-W5-AA2H         TCGA-W5-AA2I 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-W5-AA2Q         TCGA-W5-AA2R         TCGA-W5-AA2U 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-W5-AA2W         TCGA-W5-AA2X         TCGA-W5-AA2Z 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-W5-AA30         TCGA-W5-AA31         TCGA-W5-AA33 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-W5-AA34         TCGA-W5-AA36         TCGA-W5-AA38 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-W5-AA39         TCGA-W6-AA0S         TCGA-WD-A7RX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-YR-A95A         TCGA-ZD-A8I3         TCGA-ZH-A8Y1 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-ZH-A8Y2         TCGA-ZH-A8Y5         TCGA-ZH-A8Y6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-ZH-A8Y8 
"19Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        0      0      1      1
  19Q LOSS WILD-TYPE      6      7      7      8
D60V4, multiclass
[1] "Remove cluster labels:" "19Q LOSS MUTATED"      
clus
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 2                 28 
        TCGA-3X-AAV9         TCGA-3X-AAVA         TCGA-4G-AAZT 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-W5-AA2G         TCGA-W5-AA2H         TCGA-W5-AA2I 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-W5-AA2Q         TCGA-W5-AA2R         TCGA-W5-AA2U 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-W5-AA2W         TCGA-W5-AA2X         TCGA-W5-AA2Z 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-W5-AA30         TCGA-W5-AA31         TCGA-W5-AA33 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-W5-AA34         TCGA-W5-AA36         TCGA-W5-AA38 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-W5-AA39         TCGA-W6-AA0S         TCGA-WD-A7RX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-YR-A95A         TCGA-ZD-A8I3         TCGA-ZH-A8Y1 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-ZH-A8Y2         TCGA-ZH-A8Y5         TCGA-ZH-A8Y6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-ZH-A8Y8 
"19Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19Q LOSS MUTATED        2      0      0      0      1      0
  19Q LOSS WILD-TYPE      4      4      5      6      8      6
D60V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                0                  4
  CLUS_3                0                  5
  CLUS_4                0                  6
  CLUS_5                1                  8
  CLUS_6                0                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q LOSS MUTATED        1      0      1      1      0      0      0
  19Q LOSS WILD-TYPE      3      5      4      8      6      5      2
D60V6, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                  3
  CLUS_2                0                  5
  CLUS_3                1                  4
  CLUS_4                1                  8
  CLUS_5                0                  6
  CLUS_6                0                  5
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        0      1      1      1
  19Q LOSS WILD-TYPE     10      5      9      9
D60V7, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                0                 10
  CLUS_2                1                  5
  CLUS_3                1                  9
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19Q LOSS MUTATED        1      1      0      1      0      0
  19Q LOSS WILD-TYPE      7      9      4      4      5      4
D60V8, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                1                  9
  CLUS_3                0                  4
  CLUS_4                1                  4
  CLUS_5                0                  5
  CLUS_6                0                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q LOSS MUTATED        0      1      1      0      1
  19Q LOSS WILD-TYPE      8      5      6      7      7
D60V9, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                1                  5
  CLUS_3                1                  6
  CLUS_4                0                  7
  CLUS_5                1                  7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q LOSS MUTATED        0      1      0      1      1
  19Q LOSS WILD-TYPE      6      7      9      6      5
D60V10, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                0                  6
  CLUS_2                1                  7
  CLUS_3                0                  9
  CLUS_4                1                  6
  CLUS_5                1                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = 20P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        3      1      1      0
  20P LOSS WILD-TYPE     11      8      6      6
D61V1, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                1                  8
  CLUS_3                1                  6
  CLUS_4                0                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        3      1      1
  20P LOSS WILD-TYPE     11      9     11
D61V2, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                3                 11
  CLUS_2                1                  9
  CLUS_3                1                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        1      0      1
  20P LOSS WILD-TYPE      9      8     11
D61V3, multiclass
[1] "Remove cluster labels:" "20P LOSS MUTATED"      
clus
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 2                 28 
        TCGA-3X-AAV9         TCGA-3X-AAVA         TCGA-4G-AAZT 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-W5-AA2G         TCGA-W5-AA2H         TCGA-W5-AA2I 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-W5-AA2O         TCGA-W5-AA2Q         TCGA-W5-AA2R 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-W5-AA2U         TCGA-W5-AA2W         TCGA-W5-AA2X 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-W5-AA2Z         TCGA-W5-AA30         TCGA-W5-AA31 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-W5-AA33         TCGA-W5-AA34         TCGA-W5-AA36 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-W5-AA38         TCGA-W5-AA39         TCGA-WD-A7RX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-YR-A95A         TCGA-ZD-A8I3         TCGA-ZH-A8Y1 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-ZH-A8Y2         TCGA-ZH-A8Y5         TCGA-ZH-A8Y6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-ZH-A8Y8 
"20P LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        0      0      1      1
  20P LOSS WILD-TYPE      6      7      7      8
D61V4, multiclass
[1] "Remove cluster labels:" "20P LOSS MUTATED"      
clus
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 2                 28 
        TCGA-3X-AAV9         TCGA-3X-AAVA         TCGA-4G-AAZT 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-W5-AA2G         TCGA-W5-AA2H         TCGA-W5-AA2I 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-W5-AA2O         TCGA-W5-AA2Q         TCGA-W5-AA2R 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-W5-AA2U         TCGA-W5-AA2W         TCGA-W5-AA2X 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-W5-AA2Z         TCGA-W5-AA30         TCGA-W5-AA31 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-W5-AA33         TCGA-W5-AA34         TCGA-W5-AA36 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-W5-AA38         TCGA-W5-AA39         TCGA-WD-A7RX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-YR-A95A         TCGA-ZD-A8I3         TCGA-ZH-A8Y1 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-ZH-A8Y2         TCGA-ZH-A8Y5         TCGA-ZH-A8Y6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-ZH-A8Y8 
"20P LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20P LOSS MUTATED        2      1      1      0      1      0
  20P LOSS WILD-TYPE      4      3      4      6      8      6
D61V5, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                1                  3
  CLUS_3                1                  4
  CLUS_4                0                  6
  CLUS_5                1                  8
  CLUS_6                0                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P LOSS MUTATED        1      2      1      1      0      0      0
  20P LOSS WILD-TYPE      3      3      4      8      6      5      2
D61V6, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                1                  3
  CLUS_2                2                  3
  CLUS_3                1                  4
  CLUS_4                1                  8
  CLUS_5                0                  6
  CLUS_6                0                  5
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        3      0      2      0
  20P LOSS WILD-TYPE      7      6      8     10
D61V7, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                0                  6
  CLUS_3                2                  8
  CLUS_4                0                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20P LOSS MUTATED        3      2      0      0      0      0
  20P LOSS WILD-TYPE      5      8      4      5      5      4
D61V8, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                3                  5
  CLUS_2                2                  8
  CLUS_3                0                  4
  CLUS_4                0                  5
  CLUS_5                0                  5
  CLUS_6                0                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P LOSS MUTATED        1      1      2      1      0
  20P LOSS WILD-TYPE      7      5      5      6      8
D61V9, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                1                  5
  CLUS_3                2                  5
  CLUS_4                1                  6
  CLUS_5                0                  8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P LOSS MUTATED        2      2      1      0      0
  20P LOSS WILD-TYPE      4      6      8      7      6
D61V10, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                2                  6
  CLUS_3                1                  8
  CLUS_4                0                  7
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = 21Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED        5      3      3      4
  21Q LOSS WILD-TYPE      9      6      4      2
D62V1, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                5                  9
  CLUS_2                3                  6
  CLUS_3                3                  4
  CLUS_4                4                  2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        7      4      4
  21Q LOSS WILD-TYPE      7      6      8
D62V2, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                7                  7
  CLUS_2                4                  6
  CLUS_3                4                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        3      3      4
  21Q LOSS WILD-TYPE      7      5      8
D62V3, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                3                  5
  CLUS_3                4                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED        2      2      4      2
  21Q LOSS WILD-TYPE      4      5      4      7
D62V4, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                2                  4
  CLUS_2                2                  5
  CLUS_3                4                  4
  CLUS_4                2                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  21Q LOSS MUTATED        4      1      3      2      3      2
  21Q LOSS WILD-TYPE      2      3      2      4      6      4
D62V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                4                  2
  CLUS_2                1                  3
  CLUS_3                3                  2
  CLUS_4                2                  4
  CLUS_5                3                  6
  CLUS_6                2                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  21Q LOSS MUTATED        3      2      4      3      1      2      0
  21Q LOSS WILD-TYPE      1      3      1      6      5      3      2
D62V6, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                3                  1
  CLUS_2                2                  3
  CLUS_3                4                  1
  CLUS_4                3                  6
  CLUS_5                1                  5
  CLUS_6                2                  3
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED        6      1      3      5
  21Q LOSS WILD-TYPE      4      5      7      5
D62V7, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                6                  4
  CLUS_2                1                  5
  CLUS_3                3                  7
  CLUS_4                5                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  21Q LOSS MUTATED        5      4      1      1      3      1
  21Q LOSS WILD-TYPE      3      6      3      4      2      3
D62V8, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                5                  3
  CLUS_2                4                  6
  CLUS_3                1                  3
  CLUS_4                1                  4
  CLUS_5                3                  2
  CLUS_6                1                  3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q LOSS MUTATED        4      2      4      2      3
  21Q LOSS WILD-TYPE      4      4      3      5      5
D62V9, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                4                  4
  CLUS_2                2                  4
  CLUS_3                4                  3
  CLUS_4                2                  5
  CLUS_5                3                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q LOSS MUTATED        4      3      3      4      1
  21Q LOSS WILD-TYPE      2      5      6      3      5
D62V10, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                4                  2
  CLUS_2                3                  5
  CLUS_3                3                  6
  CLUS_4                4                  3
  CLUS_5                1                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = 22Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED        1      2      1      1
  22Q LOSS WILD-TYPE     13      7      6      5
D63V1, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                1                 13
  CLUS_2                2                  7
  CLUS_3                1                  6
  CLUS_4                1                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        2      2      1
  22Q LOSS WILD-TYPE     12      8     11
D63V2, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                2                 12
  CLUS_2                2                  8
  CLUS_3                1                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        1      1      3
  22Q LOSS WILD-TYPE      9      7      9
D63V3, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                1                  7
  CLUS_3                3                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED        0      1      3      1
  22Q LOSS WILD-TYPE      6      6      5      8
D63V4, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                0                  6
  CLUS_2                1                  6
  CLUS_3                3                  5
  CLUS_4                1                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  22Q LOSS MUTATED        1      1      1      2      0      0
  22Q LOSS WILD-TYPE      5      3      4      4      9      6
D63V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                1                  3
  CLUS_3                1                  4
  CLUS_4                2                  4
  CLUS_5                0                  9
  CLUS_6                0                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q LOSS MUTATED        0      2      2      0      1      0      0
  22Q LOSS WILD-TYPE      4      3      3      9      5      5      2
D63V6, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                0                  4
  CLUS_2                2                  3
  CLUS_3                2                  3
  CLUS_4                0                  9
  CLUS_5                1                  5
  CLUS_6                0                  5
  CLUS_7                0                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED        2      0      2      1
  22Q LOSS WILD-TYPE      8      6      8      9
D63V7, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                0                  6
  CLUS_3                2                  8
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  22Q LOSS MUTATED        2      2      0      0      1      0
  22Q LOSS WILD-TYPE      6      8      4      5      4      4
D63V8, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                2                  6
  CLUS_2                2                  8
  CLUS_3                0                  4
  CLUS_4                0                  5
  CLUS_5                1                  4
  CLUS_6                0                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q LOSS MUTATED        1      1      1      2      0
  22Q LOSS WILD-TYPE      7      5      6      5      8
D63V9, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                1                  5
  CLUS_3                1                  6
  CLUS_4                2                  5
  CLUS_5                0                  8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q LOSS MUTATED        1      2      2      0      0
  22Q LOSS WILD-TYPE      5      6      7      7      6
D63V10, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                1                  5
  CLUS_2                2                  6
  CLUS_3                2                  7
  CLUS_4                0                  7
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = XP LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP LOSS MUTATED        2      5      5      3
  XP LOSS WILD-TYPE     12      4      2      3
D64V1, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               2                12
  CLUS_2               5                 4
  CLUS_3               5                 2
  CLUS_4               3                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP LOSS MUTATED        2      8      5
  XP LOSS WILD-TYPE     12      2      7
D64V2, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               2                12
  CLUS_2               8                 2
  CLUS_3               5                 7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP LOSS MUTATED        3      3      6
  XP LOSS WILD-TYPE      7      5      6
D64V3, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               3                 5
  CLUS_3               6                 6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP LOSS MUTATED        2      2      4      4
  XP LOSS WILD-TYPE      4      5      4      5
D64V4, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               2                 4
  CLUS_2               2                 5
  CLUS_3               4                 4
  CLUS_4               4                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XP LOSS MUTATED        0      3      3      3      4      2
  XP LOSS WILD-TYPE      6      1      2      3      5      4
D64V5, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               0                 6
  CLUS_2               3                 1
  CLUS_3               3                 2
  CLUS_4               3                 3
  CLUS_5               4                 5
  CLUS_6               2                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XP LOSS MUTATED        0      3      3      4      4      1      0
  XP LOSS WILD-TYPE      4      2      2      5      2      4      2
D64V6, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               0                 4
  CLUS_2               3                 2
  CLUS_3               3                 2
  CLUS_4               4                 5
  CLUS_5               4                 2
  CLUS_6               1                 4
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP LOSS MUTATED        4      4      3      4
  XP LOSS WILD-TYPE      6      2      7      6
D64V7, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               4                 6
  CLUS_2               4                 2
  CLUS_3               3                 7
  CLUS_4               4                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XP LOSS MUTATED        3      4      2      3      2      1
  XP LOSS WILD-TYPE      5      6      2      2      3      3
D64V8, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               4                 6
  CLUS_3               2                 2
  CLUS_4               3                 2
  CLUS_5               2                 3
  CLUS_6               1                 3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XP LOSS MUTATED        3      5      3      1      3
  XP LOSS WILD-TYPE      5      1      4      6      5
D64V9, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               5                 1
  CLUS_3               3                 4
  CLUS_4               1                 6
  CLUS_5               3                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XP LOSS MUTATED        2      5      3      2      3
  XP LOSS WILD-TYPE      4      3      6      5      3
D64V10, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               2                 4
  CLUS_2               5                 3
  CLUS_3               3                 6
  CLUS_4               2                 5
  CLUS_5               3                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = XQ LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        2      5      5      3
  XQ LOSS WILD-TYPE     12      4      2      3
D65V1, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               2                12
  CLUS_2               5                 4
  CLUS_3               5                 2
  CLUS_4               3                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        2      8      5
  XQ LOSS WILD-TYPE     12      2      7
D65V2, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               2                12
  CLUS_2               8                 2
  CLUS_3               5                 7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        3      3      6
  XQ LOSS WILD-TYPE      7      5      6
D65V3, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               3                 5
  CLUS_3               6                 6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        2      2      4      4
  XQ LOSS WILD-TYPE      4      5      4      5
D65V4, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               2                 4
  CLUS_2               2                 5
  CLUS_3               4                 4
  CLUS_4               4                 5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XQ LOSS MUTATED        0      3      3      3      4      2
  XQ LOSS WILD-TYPE      6      1      2      3      5      4
D65V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               0                 6
  CLUS_2               3                 1
  CLUS_3               3                 2
  CLUS_4               3                 3
  CLUS_5               4                 5
  CLUS_6               2                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ LOSS MUTATED        0      3      3      4      4      1      0
  XQ LOSS WILD-TYPE      4      2      2      5      2      4      2
D65V6, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               0                 4
  CLUS_2               3                 2
  CLUS_3               3                 2
  CLUS_4               4                 5
  CLUS_5               4                 2
  CLUS_6               1                 4
  CLUS_7               0                 2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        4      4      3      4
  XQ LOSS WILD-TYPE      6      2      7      6
D65V7, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               4                 6
  CLUS_2               4                 2
  CLUS_3               3                 7
  CLUS_4               4                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XQ LOSS MUTATED        3      4      2      3      2      1
  XQ LOSS WILD-TYPE      5      6      2      2      3      3
D65V8, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               4                 6
  CLUS_3               2                 2
  CLUS_4               3                 2
  CLUS_5               2                 3
  CLUS_6               1                 3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ LOSS MUTATED        3      5      3      1      3
  XQ LOSS WILD-TYPE      5      1      4      6      5
D65V9, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               3                 5
  CLUS_2               5                 1
  CLUS_3               3                 4
  CLUS_4               1                 6
  CLUS_5               3                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ LOSS MUTATED        2      5      3      2      3
  XQ LOSS WILD-TYPE      4      3      6      5      3
D65V10, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               2                 4
  CLUS_2               5                 3
  CLUS_3               3                 6
  CLUS_4               2                 5
  CLUS_5               3                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
