[1] "ofn"            "-oTCOADREAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/COADREAD-TP/22555066/COADREAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/COADREAD-TP/22524544/transformed.cor.cli.txt"

nPatients in clinical file=628, in cluster file=616, common to both=616
[1]  72 616
[1] "AMP PEAK  1(1Q31.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE 
                          145                           471 
  AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE 
                          145                           471 
[1] "AMP PEAK  2(2Q33.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE 
                          140                           476 
  AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE 
                          140                           476 
[1] "AMP PEAK  3(5P12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE 
                        118                         498 
  AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE 
                        118                         498 
[1] "AMP PEAK  4(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                          154                           462 
  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                          154                           462 
[1] "AMP PEAK  5(7P21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(7P21.3) MUTATED AMP PEAK  5(7P21.3) WILD-TYPE 
                          363                           253 
  AMP PEAK  5(7P21.3) MUTATED AMP PEAK  5(7P21.3) WILD-TYPE 
                          363                           253 
[1] "AMP PEAK  6(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE 
                           211                            405 
  AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE 
                           211                            405 
[1] "AMP PEAK  7(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE 
                           256                            360 
  AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE 
                           256                            360 
[1] "AMP PEAK  8(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE 
                           368                            248 
  AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE 
                           368                            248 
[1] "AMP PEAK  9(10Q22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(10Q22.3) MUTATED AMP PEAK  9(10Q22.3) WILD-TYPE 
                            40                            576 
  AMP PEAK  9(10Q22.3) MUTATED AMP PEAK  9(10Q22.3) WILD-TYPE 
                            40                            576 
[1] "AMP PEAK 10(11P15.5) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE 
                           138                            478 
  AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE 
                           138                            478 
[1] "AMP PEAK 11(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE 
                            153                             463 
  AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE 
                            153                             463 
[1] "AMP PEAK 12(13Q12.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE 
                            402                             214 
  AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE 
                            402                             214 
[1] "AMP PEAK 13(13Q12.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE 
                           396                            220 
  AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE 
                           396                            220 
[1] "AMP PEAK 14(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                           397                            219 
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                           397                            219 
[1] "AMP PEAK 15(15Q26.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE 
                            42                            574 
  AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE 
                            42                            574 
[1] "AMP PEAK 16(16P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(16P11.2) MUTATED AMP PEAK 16(16P11.2) WILD-TYPE 
                           173                            443 
  AMP PEAK 16(16P11.2) MUTATED AMP PEAK 16(16P11.2) WILD-TYPE 
                           173                            443 
[1] "AMP PEAK 17(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE 
                         160                          456 
  AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE 
                         160                          456 
[1] "AMP PEAK 18(17Q24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE 
                           144                            472 
  AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE 
                           144                            472 
[1] "AMP PEAK 19(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(19Q12) MUTATED AMP PEAK 19(19Q12) WILD-TYPE 
                         139                          477 
  AMP PEAK 19(19Q12) MUTATED AMP PEAK 19(19Q12) WILD-TYPE 
                         139                          477 
[1] "AMP PEAK 20(20P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(20P12.1) MUTATED AMP PEAK 20(20P12.1) WILD-TYPE 
                           278                            338 
  AMP PEAK 20(20P12.1) MUTATED AMP PEAK 20(20P12.1) WILD-TYPE 
                           278                            338 
[1] "AMP PEAK 21(20P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(20P11.21) MUTATED AMP PEAK 21(20P11.21) WILD-TYPE 
                            363                             253 
  AMP PEAK 21(20P11.21) MUTATED AMP PEAK 21(20P11.21) WILD-TYPE 
                            363                             253 
[1] "AMP PEAK 22(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE 
                            469                             147 
  AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE 
                            469                             147 
[1] "AMP PEAK 23(20Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(20Q12) MUTATED AMP PEAK 23(20Q12) WILD-TYPE 
                         471                          145 
  AMP PEAK 23(20Q12) MUTATED AMP PEAK 23(20Q12) WILD-TYPE 
                         471                          145 
[1] "AMP PEAK 24(20Q13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(20Q13.12) MUTATED AMP PEAK 24(20Q13.12) WILD-TYPE 
                            473                             143 
  AMP PEAK 24(20Q13.12) MUTATED AMP PEAK 24(20Q13.12) WILD-TYPE 
                            473                             143 
[1] "DEL PEAK  1(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           244                            372 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           244                            372 
[1] "DEL PEAK  2(1P33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                        176                         440 
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                        176                         440 
[1] "DEL PEAK  3(1P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE 
                          176                           440 
  DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE 
                          176                           440 
[1] "DEL PEAK  4(2P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                         21                         595 
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                         21                         595 
[1] "DEL PEAK  5(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                           35                           581 
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                           35                           581 
[1] "DEL PEAK  6(3P26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE 
                           93                           523 
  DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE 
                           93                           523 
[1] "DEL PEAK  7(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                          119                           497 
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                          119                           497 
[1] "DEL PEAK  8(3Q26.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE 
                            65                            551 
  DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE 
                            65                            551 
[1] "DEL PEAK  9(4P16.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4P16.1) MUTATED DEL PEAK  9(4P16.1) WILD-TYPE 
                          203                           413 
  DEL PEAK  9(4P16.1) MUTATED DEL PEAK  9(4P16.1) WILD-TYPE 
                          203                           413 
[1] "DEL PEAK 10(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE 
                          225                           391 
  DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE 
                          225                           391 
[1] "DEL PEAK 11(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE 
                          233                           383 
  DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE 
                          233                           383 
[1] "DEL PEAK 12(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE 
                          159                           457 
  DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE 
                          159                           457 
[1] "DEL PEAK 13(5Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE 
                          187                           429 
  DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE 
                          187                           429 
[1] "DEL PEAK 14(5Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE 
                          189                           427 
  DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE 
                          189                           427 
[1] "DEL PEAK 15(5Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(5Q23.3) MUTATED DEL PEAK 15(5Q23.3) WILD-TYPE 
                          161                           455 
  DEL PEAK 15(5Q23.3) MUTATED DEL PEAK 15(5Q23.3) WILD-TYPE 
                          161                           455 
[1] "DEL PEAK 16(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE 
                           80                           536 
  DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE 
                           80                           536 
[1] "DEL PEAK 17(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                         92                         524 
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                         92                         524 
[1] "DEL PEAK 18(7Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE 
                           17                           599 
  DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE 
                           17                           599 
[1] "DEL PEAK 19(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE 
                          290                           326 
  DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE 
                          290                           326 
[1] "DEL PEAK 20(8P22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE 
                        304                         312 
  DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE 
                        304                         312 
[1] "DEL PEAK 21(8Q11.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE 
                           47                           569 
  DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE 
                           47                           569 
[1] "DEL PEAK 22(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE 
                           88                           528 
  DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE 
                           88                           528 
[1] "DEL PEAK 23(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE 
                           115                            501 
  DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE 
                           115                            501 
[1] "DEL PEAK 24(10Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE 
                           139                            477 
  DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE 
                           139                            477 
[1] "DEL PEAK 25(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE 
                            161                             455 
  DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE 
                            161                             455 
[1] "DEL PEAK 26(10Q25.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE 
                           157                            459 
  DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE 
                           157                            459 
[1] "DEL PEAK 27(11Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE 
                           111                            505 
  DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE 
                           111                            505 
[1] "DEL PEAK 28(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE 
                            92                            524 
  DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE 
                            92                            524 
[1] "DEL PEAK 29(12Q21.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(12Q21.33) MUTATED DEL PEAK 29(12Q21.33) WILD-TYPE 
                             90                             526 
  DEL PEAK 29(12Q21.33) MUTATED DEL PEAK 29(12Q21.33) WILD-TYPE 
                             90                             526 
[1] "DEL PEAK 30(14Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(14Q11.2) MUTATED DEL PEAK 30(14Q11.2) WILD-TYPE 
                           212                            404 
  DEL PEAK 30(14Q11.2) MUTATED DEL PEAK 30(14Q11.2) WILD-TYPE 
                           212                            404 
[1] "DEL PEAK 31(14Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE 
                           220                            396 
  DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE 
                           220                            396 
[1] "DEL PEAK 32(15Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE 
                           249                            367 
  DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE 
                           249                            367 
[1] "DEL PEAK 33(15Q15.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE 
                           251                            365 
  DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE 
                           251                            365 
[1] "DEL PEAK 34(15Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE 
                           248                            368 
  DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE 
                           248                            368 
[1] "DEL PEAK 35(15Q22.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE 
                            238                             378 
  DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE 
                            238                             378 
[1] "DEL PEAK 36(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE 
                            69                            547 
  DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE 
                            69                            547 
[1] "DEL PEAK 37(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE 
                            84                            532 
  DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE 
                            84                            532 
[1] "DEL PEAK 38(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE 
                         370                          246 
  DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE 
                         370                          246 
[1] "DEL PEAK 39(17Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE 
                            95                            521 
  DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE 
                            95                            521 
[1] "DEL PEAK 40(18P11.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE 
                            370                             246 
  DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE 
                            370                             246 
[1] "DEL PEAK 41(18Q12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE 
                           416                            200 
  DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE 
                           416                            200 
[1] "DEL PEAK 42(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE 
                           432                            184 
  DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE 
                           432                            184 
[1] "DEL PEAK 43(18Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE 
                           427                            189 
  DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE 
                           427                            189 
[1] "DEL PEAK 44(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE 
                            97                            519 
  DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE 
                            97                            519 
[1] "DEL PEAK 45(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE 
                           136                            480 
  DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE 
                           136                            480 
[1] "DEL PEAK 46(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE 
                           214                            402 
  DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE 
                           214                            402 
[1] "DEL PEAK 47(21Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 47(21Q21.1) MUTATED DEL PEAK 47(21Q21.1) WILD-TYPE 
                           210                            406 
  DEL PEAK 47(21Q21.1) MUTATED DEL PEAK 47(21Q21.1) WILD-TYPE 
                           210                            406 
[1] "DEL PEAK 48(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE 
                            228                             388 
  DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE 
                            228                             388 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 616 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 616 columns, 0 survival variables, and 12 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=9, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q31.1) MUTATED        9     14     16      7
  AMP PEAK  1(1Q31.1) WILD-TYPE     36     49     49     36
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                           9                            36
  CLUS_2                          14                            49
  CLUS_3                          16                            49
  CLUS_4                           7                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q31.1) MUTATED        7     20     19
  AMP PEAK  1(1Q31.1) WILD-TYPE     43     69     58
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                           7                            43
  CLUS_2                          20                            69
  CLUS_3                          19                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q31.1) MUTATED       27     69     41      8
  AMP PEAK  1(1Q31.1) WILD-TYPE    188    178     91     14
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          27                           188
  CLUS_2                          69                           178
  CLUS_3                          41                            91
  CLUS_4                           8                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q31.1) MUTATED       27     35     36
  AMP PEAK  1(1Q31.1) WILD-TYPE     90     94    108
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          27                            90
  CLUS_2                          35                            94
  CLUS_3                          36                           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q31.1) MUTATED       24     57     35
  AMP PEAK  1(1Q31.1) WILD-TYPE     84    140    142
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          24                            84
  CLUS_2                          57                           140
  CLUS_3                          35                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q31.1) MUTATED       46     46     24
  AMP PEAK  1(1Q31.1) WILD-TYPE    182    122     62
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          46                           182
  CLUS_2                          46                           122
  CLUS_3                          24                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q31.1) MUTATED       40     34     30     41
  AMP PEAK  1(1Q31.1) WILD-TYPE    116     94    101    157
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          40                           116
  CLUS_2                          34                            94
  CLUS_3                          30                           101
  CLUS_4                          41                           157
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q31.1) MUTATED       16     22     10     16     27     33
  AMP PEAK  1(1Q31.1) WILD-TYPE     64     64     54     41     63    105
                               vv
clus                            CLUS_7
  AMP PEAK  1(1Q31.1) MUTATED       21
  AMP PEAK  1(1Q31.1) WILD-TYPE     77
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          16                            64
  CLUS_2                          22                            64
  CLUS_3                          10                            54
  CLUS_4                          16                            41
  CLUS_5                          27                            63
  CLUS_6                          33                           105
  CLUS_7                          21                            77
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q31.1) MUTATED       31     31     24     42
  AMP PEAK  1(1Q31.1) WILD-TYPE    122     64     62    163
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          31                           122
  CLUS_2                          31                            64
  CLUS_3                          24                            62
  CLUS_4                          42                           163
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q31.1) MUTATED       13     18      7     16     12     11
  AMP PEAK  1(1Q31.1) WILD-TYPE     36     56     22     70     65     43
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  1(1Q31.1) MUTATED       15     10     26
  AMP PEAK  1(1Q31.1) WILD-TYPE     42     22     55
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          13                            36
  CLUS_2                          18                            56
  CLUS_3                           7                            22
  CLUS_4                          16                            70
  CLUS_5                          12                            65
  CLUS_6                          11                            43
  CLUS_7                          15                            42
  CLUS_8                          10                            22
  CLUS_9                          26                            55
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q31.1) MUTATED        3     15     12      3
  AMP PEAK  1(1Q31.1) WILD-TYPE     32     25     26     19
D1V11, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                           3                            32
  CLUS_2                          15                            25
  CLUS_3                          12                            26
  CLUS_4                           3                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q31.1) MUTATED       11      5     11      6
  AMP PEAK  1(1Q31.1) WILD-TYPE     52     11     23     16
D1V12, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          11                            52
  CLUS_2                           5                            11
  CLUS_3                          11                            23
  CLUS_4                           6                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(2Q33.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q33.1) MUTATED        7     16     14      3
  AMP PEAK  2(2Q33.1) WILD-TYPE     38     47     51     40
D2V1, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                           7                            38
  CLUS_2                          16                            47
  CLUS_3                          14                            51
  CLUS_4                           3                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q33.1) MUTATED        5     27      8
  AMP PEAK  2(2Q33.1) WILD-TYPE     45     62     69
D2V2, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                           5                            45
  CLUS_2                          27                            62
  CLUS_3                           8                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q33.1) MUTATED       23     70     33     14
  AMP PEAK  2(2Q33.1) WILD-TYPE    192    177     99      8
D2V3, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          23                           192
  CLUS_2                          70                           177
  CLUS_3                          33                            99
  CLUS_4                          14                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q33.1) MUTATED       22     46     30
  AMP PEAK  2(2Q33.1) WILD-TYPE     95     83    114
D2V4, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          22                            95
  CLUS_2                          46                            83
  CLUS_3                          30                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q33.1) MUTATED       31     43     37
  AMP PEAK  2(2Q33.1) WILD-TYPE     77    154    140
D2V5, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          31                            77
  CLUS_2                          43                           154
  CLUS_3                          37                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q33.1) MUTATED       59     32     20
  AMP PEAK  2(2Q33.1) WILD-TYPE    169    136     66
D2V6, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          59                           169
  CLUS_2                          32                           136
  CLUS_3                          20                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q33.1) MUTATED       56     15     32     36
  AMP PEAK  2(2Q33.1) WILD-TYPE    100    113     99    162
D2V7, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          56                           100
  CLUS_2                          15                           113
  CLUS_3                          32                            99
  CLUS_4                          36                           162
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(2Q33.1) MUTATED       27     17      7     13     32     33
  AMP PEAK  2(2Q33.1) WILD-TYPE     53     69     57     44     58    105
                               vv
clus                            CLUS_7
  AMP PEAK  2(2Q33.1) MUTATED       10
  AMP PEAK  2(2Q33.1) WILD-TYPE     88
D2V8, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          27                            53
  CLUS_2                          17                            69
  CLUS_3                           7                            57
  CLUS_4                          13                            44
  CLUS_5                          32                            58
  CLUS_6                          33                           105
  CLUS_7                          10                            88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q33.1) MUTATED       40     27     18     33
  AMP PEAK  2(2Q33.1) WILD-TYPE    113     68     68    172
D2V9, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          40                           113
  CLUS_2                          27                            68
  CLUS_3                          18                            68
  CLUS_4                          33                           172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(2Q33.1) MUTATED        9     19      5     25      4     15
  AMP PEAK  2(2Q33.1) WILD-TYPE     40     55     24     61     73     39
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  2(2Q33.1) MUTATED       14      6     21
  AMP PEAK  2(2Q33.1) WILD-TYPE     43     26     60
D2V10, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                           9                            40
  CLUS_2                          19                            55
  CLUS_3                           5                            24
  CLUS_4                          25                            61
  CLUS_5                           4                            73
  CLUS_6                          15                            39
  CLUS_7                          14                            43
  CLUS_8                           6                            26
  CLUS_9                          21                            60
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q33.1) MUTATED       10     14     10      5
  AMP PEAK  2(2Q33.1) WILD-TYPE     25     26     28     17
D2V11, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          10                            25
  CLUS_2                          14                            26
  CLUS_3                          10                            28
  CLUS_4                           5                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q33.1) MUTATED       19      5     10      5
  AMP PEAK  2(2Q33.1) WILD-TYPE     44     11     24     17
D2V12, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          19                            44
  CLUS_2                           5                            11
  CLUS_3                          10                            24
  CLUS_4                           5                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(5P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5P12) MUTATED        7     20     12      7
  AMP PEAK  3(5P12) WILD-TYPE     38     43     53     36
D3V1, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                         7                          38
  CLUS_2                        20                          43
  CLUS_3                        12                          53
  CLUS_4                         7                          36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5P12) MUTATED        8     27     11
  AMP PEAK  3(5P12) WILD-TYPE     42     62     66
D3V2, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                         8                          42
  CLUS_2                        27                          62
  CLUS_3                        11                          66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5P12) MUTATED       17     66     28      7
  AMP PEAK  3(5P12) WILD-TYPE    198    181    104     15
D3V3, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        17                         198
  CLUS_2                        66                         181
  CLUS_3                        28                         104
  CLUS_4                         7                          15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5P12) MUTATED       20     26     26
  AMP PEAK  3(5P12) WILD-TYPE     97    103    118
D3V4, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        20                          97
  CLUS_2                        26                         103
  CLUS_3                        26                         118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5P12) MUTATED       31     32     26
  AMP PEAK  3(5P12) WILD-TYPE     77    165    151
D3V5, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        31                          77
  CLUS_2                        32                         165
  CLUS_3                        26                         151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5P12) MUTATED       44     30     15
  AMP PEAK  3(5P12) WILD-TYPE    184    138     71
D3V6, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        44                         184
  CLUS_2                        30                         138
  CLUS_3                        15                          71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5P12) MUTATED       40     12     27     39
  AMP PEAK  3(5P12) WILD-TYPE    116    116    104    159
D3V7, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        40                         116
  CLUS_2                        12                         116
  CLUS_3                        27                         104
  CLUS_4                        39                         159
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  3(5P12) MUTATED       17     10      6     10     25     36     14
  AMP PEAK  3(5P12) WILD-TYPE     63     76     58     47     65    102     84
D3V8, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        17                          63
  CLUS_2                        10                          76
  CLUS_3                         6                          58
  CLUS_4                        10                          47
  CLUS_5                        25                          65
  CLUS_6                        36                         102
  CLUS_7                        14                          84
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5P12) MUTATED       24     22     20     33
  AMP PEAK  3(5P12) WILD-TYPE    129     73     66    172
D3V9, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        24                         129
  CLUS_2                        22                          73
  CLUS_3                        20                          66
  CLUS_4                        33                         172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  3(5P12) MUTATED        8     14      4     15     11      9      9
  AMP PEAK  3(5P12) WILD-TYPE     41     60     25     71     66     45     48
                             vv
clus                          CLUS_8 CLUS_9
  AMP PEAK  3(5P12) MUTATED        8     21
  AMP PEAK  3(5P12) WILD-TYPE     24     60
D3V10, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                         8                          41
  CLUS_2                        14                          60
  CLUS_3                         4                          25
  CLUS_4                        15                          71
  CLUS_5                        11                          66
  CLUS_6                         9                          45
  CLUS_7                         9                          48
  CLUS_8                         8                          24
  CLUS_9                        21                          60
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5P12) MUTATED        9     12      6      3
  AMP PEAK  3(5P12) WILD-TYPE     26     28     32     19
D3V11, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                         9                          26
  CLUS_2                        12                          28
  CLUS_3                         6                          32
  CLUS_4                         3                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5P12) MUTATED       14      4      5      7
  AMP PEAK  3(5P12) WILD-TYPE     49     12     29     15
D3V12, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        14                          49
  CLUS_2                         4                          12
  CLUS_3                         5                          29
  CLUS_4                         7                          15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(6P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(6P21.1) MUTATED        9     16     22      4
  AMP PEAK  4(6P21.1) WILD-TYPE     36     47     43     39
D4V1, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                           9                            36
  CLUS_2                          16                            47
  CLUS_3                          22                            43
  CLUS_4                           4                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(6P21.1) MUTATED        4     35     12
  AMP PEAK  4(6P21.1) WILD-TYPE     46     54     65
D4V2, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                           4                            46
  CLUS_2                          35                            54
  CLUS_3                          12                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(6P21.1) MUTATED       10     93     41     10
  AMP PEAK  4(6P21.1) WILD-TYPE    205    154     91     12
D4V3, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          10                           205
  CLUS_2                          93                           154
  CLUS_3                          41                            91
  CLUS_4                          10                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(6P21.1) MUTATED       26     42     34
  AMP PEAK  4(6P21.1) WILD-TYPE     91     87    110
D4V4, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          26                            91
  CLUS_2                          42                            87
  CLUS_3                          34                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(6P21.1) MUTATED       32     53     36
  AMP PEAK  4(6P21.1) WILD-TYPE     76    144    141
D4V5, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          32                            76
  CLUS_2                          53                           144
  CLUS_3                          36                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(6P21.1) MUTATED       52     42     27
  AMP PEAK  4(6P21.1) WILD-TYPE    176    126     59
D4V6, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          52                           176
  CLUS_2                          42                           126
  CLUS_3                          27                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(6P21.1) MUTATED       44     25     34     51
  AMP PEAK  4(6P21.1) WILD-TYPE    112    103     97    147
D4V7, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          44                           112
  CLUS_2                          25                           103
  CLUS_3                          34                            97
  CLUS_4                          51                           147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(6P21.1) MUTATED       19     20      7     20     31     44
  AMP PEAK  4(6P21.1) WILD-TYPE     61     66     57     37     59     94
                               vv
clus                            CLUS_7
  AMP PEAK  4(6P21.1) MUTATED       13
  AMP PEAK  4(6P21.1) WILD-TYPE     85
D4V8, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          19                            61
  CLUS_2                          20                            66
  CLUS_3                           7                            57
  CLUS_4                          20                            37
  CLUS_5                          31                            59
  CLUS_6                          44                            94
  CLUS_7                          13                            85
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(6P21.1) MUTATED       44     26     28     44
  AMP PEAK  4(6P21.1) WILD-TYPE    109     69     58    161
D4V9, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          44                           109
  CLUS_2                          26                            69
  CLUS_3                          28                            58
  CLUS_4                          44                           161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(6P21.1) MUTATED       13     19      6     28      9     12
  AMP PEAK  4(6P21.1) WILD-TYPE     36     55     23     58     68     42
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  4(6P21.1) MUTATED       20      7     28
  AMP PEAK  4(6P21.1) WILD-TYPE     37     25     53
D4V10, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          13                            36
  CLUS_2                          19                            55
  CLUS_3                           6                            23
  CLUS_4                          28                            58
  CLUS_5                           9                            68
  CLUS_6                          12                            42
  CLUS_7                          20                            37
  CLUS_8                           7                            25
  CLUS_9                          28                            53
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(6P21.1) MUTATED        9     13     16      5
  AMP PEAK  4(6P21.1) WILD-TYPE     26     27     22     17
D4V11, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                           9                            26
  CLUS_2                          13                            27
  CLUS_3                          16                            22
  CLUS_4                           5                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(6P21.1) MUTATED       14      8     12      9
  AMP PEAK  4(6P21.1) WILD-TYPE     49      8     22     13
D4V12, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          14                            49
  CLUS_2                           8                             8
  CLUS_3                          12                            22
  CLUS_4                           9                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(7P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(7P21.3) MUTATED       16     42     37     15
  AMP PEAK  5(7P21.3) WILD-TYPE     29     21     28     28
D5V1, multiclass
        clus
vv       AMP PEAK  5(7P21.3) MUTATED AMP PEAK  5(7P21.3) WILD-TYPE
  CLUS_1                          16                            29
  CLUS_2                          42                            21
  CLUS_3                          37                            28
  CLUS_4                          15                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7P21.3) MUTATED       13     64     33
  AMP PEAK  5(7P21.3) WILD-TYPE     37     25     44
D5V2, multiclass
        clus
vv       AMP PEAK  5(7P21.3) MUTATED AMP PEAK  5(7P21.3) WILD-TYPE
  CLUS_1                          13                            37
  CLUS_2                          64                            25
  CLUS_3                          33                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(7P21.3) MUTATED       60    190     92     21
  AMP PEAK  5(7P21.3) WILD-TYPE    155     57     40      1
D5V3, multiclass
        clus
vv       AMP PEAK  5(7P21.3) MUTATED AMP PEAK  5(7P21.3) WILD-TYPE
  CLUS_1                          60                           155
  CLUS_2                         190                            57
  CLUS_3                          92                            40
  CLUS_4                          21                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7P21.3) MUTATED       67    101     79
  AMP PEAK  5(7P21.3) WILD-TYPE     50     28     65
D5V4, multiclass
        clus
vv       AMP PEAK  5(7P21.3) MUTATED AMP PEAK  5(7P21.3) WILD-TYPE
  CLUS_1                          67                            50
  CLUS_2                         101                            28
  CLUS_3                          79                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7P21.3) MUTATED       71    113     96
  AMP PEAK  5(7P21.3) WILD-TYPE     37     84     81
D5V5, multiclass
        clus
vv       AMP PEAK  5(7P21.3) MUTATED AMP PEAK  5(7P21.3) WILD-TYPE
  CLUS_1                          71                            37
  CLUS_2                         113                            84
  CLUS_3                          96                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(7P21.3) MUTATED      139     85     56
  AMP PEAK  5(7P21.3) WILD-TYPE     89     83     30
D5V6, multiclass
        clus
vv       AMP PEAK  5(7P21.3) MUTATED AMP PEAK  5(7P21.3) WILD-TYPE
  CLUS_1                         139                            89
  CLUS_2                          85                            83
  CLUS_3                          56                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(7P21.3) MUTATED      118     61     78    104
  AMP PEAK  5(7P21.3) WILD-TYPE     38     67     53     94
D5V7, multiclass
        clus
vv       AMP PEAK  5(7P21.3) MUTATED AMP PEAK  5(7P21.3) WILD-TYPE
  CLUS_1                         118                            38
  CLUS_2                          61                            67
  CLUS_3                          78                            53
  CLUS_4                         104                            94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(7P21.3) MUTATED       53     54     14     42     73     91
  AMP PEAK  5(7P21.3) WILD-TYPE     27     32     50     15     17     47
                               vv
clus                            CLUS_7
  AMP PEAK  5(7P21.3) MUTATED       34
  AMP PEAK  5(7P21.3) WILD-TYPE     64
D5V8, multiclass
        clus
vv       AMP PEAK  5(7P21.3) MUTATED AMP PEAK  5(7P21.3) WILD-TYPE
  CLUS_1                          53                            27
  CLUS_2                          54                            32
  CLUS_3                          14                            50
  CLUS_4                          42                            15
  CLUS_5                          73                            17
  CLUS_6                          91                            47
  CLUS_7                          34                            64
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(7P21.3) MUTATED       96     62     62    101
  AMP PEAK  5(7P21.3) WILD-TYPE     57     33     24    104
D5V9, multiclass
        clus
vv       AMP PEAK  5(7P21.3) MUTATED AMP PEAK  5(7P21.3) WILD-TYPE
  CLUS_1                          96                            57
  CLUS_2                          62                            33
  CLUS_3                          62                            24
  CLUS_4                         101                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(7P21.3) MUTATED       32     49     16     60     22     27
  AMP PEAK  5(7P21.3) WILD-TYPE     17     25     13     26     55     27
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  5(7P21.3) MUTATED       41     16     58
  AMP PEAK  5(7P21.3) WILD-TYPE     16     16     23
D5V10, multiclass
        clus
vv       AMP PEAK  5(7P21.3) MUTATED AMP PEAK  5(7P21.3) WILD-TYPE
  CLUS_1                          32                            17
  CLUS_2                          49                            25
  CLUS_3                          16                            13
  CLUS_4                          60                            26
  CLUS_5                          22                            55
  CLUS_6                          27                            27
  CLUS_7                          41                            16
  CLUS_8                          16                            16
  CLUS_9                          58                            23
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(7P21.3) MUTATED       25     30     29     10
  AMP PEAK  5(7P21.3) WILD-TYPE     10     10      9     12
D5V11, multiclass
        clus
vv       AMP PEAK  5(7P21.3) MUTATED AMP PEAK  5(7P21.3) WILD-TYPE
  CLUS_1                          25                            10
  CLUS_2                          30                            10
  CLUS_3                          29                             9
  CLUS_4                          10                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(7P21.3) MUTATED       40     14     23     17
  AMP PEAK  5(7P21.3) WILD-TYPE     23      2     11      5
D5V12, multiclass
        clus
vv       AMP PEAK  5(7P21.3) MUTATED AMP PEAK  5(7P21.3) WILD-TYPE
  CLUS_1                          40                            23
  CLUS_2                          14                             2
  CLUS_3                          23                            11
  CLUS_4                          17                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(8P11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8P11.23) MUTATED        9     22     17     12
  AMP PEAK  6(8P11.23) WILD-TYPE     36     41     48     31
D6V1, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                            9                             36
  CLUS_2                           22                             41
  CLUS_3                           17                             48
  CLUS_4                           12                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.23) MUTATED       11     32     17
  AMP PEAK  6(8P11.23) WILD-TYPE     39     57     60
D6V2, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           11                             39
  CLUS_2                           32                             57
  CLUS_3                           17                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8P11.23) MUTATED       44     88     69     10
  AMP PEAK  6(8P11.23) WILD-TYPE    171    159     63     12
D6V3, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           44                            171
  CLUS_2                           88                            159
  CLUS_3                           69                             63
  CLUS_4                           10                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.23) MUTATED       38     62     48
  AMP PEAK  6(8P11.23) WILD-TYPE     79     67     96
D6V4, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           38                             79
  CLUS_2                           62                             67
  CLUS_3                           48                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.23) MUTATED       43     64     53
  AMP PEAK  6(8P11.23) WILD-TYPE     65    133    124
D6V5, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           43                             65
  CLUS_2                           64                            133
  CLUS_3                           53                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.23) MUTATED       80     51     29
  AMP PEAK  6(8P11.23) WILD-TYPE    148    117     57
D6V6, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           80                            148
  CLUS_2                           51                            117
  CLUS_3                           29                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8P11.23) MUTATED       66     41     48     54
  AMP PEAK  6(8P11.23) WILD-TYPE     90     87     83    144
D6V7, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           66                             90
  CLUS_2                           41                             87
  CLUS_3                           48                             83
  CLUS_4                           54                            144
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(8P11.23) MUTATED       36     28     22     21     39     43
  AMP PEAK  6(8P11.23) WILD-TYPE     44     58     42     36     51     95
                                vv
clus                             CLUS_7
  AMP PEAK  6(8P11.23) MUTATED       20
  AMP PEAK  6(8P11.23) WILD-TYPE     78
D6V8, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           36                             44
  CLUS_2                           28                             58
  CLUS_3                           22                             42
  CLUS_4                           21                             36
  CLUS_5                           39                             51
  CLUS_6                           43                             95
  CLUS_7                           20                             78
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8P11.23) MUTATED       61     32     37     56
  AMP PEAK  6(8P11.23) WILD-TYPE     92     63     49    149
D6V9, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           61                             92
  CLUS_2                           32                             63
  CLUS_3                           37                             49
  CLUS_4                           56                            149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(8P11.23) MUTATED       15     30     17     33     23     17
  AMP PEAK  6(8P11.23) WILD-TYPE     34     44     12     53     54     37
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  6(8P11.23) MUTATED       19      7     25
  AMP PEAK  6(8P11.23) WILD-TYPE     38     25     56
D6V10, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           15                             34
  CLUS_2                           30                             44
  CLUS_3                           17                             12
  CLUS_4                           33                             53
  CLUS_5                           23                             54
  CLUS_6                           17                             37
  CLUS_7                           19                             38
  CLUS_8                            7                             25
  CLUS_9                           25                             56
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8P11.23) MUTATED       13     18     16      6
  AMP PEAK  6(8P11.23) WILD-TYPE     22     22     22     16
D6V11, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           13                             22
  CLUS_2                           18                             22
  CLUS_3                           16                             22
  CLUS_4                            6                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8P11.23) MUTATED       27      6     11      9
  AMP PEAK  6(8P11.23) WILD-TYPE     36     10     23     13
D6V12, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           27                             36
  CLUS_2                            6                             10
  CLUS_3                           11                             23
  CLUS_4                            9                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8P11.21) MUTATED       13     30     23     13
  AMP PEAK  7(8P11.21) WILD-TYPE     32     33     42     30
D7V1, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           13                             32
  CLUS_2                           30                             33
  CLUS_3                           23                             42
  CLUS_4                           13                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.21) MUTATED       13     43     23
  AMP PEAK  7(8P11.21) WILD-TYPE     37     46     54
D7V2, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           13                             37
  CLUS_2                           43                             46
  CLUS_3                           23                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8P11.21) MUTATED       47    103     96     10
  AMP PEAK  7(8P11.21) WILD-TYPE    168    144     36     12
D7V3, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           47                            168
  CLUS_2                          103                            144
  CLUS_3                           96                             36
  CLUS_4                           10                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.21) MUTATED       48     71     56
  AMP PEAK  7(8P11.21) WILD-TYPE     69     58     88
D7V4, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           48                             69
  CLUS_2                           71                             58
  CLUS_3                           56                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.21) MUTATED       48     78     70
  AMP PEAK  7(8P11.21) WILD-TYPE     60    119    107
D7V5, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           48                             60
  CLUS_2                           78                            119
  CLUS_3                           70                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.21) MUTATED      100     61     35
  AMP PEAK  7(8P11.21) WILD-TYPE    128    107     51
D7V6, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                          100                            128
  CLUS_2                           61                            107
  CLUS_3                           35                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8P11.21) MUTATED       75     46     61     72
  AMP PEAK  7(8P11.21) WILD-TYPE     81     82     70    126
D7V7, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           75                             81
  CLUS_2                           46                             82
  CLUS_3                           61                             70
  CLUS_4                           72                            126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8P11.21) MUTATED       37     35     23     25     48     57
  AMP PEAK  7(8P11.21) WILD-TYPE     43     51     41     32     42     81
                                vv
clus                             CLUS_7
  AMP PEAK  7(8P11.21) MUTATED       29
  AMP PEAK  7(8P11.21) WILD-TYPE     69
D7V8, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           37                             43
  CLUS_2                           35                             51
  CLUS_3                           23                             41
  CLUS_4                           25                             32
  CLUS_5                           48                             42
  CLUS_6                           57                             81
  CLUS_7                           29                             69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8P11.21) MUTATED       70     37     42     74
  AMP PEAK  7(8P11.21) WILD-TYPE     83     58     44    131
D7V9, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           70                             83
  CLUS_2                           37                             58
  CLUS_3                           42                             44
  CLUS_4                           74                            131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8P11.21) MUTATED       19     34     18     41     28     19
  AMP PEAK  7(8P11.21) WILD-TYPE     30     40     11     45     49     35
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  7(8P11.21) MUTATED       22     10     32
  AMP PEAK  7(8P11.21) WILD-TYPE     35     22     49
D7V10, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           19                             30
  CLUS_2                           34                             40
  CLUS_3                           18                             11
  CLUS_4                           41                             45
  CLUS_5                           28                             49
  CLUS_6                           19                             35
  CLUS_7                           22                             35
  CLUS_8                           10                             22
  CLUS_9                           32                             49
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8P11.21) MUTATED       16     23     19      9
  AMP PEAK  7(8P11.21) WILD-TYPE     19     17     19     13
D7V11, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           16                             19
  CLUS_2                           23                             17
  CLUS_3                           19                             19
  CLUS_4                            9                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8P11.21) MUTATED       34      9     15      9
  AMP PEAK  7(8P11.21) WILD-TYPE     29      7     19     13
D7V12, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           34                             29
  CLUS_2                            9                              7
  CLUS_3                           15                             19
  CLUS_4                            9                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q24.21) MUTATED       24     42     36     20
  AMP PEAK  8(8Q24.21) WILD-TYPE     21     21     29     23
D8V1, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           24                             21
  CLUS_2                           42                             21
  CLUS_3                           36                             29
  CLUS_4                           20                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q24.21) MUTATED       23     60     39
  AMP PEAK  8(8Q24.21) WILD-TYPE     27     29     38
D8V2, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           23                             27
  CLUS_2                           60                             29
  CLUS_3                           39                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q24.21) MUTATED       64    158    128     18
  AMP PEAK  8(8Q24.21) WILD-TYPE    151     89      4      4
D8V3, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           64                            151
  CLUS_2                          158                             89
  CLUS_3                          128                              4
  CLUS_4                           18                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q24.21) MUTATED       67    103     75
  AMP PEAK  8(8Q24.21) WILD-TYPE     50     26     69
D8V4, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           67                             50
  CLUS_2                          103                             26
  CLUS_3                           75                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q24.21) MUTATED       69    109    103
  AMP PEAK  8(8Q24.21) WILD-TYPE     39     88     74
D8V5, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           69                             39
  CLUS_2                          109                             88
  CLUS_3                          103                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q24.21) MUTATED      143     87     51
  AMP PEAK  8(8Q24.21) WILD-TYPE     85     81     35
D8V6, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                          143                             85
  CLUS_2                           87                             81
  CLUS_3                           51                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q24.21) MUTATED      111     57     85    112
  AMP PEAK  8(8Q24.21) WILD-TYPE     45     71     46     86
D8V7, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                          111                             45
  CLUS_2                           57                             71
  CLUS_3                           85                             46
  CLUS_4                          112                             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(8Q24.21) MUTATED       54     44     30     37     66     86
  AMP PEAK  8(8Q24.21) WILD-TYPE     26     42     34     20     24     52
                                vv
clus                             CLUS_7
  AMP PEAK  8(8Q24.21) MUTATED       48
  AMP PEAK  8(8Q24.21) WILD-TYPE     50
D8V8, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           54                             26
  CLUS_2                           44                             42
  CLUS_3                           30                             34
  CLUS_4                           37                             20
  CLUS_5                           66                             24
  CLUS_6                           86                             52
  CLUS_7                           48                             50
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q24.21) MUTATED       93     59     60    112
  AMP PEAK  8(8Q24.21) WILD-TYPE     60     36     26     93
D8V9, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           93                             60
  CLUS_2                           59                             36
  CLUS_3                           60                             26
  CLUS_4                          112                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(8Q24.21) MUTATED       25     47     21     64     34     32
  AMP PEAK  8(8Q24.21) WILD-TYPE     24     27      8     22     43     22
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  8(8Q24.21) MUTATED       33     18     50
  AMP PEAK  8(8Q24.21) WILD-TYPE     24     14     31
D8V10, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           25                             24
  CLUS_2                           47                             27
  CLUS_3                           21                              8
  CLUS_4                           64                             22
  CLUS_5                           34                             43
  CLUS_6                           32                             22
  CLUS_7                           33                             24
  CLUS_8                           18                             14
  CLUS_9                           50                             31
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q24.21) MUTATED       20     33     30     12
  AMP PEAK  8(8Q24.21) WILD-TYPE     15      7      8     10
D8V11, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           20                             15
  CLUS_2                           33                              7
  CLUS_3                           30                              8
  CLUS_4                           12                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q24.21) MUTATED       44     11     24     16
  AMP PEAK  8(8Q24.21) WILD-TYPE     19      5     10      6
D8V12, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           44                             19
  CLUS_2                           11                              5
  CLUS_3                           24                             10
  CLUS_4                           16                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(10Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(10Q22.3) MUTATED        2      3      4      2
  AMP PEAK  9(10Q22.3) WILD-TYPE     43     60     61     41
D9V1, multiclass
        clus
vv       AMP PEAK  9(10Q22.3) MUTATED AMP PEAK  9(10Q22.3) WILD-TYPE
  CLUS_1                            2                             43
  CLUS_2                            3                             60
  CLUS_3                            4                             61
  CLUS_4                            2                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(10Q22.3) MUTATED        2      3      6
  AMP PEAK  9(10Q22.3) WILD-TYPE     48     86     71
D9V2, multiclass
        clus
vv       AMP PEAK  9(10Q22.3) MUTATED AMP PEAK  9(10Q22.3) WILD-TYPE
  CLUS_1                            2                             48
  CLUS_2                            3                             86
  CLUS_3                            6                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(10Q22.3) MUTATED        6     17     14      3
  AMP PEAK  9(10Q22.3) WILD-TYPE    209    230    118     19
D9V3, multiclass
        clus
vv       AMP PEAK  9(10Q22.3) MUTATED AMP PEAK  9(10Q22.3) WILD-TYPE
  CLUS_1                            6                            209
  CLUS_2                           17                            230
  CLUS_3                           14                            118
  CLUS_4                            3                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(10Q22.3) MUTATED        6      8     14
  AMP PEAK  9(10Q22.3) WILD-TYPE    111    121    130
D9V4, multiclass
        clus
vv       AMP PEAK  9(10Q22.3) MUTATED AMP PEAK  9(10Q22.3) WILD-TYPE
  CLUS_1                            6                            111
  CLUS_2                            8                            121
  CLUS_3                           14                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(10Q22.3) MUTATED        2     16     13
  AMP PEAK  9(10Q22.3) WILD-TYPE    106    181    164
D9V5, multiclass
        clus
vv       AMP PEAK  9(10Q22.3) MUTATED AMP PEAK  9(10Q22.3) WILD-TYPE
  CLUS_1                            2                            106
  CLUS_2                           16                            181
  CLUS_3                           13                            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(10Q22.3) MUTATED       15     13      3
  AMP PEAK  9(10Q22.3) WILD-TYPE    213    155     83
D9V6, multiclass
        clus
vv       AMP PEAK  9(10Q22.3) MUTATED AMP PEAK  9(10Q22.3) WILD-TYPE
  CLUS_1                           15                            213
  CLUS_2                           13                            155
  CLUS_3                            3                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(10Q22.3) MUTATED       13      8      6     12
  AMP PEAK  9(10Q22.3) WILD-TYPE    143    120    125    186
D9V7, multiclass
        clus
vv       AMP PEAK  9(10Q22.3) MUTATED AMP PEAK  9(10Q22.3) WILD-TYPE
  CLUS_1                           13                            143
  CLUS_2                            8                            120
  CLUS_3                            6                            125
  CLUS_4                           12                            186
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(10Q22.3) MUTATED        7      8      3      4      4      5
  AMP PEAK  9(10Q22.3) WILD-TYPE     73     78     61     53     86    133
                                vv
clus                             CLUS_7
  AMP PEAK  9(10Q22.3) MUTATED        8
  AMP PEAK  9(10Q22.3) WILD-TYPE     90
D9V8, multiclass
        clus
vv       AMP PEAK  9(10Q22.3) MUTATED AMP PEAK  9(10Q22.3) WILD-TYPE
  CLUS_1                            7                             73
  CLUS_2                            8                             78
  CLUS_3                            3                             61
  CLUS_4                            4                             53
  CLUS_5                            4                             86
  CLUS_6                            5                            133
  CLUS_7                            8                             90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(10Q22.3) MUTATED        9      6      7     12
  AMP PEAK  9(10Q22.3) WILD-TYPE    144     89     79    193
D9V9, multiclass
        clus
vv       AMP PEAK  9(10Q22.3) MUTATED AMP PEAK  9(10Q22.3) WILD-TYPE
  CLUS_1                            9                            144
  CLUS_2                            6                             89
  CLUS_3                            7                             79
  CLUS_4                           12                            193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(10Q22.3) MUTATED        2      4      1      5      6      3
  AMP PEAK  9(10Q22.3) WILD-TYPE     47     70     28     81     71     51
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  9(10Q22.3) MUTATED        6      1      6
  AMP PEAK  9(10Q22.3) WILD-TYPE     51     31     75
D9V10, multiclass
        clus
vv       AMP PEAK  9(10Q22.3) MUTATED AMP PEAK  9(10Q22.3) WILD-TYPE
  CLUS_1                            2                             47
  CLUS_2                            4                             70
  CLUS_3                            1                             28
  CLUS_4                            5                             81
  CLUS_5                            6                             71
  CLUS_6                            3                             51
  CLUS_7                            6                             51
  CLUS_8                            1                             31
  CLUS_9                            6                             75
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(10Q22.3) MUTATED        6      4      2      3
  AMP PEAK  9(10Q22.3) WILD-TYPE     29     36     36     19
D9V11, multiclass
        clus
vv       AMP PEAK  9(10Q22.3) MUTATED AMP PEAK  9(10Q22.3) WILD-TYPE
  CLUS_1                            6                             29
  CLUS_2                            4                             36
  CLUS_3                            2                             36
  CLUS_4                            3                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(10Q22.3) MUTATED        6      1      3      5
  AMP PEAK  9(10Q22.3) WILD-TYPE     57     15     31     17
D9V12, multiclass
        clus
vv       AMP PEAK  9(10Q22.3) MUTATED AMP PEAK  9(10Q22.3) WILD-TYPE
  CLUS_1                            6                             57
  CLUS_2                            1                             15
  CLUS_3                            3                             31
  CLUS_4                            5                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(11P15.5) MUTATED        4     19     24      5
  AMP PEAK 10(11P15.5) WILD-TYPE     41     44     41     38
D10V1, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                            4                             41
  CLUS_2                           19                             44
  CLUS_3                           24                             41
  CLUS_4                            5                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11P15.5) MUTATED        3     25     24
  AMP PEAK 10(11P15.5) WILD-TYPE     47     64     53
D10V2, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                            3                             47
  CLUS_2                           25                             64
  CLUS_3                           24                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(11P15.5) MUTATED       22     72     35      9
  AMP PEAK 10(11P15.5) WILD-TYPE    193    175     97     13
D10V3, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                           22                            193
  CLUS_2                           72                            175
  CLUS_3                           35                             97
  CLUS_4                            9                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11P15.5) MUTATED       25     38     18
  AMP PEAK 10(11P15.5) WILD-TYPE     92     91    126
D10V4, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                           25                             92
  CLUS_2                           38                             91
  CLUS_3                           18                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11P15.5) MUTATED       25     50     33
  AMP PEAK 10(11P15.5) WILD-TYPE     83    147    144
D10V5, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                           25                             83
  CLUS_2                           50                            147
  CLUS_3                           33                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11P15.5) MUTATED       48     38     22
  AMP PEAK 10(11P15.5) WILD-TYPE    180    130     64
D10V6, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                           48                            180
  CLUS_2                           38                            130
  CLUS_3                           22                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(11P15.5) MUTATED       54     11     24     47
  AMP PEAK 10(11P15.5) WILD-TYPE    102    117    107    151
D10V7, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                           54                            102
  CLUS_2                           11                            117
  CLUS_3                           24                            107
  CLUS_4                           47                            151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(11P15.5) MUTATED       30     15      2     10     21     43
  AMP PEAK 10(11P15.5) WILD-TYPE     50     71     62     47     69     95
                                vv
clus                             CLUS_7
  AMP PEAK 10(11P15.5) MUTATED       15
  AMP PEAK 10(11P15.5) WILD-TYPE     83
D10V8, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                           30                             50
  CLUS_2                           15                             71
  CLUS_3                            2                             62
  CLUS_4                           10                             47
  CLUS_5                           21                             69
  CLUS_6                           43                             95
  CLUS_7                           15                             83
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(11P15.5) MUTATED       34     20     20     49
  AMP PEAK 10(11P15.5) WILD-TYPE    119     75     66    156
D10V9, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                           34                            119
  CLUS_2                           20                             75
  CLUS_3                           20                             66
  CLUS_4                           49                            156
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(11P15.5) MUTATED        5     14      1     26      4     40
  AMP PEAK 10(11P15.5) WILD-TYPE     44     60     28     60     73     14
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 10(11P15.5) MUTATED       14      2     17
  AMP PEAK 10(11P15.5) WILD-TYPE     43     30     64
D10V10, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                            5                             44
  CLUS_2                           14                             60
  CLUS_3                            1                             28
  CLUS_4                           26                             60
  CLUS_5                            4                             73
  CLUS_6                           40                             14
  CLUS_7                           14                             43
  CLUS_8                            2                             30
  CLUS_9                           17                             64
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(11P15.5) MUTATED        9     11      6      4
  AMP PEAK 10(11P15.5) WILD-TYPE     26     29     32     18
D10V11, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                            9                             26
  CLUS_2                           11                             29
  CLUS_3                            6                             32
  CLUS_4                            4                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(11P15.5) MUTATED       13      3      7      7
  AMP PEAK 10(11P15.5) WILD-TYPE     50     13     27     15
D10V12, multiclass
        clus
vv       AMP PEAK 10(11P15.5) MUTATED AMP PEAK 10(11P15.5) WILD-TYPE
  CLUS_1                           13                             50
  CLUS_2                            3                             13
  CLUS_3                            7                             27
  CLUS_4                            7                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(12P13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12P13.33) MUTATED       15     14     11     13
  AMP PEAK 11(12P13.33) WILD-TYPE     30     49     54     30
D11V1, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                            15                              30
  CLUS_2                            14                              49
  CLUS_3                            11                              54
  CLUS_4                            13                              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P13.33) MUTATED       15     20     18
  AMP PEAK 11(12P13.33) WILD-TYPE     35     69     59
D11V2, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                            15                              35
  CLUS_2                            20                              69
  CLUS_3                            18                              59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12P13.33) MUTATED       58     52     38      5
  AMP PEAK 11(12P13.33) WILD-TYPE    157    195     94     17
D11V3, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                            58                             157
  CLUS_2                            52                             195
  CLUS_3                            38                              94
  CLUS_4                             5                              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P13.33) MUTATED       31     23     41
  AMP PEAK 11(12P13.33) WILD-TYPE     86    106    103
D11V4, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                            31                              86
  CLUS_2                            23                             106
  CLUS_3                            41                             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P13.33) MUTATED       27     48     42
  AMP PEAK 11(12P13.33) WILD-TYPE     81    149    135
D11V5, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                            27                              81
  CLUS_2                            48                             149
  CLUS_3                            42                             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P13.33) MUTATED       51     43     23
  AMP PEAK 11(12P13.33) WILD-TYPE    177    125     63
D11V6, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                            51                             177
  CLUS_2                            43                             125
  CLUS_3                            23                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12P13.33) MUTATED       33     37     32     51
  AMP PEAK 11(12P13.33) WILD-TYPE    123     91     99    147
D11V7, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                            33                             123
  CLUS_2                            37                              91
  CLUS_3                            32                              99
  CLUS_4                            51                             147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(12P13.33) MUTATED       14     30     15     12     23     28
  AMP PEAK 11(12P13.33) WILD-TYPE     66     56     49     45     67    110
                                 vv
clus                              CLUS_7
  AMP PEAK 11(12P13.33) MUTATED       31
  AMP PEAK 11(12P13.33) WILD-TYPE     67
D11V8, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                            14                              66
  CLUS_2                            30                              56
  CLUS_3                            15                              49
  CLUS_4                            12                              45
  CLUS_5                            23                              67
  CLUS_6                            28                             110
  CLUS_7                            31                              67
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12P13.33) MUTATED       39     22     22     57
  AMP PEAK 11(12P13.33) WILD-TYPE    114     73     64    148
D11V9, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                            39                             114
  CLUS_2                            22                              73
  CLUS_3                            22                              64
  CLUS_4                            57                             148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(12P13.33) MUTATED       11     18     11     30     20      6
  AMP PEAK 11(12P13.33) WILD-TYPE     38     56     18     56     57     48
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 11(12P13.33) MUTATED       15      9     20
  AMP PEAK 11(12P13.33) WILD-TYPE     42     23     61
D11V10, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                            11                              38
  CLUS_2                            18                              56
  CLUS_3                            11                              18
  CLUS_4                            30                              56
  CLUS_5                            20                              57
  CLUS_6                             6                              48
  CLUS_7                            15                              42
  CLUS_8                             9                              23
  CLUS_9                            20                              61
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12P13.33) MUTATED        7     12     14      3
  AMP PEAK 11(12P13.33) WILD-TYPE     28     28     24     19
D11V11, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                             7                              28
  CLUS_2                            12                              28
  CLUS_3                            14                              24
  CLUS_4                             3                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12P13.33) MUTATED       14      7     11      4
  AMP PEAK 11(12P13.33) WILD-TYPE     49      9     23     18
D11V12, multiclass
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  CLUS_1                            14                              49
  CLUS_2                             7                               9
  CLUS_3                            11                              23
  CLUS_4                             4                              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(13Q12.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(13Q12.13) MUTATED       21     49     53     18
  AMP PEAK 12(13Q12.13) WILD-TYPE     24     14     12     25
D12V1, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            21                              24
  CLUS_2                            49                              14
  CLUS_3                            53                              12
  CLUS_4                            18                              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q12.13) MUTATED       16     75     50
  AMP PEAK 12(13Q12.13) WILD-TYPE     34     14     27
D12V2, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            16                              34
  CLUS_2                            75                              14
  CLUS_3                            50                              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(13Q12.13) MUTATED       71    236     82     13
  AMP PEAK 12(13Q12.13) WILD-TYPE    144     11     50      9
D12V3, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            71                             144
  CLUS_2                           236                              11
  CLUS_3                            82                              50
  CLUS_4                            13                               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q12.13) MUTATED       68    114     77
  AMP PEAK 12(13Q12.13) WILD-TYPE     49     15     67
D12V4, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            68                              49
  CLUS_2                           114                              15
  CLUS_3                            77                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q12.13) MUTATED       74    136    101
  AMP PEAK 12(13Q12.13) WILD-TYPE     34     61     76
D12V5, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            74                              34
  CLUS_2                           136                              61
  CLUS_3                           101                              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q12.13) MUTATED      140    107     64
  AMP PEAK 12(13Q12.13) WILD-TYPE     88     61     22
D12V6, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                           140                              88
  CLUS_2                           107                              61
  CLUS_3                            64                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(13Q12.13) MUTATED      125     64     80    130
  AMP PEAK 12(13Q12.13) WILD-TYPE     31     64     51     68
D12V7, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                           125                              31
  CLUS_2                            64                              64
  CLUS_3                            80                              51
  CLUS_4                           130                              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(13Q12.13) MUTATED       60     55     14     45     75    110
  AMP PEAK 12(13Q12.13) WILD-TYPE     20     31     50     12     15     28
                                 vv
clus                              CLUS_7
  AMP PEAK 12(13Q12.13) MUTATED       40
  AMP PEAK 12(13Q12.13) WILD-TYPE     58
D12V8, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            60                              20
  CLUS_2                            55                              31
  CLUS_3                            14                              50
  CLUS_4                            45                              12
  CLUS_5                            75                              15
  CLUS_6                           110                              28
  CLUS_7                            40                              58
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(13Q12.13) MUTATED       99     64     74    116
  AMP PEAK 12(13Q12.13) WILD-TYPE     54     31     12     89
D12V9, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            99                              54
  CLUS_2                            64                              31
  CLUS_3                            74                              12
  CLUS_4                           116                              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(13Q12.13) MUTATED       31     48     18     64     28     32
  AMP PEAK 12(13Q12.13) WILD-TYPE     18     26     11     22     49     22
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 12(13Q12.13) MUTATED       47     20     65
  AMP PEAK 12(13Q12.13) WILD-TYPE     10     12     16
D12V10, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            31                              18
  CLUS_2                            48                              26
  CLUS_3                            18                              11
  CLUS_4                            64                              22
  CLUS_5                            28                              49
  CLUS_6                            32                              22
  CLUS_7                            47                              10
  CLUS_8                            20                              12
  CLUS_9                            65                              16
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(13Q12.13) MUTATED       23     33     36     10
  AMP PEAK 12(13Q12.13) WILD-TYPE     12      7      2     12
D12V11, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            23                              12
  CLUS_2                            33                               7
  CLUS_3                            36                               2
  CLUS_4                            10                              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(13Q12.13) MUTATED       43     15     28     16
  AMP PEAK 12(13Q12.13) WILD-TYPE     20      1      6      6
D12V12, multiclass
        clus
vv       AMP PEAK 12(13Q12.13) MUTATED AMP PEAK 12(13Q12.13) WILD-TYPE
  CLUS_1                            43                              20
  CLUS_2                            15                               1
  CLUS_3                            28                               6
  CLUS_4                            16                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(13Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(13Q12.2) MUTATED       20     48     51     19
  AMP PEAK 13(13Q12.2) WILD-TYPE     25     15     14     24
D13V1, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                           20                             25
  CLUS_2                           48                             15
  CLUS_3                           51                             14
  CLUS_4                           19                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q12.2) MUTATED       16     74     48
  AMP PEAK 13(13Q12.2) WILD-TYPE     34     15     29
D13V2, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                           16                             34
  CLUS_2                           74                             15
  CLUS_3                           48                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(13Q12.2) MUTATED       68    234     81     13
  AMP PEAK 13(13Q12.2) WILD-TYPE    147     13     51      9
D13V3, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                           68                            147
  CLUS_2                          234                             13
  CLUS_3                           81                             51
  CLUS_4                           13                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q12.2) MUTATED       68    114     74
  AMP PEAK 13(13Q12.2) WILD-TYPE     49     15     70
D13V4, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                           68                             49
  CLUS_2                          114                             15
  CLUS_3                           74                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q12.2) MUTATED       73    133    101
  AMP PEAK 13(13Q12.2) WILD-TYPE     35     64     76
D13V5, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                           73                             35
  CLUS_2                          133                             64
  CLUS_3                          101                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q12.2) MUTATED      139    106     62
  AMP PEAK 13(13Q12.2) WILD-TYPE     89     62     24
D13V6, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                          139                             89
  CLUS_2                          106                             62
  CLUS_3                           62                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(13Q12.2) MUTATED      124     63     79    127
  AMP PEAK 13(13Q12.2) WILD-TYPE     32     65     52     71
D13V7, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                          124                             32
  CLUS_2                           63                             65
  CLUS_3                           79                             52
  CLUS_4                          127                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(13Q12.2) MUTATED       59     54     13     45     75    109
  AMP PEAK 13(13Q12.2) WILD-TYPE     21     32     51     12     15     29
                                vv
clus                             CLUS_7
  AMP PEAK 13(13Q12.2) MUTATED       38
  AMP PEAK 13(13Q12.2) WILD-TYPE     60
D13V8, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                           59                             21
  CLUS_2                           54                             32
  CLUS_3                           13                             51
  CLUS_4                           45                             12
  CLUS_5                           75                             15
  CLUS_6                          109                             29
  CLUS_7                           38                             60
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(13Q12.2) MUTATED       96     64     75    112
  AMP PEAK 13(13Q12.2) WILD-TYPE     57     31     11     93
D13V9, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                           96                             57
  CLUS_2                           64                             31
  CLUS_3                           75                             11
  CLUS_4                          112                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(13Q12.2) MUTATED       31     48     18     60     27     31
  AMP PEAK 13(13Q12.2) WILD-TYPE     18     26     11     26     50     23
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 13(13Q12.2) MUTATED       47     20     65
  AMP PEAK 13(13Q12.2) WILD-TYPE     10     12     16
D13V10, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                           31                             18
  CLUS_2                           48                             26
  CLUS_3                           18                             11
  CLUS_4                           60                             26
  CLUS_5                           27                             50
  CLUS_6                           31                             23
  CLUS_7                           47                             10
  CLUS_8                           20                             12
  CLUS_9                           65                             16
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(13Q12.2) MUTATED       22     33     35     10
  AMP PEAK 13(13Q12.2) WILD-TYPE     13      7      3     12
D13V11, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                           22                             13
  CLUS_2                           33                              7
  CLUS_3                           35                              3
  CLUS_4                           10                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(13Q12.2) MUTATED       42     15     28     15
  AMP PEAK 13(13Q12.2) WILD-TYPE     21      1      6      7
D13V12, multiclass
        clus
vv       AMP PEAK 13(13Q12.2) MUTATED AMP PEAK 13(13Q12.2) WILD-TYPE
  CLUS_1                           42                             21
  CLUS_2                           15                              1
  CLUS_3                           28                              6
  CLUS_4                           15                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(13Q22.1) MUTATED       19     49     50     19
  AMP PEAK 14(13Q22.1) WILD-TYPE     26     14     15     24
D14V1, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                           19                             26
  CLUS_2                           49                             14
  CLUS_3                           50                             15
  CLUS_4                           19                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q22.1) MUTATED       14     73     50
  AMP PEAK 14(13Q22.1) WILD-TYPE     36     16     27
D14V2, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                           14                             36
  CLUS_2                           73                             16
  CLUS_3                           50                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(13Q22.1) MUTATED       73    231     80     13
  AMP PEAK 14(13Q22.1) WILD-TYPE    142     16     52      9
D14V3, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                           73                            142
  CLUS_2                          231                             16
  CLUS_3                           80                             52
  CLUS_4                           13                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q22.1) MUTATED       69    109     79
  AMP PEAK 14(13Q22.1) WILD-TYPE     48     20     65
D14V4, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                           69                             48
  CLUS_2                          109                             20
  CLUS_3                           79                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q22.1) MUTATED       70    132    104
  AMP PEAK 14(13Q22.1) WILD-TYPE     38     65     73
D14V5, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                           70                             38
  CLUS_2                          132                             65
  CLUS_3                          104                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q22.1) MUTATED      140    105     61
  AMP PEAK 14(13Q22.1) WILD-TYPE     88     63     25
D14V6, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                          140                             88
  CLUS_2                          105                             63
  CLUS_3                           61                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(13Q22.1) MUTATED      122     63     81    128
  AMP PEAK 14(13Q22.1) WILD-TYPE     34     65     50     70
D14V7, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                          122                             34
  CLUS_2                           63                             65
  CLUS_3                           81                             50
  CLUS_4                          128                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(13Q22.1) MUTATED       59     52     18     44     73    111
  AMP PEAK 14(13Q22.1) WILD-TYPE     21     34     46     13     17     27
                                vv
clus                             CLUS_7
  AMP PEAK 14(13Q22.1) MUTATED       37
  AMP PEAK 14(13Q22.1) WILD-TYPE     61
D14V8, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                           59                             21
  CLUS_2                           52                             34
  CLUS_3                           18                             46
  CLUS_4                           44                             13
  CLUS_5                           73                             17
  CLUS_6                          111                             27
  CLUS_7                           37                             61
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(13Q22.1) MUTATED       97     65     76    113
  AMP PEAK 14(13Q22.1) WILD-TYPE     56     30     10     92
D14V9, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                           97                             56
  CLUS_2                           65                             30
  CLUS_3                           76                             10
  CLUS_4                          113                             92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(13Q22.1) MUTATED       31     49     18     59     28     35
  AMP PEAK 14(13Q22.1) WILD-TYPE     18     25     11     27     49     19
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 14(13Q22.1) MUTATED       48     20     63
  AMP PEAK 14(13Q22.1) WILD-TYPE      9     12     18
D14V10, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                           31                             18
  CLUS_2                           49                             25
  CLUS_3                           18                             11
  CLUS_4                           59                             27
  CLUS_5                           28                             49
  CLUS_6                           35                             19
  CLUS_7                           48                              9
  CLUS_8                           20                             12
  CLUS_9                           63                             18
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(13Q22.1) MUTATED       25     32     34     11
  AMP PEAK 14(13Q22.1) WILD-TYPE     10      8      4     11
D14V11, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                           25                             10
  CLUS_2                           32                              8
  CLUS_3                           34                              4
  CLUS_4                           11                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(13Q22.1) MUTATED       44     13     29     16
  AMP PEAK 14(13Q22.1) WILD-TYPE     19      3      5      6
D14V12, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                           44                             19
  CLUS_2                           13                              3
  CLUS_3                           29                              5
  CLUS_4                           16                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(15Q26.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(15Q26.1) MUTATED        3      6      3      3
  AMP PEAK 15(15Q26.1) WILD-TYPE     42     57     62     40
D15V1, multiclass
        clus
vv       AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE
  CLUS_1                            3                             42
  CLUS_2                            6                             57
  CLUS_3                            3                             62
  CLUS_4                            3                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(15Q26.1) MUTATED        5      7      3
  AMP PEAK 15(15Q26.1) WILD-TYPE     45     82     74
D15V2, multiclass
        clus
vv       AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE
  CLUS_1                            5                             45
  CLUS_2                            7                             82
  CLUS_3                            3                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(15Q26.1) MUTATED        9     16     14      3
  AMP PEAK 15(15Q26.1) WILD-TYPE    206    231    118     19
D15V3, multiclass
        clus
vv       AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE
  CLUS_1                            9                            206
  CLUS_2                           16                            231
  CLUS_3                           14                            118
  CLUS_4                            3                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(15Q26.1) MUTATED       10      9      8
  AMP PEAK 15(15Q26.1) WILD-TYPE    107    120    136
D15V4, multiclass
        clus
vv       AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE
  CLUS_1                           10                            107
  CLUS_2                            9                            120
  CLUS_3                            8                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(15Q26.1) MUTATED       13     10     14
  AMP PEAK 15(15Q26.1) WILD-TYPE     95    187    163
D15V5, multiclass
        clus
vv       AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE
  CLUS_1                           13                             95
  CLUS_2                           10                            187
  CLUS_3                           14                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(15Q26.1) MUTATED       19     11      7
  AMP PEAK 15(15Q26.1) WILD-TYPE    209    157     79
D15V6, multiclass
        clus
vv       AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE
  CLUS_1                           19                            209
  CLUS_2                           11                            157
  CLUS_3                            7                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(15Q26.1) MUTATED       11      6     12     13
  AMP PEAK 15(15Q26.1) WILD-TYPE    145    122    119    185
D15V7, multiclass
        clus
vv       AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE
  CLUS_1                           11                            145
  CLUS_2                            6                            122
  CLUS_3                           12                            119
  CLUS_4                           13                            185
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(15Q26.1) MUTATED        8      5      5      2      5     11
  AMP PEAK 15(15Q26.1) WILD-TYPE     72     81     59     55     85    127
                                vv
clus                             CLUS_7
  AMP PEAK 15(15Q26.1) MUTATED        6
  AMP PEAK 15(15Q26.1) WILD-TYPE     92
D15V8, multiclass
        clus
vv       AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE
  CLUS_1                            8                             72
  CLUS_2                            5                             81
  CLUS_3                            5                             59
  CLUS_4                            2                             55
  CLUS_5                            5                             85
  CLUS_6                           11                            127
  CLUS_7                            6                             92
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(15Q26.1) MUTATED       12      3      8     15
  AMP PEAK 15(15Q26.1) WILD-TYPE    141     92     78    190
D15V9, multiclass
        clus
vv       AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE
  CLUS_1                           12                            141
  CLUS_2                            3                             92
  CLUS_3                            8                             78
  CLUS_4                           15                            190
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(15Q26.1) MUTATED        4      4      3      6      6      2
  AMP PEAK 15(15Q26.1) WILD-TYPE     45     70     26     80     71     52
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 15(15Q26.1) MUTATED        5      3      5
  AMP PEAK 15(15Q26.1) WILD-TYPE     52     29     76
D15V10, multiclass
        clus
vv       AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE
  CLUS_1                            4                             45
  CLUS_2                            4                             70
  CLUS_3                            3                             26
  CLUS_4                            6                             80
  CLUS_5                            6                             71
  CLUS_6                            2                             52
  CLUS_7                            5                             52
  CLUS_8                            3                             29
  CLUS_9                            5                             76
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(15Q26.1) MUTATED        2      2      3      1
  AMP PEAK 15(15Q26.1) WILD-TYPE     33     38     35     21
D15V11, multiclass
        clus
vv       AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE
  CLUS_1                            2                             33
  CLUS_2                            2                             38
  CLUS_3                            3                             35
  CLUS_4                            1                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(15Q26.1) MUTATED        4      0      3      1
  AMP PEAK 15(15Q26.1) WILD-TYPE     59     16     31     21
D15V12, multiclass
        clus
vv       AMP PEAK 15(15Q26.1) MUTATED AMP PEAK 15(15Q26.1) WILD-TYPE
  CLUS_1                            4                             59
  CLUS_2                            0                             16
  CLUS_3                            3                             31
  CLUS_4                            1                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(16P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(16P11.2) MUTATED       10     24     23      7
  AMP PEAK 16(16P11.2) WILD-TYPE     35     39     42     36
D16V1, multiclass
        clus
vv       AMP PEAK 16(16P11.2) MUTATED AMP PEAK 16(16P11.2) WILD-TYPE
  CLUS_1                           10                             35
  CLUS_2                           24                             39
  CLUS_3                           23                             42
  CLUS_4                            7                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(16P11.2) MUTATED        8     40     16
  AMP PEAK 16(16P11.2) WILD-TYPE     42     49     61
D16V2, multiclass
        clus
vv       AMP PEAK 16(16P11.2) MUTATED AMP PEAK 16(16P11.2) WILD-TYPE
  CLUS_1                            8                             42
  CLUS_2                           40                             49
  CLUS_3                           16                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(16P11.2) MUTATED        9    116     38     10
  AMP PEAK 16(16P11.2) WILD-TYPE    206    131     94     12
D16V3, multiclass
        clus
vv       AMP PEAK 16(16P11.2) MUTATED AMP PEAK 16(16P11.2) WILD-TYPE
  CLUS_1                            9                            206
  CLUS_2                          116                            131
  CLUS_3                           38                             94
  CLUS_4                           10                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(16P11.2) MUTATED       33     46     29
  AMP PEAK 16(16P11.2) WILD-TYPE     84     83    115
D16V4, multiclass
        clus
vv       AMP PEAK 16(16P11.2) MUTATED AMP PEAK 16(16P11.2) WILD-TYPE
  CLUS_1                           33                             84
  CLUS_2                           46                             83
  CLUS_3                           29                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(16P11.2) MUTATED       41     48     41
  AMP PEAK 16(16P11.2) WILD-TYPE     67    149    136
D16V5, multiclass
        clus
vv       AMP PEAK 16(16P11.2) MUTATED AMP PEAK 16(16P11.2) WILD-TYPE
  CLUS_1                           41                             67
  CLUS_2                           48                            149
  CLUS_3                           41                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(16P11.2) MUTATED       62     40     28
  AMP PEAK 16(16P11.2) WILD-TYPE    166    128     58
D16V6, multiclass
        clus
vv       AMP PEAK 16(16P11.2) MUTATED AMP PEAK 16(16P11.2) WILD-TYPE
  CLUS_1                           62                            166
  CLUS_2                           40                            128
  CLUS_3                           28                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(16P11.2) MUTATED       60     18     32     62
  AMP PEAK 16(16P11.2) WILD-TYPE     96    110     99    136
D16V7, multiclass
        clus
vv       AMP PEAK 16(16P11.2) MUTATED AMP PEAK 16(16P11.2) WILD-TYPE
  CLUS_1                           60                             96
  CLUS_2                           18                            110
  CLUS_3                           32                             99
  CLUS_4                           62                            136
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(16P11.2) MUTATED       20     24      6     15     35     54
  AMP PEAK 16(16P11.2) WILD-TYPE     60     62     58     42     55     84
                                vv
clus                             CLUS_7
  AMP PEAK 16(16P11.2) MUTATED       18
  AMP PEAK 16(16P11.2) WILD-TYPE     80
D16V8, multiclass
        clus
vv       AMP PEAK 16(16P11.2) MUTATED AMP PEAK 16(16P11.2) WILD-TYPE
  CLUS_1                           20                             60
  CLUS_2                           24                             62
  CLUS_3                            6                             58
  CLUS_4                           15                             42
  CLUS_5                           35                             55
  CLUS_6                           54                             84
  CLUS_7                           18                             80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(16P11.2) MUTATED       42     31     26     56
  AMP PEAK 16(16P11.2) WILD-TYPE    111     64     60    149
D16V9, multiclass
        clus
vv       AMP PEAK 16(16P11.2) MUTATED AMP PEAK 16(16P11.2) WILD-TYPE
  CLUS_1                           42                            111
  CLUS_2                           31                             64
  CLUS_3                           26                             60
  CLUS_4                           56                            149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(16P11.2) MUTATED       14     23      5     27      9     13
  AMP PEAK 16(16P11.2) WILD-TYPE     35     51     24     59     68     41
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 16(16P11.2) MUTATED       19     12     33
  AMP PEAK 16(16P11.2) WILD-TYPE     38     20     48
D16V10, multiclass
        clus
vv       AMP PEAK 16(16P11.2) MUTATED AMP PEAK 16(16P11.2) WILD-TYPE
  CLUS_1                           14                             35
  CLUS_2                           23                             51
  CLUS_3                            5                             24
  CLUS_4                           27                             59
  CLUS_5                            9                             68
  CLUS_6                           13                             41
  CLUS_7                           19                             38
  CLUS_8                           12                             20
  CLUS_9                           33                             48
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(16P11.2) MUTATED       15     17     11      2
  AMP PEAK 16(16P11.2) WILD-TYPE     20     23     27     20
D16V11, multiclass
        clus
vv       AMP PEAK 16(16P11.2) MUTATED AMP PEAK 16(16P11.2) WILD-TYPE
  CLUS_1                           15                             20
  CLUS_2                           17                             23
  CLUS_3                           11                             27
  CLUS_4                            2                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(16P11.2) MUTATED       19      9      9      8
  AMP PEAK 16(16P11.2) WILD-TYPE     44      7     25     14
D16V12, multiclass
        clus
vv       AMP PEAK 16(16P11.2) MUTATED AMP PEAK 16(16P11.2) WILD-TYPE
  CLUS_1                           19                             44
  CLUS_2                            9                              7
  CLUS_3                            9                             25
  CLUS_4                            8                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q12) MUTATED        8     24     18      7
  AMP PEAK 17(17Q12) WILD-TYPE     37     39     47     36
D17V1, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                          8                           37
  CLUS_2                         24                           39
  CLUS_3                         18                           47
  CLUS_4                          7                           36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q12) MUTATED        6     32     19
  AMP PEAK 17(17Q12) WILD-TYPE     44     57     58
D17V2, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                          6                           44
  CLUS_2                         32                           57
  CLUS_3                         19                           58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q12) MUTATED       20     84     49      7
  AMP PEAK 17(17Q12) WILD-TYPE    195    163     83     15
D17V3, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                         20                          195
  CLUS_2                         84                          163
  CLUS_3                         49                           83
  CLUS_4                          7                           15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q12) MUTATED       28     46     28
  AMP PEAK 17(17Q12) WILD-TYPE     89     83    116
D17V4, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                         28                           89
  CLUS_2                         46                           83
  CLUS_3                         28                          116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q12) MUTATED       32     46     41
  AMP PEAK 17(17Q12) WILD-TYPE     76    151    136
D17V5, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                         32                           76
  CLUS_2                         46                          151
  CLUS_3                         41                          136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q12) MUTATED       59     32     28
  AMP PEAK 17(17Q12) WILD-TYPE    169    136     58
D17V6, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                         59                          169
  CLUS_2                         32                          136
  CLUS_3                         28                           58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q12) MUTATED       63     22     24     50
  AMP PEAK 17(17Q12) WILD-TYPE     93    106    107    148
D17V7, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                         63                           93
  CLUS_2                         22                          106
  CLUS_3                         24                          107
  CLUS_4                         50                          148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 17(17Q12) MUTATED       30     20      5     13     28     50     13
  AMP PEAK 17(17Q12) WILD-TYPE     50     66     59     44     62     88     85
D17V8, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                         30                           50
  CLUS_2                         20                           66
  CLUS_3                          5                           59
  CLUS_4                         13                           44
  CLUS_5                         28                           62
  CLUS_6                         50                           88
  CLUS_7                         13                           85
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q12) MUTATED       37     22     26     53
  AMP PEAK 17(17Q12) WILD-TYPE    116     73     60    152
D17V9, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                         37                          116
  CLUS_2                         22                           73
  CLUS_3                         26                           60
  CLUS_4                         53                          152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 17(17Q12) MUTATED       15     17      5     32      8     16     15
  AMP PEAK 17(17Q12) WILD-TYPE     34     57     24     54     69     38     42
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 17(17Q12) MUTATED        8     22
  AMP PEAK 17(17Q12) WILD-TYPE     24     59
D17V10, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                         15                           34
  CLUS_2                         17                           57
  CLUS_3                          5                           24
  CLUS_4                         32                           54
  CLUS_5                          8                           69
  CLUS_6                         16                           38
  CLUS_7                         15                           42
  CLUS_8                          8                           24
  CLUS_9                         22                           59
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q12) MUTATED       11     11     11      1
  AMP PEAK 17(17Q12) WILD-TYPE     24     29     27     21
D17V11, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                         11                           24
  CLUS_2                         11                           29
  CLUS_3                         11                           27
  CLUS_4                          1                           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q12) MUTATED       15      5      7      7
  AMP PEAK 17(17Q12) WILD-TYPE     48     11     27     15
D17V12, multiclass
        clus
vv       AMP PEAK 17(17Q12) MUTATED AMP PEAK 17(17Q12) WILD-TYPE
  CLUS_1                         15                           48
  CLUS_2                          5                           11
  CLUS_3                          7                           27
  CLUS_4                          7                           15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(17Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17Q24.1) MUTATED        5     20     19      7
  AMP PEAK 18(17Q24.1) WILD-TYPE     40     43     46     36
D18V1, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                            5                             40
  CLUS_2                           20                             43
  CLUS_3                           19                             46
  CLUS_4                            7                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q24.1) MUTATED        5     28     18
  AMP PEAK 18(17Q24.1) WILD-TYPE     45     61     59
D18V2, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                            5                             45
  CLUS_2                           28                             61
  CLUS_3                           18                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17Q24.1) MUTATED       19     81     42      2
  AMP PEAK 18(17Q24.1) WILD-TYPE    196    166     90     20
D18V3, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                           19                            196
  CLUS_2                           81                            166
  CLUS_3                           42                             90
  CLUS_4                            2                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q24.1) MUTATED       21     47     25
  AMP PEAK 18(17Q24.1) WILD-TYPE     96     82    119
D18V4, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                           21                             96
  CLUS_2                           47                             82
  CLUS_3                           25                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q24.1) MUTATED       29     44     37
  AMP PEAK 18(17Q24.1) WILD-TYPE     79    153    140
D18V5, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                           29                             79
  CLUS_2                           44                            153
  CLUS_3                           37                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q24.1) MUTATED       50     33     27
  AMP PEAK 18(17Q24.1) WILD-TYPE    178    135     59
D18V6, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                           50                            178
  CLUS_2                           33                            135
  CLUS_3                           27                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17Q24.1) MUTATED       59     21     19     44
  AMP PEAK 18(17Q24.1) WILD-TYPE     97    107    112    154
D18V7, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                           59                             97
  CLUS_2                           21                            107
  CLUS_3                           19                            112
  CLUS_4                           44                            154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(17Q24.1) MUTATED       29     20      4     11     24     43
  AMP PEAK 18(17Q24.1) WILD-TYPE     51     66     60     46     66     95
                                vv
clus                             CLUS_7
  AMP PEAK 18(17Q24.1) MUTATED       12
  AMP PEAK 18(17Q24.1) WILD-TYPE     86
D18V8, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                           29                             51
  CLUS_2                           20                             66
  CLUS_3                            4                             60
  CLUS_4                           11                             46
  CLUS_5                           24                             66
  CLUS_6                           43                             95
  CLUS_7                           12                             86
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17Q24.1) MUTATED       38     17     23     44
  AMP PEAK 18(17Q24.1) WILD-TYPE    115     78     63    161
D18V9, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                           38                            115
  CLUS_2                           17                             78
  CLUS_3                           23                             63
  CLUS_4                           44                            161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(17Q24.1) MUTATED       14     13      3     29      7     14
  AMP PEAK 18(17Q24.1) WILD-TYPE     35     61     26     57     70     40
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 18(17Q24.1) MUTATED       14      6     22
  AMP PEAK 18(17Q24.1) WILD-TYPE     43     26     59
D18V10, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                           14                             35
  CLUS_2                           13                             61
  CLUS_3                            3                             26
  CLUS_4                           29                             57
  CLUS_5                            7                             70
  CLUS_6                           14                             40
  CLUS_7                           14                             43
  CLUS_8                            6                             26
  CLUS_9                           22                             59
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17Q24.1) MUTATED        9      9      9      1
  AMP PEAK 18(17Q24.1) WILD-TYPE     26     31     29     21
D18V11, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                            9                             26
  CLUS_2                            9                             31
  CLUS_3                            9                             29
  CLUS_4                            1                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17Q24.1) MUTATED       12      5      5      6
  AMP PEAK 18(17Q24.1) WILD-TYPE     51     11     29     16
D18V12, multiclass
        clus
vv       AMP PEAK 18(17Q24.1) MUTATED AMP PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                           12                             51
  CLUS_2                            5                             11
  CLUS_3                            5                             29
  CLUS_4                            6                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19Q12) MUTATED        6     22      9      8
  AMP PEAK 19(19Q12) WILD-TYPE     39     41     56     35
D19V1, multiclass
        clus
vv       AMP PEAK 19(19Q12) MUTATED AMP PEAK 19(19Q12) WILD-TYPE
  CLUS_1                          6                           39
  CLUS_2                         22                           41
  CLUS_3                          9                           56
  CLUS_4                          8                           35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(19Q12) MUTATED        4     28     13
  AMP PEAK 19(19Q12) WILD-TYPE     46     61     64
D19V2, multiclass
        clus
vv       AMP PEAK 19(19Q12) MUTATED AMP PEAK 19(19Q12) WILD-TYPE
  CLUS_1                          4                           46
  CLUS_2                         28                           61
  CLUS_3                         13                           64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19Q12) MUTATED       21     81     29      8
  AMP PEAK 19(19Q12) WILD-TYPE    194    166    103     14
D19V3, multiclass
        clus
vv       AMP PEAK 19(19Q12) MUTATED AMP PEAK 19(19Q12) WILD-TYPE
  CLUS_1                         21                          194
  CLUS_2                         81                          166
  CLUS_3                         29                          103
  CLUS_4                          8                           14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(19Q12) MUTATED       26     36     33
  AMP PEAK 19(19Q12) WILD-TYPE     91     93    111
D19V4, multiclass
        clus
vv       AMP PEAK 19(19Q12) MUTATED AMP PEAK 19(19Q12) WILD-TYPE
  CLUS_1                         26                           91
  CLUS_2                         36                           93
  CLUS_3                         33                          111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(19Q12) MUTATED       32     48     28
  AMP PEAK 19(19Q12) WILD-TYPE     76    149    149
D19V5, multiclass
        clus
vv       AMP PEAK 19(19Q12) MUTATED AMP PEAK 19(19Q12) WILD-TYPE
  CLUS_1                         32                           76
  CLUS_2                         48                          149
  CLUS_3                         28                          149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(19Q12) MUTATED       49     35     24
  AMP PEAK 19(19Q12) WILD-TYPE    179    133     62
D19V6, multiclass
        clus
vv       AMP PEAK 19(19Q12) MUTATED AMP PEAK 19(19Q12) WILD-TYPE
  CLUS_1                         49                          179
  CLUS_2                         35                          133
  CLUS_3                         24                           62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19Q12) MUTATED       48     27     27     36
  AMP PEAK 19(19Q12) WILD-TYPE    108    101    104    162
D19V7, multiclass
        clus
vv       AMP PEAK 19(19Q12) MUTATED AMP PEAK 19(19Q12) WILD-TYPE
  CLUS_1                         48                          108
  CLUS_2                         27                          101
  CLUS_3                         27                          104
  CLUS_4                         36                          162
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 19(19Q12) MUTATED       17     24      6     16     27     34     14
  AMP PEAK 19(19Q12) WILD-TYPE     63     62     58     41     63    104     84
D19V8, multiclass
        clus
vv       AMP PEAK 19(19Q12) MUTATED AMP PEAK 19(19Q12) WILD-TYPE
  CLUS_1                         17                           63
  CLUS_2                         24                           62
  CLUS_3                          6                           58
  CLUS_4                         16                           41
  CLUS_5                         27                           63
  CLUS_6                         34                          104
  CLUS_7                         14                           84
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19Q12) MUTATED       36     27     20     34
  AMP PEAK 19(19Q12) WILD-TYPE    117     68     66    171
D19V9, multiclass
        clus
vv       AMP PEAK 19(19Q12) MUTATED AMP PEAK 19(19Q12) WILD-TYPE
  CLUS_1                         36                          117
  CLUS_2                         27                           68
  CLUS_3                         20                           66
  CLUS_4                         34                          171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 19(19Q12) MUTATED       15     17      6     17      7     11     11
  AMP PEAK 19(19Q12) WILD-TYPE     34     57     23     69     70     43     46
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 19(19Q12) MUTATED       13     20
  AMP PEAK 19(19Q12) WILD-TYPE     19     61
D19V10, multiclass
        clus
vv       AMP PEAK 19(19Q12) MUTATED AMP PEAK 19(19Q12) WILD-TYPE
  CLUS_1                         15                           34
  CLUS_2                         17                           57
  CLUS_3                          6                           23
  CLUS_4                         17                           69
  CLUS_5                          7                           70
  CLUS_6                         11                           43
  CLUS_7                         11                           46
  CLUS_8                         13                           19
  CLUS_9                         20                           61
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19Q12) MUTATED        8     11      9      1
  AMP PEAK 19(19Q12) WILD-TYPE     27     29     29     21
D19V11, multiclass
        clus
vv       AMP PEAK 19(19Q12) MUTATED AMP PEAK 19(19Q12) WILD-TYPE
  CLUS_1                          8                           27
  CLUS_2                         11                           29
  CLUS_3                          9                           29
  CLUS_4                          1                           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19Q12) MUTATED       13      5      7      4
  AMP PEAK 19(19Q12) WILD-TYPE     50     11     27     18
D19V12, multiclass
        clus
vv       AMP PEAK 19(19Q12) MUTATED AMP PEAK 19(19Q12) WILD-TYPE
  CLUS_1                         13                           50
  CLUS_2                          5                           11
  CLUS_3                          7                           27
  CLUS_4                          4                           18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(20P12.1) MUTATED       14     32     39     17
  AMP PEAK 20(20P12.1) WILD-TYPE     31     31     26     26
D20V1, multiclass
        clus
vv       AMP PEAK 20(20P12.1) MUTATED AMP PEAK 20(20P12.1) WILD-TYPE
  CLUS_1                           14                             31
  CLUS_2                           32                             31
  CLUS_3                           39                             26
  CLUS_4                           17                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(20P12.1) MUTATED       13     47     42
  AMP PEAK 20(20P12.1) WILD-TYPE     37     42     35
D20V2, multiclass
        clus
vv       AMP PEAK 20(20P12.1) MUTATED AMP PEAK 20(20P12.1) WILD-TYPE
  CLUS_1                           13                             37
  CLUS_2                           47                             42
  CLUS_3                           42                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(20P12.1) MUTATED       70    125     62     21
  AMP PEAK 20(20P12.1) WILD-TYPE    145    122     70      1
D20V3, multiclass
        clus
vv       AMP PEAK 20(20P12.1) MUTATED AMP PEAK 20(20P12.1) WILD-TYPE
  CLUS_1                           70                            145
  CLUS_2                          125                            122
  CLUS_3                           62                             70
  CLUS_4                           21                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(20P12.1) MUTATED       52     61     58
  AMP PEAK 20(20P12.1) WILD-TYPE     65     68     86
D20V4, multiclass
        clus
vv       AMP PEAK 20(20P12.1) MUTATED AMP PEAK 20(20P12.1) WILD-TYPE
  CLUS_1                           52                             65
  CLUS_2                           61                             68
  CLUS_3                           58                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(20P12.1) MUTATED       62     82     64
  AMP PEAK 20(20P12.1) WILD-TYPE     46    115    113
D20V5, multiclass
        clus
vv       AMP PEAK 20(20P12.1) MUTATED AMP PEAK 20(20P12.1) WILD-TYPE
  CLUS_1                           62                             46
  CLUS_2                           82                            115
  CLUS_3                           64                            113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(20P12.1) MUTATED      104     66     38
  AMP PEAK 20(20P12.1) WILD-TYPE    124    102     48
D20V6, multiclass
        clus
vv       AMP PEAK 20(20P12.1) MUTATED AMP PEAK 20(20P12.1) WILD-TYPE
  CLUS_1                          104                            124
  CLUS_2                           66                            102
  CLUS_3                           38                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(20P12.1) MUTATED       77     50     53     96
  AMP PEAK 20(20P12.1) WILD-TYPE     79     78     78    102
D20V7, multiclass
        clus
vv       AMP PEAK 20(20P12.1) MUTATED AMP PEAK 20(20P12.1) WILD-TYPE
  CLUS_1                           77                             79
  CLUS_2                           50                             78
  CLUS_3                           53                             78
  CLUS_4                           96                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(20P12.1) MUTATED       39     38     15     33     40     76
  AMP PEAK 20(20P12.1) WILD-TYPE     41     48     49     24     50     62
                                vv
clus                             CLUS_7
  AMP PEAK 20(20P12.1) MUTATED       35
  AMP PEAK 20(20P12.1) WILD-TYPE     63
D20V8, multiclass
        clus
vv       AMP PEAK 20(20P12.1) MUTATED AMP PEAK 20(20P12.1) WILD-TYPE
  CLUS_1                           39                             41
  CLUS_2                           38                             48
  CLUS_3                           15                             49
  CLUS_4                           33                             24
  CLUS_5                           40                             50
  CLUS_6                           76                             62
  CLUS_7                           35                             63
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(20P12.1) MUTATED       63     50     43     87
  AMP PEAK 20(20P12.1) WILD-TYPE     90     45     43    118
D20V9, multiclass
        clus
vv       AMP PEAK 20(20P12.1) MUTATED AMP PEAK 20(20P12.1) WILD-TYPE
  CLUS_1                           63                             90
  CLUS_2                           50                             45
  CLUS_3                           43                             43
  CLUS_4                           87                            118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(20P12.1) MUTATED       20     32     13     39     15     28
  AMP PEAK 20(20P12.1) WILD-TYPE     29     42     16     47     62     26
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 20(20P12.1) MUTATED       30     14     52
  AMP PEAK 20(20P12.1) WILD-TYPE     27     18     29
D20V10, multiclass
        clus
vv       AMP PEAK 20(20P12.1) MUTATED AMP PEAK 20(20P12.1) WILD-TYPE
  CLUS_1                           20                             29
  CLUS_2                           32                             42
  CLUS_3                           13                             16
  CLUS_4                           39                             47
  CLUS_5                           15                             62
  CLUS_6                           28                             26
  CLUS_7                           30                             27
  CLUS_8                           14                             18
  CLUS_9                           52                             29
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(20P12.1) MUTATED       18     24     17      5
  AMP PEAK 20(20P12.1) WILD-TYPE     17     16     21     17
D20V11, multiclass
        clus
vv       AMP PEAK 20(20P12.1) MUTATED AMP PEAK 20(20P12.1) WILD-TYPE
  CLUS_1                           18                             17
  CLUS_2                           24                             16
  CLUS_3                           17                             21
  CLUS_4                            5                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(20P12.1) MUTATED       29      9     14     12
  AMP PEAK 20(20P12.1) WILD-TYPE     34      7     20     10
D20V12, multiclass
        clus
vv       AMP PEAK 20(20P12.1) MUTATED AMP PEAK 20(20P12.1) WILD-TYPE
  CLUS_1                           29                             34
  CLUS_2                            9                              7
  CLUS_3                           14                             20
  CLUS_4                           12                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(20P11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20P11.21) MUTATED       16     44     46     19
  AMP PEAK 21(20P11.21) WILD-TYPE     29     19     19     24
D21V1, multiclass
        clus
vv       AMP PEAK 21(20P11.21) MUTATED AMP PEAK 21(20P11.21) WILD-TYPE
  CLUS_1                            16                              29
  CLUS_2                            44                              19
  CLUS_3                            46                              19
  CLUS_4                            19                              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20P11.21) MUTATED       14     62     49
  AMP PEAK 21(20P11.21) WILD-TYPE     36     27     28
D21V2, multiclass
        clus
vv       AMP PEAK 21(20P11.21) MUTATED AMP PEAK 21(20P11.21) WILD-TYPE
  CLUS_1                            14                              36
  CLUS_2                            62                              27
  CLUS_3                            49                              28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20P11.21) MUTATED       74    185     82     22
  AMP PEAK 21(20P11.21) WILD-TYPE    141     62     50      0
D21V3, multiclass
        clus
vv       AMP PEAK 21(20P11.21) MUTATED AMP PEAK 21(20P11.21) WILD-TYPE
  CLUS_1                            74                             141
  CLUS_2                           185                              62
  CLUS_3                            82                              50
  CLUS_4                            22                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20P11.21) MUTATED       64     94     75
  AMP PEAK 21(20P11.21) WILD-TYPE     53     35     69
D21V4, multiclass
        clus
vv       AMP PEAK 21(20P11.21) MUTATED AMP PEAK 21(20P11.21) WILD-TYPE
  CLUS_1                            64                              53
  CLUS_2                            94                              35
  CLUS_3                            75                              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20P11.21) MUTATED       73    115     89
  AMP PEAK 21(20P11.21) WILD-TYPE     35     82     88
D21V5, multiclass
        clus
vv       AMP PEAK 21(20P11.21) MUTATED AMP PEAK 21(20P11.21) WILD-TYPE
  CLUS_1                            73                              35
  CLUS_2                           115                              82
  CLUS_3                            89                              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20P11.21) MUTATED      138     85     54
  AMP PEAK 21(20P11.21) WILD-TYPE     90     83     32
D21V6, multiclass
        clus
vv       AMP PEAK 21(20P11.21) MUTATED AMP PEAK 21(20P11.21) WILD-TYPE
  CLUS_1                           138                              90
  CLUS_2                            85                              83
  CLUS_3                            54                              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20P11.21) MUTATED      121     56     70    113
  AMP PEAK 21(20P11.21) WILD-TYPE     35     72     61     85
D21V7, multiclass
        clus
vv       AMP PEAK 21(20P11.21) MUTATED AMP PEAK 21(20P11.21) WILD-TYPE
  CLUS_1                           121                              35
  CLUS_2                            56                              72
  CLUS_3                            70                              61
  CLUS_4                           113                              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(20P11.21) MUTATED       56     51     17     40     61     99
  AMP PEAK 21(20P11.21) WILD-TYPE     24     35     47     17     29     39
                                 vv
clus                              CLUS_7
  AMP PEAK 21(20P11.21) MUTATED       36
  AMP PEAK 21(20P11.21) WILD-TYPE     62
D21V8, multiclass
        clus
vv       AMP PEAK 21(20P11.21) MUTATED AMP PEAK 21(20P11.21) WILD-TYPE
  CLUS_1                            56                              24
  CLUS_2                            51                              35
  CLUS_3                            17                              47
  CLUS_4                            40                              17
  CLUS_5                            61                              29
  CLUS_6                            99                              39
  CLUS_7                            36                              62
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20P11.21) MUTATED       93     61     57    104
  AMP PEAK 21(20P11.21) WILD-TYPE     60     34     29    101
D21V9, multiclass
        clus
vv       AMP PEAK 21(20P11.21) MUTATED AMP PEAK 21(20P11.21) WILD-TYPE
  CLUS_1                            93                              60
  CLUS_2                            61                              34
  CLUS_3                            57                              29
  CLUS_4                           104                             101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(20P11.21) MUTATED       28     41     19     58     18     38
  AMP PEAK 21(20P11.21) WILD-TYPE     21     33     10     28     59     16
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 21(20P11.21) MUTATED       38     15     60
  AMP PEAK 21(20P11.21) WILD-TYPE     19     17     21
D21V10, multiclass
        clus
vv       AMP PEAK 21(20P11.21) MUTATED AMP PEAK 21(20P11.21) WILD-TYPE
  CLUS_1                            28                              21
  CLUS_2                            41                              33
  CLUS_3                            19                              10
  CLUS_4                            58                              28
  CLUS_5                            18                              59
  CLUS_6                            38                              16
  CLUS_7                            38                              19
  CLUS_8                            15                              17
  CLUS_9                            60                              21
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20P11.21) MUTATED       23     31     25     10
  AMP PEAK 21(20P11.21) WILD-TYPE     12      9     13     12
D21V11, multiclass
        clus
vv       AMP PEAK 21(20P11.21) MUTATED AMP PEAK 21(20P11.21) WILD-TYPE
  CLUS_1                            23                              12
  CLUS_2                            31                               9
  CLUS_3                            25                              13
  CLUS_4                            10                              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20P11.21) MUTATED       38     10     25     16
  AMP PEAK 21(20P11.21) WILD-TYPE     25      6      9      6
D21V12, multiclass
        clus
vv       AMP PEAK 21(20P11.21) MUTATED AMP PEAK 21(20P11.21) WILD-TYPE
  CLUS_1                            38                              25
  CLUS_2                            10                               6
  CLUS_3                            25                               9
  CLUS_4                            16                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q11.21) MUTATED       19     61     59     25
  AMP PEAK 22(20Q11.21) WILD-TYPE     26      2      6     18
D22V1, multiclass
        clus
vv       AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE
  CLUS_1                            19                              26
  CLUS_2                            61                               2
  CLUS_3                            59                               6
  CLUS_4                            25                              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q11.21) MUTATED       15     86     63
  AMP PEAK 22(20Q11.21) WILD-TYPE     35      3     14
D22V2, multiclass
        clus
vv       AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE
  CLUS_1                            15                              35
  CLUS_2                            86                               3
  CLUS_3                            63                              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q11.21) MUTATED       92    245    110     22
  AMP PEAK 22(20Q11.21) WILD-TYPE    123      2     22      0
D22V3, multiclass
        clus
vv       AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE
  CLUS_1                            92                             123
  CLUS_2                           245                               2
  CLUS_3                           110                              22
  CLUS_4                            22                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q11.21) MUTATED       83    128     88
  AMP PEAK 22(20Q11.21) WILD-TYPE     34      1     56
D22V4, multiclass
        clus
vv       AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE
  CLUS_1                            83                              34
  CLUS_2                           128                               1
  CLUS_3                            88                              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q11.21) MUTATED       86    157    122
  AMP PEAK 22(20Q11.21) WILD-TYPE     22     40     55
D22V5, multiclass
        clus
vv       AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE
  CLUS_1                            86                              22
  CLUS_2                           157                              40
  CLUS_3                           122                              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q11.21) MUTATED      171    126     68
  AMP PEAK 22(20Q11.21) WILD-TYPE     57     42     18
D22V6, multiclass
        clus
vv       AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE
  CLUS_1                           171                              57
  CLUS_2                           126                              42
  CLUS_3                            68                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q11.21) MUTATED      152     74     93    147
  AMP PEAK 22(20Q11.21) WILD-TYPE      4     54     38     51
D22V7, multiclass
        clus
vv       AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE
  CLUS_1                           152                               4
  CLUS_2                            74                              54
  CLUS_3                            93                              38
  CLUS_4                           147                              51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20Q11.21) MUTATED       74     63     17     50     84    132
  AMP PEAK 22(20Q11.21) WILD-TYPE      6     23     47      7      6      6
                                 vv
clus                              CLUS_7
  AMP PEAK 22(20Q11.21) MUTATED       46
  AMP PEAK 22(20Q11.21) WILD-TYPE     52
D22V8, multiclass
        clus
vv       AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE
  CLUS_1                            74                               6
  CLUS_2                            63                              23
  CLUS_3                            17                              47
  CLUS_4                            50                               7
  CLUS_5                            84                               6
  CLUS_6                           132                               6
  CLUS_7                            46                              52
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q11.21) MUTATED      111     78     83    137
  AMP PEAK 22(20Q11.21) WILD-TYPE     42     17      3     68
D22V9, multiclass
        clus
vv       AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE
  CLUS_1                           111                              42
  CLUS_2                            78                              17
  CLUS_3                            83                               3
  CLUS_4                           137                              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20Q11.21) MUTATED       36     56     20     74     28     48
  AMP PEAK 22(20Q11.21) WILD-TYPE     13     18      9     12     49      6
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 22(20Q11.21) MUTATED       51     20     76
  AMP PEAK 22(20Q11.21) WILD-TYPE      6     12      5
D22V10, multiclass
        clus
vv       AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE
  CLUS_1                            36                              13
  CLUS_2                            56                              18
  CLUS_3                            20                               9
  CLUS_4                            74                              12
  CLUS_5                            28                              49
  CLUS_6                            48                               6
  CLUS_7                            51                               6
  CLUS_8                            20                              12
  CLUS_9                            76                               5
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q11.21) MUTATED       28     37     35     12
  AMP PEAK 22(20Q11.21) WILD-TYPE      7      3      3     10
D22V11, multiclass
        clus
vv       AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE
  CLUS_1                            28                               7
  CLUS_2                            37                               3
  CLUS_3                            35                               3
  CLUS_4                            12                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q11.21) MUTATED       47     15     30     20
  AMP PEAK 22(20Q11.21) WILD-TYPE     16      1      4      2
D22V12, multiclass
        clus
vv       AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE
  CLUS_1                            47                              16
  CLUS_2                            15                               1
  CLUS_3                            30                               4
  CLUS_4                            20                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(20Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q12) MUTATED       18     61     59     24
  AMP PEAK 23(20Q12) WILD-TYPE     27      2      6     19
D23V1, multiclass
        clus
vv       AMP PEAK 23(20Q12) MUTATED AMP PEAK 23(20Q12) WILD-TYPE
  CLUS_1                         18                           27
  CLUS_2                         61                            2
  CLUS_3                         59                            6
  CLUS_4                         24                           19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20Q12) MUTATED       14     86     62
  AMP PEAK 23(20Q12) WILD-TYPE     36      3     15
D23V2, multiclass
        clus
vv       AMP PEAK 23(20Q12) MUTATED AMP PEAK 23(20Q12) WILD-TYPE
  CLUS_1                         14                           36
  CLUS_2                         86                            3
  CLUS_3                         62                           15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q12) MUTATED       91    245    113     22
  AMP PEAK 23(20Q12) WILD-TYPE    124      2     19      0
D23V3, multiclass
        clus
vv       AMP PEAK 23(20Q12) MUTATED AMP PEAK 23(20Q12) WILD-TYPE
  CLUS_1                         91                          124
  CLUS_2                        245                            2
  CLUS_3                        113                           19
  CLUS_4                         22                            0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20Q12) MUTATED       84    128     91
  AMP PEAK 23(20Q12) WILD-TYPE     33      1     53
D23V4, multiclass
        clus
vv       AMP PEAK 23(20Q12) MUTATED AMP PEAK 23(20Q12) WILD-TYPE
  CLUS_1                         84                           33
  CLUS_2                        128                            1
  CLUS_3                         91                           53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20Q12) MUTATED       85    158    123
  AMP PEAK 23(20Q12) WILD-TYPE     23     39     54
D23V5, multiclass
        clus
vv       AMP PEAK 23(20Q12) MUTATED AMP PEAK 23(20Q12) WILD-TYPE
  CLUS_1                         85                           23
  CLUS_2                        158                           39
  CLUS_3                        123                           54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20Q12) MUTATED      173    125     68
  AMP PEAK 23(20Q12) WILD-TYPE     55     43     18
D23V6, multiclass
        clus
vv       AMP PEAK 23(20Q12) MUTATED AMP PEAK 23(20Q12) WILD-TYPE
  CLUS_1                        173                           55
  CLUS_2                        125                           43
  CLUS_3                         68                           18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q12) MUTATED      152     75     95    146
  AMP PEAK 23(20Q12) WILD-TYPE      4     53     36     52
D23V7, multiclass
        clus
vv       AMP PEAK 23(20Q12) MUTATED AMP PEAK 23(20Q12) WILD-TYPE
  CLUS_1                        152                            4
  CLUS_2                         75                           53
  CLUS_3                         95                           36
  CLUS_4                        146                           52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 23(20Q12) MUTATED       74     64     19     50     85    132     44
  AMP PEAK 23(20Q12) WILD-TYPE      6     22     45      7      5      6     54
D23V8, multiclass
        clus
vv       AMP PEAK 23(20Q12) MUTATED AMP PEAK 23(20Q12) WILD-TYPE
  CLUS_1                         74                            6
  CLUS_2                         64                           22
  CLUS_3                         19                           45
  CLUS_4                         50                            7
  CLUS_5                         85                            5
  CLUS_6                        132                            6
  CLUS_7                         44                           54
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q12) MUTATED      113     79     83    136
  AMP PEAK 23(20Q12) WILD-TYPE     40     16      3     69
D23V9, multiclass
        clus
vv       AMP PEAK 23(20Q12) MUTATED AMP PEAK 23(20Q12) WILD-TYPE
  CLUS_1                        113                           40
  CLUS_2                         79                           16
  CLUS_3                         83                            3
  CLUS_4                        136                           69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 23(20Q12) MUTATED       36     57     20     75     28     48     51
  AMP PEAK 23(20Q12) WILD-TYPE     13     17      9     11     49      6      6
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 23(20Q12) MUTATED       20     76
  AMP PEAK 23(20Q12) WILD-TYPE     12      5
D23V10, multiclass
        clus
vv       AMP PEAK 23(20Q12) MUTATED AMP PEAK 23(20Q12) WILD-TYPE
  CLUS_1                         36                           13
  CLUS_2                         57                           17
  CLUS_3                         20                            9
  CLUS_4                         75                           11
  CLUS_5                         28                           49
  CLUS_6                         48                            6
  CLUS_7                         51                            6
  CLUS_8                         20                           12
  CLUS_9                         76                            5
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q12) MUTATED       29     38     36     12
  AMP PEAK 23(20Q12) WILD-TYPE      6      2      2     10
D23V11, multiclass
        clus
vv       AMP PEAK 23(20Q12) MUTATED AMP PEAK 23(20Q12) WILD-TYPE
  CLUS_1                         29                            6
  CLUS_2                         38                            2
  CLUS_3                         36                            2
  CLUS_4                         12                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q12) MUTATED       49     15     30     21
  AMP PEAK 23(20Q12) WILD-TYPE     14      1      4      1
D23V12, multiclass
        clus
vv       AMP PEAK 23(20Q12) MUTATED AMP PEAK 23(20Q12) WILD-TYPE
  CLUS_1                         49                           14
  CLUS_2                         15                            1
  CLUS_3                         30                            4
  CLUS_4                         21                            1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(20Q13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20Q13.12) MUTATED       19     61     59     25
  AMP PEAK 24(20Q13.12) WILD-TYPE     26      2      6     18
D24V1, multiclass
        clus
vv       AMP PEAK 24(20Q13.12) MUTATED AMP PEAK 24(20Q13.12) WILD-TYPE
  CLUS_1                            19                              26
  CLUS_2                            61                               2
  CLUS_3                            59                               6
  CLUS_4                            25                              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20Q13.12) MUTATED       15     86     63
  AMP PEAK 24(20Q13.12) WILD-TYPE     35      3     14
D24V2, multiclass
        clus
vv       AMP PEAK 24(20Q13.12) MUTATED AMP PEAK 24(20Q13.12) WILD-TYPE
  CLUS_1                            15                              35
  CLUS_2                            86                               3
  CLUS_3                            63                              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20Q13.12) MUTATED       93    245    113     22
  AMP PEAK 24(20Q13.12) WILD-TYPE    122      2     19      0
D24V3, multiclass
        clus
vv       AMP PEAK 24(20Q13.12) MUTATED AMP PEAK 24(20Q13.12) WILD-TYPE
  CLUS_1                            93                             122
  CLUS_2                           245                               2
  CLUS_3                           113                              19
  CLUS_4                            22                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20Q13.12) MUTATED       84    128     91
  AMP PEAK 24(20Q13.12) WILD-TYPE     33      1     53
D24V4, multiclass
        clus
vv       AMP PEAK 24(20Q13.12) MUTATED AMP PEAK 24(20Q13.12) WILD-TYPE
  CLUS_1                            84                              33
  CLUS_2                           128                               1
  CLUS_3                            91                              53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20Q13.12) MUTATED       85    160    123
  AMP PEAK 24(20Q13.12) WILD-TYPE     23     37     54
D24V5, multiclass
        clus
vv       AMP PEAK 24(20Q13.12) MUTATED AMP PEAK 24(20Q13.12) WILD-TYPE
  CLUS_1                            85                              23
  CLUS_2                           160                              37
  CLUS_3                           123                              54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20Q13.12) MUTATED      173    126     69
  AMP PEAK 24(20Q13.12) WILD-TYPE     55     42     17
D24V6, multiclass
        clus
vv       AMP PEAK 24(20Q13.12) MUTATED AMP PEAK 24(20Q13.12) WILD-TYPE
  CLUS_1                           173                              55
  CLUS_2                           126                              42
  CLUS_3                            69                              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20Q13.12) MUTATED      152     75     95    148
  AMP PEAK 24(20Q13.12) WILD-TYPE      4     53     36     50
D24V7, multiclass
        clus
vv       AMP PEAK 24(20Q13.12) MUTATED AMP PEAK 24(20Q13.12) WILD-TYPE
  CLUS_1                           152                               4
  CLUS_2                            75                              53
  CLUS_3                            95                              36
  CLUS_4                           148                              50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(20Q13.12) MUTATED       74     64     19     50     85    132
  AMP PEAK 24(20Q13.12) WILD-TYPE      6     22     45      7      5      6
                                 vv
clus                              CLUS_7
  AMP PEAK 24(20Q13.12) MUTATED       46
  AMP PEAK 24(20Q13.12) WILD-TYPE     52
D24V8, multiclass
        clus
vv       AMP PEAK 24(20Q13.12) MUTATED AMP PEAK 24(20Q13.12) WILD-TYPE
  CLUS_1                            74                               6
  CLUS_2                            64                              22
  CLUS_3                            19                              45
  CLUS_4                            50                               7
  CLUS_5                            85                               5
  CLUS_6                           132                               6
  CLUS_7                            46                              52
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20Q13.12) MUTATED      114     79     83    138
  AMP PEAK 24(20Q13.12) WILD-TYPE     39     16      3     67
D24V9, multiclass
        clus
vv       AMP PEAK 24(20Q13.12) MUTATED AMP PEAK 24(20Q13.12) WILD-TYPE
  CLUS_1                           114                              39
  CLUS_2                            79                              16
  CLUS_3                            83                               3
  CLUS_4                           138                              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(20Q13.12) MUTATED       36     57     21     75     30     48
  AMP PEAK 24(20Q13.12) WILD-TYPE     13     17      8     11     47      6
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 24(20Q13.12) MUTATED       51     20     76
  AMP PEAK 24(20Q13.12) WILD-TYPE      6     12      5
D24V10, multiclass
        clus
vv       AMP PEAK 24(20Q13.12) MUTATED AMP PEAK 24(20Q13.12) WILD-TYPE
  CLUS_1                            36                              13
  CLUS_2                            57                              17
  CLUS_3                            21                               8
  CLUS_4                            75                              11
  CLUS_5                            30                              47
  CLUS_6                            48                               6
  CLUS_7                            51                               6
  CLUS_8                            20                              12
  CLUS_9                            76                               5
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20Q13.12) MUTATED       29     38     36     12
  AMP PEAK 24(20Q13.12) WILD-TYPE      6      2      2     10
D24V11, multiclass
        clus
vv       AMP PEAK 24(20Q13.12) MUTATED AMP PEAK 24(20Q13.12) WILD-TYPE
  CLUS_1                            29                               6
  CLUS_2                            38                               2
  CLUS_3                            36                               2
  CLUS_4                            12                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20Q13.12) MUTATED       49     15     30     21
  AMP PEAK 24(20Q13.12) WILD-TYPE     14      1      4      1
D24V12, multiclass
        clus
vv       AMP PEAK 24(20Q13.12) MUTATED AMP PEAK 24(20Q13.12) WILD-TYPE
  CLUS_1                            49                              14
  CLUS_2                            15                               1
  CLUS_3                            30                               4
  CLUS_4                            21                               1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK  1(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       14     37     34      8
  DEL PEAK  1(1P36.11) WILD-TYPE     31     26     31     35
D25V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           14                             31
  CLUS_2                           37                             26
  CLUS_3                           34                             31
  CLUS_4                            8                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       12     54     27
  DEL PEAK  1(1P36.11) WILD-TYPE     38     35     50
D25V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           12                             38
  CLUS_2                           54                             35
  CLUS_3                           27                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       34    131     63     16
  DEL PEAK  1(1P36.11) WILD-TYPE    181    116     69      6
D25V3, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           34                            181
  CLUS_2                          131                            116
  CLUS_3                           63                             69
  CLUS_4                           16                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       42     68     40
  DEL PEAK  1(1P36.11) WILD-TYPE     75     61    104
D25V4, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           42                             75
  CLUS_2                           68                             61
  CLUS_3                           40                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       42     89     55
  DEL PEAK  1(1P36.11) WILD-TYPE     66    108    122
D25V5, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           42                             66
  CLUS_2                           89                            108
  CLUS_3                           55                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       79     69     38
  DEL PEAK  1(1P36.11) WILD-TYPE    149     99     48
D25V6, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           79                            149
  CLUS_2                           69                             99
  CLUS_3                           38                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       81     28     54     80
  DEL PEAK  1(1P36.11) WILD-TYPE     75    100     77    118
D25V7, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           81                             75
  CLUS_2                           28                            100
  CLUS_3                           54                             77
  CLUS_4                           80                            118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       36     30      6     22     48     72
  DEL PEAK  1(1P36.11) WILD-TYPE     44     56     58     35     42     66
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.11) MUTATED       29
  DEL PEAK  1(1P36.11) WILD-TYPE     69
D25V8, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           36                             44
  CLUS_2                           30                             56
  CLUS_3                            6                             58
  CLUS_4                           22                             35
  CLUS_5                           48                             42
  CLUS_6                           72                             66
  CLUS_7                           29                             69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       55     42     39     78
  DEL PEAK  1(1P36.11) WILD-TYPE     98     53     47    127
D25V9, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           55                             98
  CLUS_2                           42                             53
  CLUS_3                           39                             47
  CLUS_4                           78                            127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       20     28      8     38     12     32
  DEL PEAK  1(1P36.11) WILD-TYPE     29     46     21     48     65     22
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  1(1P36.11) MUTATED       23     12     41
  DEL PEAK  1(1P36.11) WILD-TYPE     34     20     40
D25V10, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           20                             29
  CLUS_2                           28                             46
  CLUS_3                            8                             21
  CLUS_4                           38                             48
  CLUS_5                           12                             65
  CLUS_6                           32                             22
  CLUS_7                           23                             34
  CLUS_8                           12                             20
  CLUS_9                           41                             40
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       13     21     14      5
  DEL PEAK  1(1P36.11) WILD-TYPE     22     19     24     17
D25V11, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           13                             22
  CLUS_2                           21                             19
  CLUS_3                           14                             24
  CLUS_4                            5                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       24      7     12     10
  DEL PEAK  1(1P36.11) WILD-TYPE     39      9     22     12
D25V12, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           24                             39
  CLUS_2                            7                              9
  CLUS_3                           12                             22
  CLUS_4                           10                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  2(1P33) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       12     21     22      5
  DEL PEAK  2(1P33) WILD-TYPE     33     42     43     38
D26V1, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        12                          33
  CLUS_2                        21                          42
  CLUS_3                        22                          43
  CLUS_4                         5                          38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       10     36     14
  DEL PEAK  2(1P33) WILD-TYPE     40     53     63
D26V2, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        10                          40
  CLUS_2                        36                          53
  CLUS_3                        14                          63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       21    103     38     14
  DEL PEAK  2(1P33) WILD-TYPE    194    144     94      8
D26V3, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        21                         194
  CLUS_2                       103                         144
  CLUS_3                        38                          94
  CLUS_4                        14                           8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       36     49     30
  DEL PEAK  2(1P33) WILD-TYPE     81     80    114
D26V4, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        36                          81
  CLUS_2                        49                          80
  CLUS_3                        30                         114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       28     64     46
  DEL PEAK  2(1P33) WILD-TYPE     80    133    131
D26V5, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        28                          80
  CLUS_2                        64                         133
  CLUS_3                        46                         131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       61     50     27
  DEL PEAK  2(1P33) WILD-TYPE    167    118     59
D26V6, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        61                         167
  CLUS_2                        50                         118
  CLUS_3                        27                          59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       64     21     39     51
  DEL PEAK  2(1P33) WILD-TYPE     92    107     92    147
D26V7, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        64                          92
  CLUS_2                        21                         107
  CLUS_3                        39                          92
  CLUS_4                        51                         147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1P33) MUTATED       29     21      7     18     34     47     19
  DEL PEAK  2(1P33) WILD-TYPE     51     65     57     39     56     91     79
D26V8, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        29                          51
  CLUS_2                        21                          65
  CLUS_3                         7                          57
  CLUS_4                        18                          39
  CLUS_5                        34                          56
  CLUS_6                        47                          91
  CLUS_7                        19                          79
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       41     35     29     47
  DEL PEAK  2(1P33) WILD-TYPE    112     60     57    158
D26V9, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        41                         112
  CLUS_2                        35                          60
  CLUS_3                        29                          57
  CLUS_4                        47                         158
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1P33) MUTATED       15     20      5     25     11     24     18
  DEL PEAK  2(1P33) WILD-TYPE     34     54     24     61     66     30     39
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK  2(1P33) MUTATED        9     25
  DEL PEAK  2(1P33) WILD-TYPE     23     56
D26V10, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        15                          34
  CLUS_2                        20                          54
  CLUS_3                         5                          24
  CLUS_4                        25                          61
  CLUS_5                        11                          66
  CLUS_6                        24                          30
  CLUS_7                        18                          39
  CLUS_8                         9                          23
  CLUS_9                        25                          56
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       12     17     10      5
  DEL PEAK  2(1P33) WILD-TYPE     23     23     28     17
D26V11, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        12                          23
  CLUS_2                        17                          23
  CLUS_3                        10                          28
  CLUS_4                         5                          17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       21      4     10      9
  DEL PEAK  2(1P33) WILD-TYPE     42     12     24     13
D26V12, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        21                          42
  CLUS_2                         4                          12
  CLUS_3                        10                          24
  CLUS_4                         9                          13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  3(1P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.2) MUTATED       12     19     19      7
  DEL PEAK  3(1P13.2) WILD-TYPE     33     44     46     36
D27V1, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          12                            33
  CLUS_2                          19                            44
  CLUS_3                          19                            46
  CLUS_4                           7                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.2) MUTATED       10     32     15
  DEL PEAK  3(1P13.2) WILD-TYPE     40     57     62
D27V2, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          10                            40
  CLUS_2                          32                            57
  CLUS_3                          15                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.2) MUTATED       25    103     35     13
  DEL PEAK  3(1P13.2) WILD-TYPE    190    144     97      9
D27V3, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          25                           190
  CLUS_2                         103                           144
  CLUS_3                          35                            97
  CLUS_4                          13                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.2) MUTATED       33     51     33
  DEL PEAK  3(1P13.2) WILD-TYPE     84     78    111
D27V4, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          33                            84
  CLUS_2                          51                            78
  CLUS_3                          33                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.2) MUTATED       31     62     47
  DEL PEAK  3(1P13.2) WILD-TYPE     77    135    130
D27V5, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          31                            77
  CLUS_2                          62                           135
  CLUS_3                          47                           130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.2) MUTATED       65     48     27
  DEL PEAK  3(1P13.2) WILD-TYPE    163    120     59
D27V6, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          65                           163
  CLUS_2                          48                           120
  CLUS_3                          27                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.2) MUTATED       59     20     43     53
  DEL PEAK  3(1P13.2) WILD-TYPE     97    108     88    145
D27V7, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          59                            97
  CLUS_2                          20                           108
  CLUS_3                          43                            88
  CLUS_4                          53                           145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1P13.2) MUTATED       30     20      8     15     37     46
  DEL PEAK  3(1P13.2) WILD-TYPE     50     66     56     42     53     92
                               vv
clus                            CLUS_7
  DEL PEAK  3(1P13.2) MUTATED       19
  DEL PEAK  3(1P13.2) WILD-TYPE     79
D27V8, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          30                            50
  CLUS_2                          20                            66
  CLUS_3                           8                            56
  CLUS_4                          15                            42
  CLUS_5                          37                            53
  CLUS_6                          46                            92
  CLUS_7                          19                            79
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.2) MUTATED       39     35     29     46
  DEL PEAK  3(1P13.2) WILD-TYPE    114     60     57    159
D27V9, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          39                           114
  CLUS_2                          35                            60
  CLUS_3                          29                            57
  CLUS_4                          46                           159
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1P13.2) MUTATED       15     18      6     26      8     22
  DEL PEAK  3(1P13.2) WILD-TYPE     34     56     23     60     69     32
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  3(1P13.2) MUTATED       19      9     26
  DEL PEAK  3(1P13.2) WILD-TYPE     38     23     55
D27V10, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          15                            34
  CLUS_2                          18                            56
  CLUS_3                           6                            23
  CLUS_4                          26                            60
  CLUS_5                           8                            69
  CLUS_6                          22                            32
  CLUS_7                          19                            38
  CLUS_8                           9                            23
  CLUS_9                          26                            55
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.2) MUTATED       12     16     11      5
  DEL PEAK  3(1P13.2) WILD-TYPE     23     24     27     17
D27V11, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          12                            23
  CLUS_2                          16                            24
  CLUS_3                          11                            27
  CLUS_4                           5                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.2) MUTATED       20      5     11      8
  DEL PEAK  3(1P13.2) WILD-TYPE     43     11     23     14
D27V12, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          20                            43
  CLUS_2                           5                            11
  CLUS_3                          11                            23
  CLUS_4                           8                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  4(2P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2P12) MUTATED        3      4      4      3
  DEL PEAK  4(2P12) WILD-TYPE     42     59     61     40
D28V1, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         3                          42
  CLUS_2                         4                          59
  CLUS_3                         4                          61
  CLUS_4                         3                          40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P12) MUTATED        4      6      4
  DEL PEAK  4(2P12) WILD-TYPE     46     83     73
D28V2, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         4                          46
  CLUS_2                         6                          83
  CLUS_3                         4                          73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2P12) MUTATED        1     10     10      0
  DEL PEAK  4(2P12) WILD-TYPE    214    237    122     22
D28V3, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         1                         214
  CLUS_2                        10                         237
  CLUS_3                        10                         122
  CLUS_4                         0                          22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P12) MUTATED        0      6      1
  DEL PEAK  4(2P12) WILD-TYPE    117    123    143
D28V4, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         0                         117
  CLUS_2                         6                         123
  CLUS_3                         1                         143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P12) MUTATED        7      5      5
  DEL PEAK  4(2P12) WILD-TYPE    101    192    172
D28V5, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         7                         101
  CLUS_2                         5                         192
  CLUS_3                         5                         172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P12) MUTATED        6      2      9
  DEL PEAK  4(2P12) WILD-TYPE    222    166     77
D28V6, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         6                         222
  CLUS_2                         2                         166
  CLUS_3                         9                          77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2P12) MUTATED        4      1      2     14
  DEL PEAK  4(2P12) WILD-TYPE    152    127    129    184
D28V7, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         4                         152
  CLUS_2                         1                         127
  CLUS_3                         2                         129
  CLUS_4                        14                         184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  4(2P12) MUTATED        0      1      0      2      2      8      8
  DEL PEAK  4(2P12) WILD-TYPE     80     85     64     55     88    130     90
D28V8, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         0                          80
  CLUS_2                         1                          85
  CLUS_3                         0                          64
  CLUS_4                         2                          55
  CLUS_5                         2                          88
  CLUS_6                         8                         130
  CLUS_7                         8                          90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2P12) MUTATED        1      0      8     11
  DEL PEAK  4(2P12) WILD-TYPE    152     95     78    194
D28V9, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         1                         152
  CLUS_2                         0                          95
  CLUS_3                         8                          78
  CLUS_4                        11                         194
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  4(2P12) MUTATED        0      1      1      2      1      2      3
  DEL PEAK  4(2P12) WILD-TYPE     49     73     28     84     76     52     54
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK  4(2P12) MUTATED        2      8
  DEL PEAK  4(2P12) WILD-TYPE     30     73
D28V10, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         0                          49
  CLUS_2                         1                          73
  CLUS_3                         1                          28
  CLUS_4                         2                          84
  CLUS_5                         1                          76
  CLUS_6                         2                          52
  CLUS_7                         3                          54
  CLUS_8                         2                          30
  CLUS_9                         8                          73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2P12) MUTATED        1      1      1      0
  DEL PEAK  4(2P12) WILD-TYPE     34     39     37     22
D28V11, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         1                          34
  CLUS_2                         1                          39
  CLUS_3                         1                          37
  CLUS_4                         0                          22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2P12) MUTATED        1      1      0      1
  DEL PEAK  4(2P12) WILD-TYPE     62     15     34     21
D28V12, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         1                          62
  CLUS_2                         1                          15
  CLUS_3                         0                          34
  CLUS_4                         1                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  5(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q22.1) MUTATED        4      6      4      5
  DEL PEAK  5(2Q22.1) WILD-TYPE     41     57     61     38
D29V1, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           4                            41
  CLUS_2                           6                            57
  CLUS_3                           4                            61
  CLUS_4                           5                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED        5      6      8
  DEL PEAK  5(2Q22.1) WILD-TYPE     45     83     69
D29V2, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           5                            45
  CLUS_2                           6                            83
  CLUS_3                           8                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q22.1) MUTATED        5     19      9      2
  DEL PEAK  5(2Q22.1) WILD-TYPE    210    228    123     20
D29V3, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           5                           210
  CLUS_2                          19                           228
  CLUS_3                           9                           123
  CLUS_4                           2                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED        4      8      5
  DEL PEAK  5(2Q22.1) WILD-TYPE    113    121    139
D29V4, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           4                           113
  CLUS_2                           8                           121
  CLUS_3                           5                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED        6      7     12
  DEL PEAK  5(2Q22.1) WILD-TYPE    102    190    165
D29V5, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           6                           102
  CLUS_2                           7                           190
  CLUS_3                          12                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       12      6      7
  DEL PEAK  5(2Q22.1) WILD-TYPE    216    162     79
D29V6, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          12                           216
  CLUS_2                           6                           162
  CLUS_3                           7                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q22.1) MUTATED        8      3      8     16
  DEL PEAK  5(2Q22.1) WILD-TYPE    148    125    123    182
D29V7, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           8                           148
  CLUS_2                           3                           125
  CLUS_3                           8                           123
  CLUS_4                          16                           182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q22.1) MUTATED        3      3      1      1      7      9
  DEL PEAK  5(2Q22.1) WILD-TYPE     77     83     63     56     83    129
                               vv
clus                            CLUS_7
  DEL PEAK  5(2Q22.1) MUTATED       11
  DEL PEAK  5(2Q22.1) WILD-TYPE     87
D29V8, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           3                            77
  CLUS_2                           3                            83
  CLUS_3                           1                            63
  CLUS_4                           1                            56
  CLUS_5                           7                            83
  CLUS_6                           9                           129
  CLUS_7                          11                            87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q22.1) MUTATED        4      3      9     14
  DEL PEAK  5(2Q22.1) WILD-TYPE    149     92     77    191
D29V9, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           4                           149
  CLUS_2                           3                            92
  CLUS_3                           9                            77
  CLUS_4                          14                           191
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q22.1) MUTATED        0      4      1      6      4      0
  DEL PEAK  5(2Q22.1) WILD-TYPE     49     70     28     80     73     54
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  5(2Q22.1) MUTATED        4      3      8
  DEL PEAK  5(2Q22.1) WILD-TYPE     53     29     73
D29V10, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           0                            49
  CLUS_2                           4                            70
  CLUS_3                           1                            28
  CLUS_4                           6                            80
  CLUS_5                           4                            73
  CLUS_6                           0                            54
  CLUS_7                           4                            53
  CLUS_8                           3                            29
  CLUS_9                           8                            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q22.1) MUTATED        2      1      2      1
  DEL PEAK  5(2Q22.1) WILD-TYPE     33     39     36     21
D29V11, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           2                            33
  CLUS_2                           1                            39
  CLUS_3                           2                            36
  CLUS_4                           1                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q22.1) MUTATED        2      1      1      2
  DEL PEAK  5(2Q22.1) WILD-TYPE     61     15     33     20
D29V12, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           2                            61
  CLUS_2                           1                            15
  CLUS_3                           1                            33
  CLUS_4                           2                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  6(3P26.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.3) MUTATED        9     10     10      4
  DEL PEAK  6(3P26.3) WILD-TYPE     36     53     55     39
D30V1, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                           9                            36
  CLUS_2                          10                            53
  CLUS_3                          10                            55
  CLUS_4                           4                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.3) MUTATED        6     16     11
  DEL PEAK  6(3P26.3) WILD-TYPE     44     73     66
D30V2, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                           6                            44
  CLUS_2                          16                            73
  CLUS_3                          11                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.3) MUTATED       18     51     18      6
  DEL PEAK  6(3P26.3) WILD-TYPE    197    196    114     16
D30V3, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          18                           197
  CLUS_2                          51                           196
  CLUS_3                          18                           114
  CLUS_4                           6                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.3) MUTATED       23     19     19
  DEL PEAK  6(3P26.3) WILD-TYPE     94    110    125
D30V4, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          23                            94
  CLUS_2                          19                           110
  CLUS_3                          19                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.3) MUTATED       13     29     29
  DEL PEAK  6(3P26.3) WILD-TYPE     95    168    148
D30V5, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          13                            95
  CLUS_2                          29                           168
  CLUS_3                          29                           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.3) MUTATED       34     19     18
  DEL PEAK  6(3P26.3) WILD-TYPE    194    149     68
D30V6, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          34                           194
  CLUS_2                          19                           149
  CLUS_3                          18                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.3) MUTATED       24     14     22     33
  DEL PEAK  6(3P26.3) WILD-TYPE    132    114    109    165
D30V7, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          24                           132
  CLUS_2                          14                           114
  CLUS_3                          22                           109
  CLUS_4                          33                           165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P26.3) MUTATED       12     10      6     11     15     26
  DEL PEAK  6(3P26.3) WILD-TYPE     68     76     58     46     75    112
                               vv
clus                            CLUS_7
  DEL PEAK  6(3P26.3) MUTATED       13
  DEL PEAK  6(3P26.3) WILD-TYPE     85
D30V8, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          12                            68
  CLUS_2                          10                            76
  CLUS_3                           6                            58
  CLUS_4                          11                            46
  CLUS_5                          15                            75
  CLUS_6                          26                           112
  CLUS_7                          13                            85
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.3) MUTATED       23     16     14     30
  DEL PEAK  6(3P26.3) WILD-TYPE    130     79     72    175
D30V9, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          23                           130
  CLUS_2                          16                            79
  CLUS_3                          14                            72
  CLUS_4                          30                           175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P26.3) MUTATED        8     10      2     14      8      9
  DEL PEAK  6(3P26.3) WILD-TYPE     41     64     27     72     69     45
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  6(3P26.3) MUTATED       10      6     16
  DEL PEAK  6(3P26.3) WILD-TYPE     47     26     65
D30V10, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                           8                            41
  CLUS_2                          10                            64
  CLUS_3                           2                            27
  CLUS_4                          14                            72
  CLUS_5                           8                            69
  CLUS_6                           9                            45
  CLUS_7                          10                            47
  CLUS_8                           6                            26
  CLUS_9                          16                            65
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.3) MUTATED        6     11      7      5
  DEL PEAK  6(3P26.3) WILD-TYPE     29     29     31     17
D30V11, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                           6                            29
  CLUS_2                          11                            29
  CLUS_3                           7                            31
  CLUS_4                           5                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.3) MUTATED       13      4      5      7
  DEL PEAK  6(3P26.3) WILD-TYPE     50     12     29     15
D30V12, multiclass
        clus
vv       DEL PEAK  6(3P26.3) MUTATED DEL PEAK  6(3P26.3) WILD-TYPE
  CLUS_1                          13                            50
  CLUS_2                           4                            12
  CLUS_3                           5                            29
  CLUS_4                           7                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  7(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P14.2) MUTATED       12     13     12      8
  DEL PEAK  7(3P14.2) WILD-TYPE     33     50     53     35
D31V1, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          12                            33
  CLUS_2                          13                            50
  CLUS_3                          12                            53
  CLUS_4                           8                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.2) MUTATED       10     21     14
  DEL PEAK  7(3P14.2) WILD-TYPE     40     68     63
D31V2, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          10                            40
  CLUS_2                          21                            68
  CLUS_3                          14                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P14.2) MUTATED       32     58     24      5
  DEL PEAK  7(3P14.2) WILD-TYPE    183    189    108     17
D31V3, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          32                           183
  CLUS_2                          58                           189
  CLUS_3                          24                           108
  CLUS_4                           5                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.2) MUTATED       22     25     28
  DEL PEAK  7(3P14.2) WILD-TYPE     95    104    116
D31V4, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          22                            95
  CLUS_2                          25                           104
  CLUS_3                          28                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.2) MUTATED       18     31     38
  DEL PEAK  7(3P14.2) WILD-TYPE     90    166    139
D31V5, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          18                            90
  CLUS_2                          31                           166
  CLUS_3                          38                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P14.2) MUTATED       42     27     18
  DEL PEAK  7(3P14.2) WILD-TYPE    186    141     68
D31V6, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          42                           186
  CLUS_2                          27                           141
  CLUS_3                          18                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P14.2) MUTATED       35     19     26     39
  DEL PEAK  7(3P14.2) WILD-TYPE    121    109    105    159
D31V7, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          35                           121
  CLUS_2                          19                           109
  CLUS_3                          26                           105
  CLUS_4                          39                           159
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P14.2) MUTATED       15     16      9     14     17     30
  DEL PEAK  7(3P14.2) WILD-TYPE     65     70     55     43     73    108
                               vv
clus                            CLUS_7
  DEL PEAK  7(3P14.2) MUTATED       18
  DEL PEAK  7(3P14.2) WILD-TYPE     80
D31V8, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          15                            65
  CLUS_2                          16                            70
  CLUS_3                           9                            55
  CLUS_4                          14                            43
  CLUS_5                          17                            73
  CLUS_6                          30                           108
  CLUS_7                          18                            80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P14.2) MUTATED       30     15     17     39
  DEL PEAK  7(3P14.2) WILD-TYPE    123     80     69    166
D31V9, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          30                           123
  CLUS_2                          15                            80
  CLUS_3                          17                            69
  CLUS_4                          39                           166
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P14.2) MUTATED        9     10      3     19     11     10
  DEL PEAK  7(3P14.2) WILD-TYPE     40     64     26     67     66     44
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  7(3P14.2) MUTATED       12      9     18
  DEL PEAK  7(3P14.2) WILD-TYPE     45     23     63
D31V10, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                           9                            40
  CLUS_2                          10                            64
  CLUS_3                           3                            26
  CLUS_4                          19                            67
  CLUS_5                          11                            66
  CLUS_6                          10                            44
  CLUS_7                          12                            45
  CLUS_8                           9                            23
  CLUS_9                          18                            63
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P14.2) MUTATED        4      9      6      8
  DEL PEAK  7(3P14.2) WILD-TYPE     31     31     32     14
D31V11, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                           4                            31
  CLUS_2                           9                            31
  CLUS_3                           6                            32
  CLUS_4                           8                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P14.2) MUTATED       13      2      5      7
  DEL PEAK  7(3P14.2) WILD-TYPE     50     14     29     15
D31V12, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          13                            50
  CLUS_2                           2                            14
  CLUS_3                           5                            29
  CLUS_4                           7                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  8(3Q26.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q26.31) MUTATED        3      9      6      3
  DEL PEAK  8(3Q26.31) WILD-TYPE     42     54     59     40
D32V1, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            3                             42
  CLUS_2                            9                             54
  CLUS_3                            6                             59
  CLUS_4                            3                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q26.31) MUTATED        3      9      9
  DEL PEAK  8(3Q26.31) WILD-TYPE     47     80     68
D32V2, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            3                             47
  CLUS_2                            9                             80
  CLUS_3                            9                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q26.31) MUTATED       17     35     10      3
  DEL PEAK  8(3Q26.31) WILD-TYPE    198    212    122     19
D32V3, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                           17                            198
  CLUS_2                           35                            212
  CLUS_3                           10                            122
  CLUS_4                            3                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q26.31) MUTATED       15     11     17
  DEL PEAK  8(3Q26.31) WILD-TYPE    102    118    127
D32V4, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                           15                            102
  CLUS_2                           11                            118
  CLUS_3                           17                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q26.31) MUTATED       11     20     22
  DEL PEAK  8(3Q26.31) WILD-TYPE     97    177    155
D32V5, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                           11                             97
  CLUS_2                           20                            177
  CLUS_3                           22                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q26.31) MUTATED       27     17      9
  DEL PEAK  8(3Q26.31) WILD-TYPE    201    151     77
D32V6, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                           27                            201
  CLUS_2                           17                            151
  CLUS_3                            9                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q26.31) MUTATED       20     12     13     20
  DEL PEAK  8(3Q26.31) WILD-TYPE    136    116    118    178
D32V7, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                           20                            136
  CLUS_2                           12                            116
  CLUS_3                           13                            118
  CLUS_4                           20                            178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3Q26.31) MUTATED       13      9      4      9      6     17
  DEL PEAK  8(3Q26.31) WILD-TYPE     67     77     60     48     84    121
                                vv
clus                             CLUS_7
  DEL PEAK  8(3Q26.31) MUTATED        7
  DEL PEAK  8(3Q26.31) WILD-TYPE     91
D32V8, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                           13                             67
  CLUS_2                            9                             77
  CLUS_3                            4                             60
  CLUS_4                            9                             48
  CLUS_5                            6                             84
  CLUS_6                           17                            121
  CLUS_7                            7                             91
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q26.31) MUTATED       20      9     10     16
  DEL PEAK  8(3Q26.31) WILD-TYPE    133     86     76    189
D32V9, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                           20                            133
  CLUS_2                            9                             86
  CLUS_3                           10                             76
  CLUS_4                           16                            189
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3Q26.31) MUTATED        4      6      0     15      7      4
  DEL PEAK  8(3Q26.31) WILD-TYPE     45     68     29     71     70     50
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  8(3Q26.31) MUTATED        7      4      8
  DEL PEAK  8(3Q26.31) WILD-TYPE     50     28     73
D32V10, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            4                             45
  CLUS_2                            6                             68
  CLUS_3                            0                             29
  CLUS_4                           15                             71
  CLUS_5                            7                             70
  CLUS_6                            4                             50
  CLUS_7                            7                             50
  CLUS_8                            4                             28
  CLUS_9                            8                             73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q26.31) MUTATED        2      3      5      6
  DEL PEAK  8(3Q26.31) WILD-TYPE     33     37     33     16
D32V11, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            2                             33
  CLUS_2                            3                             37
  CLUS_3                            5                             33
  CLUS_4                            6                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q26.31) MUTATED        6      1      5      4
  DEL PEAK  8(3Q26.31) WILD-TYPE     57     15     29     18
D32V12, multiclass
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  CLUS_1                            6                             57
  CLUS_2                            1                             15
  CLUS_3                            5                             29
  CLUS_4                            4                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  9(4P16.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P16.1) MUTATED       13     26     27      9
  DEL PEAK  9(4P16.1) WILD-TYPE     32     37     38     34
D33V1, multiclass
        clus
vv       DEL PEAK  9(4P16.1) MUTATED DEL PEAK  9(4P16.1) WILD-TYPE
  CLUS_1                          13                            32
  CLUS_2                          26                            37
  CLUS_3                          27                            38
  CLUS_4                           9                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P16.1) MUTATED       11     43     21
  DEL PEAK  9(4P16.1) WILD-TYPE     39     46     56
D33V2, multiclass
        clus
vv       DEL PEAK  9(4P16.1) MUTATED DEL PEAK  9(4P16.1) WILD-TYPE
  CLUS_1                          11                            39
  CLUS_2                          43                            46
  CLUS_3                          21                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P16.1) MUTATED       23    111     52     17
  DEL PEAK  9(4P16.1) WILD-TYPE    192    136     80      5
D33V3, multiclass
        clus
vv       DEL PEAK  9(4P16.1) MUTATED DEL PEAK  9(4P16.1) WILD-TYPE
  CLUS_1                          23                           192
  CLUS_2                         111                           136
  CLUS_3                          52                            80
  CLUS_4                          17                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P16.1) MUTATED       36     55     35
  DEL PEAK  9(4P16.1) WILD-TYPE     81     74    109
D33V4, multiclass
        clus
vv       DEL PEAK  9(4P16.1) MUTATED DEL PEAK  9(4P16.1) WILD-TYPE
  CLUS_1                          36                            81
  CLUS_2                          55                            74
  CLUS_3                          35                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P16.1) MUTATED       32     63     49
  DEL PEAK  9(4P16.1) WILD-TYPE     76    134    128
D33V5, multiclass
        clus
vv       DEL PEAK  9(4P16.1) MUTATED DEL PEAK  9(4P16.1) WILD-TYPE
  CLUS_1                          32                            76
  CLUS_2                          63                           134
  CLUS_3                          49                           128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P16.1) MUTATED       64     50     30
  DEL PEAK  9(4P16.1) WILD-TYPE    164    118     56
D33V6, multiclass
        clus
vv       DEL PEAK  9(4P16.1) MUTATED DEL PEAK  9(4P16.1) WILD-TYPE
  CLUS_1                          64                           164
  CLUS_2                          50                           118
  CLUS_3                          30                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P16.1) MUTATED       60     27     48     67
  DEL PEAK  9(4P16.1) WILD-TYPE     96    101     83    131
D33V7, multiclass
        clus
vv       DEL PEAK  9(4P16.1) MUTATED DEL PEAK  9(4P16.1) WILD-TYPE
  CLUS_1                          60                            96
  CLUS_2                          27                           101
  CLUS_3                          48                            83
  CLUS_4                          67                           131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4P16.1) MUTATED       29     25      5     19     41     58
  DEL PEAK  9(4P16.1) WILD-TYPE     51     61     59     38     49     80
                               vv
clus                            CLUS_7
  DEL PEAK  9(4P16.1) MUTATED       25
  DEL PEAK  9(4P16.1) WILD-TYPE     73
D33V8, multiclass
        clus
vv       DEL PEAK  9(4P16.1) MUTATED DEL PEAK  9(4P16.1) WILD-TYPE
  CLUS_1                          29                            51
  CLUS_2                          25                            61
  CLUS_3                           5                            59
  CLUS_4                          19                            38
  CLUS_5                          41                            49
  CLUS_6                          58                            80
  CLUS_7                          25                            73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P16.1) MUTATED       48     32     34     61
  DEL PEAK  9(4P16.1) WILD-TYPE    105     63     52    144
D33V9, multiclass
        clus
vv       DEL PEAK  9(4P16.1) MUTATED DEL PEAK  9(4P16.1) WILD-TYPE
  CLUS_1                          48                           105
  CLUS_2                          32                            63
  CLUS_3                          34                            52
  CLUS_4                          61                           144
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4P16.1) MUTATED       17     18      9     33     14     14
  DEL PEAK  9(4P16.1) WILD-TYPE     32     56     20     53     63     40
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  9(4P16.1) MUTATED       21     12     37
  DEL PEAK  9(4P16.1) WILD-TYPE     36     20     44
D33V10, multiclass
        clus
vv       DEL PEAK  9(4P16.1) MUTATED DEL PEAK  9(4P16.1) WILD-TYPE
  CLUS_1                          17                            32
  CLUS_2                          18                            56
  CLUS_3                           9                            20
  CLUS_4                          33                            53
  CLUS_5                          14                            63
  CLUS_6                          14                            40
  CLUS_7                          21                            36
  CLUS_8                          12                            20
  CLUS_9                          37                            44
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P16.1) MUTATED       15     14     15      5
  DEL PEAK  9(4P16.1) WILD-TYPE     20     26     23     17
D33V11, multiclass
        clus
vv       DEL PEAK  9(4P16.1) MUTATED DEL PEAK  9(4P16.1) WILD-TYPE
  CLUS_1                          15                            20
  CLUS_2                          14                            26
  CLUS_3                          15                            23
  CLUS_4                           5                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P16.1) MUTATED       22      5     13      9
  DEL PEAK  9(4P16.1) WILD-TYPE     41     11     21     13
D33V12, multiclass
        clus
vv       DEL PEAK  9(4P16.1) MUTATED DEL PEAK  9(4P16.1) WILD-TYPE
  CLUS_1                          22                            41
  CLUS_2                           5                            11
  CLUS_3                          13                            21
  CLUS_4                           9                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 10(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED       14     27     30      7
  DEL PEAK 10(4Q22.1) WILD-TYPE     31     36     35     36
D34V1, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          14                            31
  CLUS_2                          27                            36
  CLUS_3                          30                            35
  CLUS_4                           7                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       11     43     24
  DEL PEAK 10(4Q22.1) WILD-TYPE     39     46     53
D34V2, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          11                            39
  CLUS_2                          43                            46
  CLUS_3                          24                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED       28    126     55     16
  DEL PEAK 10(4Q22.1) WILD-TYPE    187    121     77      6
D34V3, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          28                           187
  CLUS_2                         126                           121
  CLUS_3                          55                            77
  CLUS_4                          16                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       47     59     41
  DEL PEAK 10(4Q22.1) WILD-TYPE     70     70    103
D34V4, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          47                            70
  CLUS_2                          59                            70
  CLUS_3                          41                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       42     66     58
  DEL PEAK 10(4Q22.1) WILD-TYPE     66    131    119
D34V5, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          42                            66
  CLUS_2                          66                           131
  CLUS_3                          58                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       75     54     37
  DEL PEAK 10(4Q22.1) WILD-TYPE    153    114     49
D34V6, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          75                           153
  CLUS_2                          54                           114
  CLUS_3                          37                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED       69     31     49     75
  DEL PEAK 10(4Q22.1) WILD-TYPE     87     97     82    123
D34V7, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          69                            87
  CLUS_2                          31                            97
  CLUS_3                          49                            82
  CLUS_4                          75                           123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q22.1) MUTATED       36     25      8     27     40     61
  DEL PEAK 10(4Q22.1) WILD-TYPE     44     61     56     30     50     77
                               vv
clus                            CLUS_7
  DEL PEAK 10(4Q22.1) MUTATED       27
  DEL PEAK 10(4Q22.1) WILD-TYPE     71
D34V8, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          36                            44
  CLUS_2                          25                            61
  CLUS_3                           8                            56
  CLUS_4                          27                            30
  CLUS_5                          40                            50
  CLUS_6                          61                            77
  CLUS_7                          27                            71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED       53     32     40     70
  DEL PEAK 10(4Q22.1) WILD-TYPE    100     63     46    135
D34V9, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          53                           100
  CLUS_2                          32                            63
  CLUS_3                          40                            46
  CLUS_4                          70                           135
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q22.1) MUTATED       18     18      9     39     15     19
  DEL PEAK 10(4Q22.1) WILD-TYPE     31     56     20     47     62     35
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 10(4Q22.1) MUTATED       25     10     42
  DEL PEAK 10(4Q22.1) WILD-TYPE     32     22     39
D34V10, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          18                            31
  CLUS_2                          18                            56
  CLUS_3                           9                            20
  CLUS_4                          39                            47
  CLUS_5                          15                            62
  CLUS_6                          19                            35
  CLUS_7                          25                            32
  CLUS_8                          10                            22
  CLUS_9                          42                            39
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED       16     18     22      6
  DEL PEAK 10(4Q22.1) WILD-TYPE     19     22     16     16
D34V11, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          16                            19
  CLUS_2                          18                            22
  CLUS_3                          22                            16
  CLUS_4                           6                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED       24      7     18     13
  DEL PEAK 10(4Q22.1) WILD-TYPE     39      9     16      9
D34V12, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          24                            39
  CLUS_2                           7                             9
  CLUS_3                          18                            16
  CLUS_4                          13                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 11(4Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q35.1) MUTATED       13     29     29      8
  DEL PEAK 11(4Q35.1) WILD-TYPE     32     34     36     35
D35V1, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          13                            32
  CLUS_2                          29                            34
  CLUS_3                          29                            36
  CLUS_4                           8                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q35.1) MUTATED       12     43     24
  DEL PEAK 11(4Q35.1) WILD-TYPE     38     46     53
D35V2, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          12                            38
  CLUS_2                          43                            46
  CLUS_3                          24                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q35.1) MUTATED       26    129     61     17
  DEL PEAK 11(4Q35.1) WILD-TYPE    189    118     71      5
D35V3, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          26                           189
  CLUS_2                         129                           118
  CLUS_3                          61                            71
  CLUS_4                          17                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q35.1) MUTATED       48     60     42
  DEL PEAK 11(4Q35.1) WILD-TYPE     69     69    102
D35V4, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          48                            69
  CLUS_2                          60                            69
  CLUS_3                          42                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q35.1) MUTATED       39     68     68
  DEL PEAK 11(4Q35.1) WILD-TYPE     69    129    109
D35V5, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          39                            69
  CLUS_2                          68                           129
  CLUS_3                          68                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q35.1) MUTATED       87     53     35
  DEL PEAK 11(4Q35.1) WILD-TYPE    141    115     51
D35V6, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          87                           141
  CLUS_2                          53                           115
  CLUS_3                          35                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q35.1) MUTATED       69     32     55     76
  DEL PEAK 11(4Q35.1) WILD-TYPE     87     96     76    122
D35V7, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          69                            87
  CLUS_2                          32                            96
  CLUS_3                          55                            76
  CLUS_4                          76                           122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q35.1) MUTATED       38     26      8     26     44     61
  DEL PEAK 11(4Q35.1) WILD-TYPE     42     60     56     31     46     77
                               vv
clus                            CLUS_7
  DEL PEAK 11(4Q35.1) MUTATED       29
  DEL PEAK 11(4Q35.1) WILD-TYPE     69
D35V8, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          38                            42
  CLUS_2                          26                            60
  CLUS_3                           8                            56
  CLUS_4                          26                            31
  CLUS_5                          44                            46
  CLUS_6                          61                            77
  CLUS_7                          29                            69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q35.1) MUTATED       55     34     44     68
  DEL PEAK 11(4Q35.1) WILD-TYPE     98     61     42    137
D35V9, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          55                            98
  CLUS_2                          34                            61
  CLUS_3                          44                            42
  CLUS_4                          68                           137
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q35.1) MUTATED       20     24     11     38     17     20
  DEL PEAK 11(4Q35.1) WILD-TYPE     29     50     18     48     60     34
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 11(4Q35.1) MUTATED       24     11     36
  DEL PEAK 11(4Q35.1) WILD-TYPE     33     21     45
D35V10, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          20                            29
  CLUS_2                          24                            50
  CLUS_3                          11                            18
  CLUS_4                          38                            48
  CLUS_5                          17                            60
  CLUS_6                          20                            34
  CLUS_7                          24                            33
  CLUS_8                          11                            21
  CLUS_9                          36                            45
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q35.1) MUTATED       16     17     22     10
  DEL PEAK 11(4Q35.1) WILD-TYPE     19     23     16     12
D35V11, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          16                            19
  CLUS_2                          17                            23
  CLUS_3                          22                            16
  CLUS_4                          10                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q35.1) MUTATED       28      8     17     12
  DEL PEAK 11(4Q35.1) WILD-TYPE     35      8     17     10
D35V12, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          28                            35
  CLUS_2                           8                             8
  CLUS_3                          17                            17
  CLUS_4                          12                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 12(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q12.1) MUTATED       10     21     19      1
  DEL PEAK 12(5Q12.1) WILD-TYPE     35     42     46     42
D36V1, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          10                            35
  CLUS_2                          21                            42
  CLUS_3                          19                            46
  CLUS_4                           1                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED        9     36      6
  DEL PEAK 12(5Q12.1) WILD-TYPE     41     53     71
D36V2, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                           9                            41
  CLUS_2                          36                            53
  CLUS_3                           6                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q12.1) MUTATED       11     74     61     13
  DEL PEAK 12(5Q12.1) WILD-TYPE    204    173     71      9
D36V3, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          11                           204
  CLUS_2                          74                           173
  CLUS_3                          61                            71
  CLUS_4                          13                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       30     50     29
  DEL PEAK 12(5Q12.1) WILD-TYPE     87     79    115
D36V4, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          30                            87
  CLUS_2                          50                            79
  CLUS_3                          29                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       35     44     40
  DEL PEAK 12(5Q12.1) WILD-TYPE     73    153    137
D36V5, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          35                            73
  CLUS_2                          44                           153
  CLUS_3                          40                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q12.1) MUTATED       62     35     22
  DEL PEAK 12(5Q12.1) WILD-TYPE    166    133     64
D36V6, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          62                           166
  CLUS_2                          35                           133
  CLUS_3                          22                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q12.1) MUTATED       49     22     39     49
  DEL PEAK 12(5Q12.1) WILD-TYPE    107    106     92    149
D36V7, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          49                           107
  CLUS_2                          22                           106
  CLUS_3                          39                            92
  CLUS_4                          49                           149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(5Q12.1) MUTATED       25     19      4     21     32     43
  DEL PEAK 12(5Q12.1) WILD-TYPE     55     67     60     36     58     95
                               vv
clus                            CLUS_7
  DEL PEAK 12(5Q12.1) MUTATED       15
  DEL PEAK 12(5Q12.1) WILD-TYPE     83
D36V8, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          25                            55
  CLUS_2                          19                            67
  CLUS_3                           4                            60
  CLUS_4                          21                            36
  CLUS_5                          32                            58
  CLUS_6                          43                            95
  CLUS_7                          15                            83
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q12.1) MUTATED       40     27     27     43
  DEL PEAK 12(5Q12.1) WILD-TYPE    113     68     59    162
D36V9, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          40                           113
  CLUS_2                          27                            68
  CLUS_3                          27                            59
  CLUS_4                          43                           162
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(5Q12.1) MUTATED       12     17     12     31      8      5
  DEL PEAK 12(5Q12.1) WILD-TYPE     37     57     17     55     69     49
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 12(5Q12.1) MUTATED       16      9     27
  DEL PEAK 12(5Q12.1) WILD-TYPE     41     23     54
D36V10, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          12                            37
  CLUS_2                          17                            57
  CLUS_3                          12                            17
  CLUS_4                          31                            55
  CLUS_5                           8                            69
  CLUS_6                           5                            49
  CLUS_7                          16                            41
  CLUS_8                           9                            23
  CLUS_9                          27                            54
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q12.1) MUTATED       12     15     14      6
  DEL PEAK 12(5Q12.1) WILD-TYPE     23     25     24     16
D36V11, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          12                            23
  CLUS_2                          15                            25
  CLUS_3                          14                            24
  CLUS_4                           6                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q12.1) MUTATED       22      7     13      5
  DEL PEAK 12(5Q12.1) WILD-TYPE     41      9     21     17
D36V12, multiclass
        clus
vv       DEL PEAK 12(5Q12.1) MUTATED DEL PEAK 12(5Q12.1) WILD-TYPE
  CLUS_1                          22                            41
  CLUS_2                           7                             9
  CLUS_3                          13                            21
  CLUS_4                           5                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 13(5Q21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q21.2) MUTATED       10     23     23      6
  DEL PEAK 13(5Q21.2) WILD-TYPE     35     40     42     37
D37V1, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          10                            35
  CLUS_2                          23                            40
  CLUS_3                          23                            42
  CLUS_4                           6                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q21.2) MUTATED       10     38     14
  DEL PEAK 13(5Q21.2) WILD-TYPE     40     51     63
D37V2, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          10                            40
  CLUS_2                          38                            51
  CLUS_3                          14                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q21.2) MUTATED       17     84     72     14
  DEL PEAK 13(5Q21.2) WILD-TYPE    198    163     60      8
D37V3, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          17                           198
  CLUS_2                          84                           163
  CLUS_3                          72                            60
  CLUS_4                          14                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q21.2) MUTATED       34     54     37
  DEL PEAK 13(5Q21.2) WILD-TYPE     83     75    107
D37V4, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          34                            83
  CLUS_2                          54                            75
  CLUS_3                          37                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q21.2) MUTATED       40     56     45
  DEL PEAK 13(5Q21.2) WILD-TYPE     68    141    132
D37V5, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          40                            68
  CLUS_2                          56                           141
  CLUS_3                          45                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q21.2) MUTATED       71     43     27
  DEL PEAK 13(5Q21.2) WILD-TYPE    157    125     59
D37V6, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          71                           157
  CLUS_2                          43                           125
  CLUS_3                          27                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q21.2) MUTATED       55     31     40     60
  DEL PEAK 13(5Q21.2) WILD-TYPE    101     97     91    138
D37V7, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          55                           101
  CLUS_2                          31                            97
  CLUS_3                          40                            91
  CLUS_4                          60                           138
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(5Q21.2) MUTATED       28     24      8     20     34     51
  DEL PEAK 13(5Q21.2) WILD-TYPE     52     62     56     37     56     87
                               vv
clus                            CLUS_7
  DEL PEAK 13(5Q21.2) MUTATED       21
  DEL PEAK 13(5Q21.2) WILD-TYPE     77
D37V8, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          28                            52
  CLUS_2                          24                            62
  CLUS_3                           8                            56
  CLUS_4                          20                            37
  CLUS_5                          34                            56
  CLUS_6                          51                            87
  CLUS_7                          21                            77
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q21.2) MUTATED       50     31     30     53
  DEL PEAK 13(5Q21.2) WILD-TYPE    103     64     56    152
D37V9, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          50                           103
  CLUS_2                          31                            64
  CLUS_3                          30                            56
  CLUS_4                          53                           152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(5Q21.2) MUTATED       15     18     13     34     10     11
  DEL PEAK 13(5Q21.2) WILD-TYPE     34     56     16     52     67     43
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 13(5Q21.2) MUTATED       21     13     29
  DEL PEAK 13(5Q21.2) WILD-TYPE     36     19     52
D37V10, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          15                            34
  CLUS_2                          18                            56
  CLUS_3                          13                            16
  CLUS_4                          34                            52
  CLUS_5                          10                            67
  CLUS_6                          11                            43
  CLUS_7                          21                            36
  CLUS_8                          13                            19
  CLUS_9                          29                            52
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q21.2) MUTATED       14     14     15      5
  DEL PEAK 13(5Q21.2) WILD-TYPE     21     26     23     17
D37V11, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          14                            21
  CLUS_2                          14                            26
  CLUS_3                          15                            23
  CLUS_4                           5                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q21.2) MUTATED       23      6     12      7
  DEL PEAK 13(5Q21.2) WILD-TYPE     40     10     22     15
D37V12, multiclass
        clus
vv       DEL PEAK 13(5Q21.2) MUTATED DEL PEAK 13(5Q21.2) WILD-TYPE
  CLUS_1                          23                            40
  CLUS_2                           6                            10
  CLUS_3                          12                            22
  CLUS_4                           7                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 14(5Q22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q22.2) MUTATED        9     24     25      3
  DEL PEAK 14(5Q22.2) WILD-TYPE     36     39     40     40
D38V1, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                           9                            36
  CLUS_2                          24                            39
  CLUS_3                          25                            40
  CLUS_4                           3                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q22.2) MUTATED        9     40     12
  DEL PEAK 14(5Q22.2) WILD-TYPE     41     49     65
D38V2, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                           9                            41
  CLUS_2                          40                            49
  CLUS_3                          12                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q22.2) MUTATED       22     85     68     14
  DEL PEAK 14(5Q22.2) WILD-TYPE    193    162     64      8
D38V3, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          22                           193
  CLUS_2                          85                           162
  CLUS_3                          68                            64
  CLUS_4                          14                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q22.2) MUTATED       36     53     39
  DEL PEAK 14(5Q22.2) WILD-TYPE     81     76    105
D38V4, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          36                            81
  CLUS_2                          53                            76
  CLUS_3                          39                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q22.2) MUTATED       40     57     47
  DEL PEAK 14(5Q22.2) WILD-TYPE     68    140    130
D38V5, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          40                            68
  CLUS_2                          57                           140
  CLUS_3                          47                           130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q22.2) MUTATED       71     44     29
  DEL PEAK 14(5Q22.2) WILD-TYPE    157    124     57
D38V6, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          71                           157
  CLUS_2                          44                           124
  CLUS_3                          29                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q22.2) MUTATED       60     31     38     59
  DEL PEAK 14(5Q22.2) WILD-TYPE     96     97     93    139
D38V7, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          60                            96
  CLUS_2                          31                            97
  CLUS_3                          38                            93
  CLUS_4                          59                           139
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(5Q22.2) MUTATED       32     25      8     22     30     53
  DEL PEAK 14(5Q22.2) WILD-TYPE     48     61     56     35     60     85
                               vv
clus                            CLUS_7
  DEL PEAK 14(5Q22.2) MUTATED       18
  DEL PEAK 14(5Q22.2) WILD-TYPE     80
D38V8, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          32                            48
  CLUS_2                          25                            61
  CLUS_3                           8                            56
  CLUS_4                          22                            35
  CLUS_5                          30                            60
  CLUS_6                          53                            85
  CLUS_7                          18                            80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q22.2) MUTATED       51     30     32     54
  DEL PEAK 14(5Q22.2) WILD-TYPE    102     65     54    151
D38V9, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          51                           102
  CLUS_2                          30                            65
  CLUS_3                          32                            54
  CLUS_4                          54                           151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(5Q22.2) MUTATED       16     16     13     37     10     13
  DEL PEAK 14(5Q22.2) WILD-TYPE     33     58     16     49     67     41
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 14(5Q22.2) MUTATED       21     13     28
  DEL PEAK 14(5Q22.2) WILD-TYPE     36     19     53
D38V10, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          16                            33
  CLUS_2                          16                            58
  CLUS_3                          13                            16
  CLUS_4                          37                            49
  CLUS_5                          10                            67
  CLUS_6                          13                            41
  CLUS_7                          21                            36
  CLUS_8                          13                            19
  CLUS_9                          28                            53
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q22.2) MUTATED       14     14     17      6
  DEL PEAK 14(5Q22.2) WILD-TYPE     21     26     21     16
D38V11, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          14                            21
  CLUS_2                          14                            26
  CLUS_3                          17                            21
  CLUS_4                           6                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q22.2) MUTATED       23      6     14      8
  DEL PEAK 14(5Q22.2) WILD-TYPE     40     10     20     14
D38V12, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          23                            40
  CLUS_2                           6                            10
  CLUS_3                          14                            20
  CLUS_4                           8                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 15(5Q23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q23.3) MUTATED        9     21     19      3
  DEL PEAK 15(5Q23.3) WILD-TYPE     36     42     46     40
D39V1, multiclass
        clus
vv       DEL PEAK 15(5Q23.3) MUTATED DEL PEAK 15(5Q23.3) WILD-TYPE
  CLUS_1                           9                            36
  CLUS_2                          21                            42
  CLUS_3                          19                            46
  CLUS_4                           3                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q23.3) MUTATED        9     35      8
  DEL PEAK 15(5Q23.3) WILD-TYPE     41     54     69
D39V2, multiclass
        clus
vv       DEL PEAK 15(5Q23.3) MUTATED DEL PEAK 15(5Q23.3) WILD-TYPE
  CLUS_1                           9                            41
  CLUS_2                          35                            54
  CLUS_3                           8                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q23.3) MUTATED       10     72     67     12
  DEL PEAK 15(5Q23.3) WILD-TYPE    205    175     65     10
D39V3, multiclass
        clus
vv       DEL PEAK 15(5Q23.3) MUTATED DEL PEAK 15(5Q23.3) WILD-TYPE
  CLUS_1                          10                           205
  CLUS_2                          72                           175
  CLUS_3                          67                            65
  CLUS_4                          12                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q23.3) MUTATED       33     49     28
  DEL PEAK 15(5Q23.3) WILD-TYPE     84     80    116
D39V4, multiclass
        clus
vv       DEL PEAK 15(5Q23.3) MUTATED DEL PEAK 15(5Q23.3) WILD-TYPE
  CLUS_1                          33                            84
  CLUS_2                          49                            80
  CLUS_3                          28                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q23.3) MUTATED       32     44     42
  DEL PEAK 15(5Q23.3) WILD-TYPE     76    153    135
D39V5, multiclass
        clus
vv       DEL PEAK 15(5Q23.3) MUTATED DEL PEAK 15(5Q23.3) WILD-TYPE
  CLUS_1                          32                            76
  CLUS_2                          44                           153
  CLUS_3                          42                           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q23.3) MUTATED       59     37     22
  DEL PEAK 15(5Q23.3) WILD-TYPE    169    131     64
D39V6, multiclass
        clus
vv       DEL PEAK 15(5Q23.3) MUTATED DEL PEAK 15(5Q23.3) WILD-TYPE
  CLUS_1                          59                           169
  CLUS_2                          37                           131
  CLUS_3                          22                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q23.3) MUTATED       54     22     35     50
  DEL PEAK 15(5Q23.3) WILD-TYPE    102    106     96    148
D39V7, multiclass
        clus
vv       DEL PEAK 15(5Q23.3) MUTATED DEL PEAK 15(5Q23.3) WILD-TYPE
  CLUS_1                          54                           102
  CLUS_2                          22                           106
  CLUS_3                          35                            96
  CLUS_4                          50                           148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(5Q23.3) MUTATED       28     16      6     22     28     43
  DEL PEAK 15(5Q23.3) WILD-TYPE     52     70     58     35     62     95
                               vv
clus                            CLUS_7
  DEL PEAK 15(5Q23.3) MUTATED       18
  DEL PEAK 15(5Q23.3) WILD-TYPE     80
D39V8, multiclass
        clus
vv       DEL PEAK 15(5Q23.3) MUTATED DEL PEAK 15(5Q23.3) WILD-TYPE
  CLUS_1                          28                            52
  CLUS_2                          16                            70
  CLUS_3                           6                            58
  CLUS_4                          22                            35
  CLUS_5                          28                            62
  CLUS_6                          43                            95
  CLUS_7                          18                            80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q23.3) MUTATED       42     26     28     45
  DEL PEAK 15(5Q23.3) WILD-TYPE    111     69     58    160
D39V9, multiclass
        clus
vv       DEL PEAK 15(5Q23.3) MUTATED DEL PEAK 15(5Q23.3) WILD-TYPE
  CLUS_1                          42                           111
  CLUS_2                          26                            69
  CLUS_3                          28                            58
  CLUS_4                          45                           160
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(5Q23.3) MUTATED       13     16     11     36      8      6
  DEL PEAK 15(5Q23.3) WILD-TYPE     36     58     18     50     69     48
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 15(5Q23.3) MUTATED       18     10     23
  DEL PEAK 15(5Q23.3) WILD-TYPE     39     22     58
D39V10, multiclass
        clus
vv       DEL PEAK 15(5Q23.3) MUTATED DEL PEAK 15(5Q23.3) WILD-TYPE
  CLUS_1                          13                            36
  CLUS_2                          16                            58
  CLUS_3                          11                            18
  CLUS_4                          36                            50
  CLUS_5                           8                            69
  CLUS_6                           6                            48
  CLUS_7                          18                            39
  CLUS_8                          10                            22
  CLUS_9                          23                            58
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q23.3) MUTATED       13     14     15      5
  DEL PEAK 15(5Q23.3) WILD-TYPE     22     26     23     17
D39V11, multiclass
        clus
vv       DEL PEAK 15(5Q23.3) MUTATED DEL PEAK 15(5Q23.3) WILD-TYPE
  CLUS_1                          13                            22
  CLUS_2                          14                            26
  CLUS_3                          15                            23
  CLUS_4                           5                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q23.3) MUTATED       23      6     11      7
  DEL PEAK 15(5Q23.3) WILD-TYPE     40     10     23     15
D39V12, multiclass
        clus
vv       DEL PEAK 15(5Q23.3) MUTATED DEL PEAK 15(5Q23.3) WILD-TYPE
  CLUS_1                          23                            40
  CLUS_2                           6                            10
  CLUS_3                          11                            23
  CLUS_4                           7                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 16(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6P25.3) MUTATED        5      8      9      8
  DEL PEAK 16(6P25.3) WILD-TYPE     40     55     56     35
D40V1, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                           5                            40
  CLUS_2                           8                            55
  CLUS_3                           9                            56
  CLUS_4                           8                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6P25.3) MUTATED        9      9     12
  DEL PEAK 16(6P25.3) WILD-TYPE     41     80     65
D40V2, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                           9                            41
  CLUS_2                           9                            80
  CLUS_3                          12                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6P25.3) MUTATED       25     27     24      4
  DEL PEAK 16(6P25.3) WILD-TYPE    190    220    108     18
D40V3, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          25                           190
  CLUS_2                          27                           220
  CLUS_3                          24                           108
  CLUS_4                           4                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6P25.3) MUTATED       15     17     15
  DEL PEAK 16(6P25.3) WILD-TYPE    102    112    129
D40V4, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          15                           102
  CLUS_2                          17                           112
  CLUS_3                          15                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6P25.3) MUTATED       15     23     18
  DEL PEAK 16(6P25.3) WILD-TYPE     93    174    159
D40V5, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          15                            93
  CLUS_2                          23                           174
  CLUS_3                          18                           159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6P25.3) MUTATED       24     19     13
  DEL PEAK 16(6P25.3) WILD-TYPE    204    149     73
D40V6, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          24                           204
  CLUS_2                          19                           149
  CLUS_3                          13                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6P25.3) MUTATED       23     11     18     28
  DEL PEAK 16(6P25.3) WILD-TYPE    133    117    113    170
D40V7, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          23                           133
  CLUS_2                          11                           117
  CLUS_3                          18                           113
  CLUS_4                          28                           170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(6P25.3) MUTATED       13      6      9      7     13     15
  DEL PEAK 16(6P25.3) WILD-TYPE     67     80     55     50     77    123
                               vv
clus                            CLUS_7
  DEL PEAK 16(6P25.3) MUTATED       17
  DEL PEAK 16(6P25.3) WILD-TYPE     81
D40V8, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          13                            67
  CLUS_2                           6                            80
  CLUS_3                           9                            55
  CLUS_4                           7                            50
  CLUS_5                          13                            77
  CLUS_6                          15                           123
  CLUS_7                          17                            81
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6P25.3) MUTATED       14     13     15     31
  DEL PEAK 16(6P25.3) WILD-TYPE    139     82     71    174
D40V9, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          14                           139
  CLUS_2                          13                            82
  CLUS_3                          15                            71
  CLUS_4                          31                           174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(6P25.3) MUTATED        4     14      2      8     10      8
  DEL PEAK 16(6P25.3) WILD-TYPE     45     60     27     78     67     46
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 16(6P25.3) MUTATED       12      5     10
  DEL PEAK 16(6P25.3) WILD-TYPE     45     27     71
D40V10, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                           4                            45
  CLUS_2                          14                            60
  CLUS_3                           2                            27
  CLUS_4                           8                            78
  CLUS_5                          10                            67
  CLUS_6                           8                            46
  CLUS_7                          12                            45
  CLUS_8                           5                            27
  CLUS_9                          10                            71
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6P25.3) MUTATED        6      2      6      2
  DEL PEAK 16(6P25.3) WILD-TYPE     29     38     32     20
D40V11, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                           6                            29
  CLUS_2                           2                            38
  CLUS_3                           6                            32
  CLUS_4                           2                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6P25.3) MUTATED        6      2      3      5
  DEL PEAK 16(6P25.3) WILD-TYPE     57     14     31     17
D40V12, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                           6                            57
  CLUS_2                           2                            14
  CLUS_3                           3                            31
  CLUS_4                           5                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 17(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED        6     13     13      9
  DEL PEAK 17(6Q26) WILD-TYPE     39     50     52     34
D41V1, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                         6                          39
  CLUS_2                        13                          50
  CLUS_3                        13                          52
  CLUS_4                         9                          34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED        8     16     17
  DEL PEAK 17(6Q26) WILD-TYPE     42     73     60
D41V2, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                         8                          42
  CLUS_2                        16                          73
  CLUS_3                        17                          60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED       25     42     20      5
  DEL PEAK 17(6Q26) WILD-TYPE    190    205    112     17
D41V3, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        25                         190
  CLUS_2                        42                         205
  CLUS_3                        20                         112
  CLUS_4                         5                          17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       17     13     19
  DEL PEAK 17(6Q26) WILD-TYPE    100    116    125
D41V4, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        17                         100
  CLUS_2                        13                         116
  CLUS_3                        19                         125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       27     26     17
  DEL PEAK 17(6Q26) WILD-TYPE     81    171    160
D41V5, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        27                          81
  CLUS_2                        26                         171
  CLUS_3                        17                         160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       35     18     17
  DEL PEAK 17(6Q26) WILD-TYPE    193    150     69
D41V6, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        35                         193
  CLUS_2                        18                         150
  CLUS_3                        17                          69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED       17     17     17     41
  DEL PEAK 17(6Q26) WILD-TYPE    139    111    114    157
D41V7, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        17                         139
  CLUS_2                        17                         111
  CLUS_3                        17                         114
  CLUS_4                        41                         157
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 17(6Q26) MUTATED        8      8      7      9     15     21     24
  DEL PEAK 17(6Q26) WILD-TYPE     72     78     57     48     75    117     74
D41V8, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                         8                          72
  CLUS_2                         8                          78
  CLUS_3                         7                          57
  CLUS_4                         9                          48
  CLUS_5                        15                          75
  CLUS_6                        21                         117
  CLUS_7                        24                          74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED       18     15     14     39
  DEL PEAK 17(6Q26) WILD-TYPE    135     80     72    166
D41V9, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        18                         135
  CLUS_2                        15                          80
  CLUS_3                        14                          72
  CLUS_4                        39                         166
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 17(6Q26) MUTATED        7     14      4     10     11      7     13
  DEL PEAK 17(6Q26) WILD-TYPE     42     60     25     76     66     47     44
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK 17(6Q26) MUTATED        5     15
  DEL PEAK 17(6Q26) WILD-TYPE     27     66
D41V10, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                         7                          42
  CLUS_2                        14                          60
  CLUS_3                         4                          25
  CLUS_4                        10                          76
  CLUS_5                        11                          66
  CLUS_6                         7                          47
  CLUS_7                        13                          44
  CLUS_8                         5                          27
  CLUS_9                        15                          66
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED        8      2      6      3
  DEL PEAK 17(6Q26) WILD-TYPE     27     38     32     19
D41V11, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                         8                          27
  CLUS_2                         2                          38
  CLUS_3                         6                          32
  CLUS_4                         3                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED        8      1      6      4
  DEL PEAK 17(6Q26) WILD-TYPE     55     15     28     18
D41V12, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                         8                          55
  CLUS_2                         1                          15
  CLUS_3                         6                          28
  CLUS_4                         4                          18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 18(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(7Q31.1) MUTATED        2      2      0      1
  DEL PEAK 18(7Q31.1) WILD-TYPE     43     61     65     42
D42V1, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           2                            43
  CLUS_2                           2                            61
  CLUS_3                           0                            65
  CLUS_4                           1                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(7Q31.1) MUTATED        1      3      1
  DEL PEAK 18(7Q31.1) WILD-TYPE     49     86     76
D42V2, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           1                            49
  CLUS_2                           3                            86
  CLUS_3                           1                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(7Q31.1) MUTATED        5      6      6      0
  DEL PEAK 18(7Q31.1) WILD-TYPE    210    241    126     22
D42V3, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           5                           210
  CLUS_2                           6                           241
  CLUS_3                           6                           126
  CLUS_4                           0                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(7Q31.1) MUTATED        3      4      4
  DEL PEAK 18(7Q31.1) WILD-TYPE    114    125    140
D42V4, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           3                           114
  CLUS_2                           4                           125
  CLUS_3                           4                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(7Q31.1) MUTATED        1      6      6
  DEL PEAK 18(7Q31.1) WILD-TYPE    107    191    171
D42V5, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           1                           107
  CLUS_2                           6                           191
  CLUS_3                           6                           171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(7Q31.1) MUTATED        6      4      3
  DEL PEAK 18(7Q31.1) WILD-TYPE    222    164     83
D42V6, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           6                           222
  CLUS_2                           4                           164
  CLUS_3                           3                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(7Q31.1) MUTATED        7      2      3      5
  DEL PEAK 18(7Q31.1) WILD-TYPE    149    126    128    193
D42V7, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           7                           149
  CLUS_2                           2                           126
  CLUS_3                           3                           128
  CLUS_4                           5                           193
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(7Q31.1) MUTATED        3      2      1      1      3      4
  DEL PEAK 18(7Q31.1) WILD-TYPE     77     84     63     56     87    134
                               vv
clus                            CLUS_7
  DEL PEAK 18(7Q31.1) MUTATED        3
  DEL PEAK 18(7Q31.1) WILD-TYPE     95
D42V8, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           3                            77
  CLUS_2                           2                            84
  CLUS_3                           1                            63
  CLUS_4                           1                            56
  CLUS_5                           3                            87
  CLUS_6                           4                           134
  CLUS_7                           3                            95
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(7Q31.1) MUTATED        7      1      2      6
  DEL PEAK 18(7Q31.1) WILD-TYPE    146     94     84    199
D42V9, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           7                           146
  CLUS_2                           1                            94
  CLUS_3                           2                            84
  CLUS_4                           6                           199
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(7Q31.1) MUTATED        3      0      1      3      2      1
  DEL PEAK 18(7Q31.1) WILD-TYPE     46     74     28     83     75     53
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 18(7Q31.1) MUTATED        2      1      3
  DEL PEAK 18(7Q31.1) WILD-TYPE     55     31     78
D42V10, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           3                            46
  CLUS_2                           0                            74
  CLUS_3                           1                            28
  CLUS_4                           3                            83
  CLUS_5                           2                            75
  CLUS_6                           1                            53
  CLUS_7                           2                            55
  CLUS_8                           1                            31
  CLUS_9                           3                            78
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(7Q31.1) MUTATED        1      0      1      1
  DEL PEAK 18(7Q31.1) WILD-TYPE     34     40     37     21
D42V11, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           1                            34
  CLUS_2                           0                            40
  CLUS_3                           1                            37
  CLUS_4                           1                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(7Q31.1) MUTATED        1      0      1      1
  DEL PEAK 18(7Q31.1) WILD-TYPE     62     16     33     21
D42V12, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           1                            62
  CLUS_2                           0                            16
  CLUS_3                           1                            33
  CLUS_4                           1                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 19(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P23.2) MUTATED       17     42     37     11
  DEL PEAK 19(8P23.2) WILD-TYPE     28     21     28     32
D43V1, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                          17                            28
  CLUS_2                          42                            21
  CLUS_3                          37                            28
  CLUS_4                          11                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P23.2) MUTATED       14     59     34
  DEL PEAK 19(8P23.2) WILD-TYPE     36     30     43
D43V2, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                          14                            36
  CLUS_2                          59                            30
  CLUS_3                          34                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P23.2) MUTATED       23    152    105     10
  DEL PEAK 19(8P23.2) WILD-TYPE    192     95     27     12
D43V3, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                          23                           192
  CLUS_2                         152                            95
  CLUS_3                         105                            27
  CLUS_4                          10                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P23.2) MUTATED       48     83     51
  DEL PEAK 19(8P23.2) WILD-TYPE     69     46     93
D43V4, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                          48                            69
  CLUS_2                          83                            46
  CLUS_3                          51                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P23.2) MUTATED       44     94     81
  DEL PEAK 19(8P23.2) WILD-TYPE     64    103     96
D43V5, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                          44                            64
  CLUS_2                          94                           103
  CLUS_3                          81                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P23.2) MUTATED      106     74     39
  DEL PEAK 19(8P23.2) WILD-TYPE    122     94     47
D43V6, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                         106                           122
  CLUS_2                          74                            94
  CLUS_3                          39                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P23.2) MUTATED       87     37     66     99
  DEL PEAK 19(8P23.2) WILD-TYPE     69     91     65     99
D43V7, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                          87                            69
  CLUS_2                          37                            91
  CLUS_3                          66                            65
  CLUS_4                          99                            99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(8P23.2) MUTATED       38     33     10     31     59     83
  DEL PEAK 19(8P23.2) WILD-TYPE     42     53     54     26     31     55
                               vv
clus                            CLUS_7
  DEL PEAK 19(8P23.2) MUTATED       35
  DEL PEAK 19(8P23.2) WILD-TYPE     63
D43V8, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                          38                            42
  CLUS_2                          33                            53
  CLUS_3                          10                            54
  CLUS_4                          31                            26
  CLUS_5                          59                            31
  CLUS_6                          83                            55
  CLUS_7                          35                            63
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P23.2) MUTATED       66     45     52     92
  DEL PEAK 19(8P23.2) WILD-TYPE     87     50     34    113
D43V9, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                          66                            87
  CLUS_2                          45                            50
  CLUS_3                          52                            34
  CLUS_4                          92                           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(8P23.2) MUTATED       20     33     11     52     21     27
  DEL PEAK 19(8P23.2) WILD-TYPE     29     41     18     34     56     27
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 19(8P23.2) MUTATED       32     13     46
  DEL PEAK 19(8P23.2) WILD-TYPE     25     19     35
D43V10, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                          20                            29
  CLUS_2                          33                            41
  CLUS_3                          11                            18
  CLUS_4                          52                            34
  CLUS_5                          21                            56
  CLUS_6                          27                            27
  CLUS_7                          32                            25
  CLUS_8                          13                            19
  CLUS_9                          46                            35
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P23.2) MUTATED       20     20     23      7
  DEL PEAK 19(8P23.2) WILD-TYPE     15     20     15     15
D43V11, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                          20                            15
  CLUS_2                          20                            20
  CLUS_3                          23                            15
  CLUS_4                           7                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P23.2) MUTATED       29     11     18     12
  DEL PEAK 19(8P23.2) WILD-TYPE     34      5     16     10
D43V12, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                          29                            34
  CLUS_2                          11                             5
  CLUS_3                          18                            16
  CLUS_4                          12                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 20(8P22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8P22) MUTATED       16     40     40     13
  DEL PEAK 20(8P22) WILD-TYPE     29     23     25     30
D44V1, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        16                          29
  CLUS_2                        40                          23
  CLUS_3                        40                          25
  CLUS_4                        13                          30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8P22) MUTATED       13     59     37
  DEL PEAK 20(8P22) WILD-TYPE     37     30     40
D44V2, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        13                          37
  CLUS_2                        59                          30
  CLUS_3                        37                          40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8P22) MUTATED       25    157    111     11
  DEL PEAK 20(8P22) WILD-TYPE    190     90     21     11
D44V3, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        25                         190
  CLUS_2                       157                          90
  CLUS_3                       111                          21
  CLUS_4                        11                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8P22) MUTATED       51     87     56
  DEL PEAK 20(8P22) WILD-TYPE     66     42     88
D44V4, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        51                          66
  CLUS_2                        87                          42
  CLUS_3                        56                          88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8P22) MUTATED       52     95     85
  DEL PEAK 20(8P22) WILD-TYPE     56    102     92
D44V5, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        52                          56
  CLUS_2                        95                         102
  CLUS_3                        85                          92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8P22) MUTATED      110     79     43
  DEL PEAK 20(8P22) WILD-TYPE    118     89     43
D44V6, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                       110                         118
  CLUS_2                        79                          89
  CLUS_3                        43                          43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8P22) MUTATED       92     42     69    100
  DEL PEAK 20(8P22) WILD-TYPE     64     86     62     98
D44V7, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        92                          64
  CLUS_2                        42                          86
  CLUS_3                        69                          62
  CLUS_4                       100                          98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 20(8P22) MUTATED       39     39     10     32     62     85     36
  DEL PEAK 20(8P22) WILD-TYPE     41     47     54     25     28     53     62
D44V8, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        39                          41
  CLUS_2                        39                          47
  CLUS_3                        10                          54
  CLUS_4                        32                          25
  CLUS_5                        62                          28
  CLUS_6                        85                          53
  CLUS_7                        36                          62
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8P22) MUTATED       71     48     53     96
  DEL PEAK 20(8P22) WILD-TYPE     82     47     33    109
D44V9, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        71                          82
  CLUS_2                        48                          47
  CLUS_3                        53                          33
  CLUS_4                        96                         109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 20(8P22) MUTATED       20     36     15     55     20     28     33
  DEL PEAK 20(8P22) WILD-TYPE     29     38     14     31     57     26     24
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK 20(8P22) MUTATED       13     48
  DEL PEAK 20(8P22) WILD-TYPE     19     33
D44V10, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        20                          29
  CLUS_2                        36                          38
  CLUS_3                        15                          14
  CLUS_4                        55                          31
  CLUS_5                        20                          57
  CLUS_6                        28                          26
  CLUS_7                        33                          24
  CLUS_8                        13                          19
  CLUS_9                        48                          33
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8P22) MUTATED       19     22     23      7
  DEL PEAK 20(8P22) WILD-TYPE     16     18     15     15
D44V11, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        19                          16
  CLUS_2                        22                          18
  CLUS_3                        23                          15
  CLUS_4                         7                          15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8P22) MUTATED       29     11     18     13
  DEL PEAK 20(8P22) WILD-TYPE     34      5     16      9
D44V12, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        29                          34
  CLUS_2                        11                           5
  CLUS_3                        18                          16
  CLUS_4                        13                           9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 21(8Q11.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8Q11.1) MUTATED        4     10      8      3
  DEL PEAK 21(8Q11.1) WILD-TYPE     41     53     57     40
D45V1, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           4                            41
  CLUS_2                          10                            53
  CLUS_3                           8                            57
  CLUS_4                           3                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8Q11.1) MUTATED        4     14      7
  DEL PEAK 21(8Q11.1) WILD-TYPE     46     75     70
D45V2, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           4                            46
  CLUS_2                          14                            75
  CLUS_3                           7                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8Q11.1) MUTATED        8     30      6      3
  DEL PEAK 21(8Q11.1) WILD-TYPE    207    217    126     19
D45V3, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           8                           207
  CLUS_2                          30                           217
  CLUS_3                           6                           126
  CLUS_4                           3                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8Q11.1) MUTATED        7     11      6
  DEL PEAK 21(8Q11.1) WILD-TYPE    110    118    138
D45V4, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           7                           110
  CLUS_2                          11                           118
  CLUS_3                           6                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8Q11.1) MUTATED       10     18      9
  DEL PEAK 21(8Q11.1) WILD-TYPE     98    179    168
D45V5, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                          10                            98
  CLUS_2                          18                           179
  CLUS_3                           9                           168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8Q11.1) MUTATED       14     17      6
  DEL PEAK 21(8Q11.1) WILD-TYPE    214    151     80
D45V6, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                          14                           214
  CLUS_2                          17                           151
  CLUS_3                           6                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8Q11.1) MUTATED       12      5     10     19
  DEL PEAK 21(8Q11.1) WILD-TYPE    144    123    121    179
D45V7, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                          12                           144
  CLUS_2                           5                           123
  CLUS_3                          10                           121
  CLUS_4                          19                           179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(8Q11.1) MUTATED        5      4      2      2      7     14
  DEL PEAK 21(8Q11.1) WILD-TYPE     75     82     62     55     83    124
                               vv
clus                            CLUS_7
  DEL PEAK 21(8Q11.1) MUTATED       12
  DEL PEAK 21(8Q11.1) WILD-TYPE     86
D45V8, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           5                            75
  CLUS_2                           4                            82
  CLUS_3                           2                            62
  CLUS_4                           2                            55
  CLUS_5                           7                            83
  CLUS_6                          14                           124
  CLUS_7                          12                            86
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8Q11.1) MUTATED       11      7      5     21
  DEL PEAK 21(8Q11.1) WILD-TYPE    142     88     81    184
D45V9, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                          11                           142
  CLUS_2                           7                            88
  CLUS_3                           5                            81
  CLUS_4                          21                           184
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(8Q11.1) MUTATED        1      5      1      9      8      5
  DEL PEAK 21(8Q11.1) WILD-TYPE     48     69     28     77     69     49
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 21(8Q11.1) MUTATED        5      2      8
  DEL PEAK 21(8Q11.1) WILD-TYPE     52     30     73
D45V10, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           1                            48
  CLUS_2                           5                            69
  CLUS_3                           1                            28
  CLUS_4                           9                            77
  CLUS_5                           8                            69
  CLUS_6                           5                            49
  CLUS_7                           5                            52
  CLUS_8                           2                            30
  CLUS_9                           8                            73
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8Q11.1) MUTATED        3      3      3      1
  DEL PEAK 21(8Q11.1) WILD-TYPE     32     37     35     21
D45V11, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           3                            32
  CLUS_2                           3                            37
  CLUS_3                           3                            35
  CLUS_4                           1                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8Q11.1) MUTATED        5      0      4      1
  DEL PEAK 21(8Q11.1) WILD-TYPE     58     16     30     21
D45V12, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           5                            58
  CLUS_2                           0                            16
  CLUS_3                           4                            30
  CLUS_4                           1                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 22(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P21.3) MUTATED        4     11     10      4
  DEL PEAK 22(9P21.3) WILD-TYPE     41     52     55     39
D46V1, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                           4                            41
  CLUS_2                          11                            52
  CLUS_3                          10                            55
  CLUS_4                           4                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P21.3) MUTATED        4     16      9
  DEL PEAK 22(9P21.3) WILD-TYPE     46     73     68
D46V2, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                           4                            46
  CLUS_2                          16                            73
  CLUS_3                           9                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P21.3) MUTATED       14     49     21      4
  DEL PEAK 22(9P21.3) WILD-TYPE    201    198    111     18
D46V3, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          14                           201
  CLUS_2                          49                           198
  CLUS_3                          21                           111
  CLUS_4                           4                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P21.3) MUTATED       18     27     14
  DEL PEAK 22(9P21.3) WILD-TYPE     99    102    130
D46V4, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          18                            99
  CLUS_2                          27                           102
  CLUS_3                          14                           130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P21.3) MUTATED       15     28     22
  DEL PEAK 22(9P21.3) WILD-TYPE     93    169    155
D46V5, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          15                            93
  CLUS_2                          28                           169
  CLUS_3                          22                           155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P21.3) MUTATED       27     22     16
  DEL PEAK 22(9P21.3) WILD-TYPE    201    146     70
D46V6, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          27                           201
  CLUS_2                          22                           146
  CLUS_3                          16                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P21.3) MUTATED       32     14     21     21
  DEL PEAK 22(9P21.3) WILD-TYPE    124    114    110    177
D46V7, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          32                           124
  CLUS_2                          14                           114
  CLUS_3                          21                           110
  CLUS_4                          21                           177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(9P21.3) MUTATED       11     12      4     14     16     23
  DEL PEAK 22(9P21.3) WILD-TYPE     69     74     60     43     74    115
                               vv
clus                            CLUS_7
  DEL PEAK 22(9P21.3) MUTATED        8
  DEL PEAK 22(9P21.3) WILD-TYPE     90
D46V8, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          11                            69
  CLUS_2                          12                            74
  CLUS_3                           4                            60
  CLUS_4                          14                            43
  CLUS_5                          16                            74
  CLUS_6                          23                           115
  CLUS_7                           8                            90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P21.3) MUTATED       22     12     19     25
  DEL PEAK 22(9P21.3) WILD-TYPE    131     83     67    180
D46V9, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          22                           131
  CLUS_2                          12                            83
  CLUS_3                          19                            67
  CLUS_4                          25                           180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(9P21.3) MUTATED        8     10      3     18      2      9
  DEL PEAK 22(9P21.3) WILD-TYPE     41     64     26     68     75     45
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 22(9P21.3) MUTATED       11      4     13
  DEL PEAK 22(9P21.3) WILD-TYPE     46     28     68
D46V10, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                           8                            41
  CLUS_2                          10                            64
  CLUS_3                           3                            26
  CLUS_4                          18                            68
  CLUS_5                           2                            75
  CLUS_6                           9                            45
  CLUS_7                          11                            46
  CLUS_8                           4                            28
  CLUS_9                          13                            68
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P21.3) MUTATED        8      8      7      2
  DEL PEAK 22(9P21.3) WILD-TYPE     27     32     31     20
D46V11, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                           8                            27
  CLUS_2                           8                            32
  CLUS_3                           7                            31
  CLUS_4                           2                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P21.3) MUTATED        9      3      7      6
  DEL PEAK 22(9P21.3) WILD-TYPE     54     13     27     16
D46V12, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                           9                            54
  CLUS_2                           3                            13
  CLUS_3                           7                            27
  CLUS_4                           6                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 23(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10P15.3) MUTATED        5      9     18      5
  DEL PEAK 23(10P15.3) WILD-TYPE     40     54     47     38
D47V1, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                            5                             40
  CLUS_2                            9                             54
  CLUS_3                           18                             47
  CLUS_4                            5                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10P15.3) MUTATED        5     18     14
  DEL PEAK 23(10P15.3) WILD-TYPE     45     71     63
D47V2, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                            5                             45
  CLUS_2                           18                             71
  CLUS_3                           14                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10P15.3) MUTATED       14     52     40      9
  DEL PEAK 23(10P15.3) WILD-TYPE    201    195     92     13
D47V3, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           14                            201
  CLUS_2                           52                            195
  CLUS_3                           40                             92
  CLUS_4                            9                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10P15.3) MUTATED       23     34     20
  DEL PEAK 23(10P15.3) WILD-TYPE     94     95    124
D47V4, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           23                             94
  CLUS_2                           34                             95
  CLUS_3                           20                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10P15.3) MUTATED       23     37     29
  DEL PEAK 23(10P15.3) WILD-TYPE     85    160    148
D47V5, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           23                             85
  CLUS_2                           37                            160
  CLUS_3                           29                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10P15.3) MUTATED       44     28     17
  DEL PEAK 23(10P15.3) WILD-TYPE    184    140     69
D47V6, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           44                            184
  CLUS_2                           28                            140
  CLUS_3                           17                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10P15.3) MUTATED       41     14     25     34
  DEL PEAK 23(10P15.3) WILD-TYPE    115    114    106    164
D47V7, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           41                            115
  CLUS_2                           14                            114
  CLUS_3                           25                            106
  CLUS_4                           34                            164
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(10P15.3) MUTATED       14     12      3     11     33     29
  DEL PEAK 23(10P15.3) WILD-TYPE     66     74     61     46     57    109
                                vv
clus                             CLUS_7
  DEL PEAK 23(10P15.3) MUTATED       12
  DEL PEAK 23(10P15.3) WILD-TYPE     86
D47V8, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           14                             66
  CLUS_2                           12                             74
  CLUS_3                            3                             61
  CLUS_4                           11                             46
  CLUS_5                           33                             57
  CLUS_6                           29                            109
  CLUS_7                           12                             86
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10P15.3) MUTATED       27     21     18     33
  DEL PEAK 23(10P15.3) WILD-TYPE    126     74     68    172
D47V9, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           27                            126
  CLUS_2                           21                             74
  CLUS_3                           18                             68
  CLUS_4                           33                            172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(10P15.3) MUTATED       10     15      7     19      7     10
  DEL PEAK 23(10P15.3) WILD-TYPE     39     59     22     67     70     44
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 23(10P15.3) MUTATED       11      2     18
  DEL PEAK 23(10P15.3) WILD-TYPE     46     30     63
D47V10, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           10                             39
  CLUS_2                           15                             59
  CLUS_3                            7                             22
  CLUS_4                           19                             67
  CLUS_5                            7                             70
  CLUS_6                           10                             44
  CLUS_7                           11                             46
  CLUS_8                            2                             30
  CLUS_9                           18                             63
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10P15.3) MUTATED        8     14      9      1
  DEL PEAK 23(10P15.3) WILD-TYPE     27     26     29     21
D47V11, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                            8                             27
  CLUS_2                           14                             26
  CLUS_3                            9                             29
  CLUS_4                            1                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10P15.3) MUTATED       15      8      5      4
  DEL PEAK 23(10P15.3) WILD-TYPE     48      8     29     18
D47V12, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           15                             48
  CLUS_2                            8                              8
  CLUS_3                            5                             29
  CLUS_4                            4                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 24(10Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q21.1) MUTATED        6     14     23      5
  DEL PEAK 24(10Q21.1) WILD-TYPE     39     49     42     38
D48V1, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                            6                             39
  CLUS_2                           14                             49
  CLUS_3                           23                             42
  CLUS_4                            5                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q21.1) MUTATED        6     27     15
  DEL PEAK 24(10Q21.1) WILD-TYPE     44     62     62
D48V2, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                            6                             44
  CLUS_2                           27                             62
  CLUS_3                           15                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q21.1) MUTATED       15     70     45      9
  DEL PEAK 24(10Q21.1) WILD-TYPE    200    177     87     13
D48V3, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           15                            200
  CLUS_2                           70                            177
  CLUS_3                           45                             87
  CLUS_4                            9                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q21.1) MUTATED       21     41     28
  DEL PEAK 24(10Q21.1) WILD-TYPE     96     88    116
D48V4, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           21                             96
  CLUS_2                           41                             88
  CLUS_3                           28                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q21.1) MUTATED       24     49     31
  DEL PEAK 24(10Q21.1) WILD-TYPE     84    148    146
D48V5, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           24                             84
  CLUS_2                           49                            148
  CLUS_3                           31                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q21.1) MUTATED       48     39     17
  DEL PEAK 24(10Q21.1) WILD-TYPE    180    129     69
D48V6, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           48                            180
  CLUS_2                           39                            129
  CLUS_3                           17                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q21.1) MUTATED       54     16     25     43
  DEL PEAK 24(10Q21.1) WILD-TYPE    102    112    106    155
D48V7, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           54                            102
  CLUS_2                           16                            112
  CLUS_3                           25                            106
  CLUS_4                           43                            155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(10Q21.1) MUTATED       20     18      3     13     30     38
  DEL PEAK 24(10Q21.1) WILD-TYPE     60     68     61     44     60    100
                                vv
clus                             CLUS_7
  DEL PEAK 24(10Q21.1) MUTATED       16
  DEL PEAK 24(10Q21.1) WILD-TYPE     82
D48V8, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           20                             60
  CLUS_2                           18                             68
  CLUS_3                            3                             61
  CLUS_4                           13                             44
  CLUS_5                           30                             60
  CLUS_6                           38                            100
  CLUS_7                           16                             82
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q21.1) MUTATED       34     23     22     40
  DEL PEAK 24(10Q21.1) WILD-TYPE    119     72     64    165
D48V9, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           34                            119
  CLUS_2                           23                             72
  CLUS_3                           22                             64
  CLUS_4                           40                            165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(10Q21.1) MUTATED       10     16      5     27      8     13
  DEL PEAK 24(10Q21.1) WILD-TYPE     39     58     24     59     69     41
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 24(10Q21.1) MUTATED       12      5     23
  DEL PEAK 24(10Q21.1) WILD-TYPE     45     27     58
D48V10, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           10                             39
  CLUS_2                           16                             58
  CLUS_3                            5                             24
  CLUS_4                           27                             59
  CLUS_5                            8                             69
  CLUS_6                           13                             41
  CLUS_7                           12                             45
  CLUS_8                            5                             27
  CLUS_9                           23                             58
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q21.1) MUTATED        8     11      8      2
  DEL PEAK 24(10Q21.1) WILD-TYPE     27     29     30     20
D48V11, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                            8                             27
  CLUS_2                           11                             29
  CLUS_3                            8                             30
  CLUS_4                            2                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q21.1) MUTATED       15      5      5      4
  DEL PEAK 24(10Q21.1) WILD-TYPE     48     11     29     18
D48V12, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           15                             48
  CLUS_2                            5                             11
  CLUS_3                            5                             29
  CLUS_4                            4                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 25(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q23.31) MUTATED        8     10     23      9
  DEL PEAK 25(10Q23.31) WILD-TYPE     37     53     42     34
D49V1, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                             8                              37
  CLUS_2                            10                              53
  CLUS_3                            23                              42
  CLUS_4                             9                              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q23.31) MUTATED        9     23     18
  DEL PEAK 25(10Q23.31) WILD-TYPE     41     66     59
D49V2, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                             9                              41
  CLUS_2                            23                              66
  CLUS_3                            18                              59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q23.31) MUTATED       20     74     57     10
  DEL PEAK 25(10Q23.31) WILD-TYPE    195    173     75     12
D49V3, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            20                             195
  CLUS_2                            74                             173
  CLUS_3                            57                              75
  CLUS_4                            10                              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q23.31) MUTATED       25     48     36
  DEL PEAK 25(10Q23.31) WILD-TYPE     92     81    108
D49V4, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            25                              92
  CLUS_2                            48                              81
  CLUS_3                            36                             108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q23.31) MUTATED       27     54     43
  DEL PEAK 25(10Q23.31) WILD-TYPE     81    143    134
D49V5, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            27                              81
  CLUS_2                            54                             143
  CLUS_3                            43                             134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q23.31) MUTATED       59     45     20
  DEL PEAK 25(10Q23.31) WILD-TYPE    169    123     66
D49V6, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            59                             169
  CLUS_2                            45                             123
  CLUS_3                            20                              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q23.31) MUTATED       57     25     33     44
  DEL PEAK 25(10Q23.31) WILD-TYPE     99    103     98    154
D49V7, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            57                              99
  CLUS_2                            25                             103
  CLUS_3                            33                              98
  CLUS_4                            44                             154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(10Q23.31) MUTATED       27     21      4     13     38     33
  DEL PEAK 25(10Q23.31) WILD-TYPE     53     65     60     44     52    105
                                 vv
clus                              CLUS_7
  DEL PEAK 25(10Q23.31) MUTATED       23
  DEL PEAK 25(10Q23.31) WILD-TYPE     75
D49V8, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            27                              53
  CLUS_2                            21                              65
  CLUS_3                             4                              60
  CLUS_4                            13                              44
  CLUS_5                            38                              52
  CLUS_6                            33                             105
  CLUS_7                            23                              75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q23.31) MUTATED       38     30     26     46
  DEL PEAK 25(10Q23.31) WILD-TYPE    115     65     60    159
D49V9, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            38                             115
  CLUS_2                            30                              65
  CLUS_3                            26                              60
  CLUS_4                            46                             159
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(10Q23.31) MUTATED       11     24      6     33      9     12
  DEL PEAK 25(10Q23.31) WILD-TYPE     38     50     23     53     68     42
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 25(10Q23.31) MUTATED       15      6     24
  DEL PEAK 25(10Q23.31) WILD-TYPE     42     26     57
D49V10, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            11                              38
  CLUS_2                            24                              50
  CLUS_3                             6                              23
  CLUS_4                            33                              53
  CLUS_5                             9                              68
  CLUS_6                            12                              42
  CLUS_7                            15                              42
  CLUS_8                             6                              26
  CLUS_9                            24                              57
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q23.31) MUTATED       10     16     10      3
  DEL PEAK 25(10Q23.31) WILD-TYPE     25     24     28     19
D49V11, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            10                              25
  CLUS_2                            16                              24
  CLUS_3                            10                              28
  CLUS_4                             3                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q23.31) MUTATED       17      8      7      7
  DEL PEAK 25(10Q23.31) WILD-TYPE     46      8     27     15
D49V12, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            17                              46
  CLUS_2                             8                               8
  CLUS_3                             7                              27
  CLUS_4                             7                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 26(10Q25.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10Q25.2) MUTATED        8     13     22      9
  DEL PEAK 26(10Q25.2) WILD-TYPE     37     50     43     34
D50V1, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                            8                             37
  CLUS_2                           13                             50
  CLUS_3                           22                             43
  CLUS_4                            9                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10Q25.2) MUTATED        8     26     18
  DEL PEAK 26(10Q25.2) WILD-TYPE     42     63     59
D50V2, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                            8                             42
  CLUS_2                           26                             63
  CLUS_3                           18                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10Q25.2) MUTATED       20     73     52     12
  DEL PEAK 26(10Q25.2) WILD-TYPE    195    174     80     10
D50V3, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           20                            195
  CLUS_2                           73                            174
  CLUS_3                           52                             80
  CLUS_4                           12                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10Q25.2) MUTATED       23     45     34
  DEL PEAK 26(10Q25.2) WILD-TYPE     94     84    110
D50V4, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           23                             94
  CLUS_2                           45                             84
  CLUS_3                           34                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10Q25.2) MUTATED       34     51     39
  DEL PEAK 26(10Q25.2) WILD-TYPE     74    146    138
D50V5, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           34                             74
  CLUS_2                           51                            146
  CLUS_3                           39                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10Q25.2) MUTATED       57     44     23
  DEL PEAK 26(10Q25.2) WILD-TYPE    171    124     63
D50V6, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           57                            171
  CLUS_2                           44                            124
  CLUS_3                           23                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10Q25.2) MUTATED       53     19     33     50
  DEL PEAK 26(10Q25.2) WILD-TYPE    103    109     98    148
D50V7, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           53                            103
  CLUS_2                           19                            109
  CLUS_3                           33                             98
  CLUS_4                           50                            148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(10Q25.2) MUTATED       26     15      2     11     39     35
  DEL PEAK 26(10Q25.2) WILD-TYPE     54     71     62     46     51    103
                                vv
clus                             CLUS_7
  DEL PEAK 26(10Q25.2) MUTATED       27
  DEL PEAK 26(10Q25.2) WILD-TYPE     71
D50V8, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           26                             54
  CLUS_2                           15                             71
  CLUS_3                            2                             62
  CLUS_4                           11                             46
  CLUS_5                           39                             51
  CLUS_6                           35                            103
  CLUS_7                           27                             71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10Q25.2) MUTATED       34     30     24     48
  DEL PEAK 26(10Q25.2) WILD-TYPE    119     65     62    157
D50V9, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           34                            119
  CLUS_2                           30                             65
  CLUS_3                           24                             62
  CLUS_4                           48                            157
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(10Q25.2) MUTATED        9     21      6     32     10     10
  DEL PEAK 26(10Q25.2) WILD-TYPE     40     53     23     54     67     44
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 26(10Q25.2) MUTATED       14      8     26
  DEL PEAK 26(10Q25.2) WILD-TYPE     43     24     55
D50V10, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                            9                             40
  CLUS_2                           21                             53
  CLUS_3                            6                             23
  CLUS_4                           32                             54
  CLUS_5                           10                             67
  CLUS_6                           10                             44
  CLUS_7                           14                             43
  CLUS_8                            8                             24
  CLUS_9                           26                             55
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10Q25.2) MUTATED       11     15     11      4
  DEL PEAK 26(10Q25.2) WILD-TYPE     24     25     27     18
D50V11, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           11                             24
  CLUS_2                           15                             25
  CLUS_3                           11                             27
  CLUS_4                            4                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10Q25.2) MUTATED       18      8      9      6
  DEL PEAK 26(10Q25.2) WILD-TYPE     45      8     25     16
D50V12, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           18                             45
  CLUS_2                            8                              8
  CLUS_3                            9                             25
  CLUS_4                            6                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 27(11Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11Q22.3) MUTATED        6      9     16     10
  DEL PEAK 27(11Q22.3) WILD-TYPE     39     54     49     33
D51V1, multiclass
        clus
vv       DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE
  CLUS_1                            6                             39
  CLUS_2                            9                             54
  CLUS_3                           16                             49
  CLUS_4                           10                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11Q22.3) MUTATED        7     13     21
  DEL PEAK 27(11Q22.3) WILD-TYPE     43     76     56
D51V2, multiclass
        clus
vv       DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE
  CLUS_1                            7                             43
  CLUS_2                           13                             76
  CLUS_3                           21                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11Q22.3) MUTATED       25     58     24      4
  DEL PEAK 27(11Q22.3) WILD-TYPE    190    189    108     18
D51V3, multiclass
        clus
vv       DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE
  CLUS_1                           25                            190
  CLUS_2                           58                            189
  CLUS_3                           24                            108
  CLUS_4                            4                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11Q22.3) MUTATED       25     19     25
  DEL PEAK 27(11Q22.3) WILD-TYPE     92    110    119
D51V4, multiclass
        clus
vv       DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE
  CLUS_1                           25                             92
  CLUS_2                           19                            110
  CLUS_3                           25                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11Q22.3) MUTATED       22     34     27
  DEL PEAK 27(11Q22.3) WILD-TYPE     86    163    150
D51V5, multiclass
        clus
vv       DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE
  CLUS_1                           22                             86
  CLUS_2                           34                            163
  CLUS_3                           27                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11Q22.3) MUTATED       38     30     15
  DEL PEAK 27(11Q22.3) WILD-TYPE    190    138     71
D51V6, multiclass
        clus
vv       DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE
  CLUS_1                           38                            190
  CLUS_2                           30                            138
  CLUS_3                           15                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11Q22.3) MUTATED       26     22     21     41
  DEL PEAK 27(11Q22.3) WILD-TYPE    130    106    110    157
D51V7, multiclass
        clus
vv       DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE
  CLUS_1                           26                            130
  CLUS_2                           22                            106
  CLUS_3                           21                            110
  CLUS_4                           41                            157
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(11Q22.3) MUTATED       15     17      3     13     13     29
  DEL PEAK 27(11Q22.3) WILD-TYPE     65     69     61     44     77    109
                                vv
clus                             CLUS_7
  DEL PEAK 27(11Q22.3) MUTATED       20
  DEL PEAK 27(11Q22.3) WILD-TYPE     78
D51V8, multiclass
        clus
vv       DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE
  CLUS_1                           15                             65
  CLUS_2                           17                             69
  CLUS_3                            3                             61
  CLUS_4                           13                             44
  CLUS_5                           13                             77
  CLUS_6                           29                            109
  CLUS_7                           20                             78
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11Q22.3) MUTATED       22     19     23     37
  DEL PEAK 27(11Q22.3) WILD-TYPE    131     76     63    168
D51V9, multiclass
        clus
vv       DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE
  CLUS_1                           22                            131
  CLUS_2                           19                             76
  CLUS_3                           23                             63
  CLUS_4                           37                            168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(11Q22.3) MUTATED       11     11      5     13      7     10
  DEL PEAK 27(11Q22.3) WILD-TYPE     38     63     24     73     70     44
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 27(11Q22.3) MUTATED       13      7     24
  DEL PEAK 27(11Q22.3) WILD-TYPE     44     25     57
D51V10, multiclass
        clus
vv       DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE
  CLUS_1                           11                             38
  CLUS_2                           11                             63
  CLUS_3                            5                             24
  CLUS_4                           13                             73
  CLUS_5                            7                             70
  CLUS_6                           10                             44
  CLUS_7                           13                             44
  CLUS_8                            7                             25
  CLUS_9                           24                             57
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11Q22.3) MUTATED        4      6      7      6
  DEL PEAK 27(11Q22.3) WILD-TYPE     31     34     31     16
D51V11, multiclass
        clus
vv       DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE
  CLUS_1                            4                             31
  CLUS_2                            6                             34
  CLUS_3                            7                             31
  CLUS_4                            6                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11Q22.3) MUTATED       13      1      6      3
  DEL PEAK 27(11Q22.3) WILD-TYPE     50     15     28     19
D51V12, multiclass
        clus
vv       DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE
  CLUS_1                           13                             50
  CLUS_2                            1                             15
  CLUS_3                            6                             28
  CLUS_4                            3                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 28(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12P13.1) MUTATED        2     14     11      1
  DEL PEAK 28(12P13.1) WILD-TYPE     43     49     54     42
D52V1, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                            2                             43
  CLUS_2                           14                             49
  CLUS_3                           11                             54
  CLUS_4                            1                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12P13.1) MUTATED        0     19      9
  DEL PEAK 28(12P13.1) WILD-TYPE     50     70     68
D52V2, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                            0                             50
  CLUS_2                           19                             70
  CLUS_3                            9                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12P13.1) MUTATED        6     62     21      3
  DEL PEAK 28(12P13.1) WILD-TYPE    209    185    111     19
D52V3, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                            6                            209
  CLUS_2                           62                            185
  CLUS_3                           21                            111
  CLUS_4                            3                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12P13.1) MUTATED       14     30     22
  DEL PEAK 28(12P13.1) WILD-TYPE    103     99    122
D52V4, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           14                            103
  CLUS_2                           30                             99
  CLUS_3                           22                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12P13.1) MUTATED       17     29     26
  DEL PEAK 28(12P13.1) WILD-TYPE     91    168    151
D52V5, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           17                             91
  CLUS_2                           29                            168
  CLUS_3                           26                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12P13.1) MUTATED       37     23     12
  DEL PEAK 28(12P13.1) WILD-TYPE    191    145     74
D52V6, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           37                            191
  CLUS_2                           23                            145
  CLUS_3                           12                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12P13.1) MUTATED       34     13     18     27
  DEL PEAK 28(12P13.1) WILD-TYPE    122    115    113    171
D52V7, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           34                            122
  CLUS_2                           13                            115
  CLUS_3                           18                            113
  CLUS_4                           27                            171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12P13.1) MUTATED       18     12      1     12     16     25
  DEL PEAK 28(12P13.1) WILD-TYPE     62     74     63     45     74    113
                                vv
clus                             CLUS_7
  DEL PEAK 28(12P13.1) MUTATED        8
  DEL PEAK 28(12P13.1) WILD-TYPE     90
D52V8, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           18                             62
  CLUS_2                           12                             74
  CLUS_3                            1                             63
  CLUS_4                           12                             45
  CLUS_5                           16                             74
  CLUS_6                           25                            113
  CLUS_7                            8                             90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12P13.1) MUTATED       18     21     18     25
  DEL PEAK 28(12P13.1) WILD-TYPE    135     74     68    180
D52V9, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           18                            135
  CLUS_2                           21                             74
  CLUS_3                           18                             68
  CLUS_4                           25                            180
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12P13.1) MUTATED        7      9      4     15      4      9
  DEL PEAK 28(12P13.1) WILD-TYPE     42     65     25     71     73     45
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 28(12P13.1) MUTATED       13      6     15
  DEL PEAK 28(12P13.1) WILD-TYPE     44     26     66
D52V10, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                            7                             42
  CLUS_2                            9                             65
  CLUS_3                            4                             25
  CLUS_4                           15                             71
  CLUS_5                            4                             73
  CLUS_6                            9                             45
  CLUS_7                           13                             44
  CLUS_8                            6                             26
  CLUS_9                           15                             66
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12P13.1) MUTATED        7      7      7      2
  DEL PEAK 28(12P13.1) WILD-TYPE     28     33     31     20
D52V11, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                            7                             28
  CLUS_2                            7                             33
  CLUS_3                            7                             31
  CLUS_4                            2                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12P13.1) MUTATED        8      5      3      7
  DEL PEAK 28(12P13.1) WILD-TYPE     55     11     31     15
D52V12, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                            8                             55
  CLUS_2                            5                             11
  CLUS_3                            3                             31
  CLUS_4                            7                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 29(12Q21.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12Q21.33) MUTATED        4     15     12      2
  DEL PEAK 29(12Q21.33) WILD-TYPE     41     48     53     41
D53V1, multiclass
        clus
vv       DEL PEAK 29(12Q21.33) MUTATED DEL PEAK 29(12Q21.33) WILD-TYPE
  CLUS_1                             4                              41
  CLUS_2                            15                              48
  CLUS_3                            12                              53
  CLUS_4                             2                              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12Q21.33) MUTATED        3     21      9
  DEL PEAK 29(12Q21.33) WILD-TYPE     47     68     68
D53V2, multiclass
        clus
vv       DEL PEAK 29(12Q21.33) MUTATED DEL PEAK 29(12Q21.33) WILD-TYPE
  CLUS_1                             3                              47
  CLUS_2                            21                              68
  CLUS_3                             9                              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12Q21.33) MUTATED        6     61     18      5
  DEL PEAK 29(12Q21.33) WILD-TYPE    209    186    114     17
D53V3, multiclass
        clus
vv       DEL PEAK 29(12Q21.33) MUTATED DEL PEAK 29(12Q21.33) WILD-TYPE
  CLUS_1                             6                             209
  CLUS_2                            61                             186
  CLUS_3                            18                             114
  CLUS_4                             5                              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12Q21.33) MUTATED       16     25     17
  DEL PEAK 29(12Q21.33) WILD-TYPE    101    104    127
D53V4, multiclass
        clus
vv       DEL PEAK 29(12Q21.33) MUTATED DEL PEAK 29(12Q21.33) WILD-TYPE
  CLUS_1                            16                             101
  CLUS_2                            25                             104
  CLUS_3                            17                             127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12Q21.33) MUTATED       20     22     23
  DEL PEAK 29(12Q21.33) WILD-TYPE     88    175    154
D53V5, multiclass
        clus
vv       DEL PEAK 29(12Q21.33) MUTATED DEL PEAK 29(12Q21.33) WILD-TYPE
  CLUS_1                            20                              88
  CLUS_2                            22                             175
  CLUS_3                            23                             154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12Q21.33) MUTATED       37     15     13
  DEL PEAK 29(12Q21.33) WILD-TYPE    191    153     73
D53V6, multiclass
        clus
vv       DEL PEAK 29(12Q21.33) MUTATED DEL PEAK 29(12Q21.33) WILD-TYPE
  CLUS_1                            37                             191
  CLUS_2                            15                             153
  CLUS_3                            13                              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12Q21.33) MUTATED       32     12     17     29
  DEL PEAK 29(12Q21.33) WILD-TYPE    124    116    114    169
D53V7, multiclass
        clus
vv       DEL PEAK 29(12Q21.33) MUTATED DEL PEAK 29(12Q21.33) WILD-TYPE
  CLUS_1                            32                             124
  CLUS_2                            12                             116
  CLUS_3                            17                             114
  CLUS_4                            29                             169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(12Q21.33) MUTATED       16      4      3     10     21     26
  DEL PEAK 29(12Q21.33) WILD-TYPE     64     82     61     47     69    112
                                 vv
clus                              CLUS_7
  DEL PEAK 29(12Q21.33) MUTATED       10
  DEL PEAK 29(12Q21.33) WILD-TYPE     88
D53V8, multiclass
        clus
vv       DEL PEAK 29(12Q21.33) MUTATED DEL PEAK 29(12Q21.33) WILD-TYPE
  CLUS_1                            16                              64
  CLUS_2                             4                              82
  CLUS_3                             3                              61
  CLUS_4                            10                              47
  CLUS_5                            21                              69
  CLUS_6                            26                             112
  CLUS_7                            10                              88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12Q21.33) MUTATED       18     19     13     26
  DEL PEAK 29(12Q21.33) WILD-TYPE    135     76     73    179
D53V9, multiclass
        clus
vv       DEL PEAK 29(12Q21.33) MUTATED DEL PEAK 29(12Q21.33) WILD-TYPE
  CLUS_1                            18                             135
  CLUS_2                            19                              76
  CLUS_3                            13                              73
  CLUS_4                            26                             179
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(12Q21.33) MUTATED        9      8      3     13      6      9
  DEL PEAK 29(12Q21.33) WILD-TYPE     40     66     26     73     71     45
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 29(12Q21.33) MUTATED        9      5     14
  DEL PEAK 29(12Q21.33) WILD-TYPE     48     27     67
D53V10, multiclass
        clus
vv       DEL PEAK 29(12Q21.33) MUTATED DEL PEAK 29(12Q21.33) WILD-TYPE
  CLUS_1                             9                              40
  CLUS_2                             8                              66
  CLUS_3                             3                              26
  CLUS_4                            13                              73
  CLUS_5                             6                              71
  CLUS_6                             9                              45
  CLUS_7                             9                              48
  CLUS_8                             5                              27
  CLUS_9                            14                              67
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12Q21.33) MUTATED        5      8      4      4
  DEL PEAK 29(12Q21.33) WILD-TYPE     30     32     34     18
D53V11, multiclass
        clus
vv       DEL PEAK 29(12Q21.33) MUTATED DEL PEAK 29(12Q21.33) WILD-TYPE
  CLUS_1                             5                              30
  CLUS_2                             8                              32
  CLUS_3                             4                              34
  CLUS_4                             4                              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12Q21.33) MUTATED       10      5      3      3
  DEL PEAK 29(12Q21.33) WILD-TYPE     53     11     31     19
D53V12, multiclass
        clus
vv       DEL PEAK 29(12Q21.33) MUTATED DEL PEAK 29(12Q21.33) WILD-TYPE
  CLUS_1                            10                              53
  CLUS_2                             5                              11
  CLUS_3                             3                              31
  CLUS_4                             3                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 30(14Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(14Q11.2) MUTATED        8     32     32      7
  DEL PEAK 30(14Q11.2) WILD-TYPE     37     31     33     36
D54V1, multiclass
        clus
vv       DEL PEAK 30(14Q11.2) MUTATED DEL PEAK 30(14Q11.2) WILD-TYPE
  CLUS_1                            8                             37
  CLUS_2                           32                             31
  CLUS_3                           32                             33
  CLUS_4                            7                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q11.2) MUTATED        5     47     27
  DEL PEAK 30(14Q11.2) WILD-TYPE     45     42     50
D54V2, multiclass
        clus
vv       DEL PEAK 30(14Q11.2) MUTATED DEL PEAK 30(14Q11.2) WILD-TYPE
  CLUS_1                            5                             45
  CLUS_2                           47                             42
  CLUS_3                           27                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(14Q11.2) MUTATED       21    158     25      8
  DEL PEAK 30(14Q11.2) WILD-TYPE    194     89    107     14
D54V3, multiclass
        clus
vv       DEL PEAK 30(14Q11.2) MUTATED DEL PEAK 30(14Q11.2) WILD-TYPE
  CLUS_1                           21                            194
  CLUS_2                          158                             89
  CLUS_3                           25                            107
  CLUS_4                            8                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q11.2) MUTATED       35     65     32
  DEL PEAK 30(14Q11.2) WILD-TYPE     82     64    112
D54V4, multiclass
        clus
vv       DEL PEAK 30(14Q11.2) MUTATED DEL PEAK 30(14Q11.2) WILD-TYPE
  CLUS_1                           35                             82
  CLUS_2                           65                             64
  CLUS_3                           32                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q11.2) MUTATED       41     77     50
  DEL PEAK 30(14Q11.2) WILD-TYPE     67    120    127
D54V5, multiclass
        clus
vv       DEL PEAK 30(14Q11.2) MUTATED DEL PEAK 30(14Q11.2) WILD-TYPE
  CLUS_1                           41                             67
  CLUS_2                           77                            120
  CLUS_3                           50                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q11.2) MUTATED       72     54     42
  DEL PEAK 30(14Q11.2) WILD-TYPE    156    114     44
D54V6, multiclass
        clus
vv       DEL PEAK 30(14Q11.2) MUTATED DEL PEAK 30(14Q11.2) WILD-TYPE
  CLUS_1                           72                            156
  CLUS_2                           54                            114
  CLUS_3                           42                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(14Q11.2) MUTATED       83     25     30     73
  DEL PEAK 30(14Q11.2) WILD-TYPE     73    103    101    125
D54V7, multiclass
        clus
vv       DEL PEAK 30(14Q11.2) MUTATED DEL PEAK 30(14Q11.2) WILD-TYPE
  CLUS_1                           83                             73
  CLUS_2                           25                            103
  CLUS_3                           30                            101
  CLUS_4                           73                            125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q11.2) MUTATED       37     25      3     23     38     67
  DEL PEAK 30(14Q11.2) WILD-TYPE     43     61     61     34     52     71
                                vv
clus                             CLUS_7
  DEL PEAK 30(14Q11.2) MUTATED       18
  DEL PEAK 30(14Q11.2) WILD-TYPE     80
D54V8, multiclass
        clus
vv       DEL PEAK 30(14Q11.2) MUTATED DEL PEAK 30(14Q11.2) WILD-TYPE
  CLUS_1                           37                             43
  CLUS_2                           25                             61
  CLUS_3                            3                             61
  CLUS_4                           23                             34
  CLUS_5                           38                             52
  CLUS_6                           67                             71
  CLUS_7                           18                             80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(14Q11.2) MUTATED       43     34     46     59
  DEL PEAK 30(14Q11.2) WILD-TYPE    110     61     40    146
D54V9, multiclass
        clus
vv       DEL PEAK 30(14Q11.2) MUTATED DEL PEAK 30(14Q11.2) WILD-TYPE
  CLUS_1                           43                            110
  CLUS_2                           34                             61
  CLUS_3                           46                             40
  CLUS_4                           59                            146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q11.2) MUTATED       14     20      9     28      9     29
  DEL PEAK 30(14Q11.2) WILD-TYPE     35     54     20     58     68     25
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 30(14Q11.2) MUTATED       29     10     34
  DEL PEAK 30(14Q11.2) WILD-TYPE     28     22     47
D54V10, multiclass
        clus
vv       DEL PEAK 30(14Q11.2) MUTATED DEL PEAK 30(14Q11.2) WILD-TYPE
  CLUS_1                           14                             35
  CLUS_2                           20                             54
  CLUS_3                            9                             20
  CLUS_4                           28                             58
  CLUS_5                            9                             68
  CLUS_6                           29                             25
  CLUS_7                           29                             28
  CLUS_8                           10                             22
  CLUS_9                           34                             47
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(14Q11.2) MUTATED       15     14     23      5
  DEL PEAK 30(14Q11.2) WILD-TYPE     20     26     15     17
D54V11, multiclass
        clus
vv       DEL PEAK 30(14Q11.2) MUTATED DEL PEAK 30(14Q11.2) WILD-TYPE
  CLUS_1                           15                             20
  CLUS_2                           14                             26
  CLUS_3                           23                             15
  CLUS_4                            5                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(14Q11.2) MUTATED       20      6     17     14
  DEL PEAK 30(14Q11.2) WILD-TYPE     43     10     17      8
D54V12, multiclass
        clus
vv       DEL PEAK 30(14Q11.2) MUTATED DEL PEAK 30(14Q11.2) WILD-TYPE
  CLUS_1                           20                             43
  CLUS_2                            6                             10
  CLUS_3                           17                             17
  CLUS_4                           14                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 31(14Q31.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(14Q31.1) MUTATED       11     32     32      8
  DEL PEAK 31(14Q31.1) WILD-TYPE     34     31     33     35
D55V1, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                           11                             34
  CLUS_2                           32                             31
  CLUS_3                           32                             33
  CLUS_4                            8                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q31.1) MUTATED        8     48     27
  DEL PEAK 31(14Q31.1) WILD-TYPE     42     41     50
D55V2, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                            8                             42
  CLUS_2                           48                             41
  CLUS_3                           27                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(14Q31.1) MUTATED       22    159     29     10
  DEL PEAK 31(14Q31.1) WILD-TYPE    193     88    103     12
D55V3, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                           22                            193
  CLUS_2                          159                             88
  CLUS_3                           29                            103
  CLUS_4                           10                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q31.1) MUTATED       34     67     35
  DEL PEAK 31(14Q31.1) WILD-TYPE     83     62    109
D55V4, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                           34                             83
  CLUS_2                           67                             62
  CLUS_3                           35                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q31.1) MUTATED       43     80     51
  DEL PEAK 31(14Q31.1) WILD-TYPE     65    117    126
D55V5, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                           43                             65
  CLUS_2                           80                            117
  CLUS_3                           51                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q31.1) MUTATED       73     60     41
  DEL PEAK 31(14Q31.1) WILD-TYPE    155    108     45
D55V6, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                           73                            155
  CLUS_2                           60                            108
  CLUS_3                           41                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(14Q31.1) MUTATED       83     27     32     77
  DEL PEAK 31(14Q31.1) WILD-TYPE     73    101     99    121
D55V7, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                           83                             73
  CLUS_2                           27                            101
  CLUS_3                           32                             99
  CLUS_4                           77                            121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(14Q31.1) MUTATED       35     27      6     25     36     69
  DEL PEAK 31(14Q31.1) WILD-TYPE     45     59     58     32     54     69
                                vv
clus                             CLUS_7
  DEL PEAK 31(14Q31.1) MUTATED       21
  DEL PEAK 31(14Q31.1) WILD-TYPE     77
D55V8, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                           35                             45
  CLUS_2                           27                             59
  CLUS_3                            6                             58
  CLUS_4                           25                             32
  CLUS_5                           36                             54
  CLUS_6                           69                             69
  CLUS_7                           21                             77
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(14Q31.1) MUTATED       47     36     42     66
  DEL PEAK 31(14Q31.1) WILD-TYPE    106     59     44    139
D55V9, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                           47                            106
  CLUS_2                           36                             59
  CLUS_3                           42                             44
  CLUS_4                           66                            139
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(14Q31.1) MUTATED       15     21      9     31      9     29
  DEL PEAK 31(14Q31.1) WILD-TYPE     34     53     20     55     68     25
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 31(14Q31.1) MUTATED       27     12     38
  DEL PEAK 31(14Q31.1) WILD-TYPE     30     20     43
D55V10, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                           15                             34
  CLUS_2                           21                             53
  CLUS_3                            9                             20
  CLUS_4                           31                             55
  CLUS_5                            9                             68
  CLUS_6                           29                             25
  CLUS_7                           27                             30
  CLUS_8                           12                             20
  CLUS_9                           38                             43
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(14Q31.1) MUTATED       15     15     22      8
  DEL PEAK 31(14Q31.1) WILD-TYPE     20     25     16     14
D55V11, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                           15                             20
  CLUS_2                           15                             25
  CLUS_3                           22                             16
  CLUS_4                            8                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(14Q31.1) MUTATED       21      6     18     15
  DEL PEAK 31(14Q31.1) WILD-TYPE     42     10     16      7
D55V12, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                           21                             42
  CLUS_2                            6                             10
  CLUS_3                           18                             16
  CLUS_4                           15                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 32(15Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q11.2) MUTATED       12     33     36     10
  DEL PEAK 32(15Q11.2) WILD-TYPE     33     30     29     33
D56V1, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           12                             33
  CLUS_2                           33                             30
  CLUS_3                           36                             29
  CLUS_4                           10                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q11.2) MUTATED       12     52     27
  DEL PEAK 32(15Q11.2) WILD-TYPE     38     37     50
D56V2, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           12                             38
  CLUS_2                           52                             37
  CLUS_3                           27                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q11.2) MUTATED       23    150     61     15
  DEL PEAK 32(15Q11.2) WILD-TYPE    192     97     71      7
D56V3, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           23                            192
  CLUS_2                          150                             97
  CLUS_3                           61                             71
  CLUS_4                           15                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q11.2) MUTATED       39     71     47
  DEL PEAK 32(15Q11.2) WILD-TYPE     78     58     97
D56V4, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           39                             78
  CLUS_2                           71                             58
  CLUS_3                           47                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q11.2) MUTATED       46     82     59
  DEL PEAK 32(15Q11.2) WILD-TYPE     62    115    118
D56V5, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           46                             62
  CLUS_2                           82                            115
  CLUS_3                           59                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q11.2) MUTATED       90     63     34
  DEL PEAK 32(15Q11.2) WILD-TYPE    138    105     52
D56V6, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           90                            138
  CLUS_2                           63                            105
  CLUS_3                           34                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q11.2) MUTATED       82     33     52     81
  DEL PEAK 32(15Q11.2) WILD-TYPE     74     95     79    117
D56V7, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           82                             74
  CLUS_2                           33                             95
  CLUS_3                           52                             79
  CLUS_4                           81                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q11.2) MUTATED       38     32      3     23     52     65
  DEL PEAK 32(15Q11.2) WILD-TYPE     42     54     61     34     38     73
                                vv
clus                             CLUS_7
  DEL PEAK 32(15Q11.2) MUTATED       35
  DEL PEAK 32(15Q11.2) WILD-TYPE     63
D56V8, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           38                             42
  CLUS_2                           32                             54
  CLUS_3                            3                             61
  CLUS_4                           23                             34
  CLUS_5                           52                             38
  CLUS_6                           65                             73
  CLUS_7                           35                             63
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q11.2) MUTATED       52     46     47     71
  DEL PEAK 32(15Q11.2) WILD-TYPE    101     49     39    134
D56V9, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           52                            101
  CLUS_2                           46                             49
  CLUS_3                           47                             39
  CLUS_4                           71                            134
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q11.2) MUTATED       16     34      8     44     16     18
  DEL PEAK 32(15Q11.2) WILD-TYPE     33     40     21     42     61     36
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 32(15Q11.2) MUTATED       29     13     38
  DEL PEAK 32(15Q11.2) WILD-TYPE     28     19     43
D56V10, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           16                             33
  CLUS_2                           34                             40
  CLUS_3                            8                             21
  CLUS_4                           44                             42
  CLUS_5                           16                             61
  CLUS_6                           18                             36
  CLUS_7                           29                             28
  CLUS_8                           13                             19
  CLUS_9                           38                             43
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q11.2) MUTATED       20     20     22      6
  DEL PEAK 32(15Q11.2) WILD-TYPE     15     20     16     16
D56V11, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           20                             15
  CLUS_2                           20                             20
  CLUS_3                           22                             16
  CLUS_4                            6                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q11.2) MUTATED       27     12     16     13
  DEL PEAK 32(15Q11.2) WILD-TYPE     36      4     18      9
D56V12, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           27                             36
  CLUS_2                           12                              4
  CLUS_3                           16                             18
  CLUS_4                           13                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 33(15Q15.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q15.2) MUTATED       11     34     38      9
  DEL PEAK 33(15Q15.2) WILD-TYPE     34     29     27     34
D57V1, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           11                             34
  CLUS_2                           34                             29
  CLUS_3                           38                             27
  CLUS_4                            9                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q15.2) MUTATED       11     53     28
  DEL PEAK 33(15Q15.2) WILD-TYPE     39     36     49
D57V2, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           11                             39
  CLUS_2                           53                             36
  CLUS_3                           28                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q15.2) MUTATED       25    146     64     16
  DEL PEAK 33(15Q15.2) WILD-TYPE    190    101     68      6
D57V3, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           25                            190
  CLUS_2                          146                            101
  CLUS_3                           64                             68
  CLUS_4                           16                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q15.2) MUTATED       42     71     45
  DEL PEAK 33(15Q15.2) WILD-TYPE     75     58     99
D57V4, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           42                             75
  CLUS_2                           71                             58
  CLUS_3                           45                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q15.2) MUTATED       49     80     57
  DEL PEAK 33(15Q15.2) WILD-TYPE     59    117    120
D57V5, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           49                             59
  CLUS_2                           80                            117
  CLUS_3                           57                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q15.2) MUTATED       90     60     36
  DEL PEAK 33(15Q15.2) WILD-TYPE    138    108     50
D57V6, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           90                            138
  CLUS_2                           60                            108
  CLUS_3                           36                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q15.2) MUTATED       84     36     49     81
  DEL PEAK 33(15Q15.2) WILD-TYPE     72     92     82    117
D57V7, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           84                             72
  CLUS_2                           36                             92
  CLUS_3                           49                             82
  CLUS_4                           81                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(15Q15.2) MUTATED       41     32      5     23     47     66
  DEL PEAK 33(15Q15.2) WILD-TYPE     39     54     59     34     43     72
                                vv
clus                             CLUS_7
  DEL PEAK 33(15Q15.2) MUTATED       36
  DEL PEAK 33(15Q15.2) WILD-TYPE     62
D57V8, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           41                             39
  CLUS_2                           32                             54
  CLUS_3                            5                             59
  CLUS_4                           23                             34
  CLUS_5                           47                             43
  CLUS_6                           66                             72
  CLUS_7                           36                             62
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q15.2) MUTATED       51     44     47     73
  DEL PEAK 33(15Q15.2) WILD-TYPE    102     51     39    132
D57V9, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           51                            102
  CLUS_2                           44                             51
  CLUS_3                           47                             39
  CLUS_4                           73                            132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(15Q15.2) MUTATED       17     30      9     43     13     19
  DEL PEAK 33(15Q15.2) WILD-TYPE     32     44     20     43     64     35
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 33(15Q15.2) MUTATED       30     14     40
  DEL PEAK 33(15Q15.2) WILD-TYPE     27     18     41
D57V10, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           17                             32
  CLUS_2                           30                             44
  CLUS_3                            9                             20
  CLUS_4                           43                             43
  CLUS_5                           13                             64
  CLUS_6                           19                             35
  CLUS_7                           30                             27
  CLUS_8                           14                             18
  CLUS_9                           40                             41
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q15.2) MUTATED       21     17     24      7
  DEL PEAK 33(15Q15.2) WILD-TYPE     14     23     14     15
D57V11, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           21                             14
  CLUS_2                           17                             23
  CLUS_3                           24                             14
  CLUS_4                            7                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q15.2) MUTATED       28     10     18     13
  DEL PEAK 33(15Q15.2) WILD-TYPE     35      6     16      9
D57V12, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           28                             35
  CLUS_2                           10                              6
  CLUS_3                           18                             16
  CLUS_4                           13                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 34(15Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q21.1) MUTATED       14     33     37      9
  DEL PEAK 34(15Q21.1) WILD-TYPE     31     30     28     34
D58V1, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           14                             31
  CLUS_2                           33                             30
  CLUS_3                           37                             28
  CLUS_4                            9                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q21.1) MUTATED       14     52     27
  DEL PEAK 34(15Q21.1) WILD-TYPE     36     37     50
D58V2, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           14                             36
  CLUS_2                           52                             37
  CLUS_3                           27                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q21.1) MUTATED       26    142     64     16
  DEL PEAK 34(15Q21.1) WILD-TYPE    189    105     68      6
D58V3, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           26                            189
  CLUS_2                          142                            105
  CLUS_3                           64                             68
  CLUS_4                           16                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q21.1) MUTATED       41     69     44
  DEL PEAK 34(15Q21.1) WILD-TYPE     76     60    100
D58V4, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           41                             76
  CLUS_2                           69                             60
  CLUS_3                           44                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q21.1) MUTATED       47     81     58
  DEL PEAK 34(15Q21.1) WILD-TYPE     61    116    119
D58V5, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           47                             61
  CLUS_2                           81                            116
  CLUS_3                           58                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q21.1) MUTATED       90     61     35
  DEL PEAK 34(15Q21.1) WILD-TYPE    138    107     51
D58V6, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           90                            138
  CLUS_2                           61                            107
  CLUS_3                           35                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q21.1) MUTATED       82     35     48     82
  DEL PEAK 34(15Q21.1) WILD-TYPE     74     93     83    116
D58V7, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           82                             74
  CLUS_2                           35                             93
  CLUS_3                           48                             83
  CLUS_4                           82                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(15Q21.1) MUTATED       39     31      5     23     46     65
  DEL PEAK 34(15Q21.1) WILD-TYPE     41     55     59     34     44     73
                                vv
clus                             CLUS_7
  DEL PEAK 34(15Q21.1) MUTATED       38
  DEL PEAK 34(15Q21.1) WILD-TYPE     60
D58V8, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           39                             41
  CLUS_2                           31                             55
  CLUS_3                            5                             59
  CLUS_4                           23                             34
  CLUS_5                           46                             44
  CLUS_6                           65                             73
  CLUS_7                           38                             60
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q21.1) MUTATED       51     44     45     74
  DEL PEAK 34(15Q21.1) WILD-TYPE    102     51     41    131
D58V9, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           51                            102
  CLUS_2                           44                             51
  CLUS_3                           45                             41
  CLUS_4                           74                            131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(15Q21.1) MUTATED       17     30      9     42     15     19
  DEL PEAK 34(15Q21.1) WILD-TYPE     32     44     20     44     62     35
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 34(15Q21.1) MUTATED       29     14     39
  DEL PEAK 34(15Q21.1) WILD-TYPE     28     18     42
D58V10, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           17                             32
  CLUS_2                           30                             44
  CLUS_3                            9                             20
  CLUS_4                           42                             44
  CLUS_5                           15                             62
  CLUS_6                           19                             35
  CLUS_7                           29                             28
  CLUS_8                           14                             18
  CLUS_9                           39                             42
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q21.1) MUTATED       21     17     23      7
  DEL PEAK 34(15Q21.1) WILD-TYPE     14     23     15     15
D58V11, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           21                             14
  CLUS_2                           17                             23
  CLUS_3                           23                             15
  CLUS_4                            7                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q21.1) MUTATED       28     10     17     13
  DEL PEAK 34(15Q21.1) WILD-TYPE     35      6     17      9
D58V12, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           28                             35
  CLUS_2                           10                              6
  CLUS_3                           17                             17
  CLUS_4                           13                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 35(15Q22.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(15Q22.33) MUTATED       12     31     35      7
  DEL PEAK 35(15Q22.33) WILD-TYPE     33     32     30     36
D59V1, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            12                              33
  CLUS_2                            31                              32
  CLUS_3                            35                              30
  CLUS_4                             7                              36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(15Q22.33) MUTATED       11     52     22
  DEL PEAK 35(15Q22.33) WILD-TYPE     39     37     55
D59V2, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            11                              39
  CLUS_2                            52                              37
  CLUS_3                            22                              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(15Q22.33) MUTATED       18    140     63     17
  DEL PEAK 35(15Q22.33) WILD-TYPE    197    107     69      5
D59V3, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            18                             197
  CLUS_2                           140                             107
  CLUS_3                            63                              69
  CLUS_4                            17                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(15Q22.33) MUTATED       41     70     41
  DEL PEAK 35(15Q22.33) WILD-TYPE     76     59    103
D59V4, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            41                              76
  CLUS_2                            70                              59
  CLUS_3                            41                             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(15Q22.33) MUTATED       43     75     61
  DEL PEAK 35(15Q22.33) WILD-TYPE     65    122    116
D59V5, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            43                              65
  CLUS_2                            75                             122
  CLUS_3                            61                             116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(15Q22.33) MUTATED       91     57     31
  DEL PEAK 35(15Q22.33) WILD-TYPE    137    111     55
D59V6, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            91                             137
  CLUS_2                            57                             111
  CLUS_3                            31                              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(15Q22.33) MUTATED       80     29     50     78
  DEL PEAK 35(15Q22.33) WILD-TYPE     76     99     81    120
D59V7, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            80                              76
  CLUS_2                            29                              99
  CLUS_3                            50                              81
  CLUS_4                            78                             120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(15Q22.33) MUTATED       37     29      3     23     50     64
  DEL PEAK 35(15Q22.33) WILD-TYPE     43     57     61     34     40     74
                                 vv
clus                              CLUS_7
  DEL PEAK 35(15Q22.33) MUTATED       31
  DEL PEAK 35(15Q22.33) WILD-TYPE     67
D59V8, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            37                              43
  CLUS_2                            29                              57
  CLUS_3                             3                              61
  CLUS_4                            23                              34
  CLUS_5                            50                              40
  CLUS_6                            64                              74
  CLUS_7                            31                              67
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(15Q22.33) MUTATED       50     45     44     66
  DEL PEAK 35(15Q22.33) WILD-TYPE    103     50     42    139
D59V9, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            50                             103
  CLUS_2                            45                              50
  CLUS_3                            44                              42
  CLUS_4                            66                             139
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(15Q22.33) MUTATED       17     31      8     37     11     18
  DEL PEAK 35(15Q22.33) WILD-TYPE     32     43     21     49     66     36
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 35(15Q22.33) MUTATED       29     14     40
  DEL PEAK 35(15Q22.33) WILD-TYPE     28     18     41
D59V10, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            17                              32
  CLUS_2                            31                              43
  CLUS_3                             8                              21
  CLUS_4                            37                              49
  CLUS_5                            11                              66
  CLUS_6                            18                              36
  CLUS_7                            29                              28
  CLUS_8                            14                              18
  CLUS_9                            40                              41
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(15Q22.33) MUTATED       21     18     21      6
  DEL PEAK 35(15Q22.33) WILD-TYPE     14     22     17     16
D59V11, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            21                              14
  CLUS_2                            18                              22
  CLUS_3                            21                              17
  CLUS_4                             6                              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(15Q22.33) MUTATED       27     11     15     13
  DEL PEAK 35(15Q22.33) WILD-TYPE     36      5     19      9
D59V12, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            27                              36
  CLUS_2                            11                               5
  CLUS_3                            15                              19
  CLUS_4                            13                               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 36(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16P13.3) MUTATED        6     12      6      1
  DEL PEAK 36(16P13.3) WILD-TYPE     39     51     59     42
D60V1, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                            6                             39
  CLUS_2                           12                             51
  CLUS_3                            6                             59
  CLUS_4                            1                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16P13.3) MUTATED        5     16      4
  DEL PEAK 36(16P13.3) WILD-TYPE     45     73     73
D60V2, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                            5                             45
  CLUS_2                           16                             73
  CLUS_3                            4                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16P13.3) MUTATED       14     28     24      3
  DEL PEAK 36(16P13.3) WILD-TYPE    201    219    108     19
D60V3, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                           14                            201
  CLUS_2                           28                            219
  CLUS_3                           24                            108
  CLUS_4                            3                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16P13.3) MUTATED       15     15     14
  DEL PEAK 36(16P13.3) WILD-TYPE    102    114    130
D60V4, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                           15                            102
  CLUS_2                           15                            114
  CLUS_3                           14                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16P13.3) MUTATED       10     22     21
  DEL PEAK 36(16P13.3) WILD-TYPE     98    175    156
D60V5, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                           10                             98
  CLUS_2                           22                            175
  CLUS_3                           21                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16P13.3) MUTATED       25     17     11
  DEL PEAK 36(16P13.3) WILD-TYPE    203    151     75
D60V6, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                           25                            203
  CLUS_2                           17                            151
  CLUS_3                           11                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16P13.3) MUTATED       23     11     11     24
  DEL PEAK 36(16P13.3) WILD-TYPE    133    117    120    174
D60V7, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                           23                            133
  CLUS_2                           11                            117
  CLUS_3                           11                            120
  CLUS_4                           24                            174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(16P13.3) MUTATED       11     13      3      2     12     20
  DEL PEAK 36(16P13.3) WILD-TYPE     69     73     61     55     78    118
                                vv
clus                             CLUS_7
  DEL PEAK 36(16P13.3) MUTATED        8
  DEL PEAK 36(16P13.3) WILD-TYPE     90
D60V8, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                           11                             69
  CLUS_2                           13                             73
  CLUS_3                            3                             61
  CLUS_4                            2                             55
  CLUS_5                           12                             78
  CLUS_6                           20                            118
  CLUS_7                            8                             90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16P13.3) MUTATED       16      6     10     24
  DEL PEAK 36(16P13.3) WILD-TYPE    137     89     76    181
D60V9, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                           16                            137
  CLUS_2                            6                             89
  CLUS_3                           10                             76
  CLUS_4                           24                            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(16P13.3) MUTATED        8      4      4      8      7      1
  DEL PEAK 36(16P13.3) WILD-TYPE     41     70     25     78     70     53
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 36(16P13.3) MUTATED        8      5     11
  DEL PEAK 36(16P13.3) WILD-TYPE     49     27     70
D60V10, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                            8                             41
  CLUS_2                            4                             70
  CLUS_3                            4                             25
  CLUS_4                            8                             78
  CLUS_5                            7                             70
  CLUS_6                            1                             53
  CLUS_7                            8                             49
  CLUS_8                            5                             27
  CLUS_9                           11                             70
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16P13.3) MUTATED        3      4      3      0
  DEL PEAK 36(16P13.3) WILD-TYPE     32     36     35     22
D60V11, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                            3                             32
  CLUS_2                            4                             36
  CLUS_3                            3                             35
  CLUS_4                            0                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16P13.3) MUTATED        5      1      2      2
  DEL PEAK 36(16P13.3) WILD-TYPE     58     15     32     20
D60V12, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                            5                             58
  CLUS_2                            1                             15
  CLUS_3                            2                             32
  CLUS_4                            2                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 37(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q23.1) MUTATED       12      7      6      5
  DEL PEAK 37(16Q23.1) WILD-TYPE     33     56     59     38
D61V1, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           12                             33
  CLUS_2                            7                             56
  CLUS_3                            6                             59
  CLUS_4                            5                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       15     10      5
  DEL PEAK 37(16Q23.1) WILD-TYPE     35     79     72
D61V2, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           15                             35
  CLUS_2                           10                             79
  CLUS_3                            5                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q23.1) MUTATED       30     27     24      3
  DEL PEAK 37(16Q23.1) WILD-TYPE    185    220    108     19
D61V3, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           30                            185
  CLUS_2                           27                            220
  CLUS_3                           24                            108
  CLUS_4                            3                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       16     14     23
  DEL PEAK 37(16Q23.1) WILD-TYPE    101    115    121
D61V4, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           16                            101
  CLUS_2                           14                            115
  CLUS_3                           23                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       16     21     26
  DEL PEAK 37(16Q23.1) WILD-TYPE     92    176    151
D61V5, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           16                             92
  CLUS_2                           21                            176
  CLUS_3                           26                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       30     23     10
  DEL PEAK 37(16Q23.1) WILD-TYPE    198    145     76
D61V6, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           30                            198
  CLUS_2                           23                            145
  CLUS_3                           10                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q23.1) MUTATED       19     21     15     29
  DEL PEAK 37(16Q23.1) WILD-TYPE    137    107    116    169
D61V7, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           19                            137
  CLUS_2                           21                            107
  CLUS_3                           15                            116
  CLUS_4                           29                            169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(16Q23.1) MUTATED        8     12     10      8     14     14
  DEL PEAK 37(16Q23.1) WILD-TYPE     72     74     54     49     76    124
                                vv
clus                             CLUS_7
  DEL PEAK 37(16Q23.1) MUTATED       18
  DEL PEAK 37(16Q23.1) WILD-TYPE     80
D61V8, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                            8                             72
  CLUS_2                           12                             74
  CLUS_3                           10                             54
  CLUS_4                            8                             49
  CLUS_5                           14                             76
  CLUS_6                           14                            124
  CLUS_7                           18                             80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q23.1) MUTATED       21      9      8     29
  DEL PEAK 37(16Q23.1) WILD-TYPE    132     86     78    176
D61V9, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           21                            132
  CLUS_2                            9                             86
  CLUS_3                            8                             78
  CLUS_4                           29                            176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(16Q23.1) MUTATED        7      6      4      9     15      3
  DEL PEAK 37(16Q23.1) WILD-TYPE     42     68     25     77     62     51
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 37(16Q23.1) MUTATED       11      6      6
  DEL PEAK 37(16Q23.1) WILD-TYPE     46     26     75
D61V10, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                            7                             42
  CLUS_2                            6                             68
  CLUS_3                            4                             25
  CLUS_4                            9                             77
  CLUS_5                           15                             62
  CLUS_6                            3                             51
  CLUS_7                           11                             46
  CLUS_8                            6                             26
  CLUS_9                            6                             75
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q23.1) MUTATED        4      6      5      5
  DEL PEAK 37(16Q23.1) WILD-TYPE     31     34     33     17
D61V11, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                            4                             31
  CLUS_2                            6                             34
  CLUS_3                            5                             33
  CLUS_4                            5                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q23.1) MUTATED        9      1      8      2
  DEL PEAK 37(16Q23.1) WILD-TYPE     54     15     26     20
D61V12, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                            9                             54
  CLUS_2                            1                             15
  CLUS_3                            8                             26
  CLUS_4                            2                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 38(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P12) MUTATED       17     51     50     15
  DEL PEAK 38(17P12) WILD-TYPE     28     12     15     28
D62V1, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         17                           28
  CLUS_2                         51                           12
  CLUS_3                         50                           15
  CLUS_4                         15                           28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P12) MUTATED       14     70     49
  DEL PEAK 38(17P12) WILD-TYPE     36     19     28
D62V2, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         14                           36
  CLUS_2                         70                           19
  CLUS_3                         49                           28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P12) MUTATED       46    204    105     15
  DEL PEAK 38(17P12) WILD-TYPE    169     43     27      7
D62V3, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         46                          169
  CLUS_2                        204                           43
  CLUS_3                        105                           27
  CLUS_4                         15                            7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P12) MUTATED       57    106     71
  DEL PEAK 38(17P12) WILD-TYPE     60     23     73
D62V4, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         57                           60
  CLUS_2                        106                           23
  CLUS_3                         71                           73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P12) MUTATED       71    120     96
  DEL PEAK 38(17P12) WILD-TYPE     37     77     81
D62V5, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         71                           37
  CLUS_2                        120                           77
  CLUS_3                         96                           81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P12) MUTATED      134     99     54
  DEL PEAK 38(17P12) WILD-TYPE     94     69     32
D62V6, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                        134                           94
  CLUS_2                         99                           69
  CLUS_3                         54                           32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P12) MUTATED      122     53     72    121
  DEL PEAK 38(17P12) WILD-TYPE     34     75     59     77
D62V7, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                        122                           34
  CLUS_2                         53                           75
  CLUS_3                         72                           59
  CLUS_4                        121                           77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 38(17P12) MUTATED       58     49      8     39     68    106     40
  DEL PEAK 38(17P12) WILD-TYPE     22     37     56     18     22     32     58
D62V8, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         58                           22
  CLUS_2                         49                           37
  CLUS_3                          8                           56
  CLUS_4                         39                           18
  CLUS_5                         68                           22
  CLUS_6                        106                           32
  CLUS_7                         40                           58
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P12) MUTATED       86     57     69    111
  DEL PEAK 38(17P12) WILD-TYPE     67     38     17     94
D62V9, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         86                           67
  CLUS_2                         57                           38
  CLUS_3                         69                           17
  CLUS_4                        111                           94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 38(17P12) MUTATED       26     43     18     60     20     38     41
  DEL PEAK 38(17P12) WILD-TYPE     23     31     11     26     57     16     16
                              vv
clus                           CLUS_8 CLUS_9
  DEL PEAK 38(17P12) MUTATED       17     60
  DEL PEAK 38(17P12) WILD-TYPE     15     21
D62V10, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         26                           23
  CLUS_2                         43                           31
  CLUS_3                         18                           11
  CLUS_4                         60                           26
  CLUS_5                         20                           57
  CLUS_6                         38                           16
  CLUS_7                         41                           16
  CLUS_8                         17                           15
  CLUS_9                         60                           21
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P12) MUTATED       20     28     29      9
  DEL PEAK 38(17P12) WILD-TYPE     15     12      9     13
D62V11, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         20                           15
  CLUS_2                         28                           12
  CLUS_3                         29                            9
  CLUS_4                          9                           13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P12) MUTATED       35     12     20     19
  DEL PEAK 38(17P12) WILD-TYPE     28      4     14      3
D62V12, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         35                           28
  CLUS_2                         12                            4
  CLUS_3                         20                           14
  CLUS_4                         19                            3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 39(17Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17Q24.3) MUTATED        6     10     12      6
  DEL PEAK 39(17Q24.3) WILD-TYPE     39     53     53     37
D63V1, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                            6                             39
  CLUS_2                           10                             53
  CLUS_3                           12                             53
  CLUS_4                            6                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17Q24.3) MUTATED        6     14     14
  DEL PEAK 39(17Q24.3) WILD-TYPE     44     75     63
D63V2, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                            6                             44
  CLUS_2                           14                             75
  CLUS_3                           14                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17Q24.3) MUTATED       15     43     27     10
  DEL PEAK 39(17Q24.3) WILD-TYPE    200    204    105     12
D63V3, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                           15                            200
  CLUS_2                           43                            204
  CLUS_3                           27                            105
  CLUS_4                           10                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17Q24.3) MUTATED       17     17     26
  DEL PEAK 39(17Q24.3) WILD-TYPE    100    112    118
D63V4, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                           17                            100
  CLUS_2                           17                            112
  CLUS_3                           26                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17Q24.3) MUTATED       18     30     21
  DEL PEAK 39(17Q24.3) WILD-TYPE     90    167    156
D63V5, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                           18                             90
  CLUS_2                           30                            167
  CLUS_3                           21                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17Q24.3) MUTATED       37     23      9
  DEL PEAK 39(17Q24.3) WILD-TYPE    191    145     77
D63V6, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                           37                            191
  CLUS_2                           23                            145
  CLUS_3                            9                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17Q24.3) MUTATED       26     16     22     31
  DEL PEAK 39(17Q24.3) WILD-TYPE    130    112    109    167
D63V7, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                           26                            130
  CLUS_2                           16                            112
  CLUS_3                           22                            109
  CLUS_4                           31                            167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(17Q24.3) MUTATED       16     10      4     13     17     20
  DEL PEAK 39(17Q24.3) WILD-TYPE     64     76     60     44     73    118
                                vv
clus                             CLUS_7
  DEL PEAK 39(17Q24.3) MUTATED       15
  DEL PEAK 39(17Q24.3) WILD-TYPE     83
D63V8, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                           16                             64
  CLUS_2                           10                             76
  CLUS_3                            4                             60
  CLUS_4                           13                             44
  CLUS_5                           17                             73
  CLUS_6                           20                            118
  CLUS_7                           15                             83
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17Q24.3) MUTATED       23     18     18     24
  DEL PEAK 39(17Q24.3) WILD-TYPE    130     77     68    181
D63V9, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                           23                            130
  CLUS_2                           18                             77
  CLUS_3                           18                             68
  CLUS_4                           24                            181
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(17Q24.3) MUTATED        6     11      4     12      9      9
  DEL PEAK 39(17Q24.3) WILD-TYPE     43     63     25     74     68     45
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 39(17Q24.3) MUTATED        9      5     18
  DEL PEAK 39(17Q24.3) WILD-TYPE     48     27     63
D63V10, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                            6                             43
  CLUS_2                           11                             63
  CLUS_3                            4                             25
  CLUS_4                           12                             74
  CLUS_5                            9                             68
  CLUS_6                            9                             45
  CLUS_7                            9                             48
  CLUS_8                            5                             27
  CLUS_9                           18                             63
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17Q24.3) MUTATED        6      8      6      5
  DEL PEAK 39(17Q24.3) WILD-TYPE     29     32     32     17
D63V11, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                            6                             29
  CLUS_2                            8                             32
  CLUS_3                            6                             32
  CLUS_4                            5                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17Q24.3) MUTATED       14      1      5      5
  DEL PEAK 39(17Q24.3) WILD-TYPE     49     15     29     17
D63V12, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                           14                             49
  CLUS_2                            1                             15
  CLUS_3                            5                             29
  CLUS_4                            5                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 40(18P11.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18P11.31) MUTATED       11     52     50     14
  DEL PEAK 40(18P11.31) WILD-TYPE     34     11     15     29
D64V1, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                            11                              34
  CLUS_2                            52                              11
  CLUS_3                            50                              15
  CLUS_4                            14                              29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18P11.31) MUTATED        9     75     43
  DEL PEAK 40(18P11.31) WILD-TYPE     41     14     34
D64V2, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                             9                              41
  CLUS_2                            75                              14
  CLUS_3                            43                              34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18P11.31) MUTATED       45    221     87     17
  DEL PEAK 40(18P11.31) WILD-TYPE    170     26     45      5
D64V3, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                            45                             170
  CLUS_2                           221                              26
  CLUS_3                            87                              45
  CLUS_4                            17                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18P11.31) MUTATED       62    120     59
  DEL PEAK 40(18P11.31) WILD-TYPE     55      9     85
D64V4, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                            62                              55
  CLUS_2                           120                               9
  CLUS_3                            59                              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18P11.31) MUTATED       65    121     97
  DEL PEAK 40(18P11.31) WILD-TYPE     43     76     80
D64V5, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                            65                              43
  CLUS_2                           121                              76
  CLUS_3                            97                              80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18P11.31) MUTATED      130    102     51
  DEL PEAK 40(18P11.31) WILD-TYPE     98     66     35
D64V6, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                           130                              98
  CLUS_2                           102                              66
  CLUS_3                            51                              35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18P11.31) MUTATED      141     41     72    114
  DEL PEAK 40(18P11.31) WILD-TYPE     15     87     59     84
D64V7, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                           141                              15
  CLUS_2                            41                              87
  CLUS_3                            72                              59
  CLUS_4                           114                              84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(18P11.31) MUTATED       66     46      6     40     70    106
  DEL PEAK 40(18P11.31) WILD-TYPE     14     40     58     17     20     32
                                 vv
clus                              CLUS_7
  DEL PEAK 40(18P11.31) MUTATED       34
  DEL PEAK 40(18P11.31) WILD-TYPE     64
D64V8, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                            66                              14
  CLUS_2                            46                              40
  CLUS_3                             6                              58
  CLUS_4                            40                              17
  CLUS_5                            70                              20
  CLUS_6                           106                              32
  CLUS_7                            34                              64
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18P11.31) MUTATED       84     60     74    101
  DEL PEAK 40(18P11.31) WILD-TYPE     69     35     12    104
D64V9, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                            84                              69
  CLUS_2                            60                              35
  CLUS_3                            74                              12
  CLUS_4                           101                             104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(18P11.31) MUTATED       26     41     17     57     15     41
  DEL PEAK 40(18P11.31) WILD-TYPE     23     33     12     29     62     13
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 40(18P11.31) MUTATED       42     16     64
  DEL PEAK 40(18P11.31) WILD-TYPE     15     16     17
D64V10, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                            26                              23
  CLUS_2                            41                              33
  CLUS_3                            17                              12
  CLUS_4                            57                              29
  CLUS_5                            15                              62
  CLUS_6                            41                              13
  CLUS_7                            42                              15
  CLUS_8                            16                              16
  CLUS_9                            64                              17
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18P11.31) MUTATED       24     28     34      6
  DEL PEAK 40(18P11.31) WILD-TYPE     11     12      4     16
D64V11, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                            24                              11
  CLUS_2                            28                              12
  CLUS_3                            34                               4
  CLUS_4                             6                              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18P11.31) MUTATED       34     14     23     21
  DEL PEAK 40(18P11.31) WILD-TYPE     29      2     11      1
D64V12, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                            34                              29
  CLUS_2                            14                               2
  CLUS_3                            23                              11
  CLUS_4                            21                               1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 41(18Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q12.2) MUTATED       17     55     54     18
  DEL PEAK 41(18Q12.2) WILD-TYPE     28      8     11     25
D65V1, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           17                             28
  CLUS_2                           55                              8
  CLUS_3                           54                             11
  CLUS_4                           18                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q12.2) MUTATED       14     79     51
  DEL PEAK 41(18Q12.2) WILD-TYPE     36     10     26
D65V2, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           14                             36
  CLUS_2                           79                             10
  CLUS_3                           51                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q12.2) MUTATED       53    232    114     17
  DEL PEAK 41(18Q12.2) WILD-TYPE    162     15     18      5
D65V3, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           53                            162
  CLUS_2                          232                             15
  CLUS_3                          114                             18
  CLUS_4                           17                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q12.2) MUTATED       71    123     74
  DEL PEAK 41(18Q12.2) WILD-TYPE     46      6     70
D65V4, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           71                             46
  CLUS_2                          123                              6
  CLUS_3                           74                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q12.2) MUTATED       77    134    106
  DEL PEAK 41(18Q12.2) WILD-TYPE     31     63     71
D65V5, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           77                             31
  CLUS_2                          134                             63
  CLUS_3                          106                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q12.2) MUTATED      146    108     63
  DEL PEAK 41(18Q12.2) WILD-TYPE     82     60     23
D65V6, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                          146                             82
  CLUS_2                          108                             60
  CLUS_3                           63                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q12.2) MUTATED      143     56     83    132
  DEL PEAK 41(18Q12.2) WILD-TYPE     13     72     48     66
D65V7, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                          143                             13
  CLUS_2                           56                             72
  CLUS_3                           83                             48
  CLUS_4                          132                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(18Q12.2) MUTATED       67     58      8     45     77    114
  DEL PEAK 41(18Q12.2) WILD-TYPE     13     28     56     12     13     24
                                vv
clus                             CLUS_7
  DEL PEAK 41(18Q12.2) MUTATED       45
  DEL PEAK 41(18Q12.2) WILD-TYPE     53
D65V8, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           67                             13
  CLUS_2                           58                             28
  CLUS_3                            8                             56
  CLUS_4                           45                             12
  CLUS_5                           77                             13
  CLUS_6                          114                             24
  CLUS_7                           45                             53
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q12.2) MUTATED       93     67     81    121
  DEL PEAK 41(18Q12.2) WILD-TYPE     60     28      5     84
D65V9, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           93                             60
  CLUS_2                           67                             28
  CLUS_3                           81                              5
  CLUS_4                          121                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(18Q12.2) MUTATED       31     47     18     65     21     43
  DEL PEAK 41(18Q12.2) WILD-TYPE     18     27     11     21     56     11
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 41(18Q12.2) MUTATED       50     19     68
  DEL PEAK 41(18Q12.2) WILD-TYPE      7     13     13
D65V10, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           31                             18
  CLUS_2                           47                             27
  CLUS_3                           18                             11
  CLUS_4                           65                             21
  CLUS_5                           21                             56
  CLUS_6                           43                             11
  CLUS_7                           50                              7
  CLUS_8                           19                             13
  CLUS_9                           68                             13
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q12.2) MUTATED       26     32     36     10
  DEL PEAK 41(18Q12.2) WILD-TYPE      9      8      2     12
D65V11, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           26                              9
  CLUS_2                           32                              8
  CLUS_3                           36                              2
  CLUS_4                           10                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q12.2) MUTATED       40     16     26     22
  DEL PEAK 41(18Q12.2) WILD-TYPE     23      0      8      0
D65V12, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           40                             23
  CLUS_2                           16                              0
  CLUS_3                           26                              8
  CLUS_4                           22                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 42(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED       17     56     55     19
  DEL PEAK 42(18Q21.2) WILD-TYPE     28      7     10     24
D66V1, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           17                             28
  CLUS_2                           56                              7
  CLUS_3                           55                             10
  CLUS_4                           19                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       14     79     54
  DEL PEAK 42(18Q21.2) WILD-TYPE     36     10     23
D66V2, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           14                             36
  CLUS_2                           79                             10
  CLUS_3                           54                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED       62    235    117     18
  DEL PEAK 42(18Q21.2) WILD-TYPE    153     12     15      4
D66V3, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           62                            153
  CLUS_2                          235                             12
  CLUS_3                          117                             15
  CLUS_4                           18                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       71    124     86
  DEL PEAK 42(18Q21.2) WILD-TYPE     46      5     58
D66V4, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           71                             46
  CLUS_2                          124                              5
  CLUS_3                           86                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       79    143    111
  DEL PEAK 42(18Q21.2) WILD-TYPE     29     54     66
D66V5, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           79                             29
  CLUS_2                          143                             54
  CLUS_3                          111                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED      154    114     65
  DEL PEAK 42(18Q21.2) WILD-TYPE     74     54     21
D66V6, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                          154                             74
  CLUS_2                          114                             54
  CLUS_3                           65                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED      144     63     88    135
  DEL PEAK 42(18Q21.2) WILD-TYPE     12     65     43     63
D66V7, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                          144                             12
  CLUS_2                           63                             65
  CLUS_3                           88                             43
  CLUS_4                          135                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(18Q21.2) MUTATED       68     62     13     45     80    116
  DEL PEAK 42(18Q21.2) WILD-TYPE     12     24     51     12     10     22
                                vv
clus                             CLUS_7
  DEL PEAK 42(18Q21.2) MUTATED       46
  DEL PEAK 42(18Q21.2) WILD-TYPE     52
D66V8, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           68                             12
  CLUS_2                           62                             24
  CLUS_3                           13                             51
  CLUS_4                           45                             12
  CLUS_5                           80                             10
  CLUS_6                          116                             22
  CLUS_7                           46                             52
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED      103     68     81    126
  DEL PEAK 42(18Q21.2) WILD-TYPE     50     27      5     79
D66V9, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                          103                             50
  CLUS_2                           68                             27
  CLUS_3                           81                              5
  CLUS_4                          126                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(18Q21.2) MUTATED       32     50     22     65     25     44
  DEL PEAK 42(18Q21.2) WILD-TYPE     17     24      7     21     52     10
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 42(18Q21.2) MUTATED       51     19     70
  DEL PEAK 42(18Q21.2) WILD-TYPE      6     13     11
D66V10, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           32                             17
  CLUS_2                           50                             24
  CLUS_3                           22                              7
  CLUS_4                           65                             21
  CLUS_5                           25                             52
  CLUS_6                           44                             10
  CLUS_7                           51                              6
  CLUS_8                           19                             13
  CLUS_9                           70                             11
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED       27     33     37     11
  DEL PEAK 42(18Q21.2) WILD-TYPE      8      7      1     11
D66V11, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           27                              8
  CLUS_2                           33                              7
  CLUS_3                           37                              1
  CLUS_4                           11                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED       41     16     29     22
  DEL PEAK 42(18Q21.2) WILD-TYPE     22      0      5      0
D66V12, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           41                             22
  CLUS_2                           16                              0
  CLUS_3                           29                              5
  CLUS_4                           22                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 43(18Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q22.1) MUTATED       17     56     54     20
  DEL PEAK 43(18Q22.1) WILD-TYPE     28      7     11     23
D67V1, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                           17                             28
  CLUS_2                           56                              7
  CLUS_3                           54                             11
  CLUS_4                           20                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q22.1) MUTATED       15     79     53
  DEL PEAK 43(18Q22.1) WILD-TYPE     35     10     24
D67V2, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                           15                             35
  CLUS_2                           79                             10
  CLUS_3                           53                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q22.1) MUTATED       60    235    114     18
  DEL PEAK 43(18Q22.1) WILD-TYPE    155     12     18      4
D67V3, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                           60                            155
  CLUS_2                          235                             12
  CLUS_3                          114                             18
  CLUS_4                           18                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q22.1) MUTATED       68    124     84
  DEL PEAK 43(18Q22.1) WILD-TYPE     49      5     60
D67V4, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                           68                             49
  CLUS_2                          124                              5
  CLUS_3                           84                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q22.1) MUTATED       77    142    110
  DEL PEAK 43(18Q22.1) WILD-TYPE     31     55     67
D67V5, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                           77                             31
  CLUS_2                          142                             55
  CLUS_3                          110                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q22.1) MUTATED      150    115     64
  DEL PEAK 43(18Q22.1) WILD-TYPE     78     53     22
D67V6, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                          150                             78
  CLUS_2                          115                             53
  CLUS_3                           64                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q22.1) MUTATED      143     62     85    135
  DEL PEAK 43(18Q22.1) WILD-TYPE     13     66     46     63
D67V7, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                          143                             13
  CLUS_2                           62                             66
  CLUS_3                           85                             46
  CLUS_4                          135                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(18Q22.1) MUTATED       67     61     13     43     79    115
  DEL PEAK 43(18Q22.1) WILD-TYPE     13     25     51     14     11     23
                                vv
clus                             CLUS_7
  DEL PEAK 43(18Q22.1) MUTATED       47
  DEL PEAK 43(18Q22.1) WILD-TYPE     51
D67V8, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                           67                             13
  CLUS_2                           61                             25
  CLUS_3                           13                             51
  CLUS_4                           43                             14
  CLUS_5                           79                             11
  CLUS_6                          115                             23
  CLUS_7                           47                             51
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q22.1) MUTATED      101     66     80    126
  DEL PEAK 43(18Q22.1) WILD-TYPE     52     29      6     79
D67V9, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                          101                             52
  CLUS_2                           66                             29
  CLUS_3                           80                              6
  CLUS_4                          126                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(18Q22.1) MUTATED       32     49     21     63     26     43
  DEL PEAK 43(18Q22.1) WILD-TYPE     17     25      8     23     51     11
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 43(18Q22.1) MUTATED       51     19     69
  DEL PEAK 43(18Q22.1) WILD-TYPE      6     13     12
D67V10, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                           32                             17
  CLUS_2                           49                             25
  CLUS_3                           21                              8
  CLUS_4                           63                             23
  CLUS_5                           26                             51
  CLUS_6                           43                             11
  CLUS_7                           51                              6
  CLUS_8                           19                             13
  CLUS_9                           69                             12
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q22.1) MUTATED       27     32     36     11
  DEL PEAK 43(18Q22.1) WILD-TYPE      8      8      2     11
D67V11, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                           27                              8
  CLUS_2                           32                              8
  CLUS_3                           36                              2
  CLUS_4                           11                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q22.1) MUTATED       41     16     29     20
  DEL PEAK 43(18Q22.1) WILD-TYPE     22      0      5      2
D67V12, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                           41                             22
  CLUS_2                           16                              0
  CLUS_3                           29                              5
  CLUS_4                           20                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 44(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED        8     17     10      4
  DEL PEAK 44(19P13.3) WILD-TYPE     37     46     55     39
D68V1, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            8                             37
  CLUS_2                           17                             46
  CLUS_3                           10                             55
  CLUS_4                            4                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED        6     21     12
  DEL PEAK 44(19P13.3) WILD-TYPE     44     68     65
D68V2, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            6                             44
  CLUS_2                           21                             68
  CLUS_3                           12                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       16     47     29      5
  DEL PEAK 44(19P13.3) WILD-TYPE    199    200    103     17
D68V3, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           16                            199
  CLUS_2                           47                            200
  CLUS_3                           29                            103
  CLUS_4                            5                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       15     23     18
  DEL PEAK 44(19P13.3) WILD-TYPE    102    106    126
D68V4, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           15                            102
  CLUS_2                           23                            106
  CLUS_3                           18                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       15     25     27
  DEL PEAK 44(19P13.3) WILD-TYPE     93    172    150
D68V5, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           15                             93
  CLUS_2                           25                            172
  CLUS_3                           27                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       34     22     11
  DEL PEAK 44(19P13.3) WILD-TYPE    194    146     75
D68V6, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           34                            194
  CLUS_2                           22                            146
  CLUS_3                           11                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       26     12     24     34
  DEL PEAK 44(19P13.3) WILD-TYPE    130    116    107    164
D68V7, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           26                            130
  CLUS_2                           12                            116
  CLUS_3                           24                            107
  CLUS_4                           34                            164
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(19P13.3) MUTATED       16     12      3      8     17     26
  DEL PEAK 44(19P13.3) WILD-TYPE     64     74     61     49     73    112
                                vv
clus                             CLUS_7
  DEL PEAK 44(19P13.3) MUTATED       14
  DEL PEAK 44(19P13.3) WILD-TYPE     84
D68V8, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           16                             64
  CLUS_2                           12                             74
  CLUS_3                            3                             61
  CLUS_4                            8                             49
  CLUS_5                           17                             73
  CLUS_6                           26                            112
  CLUS_7                           14                             84
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       26     13     15     34
  DEL PEAK 44(19P13.3) WILD-TYPE    127     82     71    171
D68V9, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           26                            127
  CLUS_2                           13                             82
  CLUS_3                           15                             71
  CLUS_4                           34                            171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(19P13.3) MUTATED        9      7      5     29      5      6
  DEL PEAK 44(19P13.3) WILD-TYPE     40     67     24     57     72     48
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 44(19P13.3) MUTATED        7      6     14
  DEL PEAK 44(19P13.3) WILD-TYPE     50     26     67
D68V10, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            9                             40
  CLUS_2                            7                             67
  CLUS_3                            5                             24
  CLUS_4                           29                             57
  CLUS_5                            5                             72
  CLUS_6                            6                             48
  CLUS_7                            7                             50
  CLUS_8                            6                             26
  CLUS_9                           14                             67
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED        6      7     11      5
  DEL PEAK 44(19P13.3) WILD-TYPE     29     33     27     17
D68V11, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            6                             29
  CLUS_2                            7                             33
  CLUS_3                           11                             27
  CLUS_4                            5                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       10      4      8      7
  DEL PEAK 44(19P13.3) WILD-TYPE     53     12     26     15
D68V12, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           10                             53
  CLUS_2                            4                             12
  CLUS_3                            8                             26
  CLUS_4                            7                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 45(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(20P12.1) MUTATED        5     20     12      7
  DEL PEAK 45(20P12.1) WILD-TYPE     40     43     53     36
D69V1, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                            5                             40
  CLUS_2                           20                             43
  CLUS_3                           12                             53
  CLUS_4                            7                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(20P12.1) MUTATED        4     28     12
  DEL PEAK 45(20P12.1) WILD-TYPE     46     61     65
D69V2, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                            4                             46
  CLUS_2                           28                             61
  CLUS_3                           12                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(20P12.1) MUTATED       16     83     37      0
  DEL PEAK 45(20P12.1) WILD-TYPE    199    164     95     22
D69V3, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           16                            199
  CLUS_2                           83                            164
  CLUS_3                           37                             95
  CLUS_4                            0                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(20P12.1) MUTATED       23     50     19
  DEL PEAK 45(20P12.1) WILD-TYPE     94     79    125
D69V4, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           23                             94
  CLUS_2                           50                             79
  CLUS_3                           19                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(20P12.1) MUTATED       18     51     42
  DEL PEAK 45(20P12.1) WILD-TYPE     90    146    135
D69V5, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           18                             90
  CLUS_2                           51                            146
  CLUS_3                           42                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(20P12.1) MUTATED       50     42     19
  DEL PEAK 45(20P12.1) WILD-TYPE    178    126     67
D69V6, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           50                            178
  CLUS_2                           42                            126
  CLUS_3                           19                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(20P12.1) MUTATED       55     21     26     33
  DEL PEAK 45(20P12.1) WILD-TYPE    101    107    105    165
D69V7, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           55                            101
  CLUS_2                           21                            107
  CLUS_3                           26                            105
  CLUS_4                           33                            165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(20P12.1) MUTATED       25     21      0     14     29     36
  DEL PEAK 45(20P12.1) WILD-TYPE     55     65     64     43     61    102
                                vv
clus                             CLUS_7
  DEL PEAK 45(20P12.1) MUTATED       10
  DEL PEAK 45(20P12.1) WILD-TYPE     88
D69V8, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           25                             55
  CLUS_2                           21                             65
  CLUS_3                            0                             64
  CLUS_4                           14                             43
  CLUS_5                           29                             61
  CLUS_6                           36                            102
  CLUS_7                           10                             88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(20P12.1) MUTATED       33     17     31     34
  DEL PEAK 45(20P12.1) WILD-TYPE    120     78     55    171
D69V9, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           33                            120
  CLUS_2                           17                             78
  CLUS_3                           31                             55
  CLUS_4                           34                            171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(20P12.1) MUTATED        9     16      6     30      6     11
  DEL PEAK 45(20P12.1) WILD-TYPE     40     58     23     56     71     43
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 45(20P12.1) MUTATED       16      1     20
  DEL PEAK 45(20P12.1) WILD-TYPE     41     31     61
D69V10, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                            9                             40
  CLUS_2                           16                             58
  CLUS_3                            6                             23
  CLUS_4                           30                             56
  CLUS_5                            6                             71
  CLUS_6                           11                             43
  CLUS_7                           16                             41
  CLUS_8                            1                             31
  CLUS_9                           20                             61
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(20P12.1) MUTATED        6      8     15      4
  DEL PEAK 45(20P12.1) WILD-TYPE     29     32     23     18
D69V11, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                            6                             29
  CLUS_2                            8                             32
  CLUS_3                           15                             23
  CLUS_4                            4                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(20P12.1) MUTATED       10      6     12      5
  DEL PEAK 45(20P12.1) WILD-TYPE     53     10     22     17
D69V12, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           10                             53
  CLUS_2                            6                             10
  CLUS_3                           12                             22
  CLUS_4                            5                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 46(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(21Q11.2) MUTATED       11     30     24      8
  DEL PEAK 46(21Q11.2) WILD-TYPE     34     33     41     35
D70V1, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           11                             34
  CLUS_2                           30                             33
  CLUS_3                           24                             41
  CLUS_4                            8                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(21Q11.2) MUTATED       11     44     18
  DEL PEAK 46(21Q11.2) WILD-TYPE     39     45     59
D70V2, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           11                             39
  CLUS_2                           44                             45
  CLUS_3                           18                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(21Q11.2) MUTATED       37    117     46     14
  DEL PEAK 46(21Q11.2) WILD-TYPE    178    130     86      8
D70V3, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           37                            178
  CLUS_2                          117                            130
  CLUS_3                           46                             86
  CLUS_4                           14                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(21Q11.2) MUTATED       37     60     42
  DEL PEAK 46(21Q11.2) WILD-TYPE     80     69    102
D70V4, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           37                             80
  CLUS_2                           60                             69
  CLUS_3                           42                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(21Q11.2) MUTATED       32     75     62
  DEL PEAK 46(21Q11.2) WILD-TYPE     76    122    115
D70V5, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           32                             76
  CLUS_2                           75                            122
  CLUS_3                           62                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(21Q11.2) MUTATED       74     63     32
  DEL PEAK 46(21Q11.2) WILD-TYPE    154    105     54
D70V6, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           74                            154
  CLUS_2                           63                            105
  CLUS_3                           32                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(21Q11.2) MUTATED       77     32     40     63
  DEL PEAK 46(21Q11.2) WILD-TYPE     79     96     91    135
D70V7, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           77                             79
  CLUS_2                           32                             96
  CLUS_3                           40                             91
  CLUS_4                           63                            135
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(21Q11.2) MUTATED       35     27      9     23     38     55
  DEL PEAK 46(21Q11.2) WILD-TYPE     45     59     55     34     52     83
                                vv
clus                             CLUS_7
  DEL PEAK 46(21Q11.2) MUTATED       25
  DEL PEAK 46(21Q11.2) WILD-TYPE     73
D70V8, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           35                             45
  CLUS_2                           27                             59
  CLUS_3                            9                             55
  CLUS_4                           23                             34
  CLUS_5                           38                             52
  CLUS_6                           55                             83
  CLUS_7                           25                             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(21Q11.2) MUTATED       48     32     43     65
  DEL PEAK 46(21Q11.2) WILD-TYPE    105     63     43    140
D70V9, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           48                            105
  CLUS_2                           32                             63
  CLUS_3                           43                             43
  CLUS_4                           65                            140
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(21Q11.2) MUTATED       17     20      8     31     17     25
  DEL PEAK 46(21Q11.2) WILD-TYPE     32     54     21     55     60     29
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 46(21Q11.2) MUTATED       28     10     32
  DEL PEAK 46(21Q11.2) WILD-TYPE     29     22     49
D70V10, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           17                             32
  CLUS_2                           20                             54
  CLUS_3                            8                             21
  CLUS_4                           31                             55
  CLUS_5                           17                             60
  CLUS_6                           25                             29
  CLUS_7                           28                             29
  CLUS_8                           10                             22
  CLUS_9                           32                             49
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(21Q11.2) MUTATED       15     15     22      7
  DEL PEAK 46(21Q11.2) WILD-TYPE     20     25     16     15
D70V11, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           15                             20
  CLUS_2                           15                             25
  CLUS_3                           22                             16
  CLUS_4                            7                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(21Q11.2) MUTATED       21      7     19     12
  DEL PEAK 46(21Q11.2) WILD-TYPE     42      9     15     10
D70V12, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           21                             42
  CLUS_2                            7                              9
  CLUS_3                           19                             15
  CLUS_4                           12                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = DEL PEAK 47(21Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q21.1) MUTATED       11     29     23      7
  DEL PEAK 47(21Q21.1) WILD-TYPE     34     34     42     36
D71V1, multiclass
        clus
vv       DEL PEAK 47(21Q21.1) MUTATED DEL PEAK 47(21Q21.1) WILD-TYPE
  CLUS_1                           11                             34
  CLUS_2                           29                             34
  CLUS_3                           23                             42
  CLUS_4                            7                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(21Q21.1) MUTATED       10     42     18
  DEL PEAK 47(21Q21.1) WILD-TYPE     40     47     59
D71V2, multiclass
        clus
vv       DEL PEAK 47(21Q21.1) MUTATED DEL PEAK 47(21Q21.1) WILD-TYPE
  CLUS_1                           10                             40
  CLUS_2                           42                             47
  CLUS_3                           18                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q21.1) MUTATED       37    114     45     14
  DEL PEAK 47(21Q21.1) WILD-TYPE    178    133     87      8
D71V3, multiclass
        clus
vv       DEL PEAK 47(21Q21.1) MUTATED DEL PEAK 47(21Q21.1) WILD-TYPE
  CLUS_1                           37                            178
  CLUS_2                          114                            133
  CLUS_3                           45                             87
  CLUS_4                           14                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(21Q21.1) MUTATED       37     61     41
  DEL PEAK 47(21Q21.1) WILD-TYPE     80     68    103
D71V4, multiclass
        clus
vv       DEL PEAK 47(21Q21.1) MUTATED DEL PEAK 47(21Q21.1) WILD-TYPE
  CLUS_1                           37                             80
  CLUS_2                           61                             68
  CLUS_3                           41                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(21Q21.1) MUTATED       34     73     61
  DEL PEAK 47(21Q21.1) WILD-TYPE     74    124    116
D71V5, multiclass
        clus
vv       DEL PEAK 47(21Q21.1) MUTATED DEL PEAK 47(21Q21.1) WILD-TYPE
  CLUS_1                           34                             74
  CLUS_2                           73                            124
  CLUS_3                           61                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(21Q21.1) MUTATED       73     61     34
  DEL PEAK 47(21Q21.1) WILD-TYPE    155    107     52
D71V6, multiclass
        clus
vv       DEL PEAK 47(21Q21.1) MUTATED DEL PEAK 47(21Q21.1) WILD-TYPE
  CLUS_1                           73                            155
  CLUS_2                           61                            107
  CLUS_3                           34                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q21.1) MUTATED       76     31     39     62
  DEL PEAK 47(21Q21.1) WILD-TYPE     80     97     92    136
D71V7, multiclass
        clus
vv       DEL PEAK 47(21Q21.1) MUTATED DEL PEAK 47(21Q21.1) WILD-TYPE
  CLUS_1                           76                             80
  CLUS_2                           31                             97
  CLUS_3                           39                             92
  CLUS_4                           62                            136
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(21Q21.1) MUTATED       32     27     10     21     40     55
  DEL PEAK 47(21Q21.1) WILD-TYPE     48     59     54     36     50     83
                                vv
clus                             CLUS_7
  DEL PEAK 47(21Q21.1) MUTATED       23
  DEL PEAK 47(21Q21.1) WILD-TYPE     75
D71V8, multiclass
        clus
vv       DEL PEAK 47(21Q21.1) MUTATED DEL PEAK 47(21Q21.1) WILD-TYPE
  CLUS_1                           32                             48
  CLUS_2                           27                             59
  CLUS_3                           10                             54
  CLUS_4                           21                             36
  CLUS_5                           40                             50
  CLUS_6                           55                             83
  CLUS_7                           23                             75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q21.1) MUTATED       46     33     42     63
  DEL PEAK 47(21Q21.1) WILD-TYPE    107     62     44    142
D71V9, multiclass
        clus
vv       DEL PEAK 47(21Q21.1) MUTATED DEL PEAK 47(21Q21.1) WILD-TYPE
  CLUS_1                           46                            107
  CLUS_2                           33                             62
  CLUS_3                           42                             44
  CLUS_4                           63                            142
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(21Q21.1) MUTATED       17     21      7     32     15     23
  DEL PEAK 47(21Q21.1) WILD-TYPE     32     53     22     54     62     31
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 47(21Q21.1) MUTATED       28      8     33
  DEL PEAK 47(21Q21.1) WILD-TYPE     29     24     48
D71V10, multiclass
        clus
vv       DEL PEAK 47(21Q21.1) MUTATED DEL PEAK 47(21Q21.1) WILD-TYPE
  CLUS_1                           17                             32
  CLUS_2                           21                             53
  CLUS_3                            7                             22
  CLUS_4                           32                             54
  CLUS_5                           15                             62
  CLUS_6                           23                             31
  CLUS_7                           28                             29
  CLUS_8                            8                             24
  CLUS_9                           33                             48
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q21.1) MUTATED       15     16     23      6
  DEL PEAK 47(21Q21.1) WILD-TYPE     20     24     15     16
D71V11, multiclass
        clus
vv       DEL PEAK 47(21Q21.1) MUTATED DEL PEAK 47(21Q21.1) WILD-TYPE
  CLUS_1                           15                             20
  CLUS_2                           16                             24
  CLUS_3                           23                             15
  CLUS_4                            6                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q21.1) MUTATED       19      9     20     12
  DEL PEAK 47(21Q21.1) WILD-TYPE     44      7     14     10
D71V12, multiclass
        clus
vv       DEL PEAK 47(21Q21.1) MUTATED DEL PEAK 47(21Q21.1) WILD-TYPE
  CLUS_1                           19                             44
  CLUS_2                            9                              7
  CLUS_3                           20                             14
  CLUS_4                           12                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = DEL PEAK 48(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q13.32) MUTATED       13     31     33      9
  DEL PEAK 48(22Q13.32) WILD-TYPE     32     32     32     34
D72V1, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            13                              32
  CLUS_2                            31                              32
  CLUS_3                            33                              32
  CLUS_4                             9                              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q13.32) MUTATED        7     47     32
  DEL PEAK 48(22Q13.32) WILD-TYPE     43     42     45
D72V2, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                             7                              43
  CLUS_2                            47                              42
  CLUS_3                            32                              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q13.32) MUTATED       29    130     55     14
  DEL PEAK 48(22Q13.32) WILD-TYPE    186    117     77      8
D72V3, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            29                             186
  CLUS_2                           130                             117
  CLUS_3                            55                              77
  CLUS_4                            14                               8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q13.32) MUTATED       44     55     40
  DEL PEAK 48(22Q13.32) WILD-TYPE     73     74    104
D72V4, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            44                              73
  CLUS_2                            55                              74
  CLUS_3                            40                             104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q13.32) MUTATED       41     79     53
  DEL PEAK 48(22Q13.32) WILD-TYPE     67    118    124
D72V5, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            41                              67
  CLUS_2                            79                             118
  CLUS_3                            53                             124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q13.32) MUTATED       73     66     34
  DEL PEAK 48(22Q13.32) WILD-TYPE    155    102     52
D72V6, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            73                             155
  CLUS_2                            66                             102
  CLUS_3                            34                              52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q13.32) MUTATED       69     35     46     77
  DEL PEAK 48(22Q13.32) WILD-TYPE     87     93     85    121
D72V7, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            69                              87
  CLUS_2                            35                              93
  CLUS_3                            46                              85
  CLUS_4                            77                             121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 48(22Q13.32) MUTATED       34     29      8     24     38     67
  DEL PEAK 48(22Q13.32) WILD-TYPE     46     57     56     33     52     71
                                 vv
clus                              CLUS_7
  DEL PEAK 48(22Q13.32) MUTATED       27
  DEL PEAK 48(22Q13.32) WILD-TYPE     71
D72V8, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            34                              46
  CLUS_2                            29                              57
  CLUS_3                             8                              56
  CLUS_4                            24                              33
  CLUS_5                            38                              52
  CLUS_6                            67                              71
  CLUS_7                            27                              71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q13.32) MUTATED       47     37     43     72
  DEL PEAK 48(22Q13.32) WILD-TYPE    106     58     43    133
D72V9, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            47                             106
  CLUS_2                            37                              58
  CLUS_3                            43                              43
  CLUS_4                            72                             133
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 48(22Q13.32) MUTATED       16     26      3     34     17     23
  DEL PEAK 48(22Q13.32) WILD-TYPE     33     48     26     52     60     31
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 48(22Q13.32) MUTATED       29     12     39
  DEL PEAK 48(22Q13.32) WILD-TYPE     28     20     42
D72V10, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            16                              33
  CLUS_2                            26                              48
  CLUS_3                             3                              26
  CLUS_4                            34                              52
  CLUS_5                            17                              60
  CLUS_6                            23                              31
  CLUS_7                            29                              28
  CLUS_8                            12                              20
  CLUS_9                            39                              42
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q13.32) MUTATED       15     17     22      8
  DEL PEAK 48(22Q13.32) WILD-TYPE     20     23     16     14
D72V11, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            15                              20
  CLUS_2                            17                              23
  CLUS_3                            22                              16
  CLUS_4                             8                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q13.32) MUTATED       25      6     17     14
  DEL PEAK 48(22Q13.32) WILD-TYPE     38     10     17      8
D72V12, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            25                              38
  CLUS_2                             6                              10
  CLUS_3                            17                              17
  CLUS_4                            14                               8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
