[1] "ofn"        "-oTDLBC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/DLBC-TP/22541055/DLBC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/DLBC-TP/22516373/transformed.cor.cli.txt"

nPatients in clinical file=48, in cluster file=48, common to both=48
[1] "Reduce the number of clustering variables from 40 to 39."
[1] 39 48
[1] "AMP PEAK  1(1Q24.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q24.2) MUTATED AMP PEAK  1(1Q24.2) WILD-TYPE 
                           16                            32 
  AMP PEAK  1(1Q24.2) MUTATED AMP PEAK  1(1Q24.2) WILD-TYPE 
                           16                            32 
[1] "AMP PEAK  2(2P16.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE 
                           16                            32 
  AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE 
                           16                            32 
[1] "AMP PEAK  3(3Q27.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE 
                           14                            34 
  AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE 
                           14                            34 
[1] "AMP PEAK  4(3Q29) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3Q29) MUTATED AMP PEAK  4(3Q29) WILD-TYPE 
                         15                          33 
  AMP PEAK  4(3Q29) MUTATED AMP PEAK  4(3Q29) WILD-TYPE 
                         15                          33 
[1] "AMP PEAK  5(5P13.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE 
                            8                            40 
  AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE 
                            8                            40 
[1] "AMP PEAK  6(7P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(7P22.3) MUTATED AMP PEAK  6(7P22.3) WILD-TYPE 
                           16                            32 
  AMP PEAK  6(7P22.3) MUTATED AMP PEAK  6(7P22.3) WILD-TYPE 
                           16                            32 
[1] "AMP PEAK  7(7Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(7Q21.3) MUTATED AMP PEAK  7(7Q21.3) WILD-TYPE 
                           15                            33 
  AMP PEAK  7(7Q21.3) MUTATED AMP PEAK  7(7Q21.3) WILD-TYPE 
                           15                            33 
[1] "AMP PEAK  8(8Q24.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(8Q24.23) MUTATED AMP PEAK  8(8Q24.23) WILD-TYPE 
                            14                             34 
  AMP PEAK  8(8Q24.23) MUTATED AMP PEAK  8(8Q24.23) WILD-TYPE 
                            14                             34 
[1] "AMP PEAK  9(12Q21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(12Q21.1) MUTATED AMP PEAK  9(12Q21.1) WILD-TYPE 
                            14                             34 
  AMP PEAK  9(12Q21.1) MUTATED AMP PEAK  9(12Q21.1) WILD-TYPE 
                            14                             34 
[1] "AMP PEAK 11(16P12.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(16P12.2) MUTATED AMP PEAK 11(16P12.2) WILD-TYPE 
                            10                             38 
  AMP PEAK 11(16P12.2) MUTATED AMP PEAK 11(16P12.2) WILD-TYPE 
                            10                             38 
[1] "AMP PEAK 12(18Q21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(18Q21.2) MUTATED AMP PEAK 12(18Q21.2) WILD-TYPE 
                            16                             32 
  AMP PEAK 12(18Q21.2) MUTATED AMP PEAK 12(18Q21.2) WILD-TYPE 
                            16                             32 
[1] "AMP PEAK 13(19Q13.43) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(19Q13.43) MUTATED AMP PEAK 13(19Q13.43) WILD-TYPE 
                             10                              38 
  AMP PEAK 13(19Q13.43) MUTATED AMP PEAK 13(19Q13.43) WILD-TYPE 
                             10                              38 
[1] "AMP PEAK 14(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(XQ28) MUTATED AMP PEAK 14(XQ28) WILD-TYPE 
                          8                          40 
  AMP PEAK 14(XQ28) MUTATED AMP PEAK 14(XQ28) WILD-TYPE 
                          8                          40 
[1] "DEL PEAK  1(1P36.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            11                             37 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            11                             37 
[1] "DEL PEAK  2(1P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE 
                           12                            36 
  DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE 
                           12                            36 
[1] "DEL PEAK  3(1Q43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                         10                          38 
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                         10                          38 
[1] "DEL PEAK  4(2Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE 
                            8                            40 
  DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE 
                            8                            40 
[1] "DEL PEAK  5(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE 
                             8                             40 
  DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE 
                             8                             40 
[1] "DEL PEAK  6(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                           10                            38 
  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                           10                            38 
[1] "DEL PEAK  7(5Q33.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(5Q33.3) MUTATED DEL PEAK  7(5Q33.3) WILD-TYPE 
                            4                            44 
  DEL PEAK  7(5Q33.3) MUTATED DEL PEAK  7(5Q33.3) WILD-TYPE 
                            4                            44 
[1] "DEL PEAK  8(6P21.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(6P21.32) MUTATED DEL PEAK  8(6P21.32) WILD-TYPE 
                             6                             42 
  DEL PEAK  8(6P21.32) MUTATED DEL PEAK  8(6P21.32) WILD-TYPE 
                             6                             42 
[1] "DEL PEAK  9(6Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6Q14.1) MUTATED DEL PEAK  9(6Q14.1) WILD-TYPE 
                           17                            31 
  DEL PEAK  9(6Q14.1) MUTATED DEL PEAK  9(6Q14.1) WILD-TYPE 
                           17                            31 
[1] "DEL PEAK 10(6Q22.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6Q22.32) MUTATED DEL PEAK 10(6Q22.32) WILD-TYPE 
                            16                             32 
  DEL PEAK 10(6Q22.32) MUTATED DEL PEAK 10(6Q22.32) WILD-TYPE 
                            16                             32 
[1] "DEL PEAK 11(6Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q23.3) MUTATED DEL PEAK 11(6Q23.3) WILD-TYPE 
                           16                            32 
  DEL PEAK 11(6Q23.3) MUTATED DEL PEAK 11(6Q23.3) WILD-TYPE 
                           16                            32 
[1] "DEL PEAK 12(7Q33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(7Q33) MUTATED DEL PEAK 12(7Q33) WILD-TYPE 
                          5                          43 
  DEL PEAK 12(7Q33) MUTATED DEL PEAK 12(7Q33) WILD-TYPE 
                          5                          43 
[1] "DEL PEAK 13(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE 
                           12                            36 
  DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE 
                           12                            36 
[1] "DEL PEAK 14(8Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(8Q12.1) MUTATED DEL PEAK 14(8Q12.1) WILD-TYPE 
                            9                            39 
  DEL PEAK 14(8Q12.1) MUTATED DEL PEAK 14(8Q12.1) WILD-TYPE 
                            9                            39 
[1] "DEL PEAK 15(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                           17                            31 
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                           17                            31 
[1] "DEL PEAK 16(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                              7                              41 
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                              7                              41 
[1] "DEL PEAK 17(12P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(12P13.2) MUTATED DEL PEAK 17(12P13.2) WILD-TYPE 
                             8                             40 
  DEL PEAK 17(12P13.2) MUTATED DEL PEAK 17(12P13.2) WILD-TYPE 
                             8                             40 
[1] "DEL PEAK 18(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE 
                             7                             41 
  DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE 
                             7                             41 
[1] "DEL PEAK 19(15Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(15Q21.1) MUTATED DEL PEAK 19(15Q21.1) WILD-TYPE 
                            13                             35 
  DEL PEAK 19(15Q21.1) MUTATED DEL PEAK 19(15Q21.1) WILD-TYPE 
                            13                             35 
[1] "DEL PEAK 20(16P13.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(16P13.13) MUTATED DEL PEAK 20(16P13.13) WILD-TYPE 
                              6                              42 
  DEL PEAK 20(16P13.13) MUTATED DEL PEAK 20(16P13.13) WILD-TYPE 
                              6                              42 
[1] "DEL PEAK 21(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                             5                             43 
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                             5                             43 
[1] "DEL PEAK 22(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE 
                            13                             35 
  DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE 
                            13                             35 
[1] "DEL PEAK 23(17Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(17Q24.1) MUTATED DEL PEAK 23(17Q24.1) WILD-TYPE 
                             8                             40 
  DEL PEAK 23(17Q24.1) MUTATED DEL PEAK 23(17Q24.1) WILD-TYPE 
                             8                             40 
[1] "DEL PEAK 24(19P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(19P13.2) MUTATED DEL PEAK 24(19P13.2) WILD-TYPE 
                             4                             44 
  DEL PEAK 24(19P13.2) MUTATED DEL PEAK 24(19P13.2) WILD-TYPE 
                             4                             44 
[1] "DEL PEAK 25(19Q13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(19Q13.2) MUTATED DEL PEAK 25(19Q13.2) WILD-TYPE 
                             5                             43 
  DEL PEAK 25(19Q13.2) MUTATED DEL PEAK 25(19Q13.2) WILD-TYPE 
                             5                             43 
[1] "DEL PEAK 26(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE 
                              7                              41 
  DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE 
                              7                              41 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 48 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 48 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=6, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q24.2) MUTATED        6      3      7
  AMP PEAK  1(1Q24.2) WILD-TYPE     14      4     14
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q24.2) MUTATED AMP PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           6                            14
  CLUS_2                           3                             4
  CLUS_3                           7                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q24.2) MUTATED        1      5      8      2
  AMP PEAK  1(1Q24.2) WILD-TYPE      8      8     11      5
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q24.2) MUTATED AMP PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           5                             8
  CLUS_3                           8                            11
  CLUS_4                           2                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q24.2) MUTATED        2      1      3      1      2      0
  AMP PEAK  1(1Q24.2) WILD-TYPE      4      4      2      5      4      5
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q24.2) MUTATED AMP PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           2                             4
  CLUS_2                           1                             4
  CLUS_3                           3                             2
  CLUS_4                           1                             5
  CLUS_5                           2                             4
  CLUS_6                           0                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q24.2) MUTATED        1      3      5
  AMP PEAK  1(1Q24.2) WILD-TYPE      5     12      7
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q24.2) MUTATED AMP PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           3                            12
  CLUS_3                           5                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q24.2) MUTATED        2      5      2      2      4      1
  AMP PEAK  1(1Q24.2) WILD-TYPE      8      7      7      1      4      5
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q24.2) MUTATED AMP PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           2                             8
  CLUS_2                           5                             7
  CLUS_3                           2                             7
  CLUS_4                           2                             1
  CLUS_5                           4                             4
  CLUS_6                           1                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q24.2) MUTATED        8      5      2      1
  AMP PEAK  1(1Q24.2) WILD-TYPE     14      6      5      7
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q24.2) MUTATED AMP PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           8                            14
  CLUS_2                           5                             6
  CLUS_3                           2                             5
  CLUS_4                           1                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q24.2) MUTATED        5      7      4
  AMP PEAK  1(1Q24.2) WILD-TYPE     11      9     11
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q24.2) MUTATED AMP PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           5                            11
  CLUS_2                           7                             9
  CLUS_3                           4                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q24.2) MUTATED        1      4      4      4      3
  AMP PEAK  1(1Q24.2) WILD-TYPE      8      8      4      8      3
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q24.2) MUTATED AMP PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           4                             8
  CLUS_3                           4                             4
  CLUS_4                           4                             8
  CLUS_5                           3                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q24.2) MUTATED        3      4      3      4
  AMP PEAK  1(1Q24.2) WILD-TYPE      6      6      6     10
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q24.2) MUTATED AMP PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           4                             6
  CLUS_3                           3                             6
  CLUS_4                           4                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q24.2) MUTATED        3      4      2      5
  AMP PEAK  1(1Q24.2) WILD-TYPE      5     11      3      9
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q24.2) MUTATED AMP PEAK  1(1Q24.2) WILD-TYPE
  CLUS_1                           3                             5
  CLUS_2                           4                            11
  CLUS_3                           2                             3
  CLUS_4                           5                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(2P16.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P16.1) MUTATED        8      1      7
  AMP PEAK  2(2P16.1) WILD-TYPE     12      6     14
D2V1, multiclass
        clus
vv       AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE
  CLUS_1                           8                            12
  CLUS_2                           1                             6
  CLUS_3                           7                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2P16.1) MUTATED        3      1      9      3
  AMP PEAK  2(2P16.1) WILD-TYPE      6     12     10      4
D2V2, multiclass
        clus
vv       AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           1                            12
  CLUS_3                           9                            10
  CLUS_4                           3                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(2P16.1) MUTATED        4      1      1      0      4      1
  AMP PEAK  2(2P16.1) WILD-TYPE      2      4      4      6      2      4
D2V3, multiclass
        clus
vv       AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE
  CLUS_1                           4                             2
  CLUS_2                           1                             4
  CLUS_3                           1                             4
  CLUS_4                           0                             6
  CLUS_5                           4                             2
  CLUS_6                           1                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P16.1) MUTATED        2      7      2
  AMP PEAK  2(2P16.1) WILD-TYPE      4      8     10
D2V4, multiclass
        clus
vv       AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE
  CLUS_1                           2                             4
  CLUS_2                           7                             8
  CLUS_3                           2                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(2P16.1) MUTATED        4      1      1      2      7      1
  AMP PEAK  2(2P16.1) WILD-TYPE      6     11      8      1      1      5
D2V5, multiclass
        clus
vv       AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE
  CLUS_1                           4                             6
  CLUS_2                           1                            11
  CLUS_3                           1                             8
  CLUS_4                           2                             1
  CLUS_5                           7                             1
  CLUS_6                           1                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2P16.1) MUTATED       10      1      4      1
  AMP PEAK  2(2P16.1) WILD-TYPE     12     10      3      7
D2V6, multiclass
        clus
vv       AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE
  CLUS_1                          10                            12
  CLUS_2                           1                            10
  CLUS_3                           4                             3
  CLUS_4                           1                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2P16.1) MUTATED        7      6      3
  AMP PEAK  2(2P16.1) WILD-TYPE      9     10     12
D2V7, multiclass
        clus
vv       AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE
  CLUS_1                           7                             9
  CLUS_2                           6                            10
  CLUS_3                           3                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(2P16.1) MUTATED        1      3      6      2      4
  AMP PEAK  2(2P16.1) WILD-TYPE      8      9      2     10      2
D2V8, multiclass
        clus
vv       AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           3                             9
  CLUS_3                           6                             2
  CLUS_4                           2                            10
  CLUS_5                           4                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2P16.1) MUTATED        5      0      3      6
  AMP PEAK  2(2P16.1) WILD-TYPE      4     10      6      8
D2V9, multiclass
        clus
vv       AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE
  CLUS_1                           5                             4
  CLUS_2                           0                            10
  CLUS_3                           3                             6
  CLUS_4                           6                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2P16.1) MUTATED        4      3      1      6
  AMP PEAK  2(2P16.1) WILD-TYPE      4     12      4      8
D2V10, multiclass
        clus
vv       AMP PEAK  2(2P16.1) MUTATED AMP PEAK  2(2P16.1) WILD-TYPE
  CLUS_1                           4                             4
  CLUS_2                           3                            12
  CLUS_3                           1                             4
  CLUS_4                           6                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(3Q27.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q27.3) MUTATED        1      1     12
  AMP PEAK  3(3Q27.3) WILD-TYPE     19      6      9
D3V1, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                           1                            19
  CLUS_2                           1                             6
  CLUS_3                          12                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q27.3) MUTATED        1      5      5      3
  AMP PEAK  3(3Q27.3) WILD-TYPE      8      8     14      4
D3V2, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           5                             8
  CLUS_3                           5                            14
  CLUS_4                           3                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q27.3) MUTATED        2      2      2      3      0      1
  AMP PEAK  3(3Q27.3) WILD-TYPE      4      3      3      3      6      4
D3V3, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                           2                             4
  CLUS_2                           2                             3
  CLUS_3                           2                             3
  CLUS_4                           3                             3
  CLUS_5                           0                             6
  CLUS_6                           1                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q27.3) MUTATED        1      3      6
  AMP PEAK  3(3Q27.3) WILD-TYPE      5     12      6
D3V4, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           3                            12
  CLUS_3                           6                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q27.3) MUTATED        3      6      2      2      0      1
  AMP PEAK  3(3Q27.3) WILD-TYPE      7      6      7      1      8      5
D3V5, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                           3                             7
  CLUS_2                           6                             6
  CLUS_3                           2                             7
  CLUS_4                           2                             1
  CLUS_5                           0                             8
  CLUS_6                           1                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q27.3) MUTATED        4      6      3      1
  AMP PEAK  3(3Q27.3) WILD-TYPE     18      5      4      7
D3V6, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                           4                            18
  CLUS_2                           6                             5
  CLUS_3                           3                             4
  CLUS_4                           1                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q27.3) MUTATED        6      2      6
  AMP PEAK  3(3Q27.3) WILD-TYPE     10     14      9
D3V7, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                           6                            10
  CLUS_2                           2                            14
  CLUS_3                           6                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(3Q27.3) MUTATED        2      3      4      5      0
  AMP PEAK  3(3Q27.3) WILD-TYPE      7      9      4      7      6
D3V8, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                           3                             9
  CLUS_3                           4                             4
  CLUS_4                           5                             7
  CLUS_5                           0                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q27.3) MUTATED        4      3      3      3
  AMP PEAK  3(3Q27.3) WILD-TYPE      5      7      6     11
D3V9, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                           4                             5
  CLUS_2                           3                             7
  CLUS_3                           3                             6
  CLUS_4                           3                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3Q27.3) MUTATED        4      4      2      3
  AMP PEAK  3(3Q27.3) WILD-TYPE      4     11      3     11
D3V10, multiclass
        clus
vv       AMP PEAK  3(3Q27.3) MUTATED AMP PEAK  3(3Q27.3) WILD-TYPE
  CLUS_1                           4                             4
  CLUS_2                           4                            11
  CLUS_3                           2                             3
  CLUS_4                           3                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(3Q29) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q29) MUTATED        1      1     13
  AMP PEAK  4(3Q29) WILD-TYPE     19      6      8
D4V1, multiclass
        clus
vv       AMP PEAK  4(3Q29) MUTATED AMP PEAK  4(3Q29) WILD-TYPE
  CLUS_1                         1                          19
  CLUS_2                         1                           6
  CLUS_3                        13                           8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q29) MUTATED        1      6      5      3
  AMP PEAK  4(3Q29) WILD-TYPE      8      7     14      4
D4V2, multiclass
        clus
vv       AMP PEAK  4(3Q29) MUTATED AMP PEAK  4(3Q29) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         6                           7
  CLUS_3                         5                          14
  CLUS_4                         3                           4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q29) MUTATED        1      2      2      3      0      1
  AMP PEAK  4(3Q29) WILD-TYPE      5      3      3      3      6      4
D4V3, multiclass
        clus
vv       AMP PEAK  4(3Q29) MUTATED AMP PEAK  4(3Q29) WILD-TYPE
  CLUS_1                         1                           5
  CLUS_2                         2                           3
  CLUS_3                         2                           3
  CLUS_4                         3                           3
  CLUS_5                         0                           6
  CLUS_6                         1                           4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q29) MUTATED        1      2      6
  AMP PEAK  4(3Q29) WILD-TYPE      5     13      6
D4V4, multiclass
        clus
vv       AMP PEAK  4(3Q29) MUTATED AMP PEAK  4(3Q29) WILD-TYPE
  CLUS_1                         1                           5
  CLUS_2                         2                          13
  CLUS_3                         6                           6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q29) MUTATED        2      7      2      2      1      1
  AMP PEAK  4(3Q29) WILD-TYPE      8      5      7      1      7      5
D4V5, multiclass
        clus
vv       AMP PEAK  4(3Q29) MUTATED AMP PEAK  4(3Q29) WILD-TYPE
  CLUS_1                         2                           8
  CLUS_2                         7                           5
  CLUS_3                         2                           7
  CLUS_4                         2                           1
  CLUS_5                         1                           7
  CLUS_6                         1                           5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q29) MUTATED        5      7      2      1
  AMP PEAK  4(3Q29) WILD-TYPE     17      4      5      7
D4V6, multiclass
        clus
vv       AMP PEAK  4(3Q29) MUTATED AMP PEAK  4(3Q29) WILD-TYPE
  CLUS_1                         5                          17
  CLUS_2                         7                           4
  CLUS_3                         2                           5
  CLUS_4                         1                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q29) MUTATED        5      3      7
  AMP PEAK  4(3Q29) WILD-TYPE     11     13      8
D4V7, multiclass
        clus
vv       AMP PEAK  4(3Q29) MUTATED AMP PEAK  4(3Q29) WILD-TYPE
  CLUS_1                         5                          11
  CLUS_2                         3                          13
  CLUS_3                         7                           8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3Q29) MUTATED        2      4      3      6      0
  AMP PEAK  4(3Q29) WILD-TYPE      7      8      5      6      6
D4V8, multiclass
        clus
vv       AMP PEAK  4(3Q29) MUTATED AMP PEAK  4(3Q29) WILD-TYPE
  CLUS_1                         2                           7
  CLUS_2                         4                           8
  CLUS_3                         3                           5
  CLUS_4                         6                           6
  CLUS_5                         0                           6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q29) MUTATED        3      3      4      3
  AMP PEAK  4(3Q29) WILD-TYPE      6      7      5     11
D4V9, multiclass
        clus
vv       AMP PEAK  4(3Q29) MUTATED AMP PEAK  4(3Q29) WILD-TYPE
  CLUS_1                         3                           6
  CLUS_2                         3                           7
  CLUS_3                         4                           5
  CLUS_4                         3                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q29) MUTATED        3      5      2      3
  AMP PEAK  4(3Q29) WILD-TYPE      5     10      3     11
D4V10, multiclass
        clus
vv       AMP PEAK  4(3Q29) MUTATED AMP PEAK  4(3Q29) WILD-TYPE
  CLUS_1                         3                           5
  CLUS_2                         5                          10
  CLUS_3                         2                           3
  CLUS_4                         3                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(5P13.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5P13.1) MUTATED        5      0      3
  AMP PEAK  5(5P13.1) WILD-TYPE     15      7     18
D5V1, multiclass
        clus
vv       AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE
  CLUS_1                           5                            15
  CLUS_2                           0                             7
  CLUS_3                           3                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5P13.1) MUTATED        4      1      3      0
  AMP PEAK  5(5P13.1) WILD-TYPE      5     12     16      7
D5V2, multiclass
        clus
vv       AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE
  CLUS_1                           4                             5
  CLUS_2                           1                            12
  CLUS_3                           3                            16
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(5P13.1) MUTATED        1      1      1      1      2      0
  AMP PEAK  5(5P13.1) WILD-TYPE      5      4      4      5      4      5
D5V3, multiclass
        clus
vv       AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           1                             4
  CLUS_3                           1                             4
  CLUS_4                           1                             5
  CLUS_5                           2                             4
  CLUS_6                           0                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5P13.1) MUTATED        1      3      2
  AMP PEAK  5(5P13.1) WILD-TYPE      5     12     10
D5V4, multiclass
        clus
vv       AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           3                            12
  CLUS_3                           2                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(5P13.1) MUTATED        0      1      1      1      3      2
  AMP PEAK  5(5P13.1) WILD-TYPE     10     11      8      2      5      4
D5V5, multiclass
        clus
vv       AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE
  CLUS_1                           0                            10
  CLUS_2                           1                            11
  CLUS_3                           1                             8
  CLUS_4                           1                             2
  CLUS_5                           3                             5
  CLUS_6                           2                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5P13.1) MUTATED        4      1      1      2
  AMP PEAK  5(5P13.1) WILD-TYPE     18     10      6      6
D5V6, multiclass
        clus
vv       AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE
  CLUS_1                           4                            18
  CLUS_2                           1                            10
  CLUS_3                           1                             6
  CLUS_4                           2                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5P13.1) MUTATED        3      3      2
  AMP PEAK  5(5P13.1) WILD-TYPE     13     13     13
D5V7, multiclass
        clus
vv       AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE
  CLUS_1                           3                            13
  CLUS_2                           3                            13
  CLUS_3                           2                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(5P13.1) MUTATED        0      3      2      2      1
  AMP PEAK  5(5P13.1) WILD-TYPE      9      9      6     10      5
D5V8, multiclass
        clus
vv       AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE
  CLUS_1                           0                             9
  CLUS_2                           3                             9
  CLUS_3                           2                             6
  CLUS_4                           2                            10
  CLUS_5                           1                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5P13.1) MUTATED        1      1      2      2
  AMP PEAK  5(5P13.1) WILD-TYPE      8      9      7     12
D5V9, multiclass
        clus
vv       AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           1                             9
  CLUS_3                           2                             7
  CLUS_4                           2                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5P13.1) MUTATED        1      4      0      1
  AMP PEAK  5(5P13.1) WILD-TYPE      7     11      5     13
D5V10, multiclass
        clus
vv       AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                           4                            11
  CLUS_3                           0                             5
  CLUS_4                           1                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(7P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P22.3) MUTATED        2      2     12
  AMP PEAK  6(7P22.3) WILD-TYPE     18      5      9
D6V1, multiclass
        clus
vv       AMP PEAK  6(7P22.3) MUTATED AMP PEAK  6(7P22.3) WILD-TYPE
  CLUS_1                           2                            18
  CLUS_2                           2                             5
  CLUS_3                          12                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P22.3) MUTATED        2      5      6      3
  AMP PEAK  6(7P22.3) WILD-TYPE      7      8     13      4
D6V2, multiclass
        clus
vv       AMP PEAK  6(7P22.3) MUTATED AMP PEAK  6(7P22.3) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                           5                             8
  CLUS_3                           6                            13
  CLUS_4                           3                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7P22.3) MUTATED        2      1      2      2      1      0
  AMP PEAK  6(7P22.3) WILD-TYPE      4      4      3      4      5      5
D6V3, multiclass
        clus
vv       AMP PEAK  6(7P22.3) MUTATED AMP PEAK  6(7P22.3) WILD-TYPE
  CLUS_1                           2                             4
  CLUS_2                           1                             4
  CLUS_3                           2                             3
  CLUS_4                           2                             4
  CLUS_5                           1                             5
  CLUS_6                           0                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P22.3) MUTATED        1      3      4
  AMP PEAK  6(7P22.3) WILD-TYPE      5     12      8
D6V4, multiclass
        clus
vv       AMP PEAK  6(7P22.3) MUTATED AMP PEAK  6(7P22.3) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           3                            12
  CLUS_3                           4                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7P22.3) MUTATED        4      6      1      2      3      0
  AMP PEAK  6(7P22.3) WILD-TYPE      6      6      8      1      5      6
D6V5, multiclass
        clus
vv       AMP PEAK  6(7P22.3) MUTATED AMP PEAK  6(7P22.3) WILD-TYPE
  CLUS_1                           4                             6
  CLUS_2                           6                             6
  CLUS_3                           1                             8
  CLUS_4                           2                             1
  CLUS_5                           3                             5
  CLUS_6                           0                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P22.3) MUTATED        7      6      3      0
  AMP PEAK  6(7P22.3) WILD-TYPE     15      5      4      8
D6V6, multiclass
        clus
vv       AMP PEAK  6(7P22.3) MUTATED AMP PEAK  6(7P22.3) WILD-TYPE
  CLUS_1                           7                            15
  CLUS_2                           6                             5
  CLUS_3                           3                             4
  CLUS_4                           0                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P22.3) MUTATED        4      5      6
  AMP PEAK  6(7P22.3) WILD-TYPE     12     11      9
D6V7, multiclass
        clus
vv       AMP PEAK  6(7P22.3) MUTATED AMP PEAK  6(7P22.3) WILD-TYPE
  CLUS_1                           4                            12
  CLUS_2                           5                            11
  CLUS_3                           6                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(7P22.3) MUTATED        2      3      3      5      2
  AMP PEAK  6(7P22.3) WILD-TYPE      7      9      5      7      4
D6V8, multiclass
        clus
vv       AMP PEAK  6(7P22.3) MUTATED AMP PEAK  6(7P22.3) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                           3                             9
  CLUS_3                           3                             5
  CLUS_4                           5                             7
  CLUS_5                           2                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P22.3) MUTATED        3      1      4      5
  AMP PEAK  6(7P22.3) WILD-TYPE      6      9      5      9
D6V9, multiclass
        clus
vv       AMP PEAK  6(7P22.3) MUTATED AMP PEAK  6(7P22.3) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           1                             9
  CLUS_3                           4                             5
  CLUS_4                           5                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P22.3) MUTATED        3      3      2      5
  AMP PEAK  6(7P22.3) WILD-TYPE      5     12      3      9
D6V10, multiclass
        clus
vv       AMP PEAK  6(7P22.3) MUTATED AMP PEAK  6(7P22.3) WILD-TYPE
  CLUS_1                           3                             5
  CLUS_2                           3                            12
  CLUS_3                           2                             3
  CLUS_4                           5                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(7Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q21.3) MUTATED        2      1     12
  AMP PEAK  7(7Q21.3) WILD-TYPE     18      6      9
D7V1, multiclass
        clus
vv       AMP PEAK  7(7Q21.3) MUTATED AMP PEAK  7(7Q21.3) WILD-TYPE
  CLUS_1                           2                            18
  CLUS_2                           1                             6
  CLUS_3                          12                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q21.3) MUTATED        1      4      8      2
  AMP PEAK  7(7Q21.3) WILD-TYPE      8      9     11      5
D7V2, multiclass
        clus
vv       AMP PEAK  7(7Q21.3) MUTATED AMP PEAK  7(7Q21.3) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           4                             9
  CLUS_3                           8                            11
  CLUS_4                           2                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(7Q21.3) MUTATED        2      1      2      1      1      0
  AMP PEAK  7(7Q21.3) WILD-TYPE      4      4      3      5      5      5
D7V3, multiclass
        clus
vv       AMP PEAK  7(7Q21.3) MUTATED AMP PEAK  7(7Q21.3) WILD-TYPE
  CLUS_1                           2                             4
  CLUS_2                           1                             4
  CLUS_3                           2                             3
  CLUS_4                           1                             5
  CLUS_5                           1                             5
  CLUS_6                           0                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q21.3) MUTATED        1      3      3
  AMP PEAK  7(7Q21.3) WILD-TYPE      5     12      9
D7V4, multiclass
        clus
vv       AMP PEAK  7(7Q21.3) MUTATED AMP PEAK  7(7Q21.3) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           3                            12
  CLUS_3                           3                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(7Q21.3) MUTATED        2      5      2      2      4      0
  AMP PEAK  7(7Q21.3) WILD-TYPE      8      7      7      1      4      6
D7V5, multiclass
        clus
vv       AMP PEAK  7(7Q21.3) MUTATED AMP PEAK  7(7Q21.3) WILD-TYPE
  CLUS_1                           2                             8
  CLUS_2                           5                             7
  CLUS_3                           2                             7
  CLUS_4                           2                             1
  CLUS_5                           4                             4
  CLUS_6                           0                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q21.3) MUTATED        6      5      3      1
  AMP PEAK  7(7Q21.3) WILD-TYPE     16      6      4      7
D7V6, multiclass
        clus
vv       AMP PEAK  7(7Q21.3) MUTATED AMP PEAK  7(7Q21.3) WILD-TYPE
  CLUS_1                           6                            16
  CLUS_2                           5                             6
  CLUS_3                           3                             4
  CLUS_4                           1                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q21.3) MUTATED        4      5      6
  AMP PEAK  7(7Q21.3) WILD-TYPE     12     11      9
D7V7, multiclass
        clus
vv       AMP PEAK  7(7Q21.3) MUTATED AMP PEAK  7(7Q21.3) WILD-TYPE
  CLUS_1                           4                            12
  CLUS_2                           5                            11
  CLUS_3                           6                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(7Q21.3) MUTATED        2      3      3      5      2
  AMP PEAK  7(7Q21.3) WILD-TYPE      7      9      5      7      4
D7V8, multiclass
        clus
vv       AMP PEAK  7(7Q21.3) MUTATED AMP PEAK  7(7Q21.3) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                           3                             9
  CLUS_3                           3                             5
  CLUS_4                           5                             7
  CLUS_5                           2                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q21.3) MUTATED        3      0      4      5
  AMP PEAK  7(7Q21.3) WILD-TYPE      6     10      5      9
D7V9, multiclass
        clus
vv       AMP PEAK  7(7Q21.3) MUTATED AMP PEAK  7(7Q21.3) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           0                            10
  CLUS_3                           4                             5
  CLUS_4                           5                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q21.3) MUTATED        3      2      2      5
  AMP PEAK  7(7Q21.3) WILD-TYPE      5     13      3      9
D7V10, multiclass
        clus
vv       AMP PEAK  7(7Q21.3) MUTATED AMP PEAK  7(7Q21.3) WILD-TYPE
  CLUS_1                           3                             5
  CLUS_2                           2                            13
  CLUS_3                           2                             3
  CLUS_4                           5                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(8Q24.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q24.23) MUTATED        5      1      8
  AMP PEAK  8(8Q24.23) WILD-TYPE     15      6     13
D8V1, multiclass
        clus
vv       AMP PEAK  8(8Q24.23) MUTATED AMP PEAK  8(8Q24.23) WILD-TYPE
  CLUS_1                            5                             15
  CLUS_2                            1                              6
  CLUS_3                            8                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q24.23) MUTATED        4      5      4      1
  AMP PEAK  8(8Q24.23) WILD-TYPE      5      8     15      6
D8V2, multiclass
        clus
vv       AMP PEAK  8(8Q24.23) MUTATED AMP PEAK  8(8Q24.23) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            5                              8
  CLUS_3                            4                             15
  CLUS_4                            1                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(8Q24.23) MUTATED        1      2      2      2      2      1
  AMP PEAK  8(8Q24.23) WILD-TYPE      5      3      3      4      4      4
D8V3, multiclass
        clus
vv       AMP PEAK  8(8Q24.23) MUTATED AMP PEAK  8(8Q24.23) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            2                              3
  CLUS_3                            2                              3
  CLUS_4                            2                              4
  CLUS_5                            2                              4
  CLUS_6                            1                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q24.23) MUTATED        1      5      4
  AMP PEAK  8(8Q24.23) WILD-TYPE      5     10      8
D8V4, multiclass
        clus
vv       AMP PEAK  8(8Q24.23) MUTATED AMP PEAK  8(8Q24.23) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            5                             10
  CLUS_3                            4                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(8Q24.23) MUTATED        1      4      1      2      3      3
  AMP PEAK  8(8Q24.23) WILD-TYPE      9      8      8      1      5      3
D8V5, multiclass
        clus
vv       AMP PEAK  8(8Q24.23) MUTATED AMP PEAK  8(8Q24.23) WILD-TYPE
  CLUS_1                            1                              9
  CLUS_2                            4                              8
  CLUS_3                            1                              8
  CLUS_4                            2                              1
  CLUS_5                            3                              5
  CLUS_6                            3                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q24.23) MUTATED        4      4      2      4
  AMP PEAK  8(8Q24.23) WILD-TYPE     18      7      5      4
D8V6, multiclass
        clus
vv       AMP PEAK  8(8Q24.23) MUTATED AMP PEAK  8(8Q24.23) WILD-TYPE
  CLUS_1                            4                             18
  CLUS_2                            4                              7
  CLUS_3                            2                              5
  CLUS_4                            4                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q24.23) MUTATED        3      3      8
  AMP PEAK  8(8Q24.23) WILD-TYPE     13     13      7
D8V7, multiclass
        clus
vv       AMP PEAK  8(8Q24.23) MUTATED AMP PEAK  8(8Q24.23) WILD-TYPE
  CLUS_1                            3                             13
  CLUS_2                            3                             13
  CLUS_3                            8                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(8Q24.23) MUTATED        1      3      1      6      3
  AMP PEAK  8(8Q24.23) WILD-TYPE      8      9      7      6      3
D8V8, multiclass
        clus
vv       AMP PEAK  8(8Q24.23) MUTATED AMP PEAK  8(8Q24.23) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            3                              9
  CLUS_3                            1                              7
  CLUS_4                            6                              6
  CLUS_5                            3                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q24.23) MUTATED        0      4      3      4
  AMP PEAK  8(8Q24.23) WILD-TYPE      9      6      6     10
D8V9, multiclass
        clus
vv       AMP PEAK  8(8Q24.23) MUTATED AMP PEAK  8(8Q24.23) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            4                              6
  CLUS_3                            3                              6
  CLUS_4                            4                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q24.23) MUTATED        0      6      1      4
  AMP PEAK  8(8Q24.23) WILD-TYPE      8      9      4     10
D8V10, multiclass
        clus
vv       AMP PEAK  8(8Q24.23) MUTATED AMP PEAK  8(8Q24.23) WILD-TYPE
  CLUS_1                            0                              8
  CLUS_2                            6                              9
  CLUS_3                            1                              4
  CLUS_4                            4                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(12Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(12Q21.1) MUTATED        5      0      9
  AMP PEAK  9(12Q21.1) WILD-TYPE     15      7     12
D9V1, multiclass
        clus
vv       AMP PEAK  9(12Q21.1) MUTATED AMP PEAK  9(12Q21.1) WILD-TYPE
  CLUS_1                            5                             15
  CLUS_2                            0                              7
  CLUS_3                            9                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(12Q21.1) MUTATED        2      2      9      1
  AMP PEAK  9(12Q21.1) WILD-TYPE      7     11     10      6
D9V2, multiclass
        clus
vv       AMP PEAK  9(12Q21.1) MUTATED AMP PEAK  9(12Q21.1) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            2                             11
  CLUS_3                            9                             10
  CLUS_4                            1                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(12Q21.1) MUTATED        3      2      1      2      2      1
  AMP PEAK  9(12Q21.1) WILD-TYPE      3      3      4      4      4      4
D9V3, multiclass
        clus
vv       AMP PEAK  9(12Q21.1) MUTATED AMP PEAK  9(12Q21.1) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            2                              3
  CLUS_3                            1                              4
  CLUS_4                            2                              4
  CLUS_5                            2                              4
  CLUS_6                            1                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(12Q21.1) MUTATED        1      6      4
  AMP PEAK  9(12Q21.1) WILD-TYPE      5      9      8
D9V4, multiclass
        clus
vv       AMP PEAK  9(12Q21.1) MUTATED AMP PEAK  9(12Q21.1) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            6                              9
  CLUS_3                            4                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(12Q21.1) MUTATED        1      2      5      1      4      1
  AMP PEAK  9(12Q21.1) WILD-TYPE      9     10      4      2      4      5
D9V5, multiclass
        clus
vv       AMP PEAK  9(12Q21.1) MUTATED AMP PEAK  9(12Q21.1) WILD-TYPE
  CLUS_1                            1                              9
  CLUS_2                            2                             10
  CLUS_3                            5                              4
  CLUS_4                            1                              2
  CLUS_5                            4                              4
  CLUS_6                            1                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(12Q21.1) MUTATED        6      2      3      3
  AMP PEAK  9(12Q21.1) WILD-TYPE     16      9      4      5
D9V6, multiclass
        clus
vv       AMP PEAK  9(12Q21.1) MUTATED AMP PEAK  9(12Q21.1) WILD-TYPE
  CLUS_1                            6                             16
  CLUS_2                            2                              9
  CLUS_3                            3                              4
  CLUS_4                            3                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(12Q21.1) MUTATED        6      3      5
  AMP PEAK  9(12Q21.1) WILD-TYPE     10     13     10
D9V7, multiclass
        clus
vv       AMP PEAK  9(12Q21.1) MUTATED AMP PEAK  9(12Q21.1) WILD-TYPE
  CLUS_1                            6                             10
  CLUS_2                            3                             13
  CLUS_3                            5                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(12Q21.1) MUTATED        0      3      5      4      2
  AMP PEAK  9(12Q21.1) WILD-TYPE      9      9      3      8      4
D9V8, multiclass
        clus
vv       AMP PEAK  9(12Q21.1) MUTATED AMP PEAK  9(12Q21.1) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            3                              9
  CLUS_3                            5                              3
  CLUS_4                            4                              8
  CLUS_5                            2                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(12Q21.1) MUTATED        4      1      5      2
  AMP PEAK  9(12Q21.1) WILD-TYPE      5      9      4     12
D9V9, multiclass
        clus
vv       AMP PEAK  9(12Q21.1) MUTATED AMP PEAK  9(12Q21.1) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            1                              9
  CLUS_3                            5                              4
  CLUS_4                            2                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(12Q21.1) MUTATED        4      3      3      2
  AMP PEAK  9(12Q21.1) WILD-TYPE      4     12      2     12
D9V10, multiclass
        clus
vv       AMP PEAK  9(12Q21.1) MUTATED AMP PEAK  9(12Q21.1) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                            3                             12
  CLUS_3                            3                              2
  CLUS_4                            2                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 11(16P12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(16P12.2) MUTATED        4      0      6
  AMP PEAK 11(16P12.2) WILD-TYPE     16      7     15
D10V1, multiclass
        clus
vv       AMP PEAK 11(16P12.2) MUTATED AMP PEAK 11(16P12.2) WILD-TYPE
  CLUS_1                            4                             16
  CLUS_2                            0                              7
  CLUS_3                            6                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(16P12.2) MUTATED        2      0      6      2
  AMP PEAK 11(16P12.2) WILD-TYPE      7     13     13      5
D10V2, multiclass
        clus
vv       AMP PEAK 11(16P12.2) MUTATED AMP PEAK 11(16P12.2) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            0                             13
  CLUS_3                            6                             13
  CLUS_4                            2                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(16P12.2) MUTATED        3      0      1      0      2      1
  AMP PEAK 11(16P12.2) WILD-TYPE      3      5      4      6      4      4
D10V3, multiclass
        clus
vv       AMP PEAK 11(16P12.2) MUTATED AMP PEAK 11(16P12.2) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            0                              5
  CLUS_3                            1                              4
  CLUS_4                            0                              6
  CLUS_5                            2                              4
  CLUS_6                            1                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(16P12.2) MUTATED        1      4      2
  AMP PEAK 11(16P12.2) WILD-TYPE      5     11     10
D10V4, multiclass
        clus
vv       AMP PEAK 11(16P12.2) MUTATED AMP PEAK 11(16P12.2) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            4                             11
  CLUS_3                            2                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(16P12.2) MUTATED        1      0      2      2      4      1
  AMP PEAK 11(16P12.2) WILD-TYPE      9     12      7      1      4      5
D10V5, multiclass
        clus
vv       AMP PEAK 11(16P12.2) MUTATED AMP PEAK 11(16P12.2) WILD-TYPE
  CLUS_1                            1                              9
  CLUS_2                            0                             12
  CLUS_3                            2                              7
  CLUS_4                            2                              1
  CLUS_5                            4                              4
  CLUS_6                            1                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(16P12.2) MUTATED        6      0      3      1
  AMP PEAK 11(16P12.2) WILD-TYPE     16     11      4      7
D10V6, multiclass
        clus
vv       AMP PEAK 11(16P12.2) MUTATED AMP PEAK 11(16P12.2) WILD-TYPE
  CLUS_1                            6                             16
  CLUS_2                            0                             11
  CLUS_3                            3                              4
  CLUS_4                            1                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(16P12.2) MUTATED        4      5      1
  AMP PEAK 11(16P12.2) WILD-TYPE     12     11     14
D10V7, multiclass
        clus
vv       AMP PEAK 11(16P12.2) MUTATED AMP PEAK 11(16P12.2) WILD-TYPE
  CLUS_1                            4                             12
  CLUS_2                            5                             11
  CLUS_3                            1                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(16P12.2) MUTATED        1      3      4      0      2
  AMP PEAK 11(16P12.2) WILD-TYPE      8      9      4     12      4
D10V8, multiclass
        clus
vv       AMP PEAK 11(16P12.2) MUTATED AMP PEAK 11(16P12.2) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            3                              9
  CLUS_3                            4                              4
  CLUS_4                            0                             12
  CLUS_5                            2                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(16P12.2) MUTATED        3      0      1      4
  AMP PEAK 11(16P12.2) WILD-TYPE      6     10      8     10
D10V9, multiclass
        clus
vv       AMP PEAK 11(16P12.2) MUTATED AMP PEAK 11(16P12.2) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            0                             10
  CLUS_3                            1                              8
  CLUS_4                            4                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(16P12.2) MUTATED        3      1      0      4
  AMP PEAK 11(16P12.2) WILD-TYPE      5     14      5     10
D10V10, multiclass
        clus
vv       AMP PEAK 11(16P12.2) MUTATED AMP PEAK 11(16P12.2) WILD-TYPE
  CLUS_1                            3                              5
  CLUS_2                            1                             14
  CLUS_3                            0                              5
  CLUS_4                            4                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 12(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(18Q21.2) MUTATED        2      1     13
  AMP PEAK 12(18Q21.2) WILD-TYPE     18      6      8
D11V1, multiclass
        clus
vv       AMP PEAK 12(18Q21.2) MUTATED AMP PEAK 12(18Q21.2) WILD-TYPE
  CLUS_1                            2                             18
  CLUS_2                            1                              6
  CLUS_3                           13                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(18Q21.2) MUTATED        1      4      8      3
  AMP PEAK 12(18Q21.2) WILD-TYPE      8      9     11      4
D11V2, multiclass
        clus
vv       AMP PEAK 12(18Q21.2) MUTATED AMP PEAK 12(18Q21.2) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            4                              9
  CLUS_3                            8                             11
  CLUS_4                            3                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(18Q21.2) MUTATED        3      1      2      5      0      0
  AMP PEAK 12(18Q21.2) WILD-TYPE      3      4      3      1      6      5
D11V3, multiclass
        clus
vv       AMP PEAK 12(18Q21.2) MUTATED AMP PEAK 12(18Q21.2) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            1                              4
  CLUS_3                            2                              3
  CLUS_4                            5                              1
  CLUS_5                            0                              6
  CLUS_6                            0                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(18Q21.2) MUTATED        1      6      4
  AMP PEAK 12(18Q21.2) WILD-TYPE      5      9      8
D11V4, multiclass
        clus
vv       AMP PEAK 12(18Q21.2) MUTATED AMP PEAK 12(18Q21.2) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            6                              9
  CLUS_3                            4                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(18Q21.2) MUTATED        3      5      5      0      2      1
  AMP PEAK 12(18Q21.2) WILD-TYPE      7      7      4      3      6      5
D11V5, multiclass
        clus
vv       AMP PEAK 12(18Q21.2) MUTATED AMP PEAK 12(18Q21.2) WILD-TYPE
  CLUS_1                            3                              7
  CLUS_2                            5                              7
  CLUS_3                            5                              4
  CLUS_4                            0                              3
  CLUS_5                            2                              6
  CLUS_6                            1                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(18Q21.2) MUTATED        5      5      2      4
  AMP PEAK 12(18Q21.2) WILD-TYPE     17      6      5      4
D11V6, multiclass
        clus
vv       AMP PEAK 12(18Q21.2) MUTATED AMP PEAK 12(18Q21.2) WILD-TYPE
  CLUS_1                            5                             17
  CLUS_2                            5                              6
  CLUS_3                            2                              5
  CLUS_4                            4                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(18Q21.2) MUTATED        7      2      7
  AMP PEAK 12(18Q21.2) WILD-TYPE      9     14      8
D11V7, multiclass
        clus
vv       AMP PEAK 12(18Q21.2) MUTATED AMP PEAK 12(18Q21.2) WILD-TYPE
  CLUS_1                            7                              9
  CLUS_2                            2                             14
  CLUS_3                            7                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(18Q21.2) MUTATED        1      2      4      8      1
  AMP PEAK 12(18Q21.2) WILD-TYPE      8     10      4      4      5
D11V8, multiclass
        clus
vv       AMP PEAK 12(18Q21.2) MUTATED AMP PEAK 12(18Q21.2) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            2                             10
  CLUS_3                            4                              4
  CLUS_4                            8                              4
  CLUS_5                            1                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(18Q21.2) MUTATED        4      2      5      3
  AMP PEAK 12(18Q21.2) WILD-TYPE      5      8      4     11
D11V9, multiclass
        clus
vv       AMP PEAK 12(18Q21.2) MUTATED AMP PEAK 12(18Q21.2) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            2                              8
  CLUS_3                            5                              4
  CLUS_4                            3                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(18Q21.2) MUTATED        4      3      4      3
  AMP PEAK 12(18Q21.2) WILD-TYPE      4     12      1     11
D11V10, multiclass
        clus
vv       AMP PEAK 12(18Q21.2) MUTATED AMP PEAK 12(18Q21.2) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                            3                             12
  CLUS_3                            4                              1
  CLUS_4                            3                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 13(19Q13.43) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(19Q13.43) MUTATED        2      0      8
  AMP PEAK 13(19Q13.43) WILD-TYPE     18      7     13
D12V1, multiclass
        clus
vv       AMP PEAK 13(19Q13.43) MUTATED AMP PEAK 13(19Q13.43) WILD-TYPE
  CLUS_1                             2                              18
  CLUS_2                             0                               7
  CLUS_3                             8                              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(19Q13.43) MUTATED        2      3      5      0
  AMP PEAK 13(19Q13.43) WILD-TYPE      7     10     14      7
D12V2, multiclass
        clus
vv       AMP PEAK 13(19Q13.43) MUTATED AMP PEAK 13(19Q13.43) WILD-TYPE
  CLUS_1                             2                               7
  CLUS_2                             3                              10
  CLUS_3                             5                              14
  CLUS_4                             0                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(19Q13.43) MUTATED        1      2      1      2      1      0
  AMP PEAK 13(19Q13.43) WILD-TYPE      5      3      4      4      5      5
D12V3, multiclass
        clus
vv       AMP PEAK 13(19Q13.43) MUTATED AMP PEAK 13(19Q13.43) WILD-TYPE
  CLUS_1                             1                               5
  CLUS_2                             2                               3
  CLUS_3                             1                               4
  CLUS_4                             2                               4
  CLUS_5                             1                               5
  CLUS_6                             0                               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(19Q13.43) MUTATED        1      3      3
  AMP PEAK 13(19Q13.43) WILD-TYPE      5     12      9
D12V4, multiclass
        clus
vv       AMP PEAK 13(19Q13.43) MUTATED AMP PEAK 13(19Q13.43) WILD-TYPE
  CLUS_1                             1                               5
  CLUS_2                             3                              12
  CLUS_3                             3                               9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(19Q13.43) MUTATED        0      3      4      0      3      0
  AMP PEAK 13(19Q13.43) WILD-TYPE     10      9      5      3      5      6
D12V5, multiclass
        clus
vv       AMP PEAK 13(19Q13.43) MUTATED AMP PEAK 13(19Q13.43) WILD-TYPE
  CLUS_1                             0                              10
  CLUS_2                             3                               9
  CLUS_3                             4                               5
  CLUS_4                             0                               3
  CLUS_5                             3                               5
  CLUS_6                             0                               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(19Q13.43) MUTATED        4      3      1      2
  AMP PEAK 13(19Q13.43) WILD-TYPE     18      8      6      6
D12V6, multiclass
        clus
vv       AMP PEAK 13(19Q13.43) MUTATED AMP PEAK 13(19Q13.43) WILD-TYPE
  CLUS_1                             4                              18
  CLUS_2                             3                               8
  CLUS_3                             1                               6
  CLUS_4                             2                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(19Q13.43) MUTATED        2      3      5
  AMP PEAK 13(19Q13.43) WILD-TYPE     14     13     10
D12V7, multiclass
        clus
vv       AMP PEAK 13(19Q13.43) MUTATED AMP PEAK 13(19Q13.43) WILD-TYPE
  CLUS_1                             2                              14
  CLUS_2                             3                              13
  CLUS_3                             5                              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(19Q13.43) MUTATED        0      4      1      4      1
  AMP PEAK 13(19Q13.43) WILD-TYPE      9      8      7      8      5
D12V8, multiclass
        clus
vv       AMP PEAK 13(19Q13.43) MUTATED AMP PEAK 13(19Q13.43) WILD-TYPE
  CLUS_1                             0                               9
  CLUS_2                             4                               8
  CLUS_3                             1                               7
  CLUS_4                             4                               8
  CLUS_5                             1                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(19Q13.43) MUTATED        1      1      4      2
  AMP PEAK 13(19Q13.43) WILD-TYPE      8      9      5     12
D12V9, multiclass
        clus
vv       AMP PEAK 13(19Q13.43) MUTATED AMP PEAK 13(19Q13.43) WILD-TYPE
  CLUS_1                             1                               8
  CLUS_2                             1                               9
  CLUS_3                             4                               5
  CLUS_4                             2                              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(19Q13.43) MUTATED        1      4      3      0
  AMP PEAK 13(19Q13.43) WILD-TYPE      7     11      2     14
D12V10, multiclass
        clus
vv       AMP PEAK 13(19Q13.43) MUTATED AMP PEAK 13(19Q13.43) WILD-TYPE
  CLUS_1                             1                               7
  CLUS_2                             4                              11
  CLUS_3                             3                               2
  CLUS_4                             0                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 14(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(XQ28) MUTATED        2      2      4
  AMP PEAK 14(XQ28) WILD-TYPE     18      5     17
D13V1, multiclass
        clus
vv       AMP PEAK 14(XQ28) MUTATED AMP PEAK 14(XQ28) WILD-TYPE
  CLUS_1                         2                          18
  CLUS_2                         2                           5
  CLUS_3                         4                          17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(XQ28) MUTATED        2      0      4      2
  AMP PEAK 14(XQ28) WILD-TYPE      7     13     15      5
D13V2, multiclass
        clus
vv       AMP PEAK 14(XQ28) MUTATED AMP PEAK 14(XQ28) WILD-TYPE
  CLUS_1                         2                           7
  CLUS_2                         0                          13
  CLUS_3                         4                          15
  CLUS_4                         2                           5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(XQ28) MUTATED        2      1      0      1      1      1
  AMP PEAK 14(XQ28) WILD-TYPE      4      4      5      5      5      4
D13V3, multiclass
        clus
vv       AMP PEAK 14(XQ28) MUTATED AMP PEAK 14(XQ28) WILD-TYPE
  CLUS_1                         2                           4
  CLUS_2                         1                           4
  CLUS_3                         0                           5
  CLUS_4                         1                           5
  CLUS_5                         1                           5
  CLUS_6                         1                           4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(XQ28) MUTATED        0      4      2
  AMP PEAK 14(XQ28) WILD-TYPE      6     11     10
D13V4, multiclass
        clus
vv       AMP PEAK 14(XQ28) MUTATED AMP PEAK 14(XQ28) WILD-TYPE
  CLUS_1                         0                           6
  CLUS_2                         4                          11
  CLUS_3                         2                          10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(XQ28) MUTATED        2      1      1      0      4      0
  AMP PEAK 14(XQ28) WILD-TYPE      8     11      8      3      4      6
D13V5, multiclass
        clus
vv       AMP PEAK 14(XQ28) MUTATED AMP PEAK 14(XQ28) WILD-TYPE
  CLUS_1                         2                           8
  CLUS_2                         1                          11
  CLUS_3                         1                           8
  CLUS_4                         0                           3
  CLUS_5                         4                           4
  CLUS_6                         0                           6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(XQ28) MUTATED        6      1      1      0
  AMP PEAK 14(XQ28) WILD-TYPE     16     10      6      8
D13V6, multiclass
        clus
vv       AMP PEAK 14(XQ28) MUTATED AMP PEAK 14(XQ28) WILD-TYPE
  CLUS_1                         6                          16
  CLUS_2                         1                          10
  CLUS_3                         1                           6
  CLUS_4                         0                           8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(XQ28) MUTATED        4      4      0
  AMP PEAK 14(XQ28) WILD-TYPE     12     12     15
D13V7, multiclass
        clus
vv       AMP PEAK 14(XQ28) MUTATED AMP PEAK 14(XQ28) WILD-TYPE
  CLUS_1                         4                          12
  CLUS_2                         4                          12
  CLUS_3                         0                          15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(XQ28) MUTATED        1      1      3      0      3
  AMP PEAK 14(XQ28) WILD-TYPE      8     11      5     12      3
D13V8, multiclass
        clus
vv       AMP PEAK 14(XQ28) MUTATED AMP PEAK 14(XQ28) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         1                          11
  CLUS_3                         3                           5
  CLUS_4                         0                          12
  CLUS_5                         3                           3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(XQ28) MUTATED        3      1      0      4
  AMP PEAK 14(XQ28) WILD-TYPE      6      9      9     10
D13V9, multiclass
        clus
vv       AMP PEAK 14(XQ28) MUTATED AMP PEAK 14(XQ28) WILD-TYPE
  CLUS_1                         3                           6
  CLUS_2                         1                           9
  CLUS_3                         0                           9
  CLUS_4                         4                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(XQ28) MUTATED        3      2      0      3
  AMP PEAK 14(XQ28) WILD-TYPE      5     13      5     11
D13V10, multiclass
        clus
vv       AMP PEAK 14(XQ28) MUTATED AMP PEAK 14(XQ28) WILD-TYPE
  CLUS_1                         3                           5
  CLUS_2                         2                          13
  CLUS_3                         0                           5
  CLUS_4                         3                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = DEL PEAK  1(1P36.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED        4      1      6
  DEL PEAK  1(1P36.32) WILD-TYPE     16      6     15
D14V1, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            4                             16
  CLUS_2                            1                              6
  CLUS_3                            6                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED        2      4      5      0
  DEL PEAK  1(1P36.32) WILD-TYPE      7      9     14      7
D14V2, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            4                              9
  CLUS_3                            5                             14
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.32) MUTATED        1      1      2      0      2      1
  DEL PEAK  1(1P36.32) WILD-TYPE      5      4      3      6      4      4
D14V3, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            1                              4
  CLUS_3                            2                              3
  CLUS_4                            0                              6
  CLUS_5                            2                              4
  CLUS_6                            1                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED        1      2      4
  DEL PEAK  1(1P36.32) WILD-TYPE      5     13      8
D14V4, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            2                             13
  CLUS_3                            4                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.32) MUTATED        0      3      2      2      3      1
  DEL PEAK  1(1P36.32) WILD-TYPE     10      9      7      1      5      5
D14V5, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            0                             10
  CLUS_2                            3                              9
  CLUS_3                            2                              7
  CLUS_4                            2                              1
  CLUS_5                            3                              5
  CLUS_6                            1                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED        6      3      2      0
  DEL PEAK  1(1P36.32) WILD-TYPE     16      8      5      8
D14V6, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            6                             16
  CLUS_2                            3                              8
  CLUS_3                            2                              5
  CLUS_4                            0                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED        3      4      4
  DEL PEAK  1(1P36.32) WILD-TYPE     13     12     11
D14V7, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            3                             13
  CLUS_2                            4                             12
  CLUS_3                            4                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.32) MUTATED        1      2      3      3      2
  DEL PEAK  1(1P36.32) WILD-TYPE      8     10      5      9      4
D14V8, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            2                             10
  CLUS_3                            3                              5
  CLUS_4                            3                              9
  CLUS_5                            2                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED        2      1      4      3
  DEL PEAK  1(1P36.32) WILD-TYPE      7      9      5     11
D14V9, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            1                              9
  CLUS_3                            4                              5
  CLUS_4                            3                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED        2      4      1      3
  DEL PEAK  1(1P36.32) WILD-TYPE      6     11      4     11
D14V10, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            4                             11
  CLUS_3                            1                              4
  CLUS_4                            3                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = DEL PEAK  2(1P13.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED        3      2      7
  DEL PEAK  2(1P13.1) WILD-TYPE     17      5     14
D15V1, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           3                            17
  CLUS_2                           2                             5
  CLUS_3                           7                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.1) MUTATED        3      2      6      1
  DEL PEAK  2(1P13.1) WILD-TYPE      6     11     13      6
D15V2, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           2                            11
  CLUS_3                           6                            13
  CLUS_4                           1                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.1) MUTATED        1      2      1      1      1      1
  DEL PEAK  2(1P13.1) WILD-TYPE      5      3      4      5      5      4
D15V3, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           2                             3
  CLUS_3                           1                             4
  CLUS_4                           1                             5
  CLUS_5                           1                             5
  CLUS_6                           1                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED        0      3      4
  DEL PEAK  2(1P13.1) WILD-TYPE      6     12      8
D15V4, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           0                             6
  CLUS_2                           3                            12
  CLUS_3                           4                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.1) MUTATED        1      3      4      1      2      1
  DEL PEAK  2(1P13.1) WILD-TYPE      9      9      5      2      6      5
D15V5, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           1                             9
  CLUS_2                           3                             9
  CLUS_3                           4                             5
  CLUS_4                           1                             2
  CLUS_5                           2                             6
  CLUS_6                           1                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.1) MUTATED        5      3      1      3
  DEL PEAK  2(1P13.1) WILD-TYPE     17      8      6      5
D15V6, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           5                            17
  CLUS_2                           3                             8
  CLUS_3                           1                             6
  CLUS_4                           3                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED        2      5      5
  DEL PEAK  2(1P13.1) WILD-TYPE     14     11     10
D15V7, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           2                            14
  CLUS_2                           5                            11
  CLUS_3                           5                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.1) MUTATED        1      4      2      4      1
  DEL PEAK  2(1P13.1) WILD-TYPE      8      8      6      8      5
D15V8, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           4                             8
  CLUS_3                           2                             6
  CLUS_4                           4                             8
  CLUS_5                           1                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.1) MUTATED        2      2      3      3
  DEL PEAK  2(1P13.1) WILD-TYPE      7      8      6     11
D15V9, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                           2                             8
  CLUS_3                           3                             6
  CLUS_4                           3                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.1) MUTATED        2      3      3      2
  DEL PEAK  2(1P13.1) WILD-TYPE      6     12      2     12
D15V10, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           3                            12
  CLUS_3                           3                             2
  CLUS_4                           2                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK  3(1Q43) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        2      1      7
  DEL PEAK  3(1Q43) WILD-TYPE     18      6     14
D16V1, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         2                          18
  CLUS_2                         1                           6
  CLUS_3                         7                          14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED        1      3      5      1
  DEL PEAK  3(1Q43) WILD-TYPE      8     10     14      6
D16V2, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         3                          10
  CLUS_3                         5                          14
  CLUS_4                         1                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q43) MUTATED        1      2      3      1      0      1
  DEL PEAK  3(1Q43) WILD-TYPE      5      3      2      5      6      4
D16V3, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         1                           5
  CLUS_2                         2                           3
  CLUS_3                         3                           2
  CLUS_4                         1                           5
  CLUS_5                         0                           6
  CLUS_6                         1                           4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        0      2      6
  DEL PEAK  3(1Q43) WILD-TYPE      6     13      6
D16V4, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         0                           6
  CLUS_2                         2                          13
  CLUS_3                         6                           6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q43) MUTATED        1      4      3      0      2      0
  DEL PEAK  3(1Q43) WILD-TYPE      9      8      6      3      6      6
D16V5, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         1                           9
  CLUS_2                         4                           8
  CLUS_3                         3                           6
  CLUS_4                         0                           3
  CLUS_5                         2                           6
  CLUS_6                         0                           6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED        5      4      0      1
  DEL PEAK  3(1Q43) WILD-TYPE     17      7      7      7
D16V6, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         5                          17
  CLUS_2                         4                           7
  CLUS_3                         0                           7
  CLUS_4                         1                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        4      3      3
  DEL PEAK  3(1Q43) WILD-TYPE     12     13     12
D16V7, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         4                          12
  CLUS_2                         3                          13
  CLUS_3                         3                          12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q43) MUTATED        1      3      2      2      2
  DEL PEAK  3(1Q43) WILD-TYPE      8      9      6     10      4
D16V8, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         3                           9
  CLUS_3                         2                           6
  CLUS_4                         2                          10
  CLUS_5                         2                           4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED        2      2      1      3
  DEL PEAK  3(1Q43) WILD-TYPE      7      8      8     11
D16V9, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         2                           7
  CLUS_2                         2                           8
  CLUS_3                         1                           8
  CLUS_4                         3                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED        2      2      1      3
  DEL PEAK  3(1Q43) WILD-TYPE      6     13      4     11
D16V10, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         2                           6
  CLUS_2                         2                          13
  CLUS_3                         1                           4
  CLUS_4                         3                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK  4(2Q23.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q23.1) MUTATED        2      0      6
  DEL PEAK  4(2Q23.1) WILD-TYPE     18      7     15
D17V1, multiclass
        clus
vv       DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE
  CLUS_1                           2                            18
  CLUS_2                           0                             7
  CLUS_3                           6                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q23.1) MUTATED        1      3      3      1
  DEL PEAK  4(2Q23.1) WILD-TYPE      8     10     16      6
D17V2, multiclass
        clus
vv       DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           3                            10
  CLUS_3                           3                            16
  CLUS_4                           1                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q23.1) MUTATED        1      1      2      0      0      1
  DEL PEAK  4(2Q23.1) WILD-TYPE      5      4      3      6      6      4
D17V3, multiclass
        clus
vv       DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           1                             4
  CLUS_3                           2                             3
  CLUS_4                           0                             6
  CLUS_5                           0                             6
  CLUS_6                           1                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q23.1) MUTATED        0      1      4
  DEL PEAK  4(2Q23.1) WILD-TYPE      6     14      8
D17V4, multiclass
        clus
vv       DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE
  CLUS_1                           0                             6
  CLUS_2                           1                            14
  CLUS_3                           4                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q23.1) MUTATED        1      3      2      1      1      0
  DEL PEAK  4(2Q23.1) WILD-TYPE      9      9      7      2      7      6
D17V5, multiclass
        clus
vv       DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE
  CLUS_1                           1                             9
  CLUS_2                           3                             9
  CLUS_3                           2                             7
  CLUS_4                           1                             2
  CLUS_5                           1                             7
  CLUS_6                           0                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q23.1) MUTATED        4      3      1      0
  DEL PEAK  4(2Q23.1) WILD-TYPE     18      8      6      8
D17V6, multiclass
        clus
vv       DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE
  CLUS_1                           4                            18
  CLUS_2                           3                             8
  CLUS_3                           1                             6
  CLUS_4                           0                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q23.1) MUTATED        1      3      3
  DEL PEAK  4(2Q23.1) WILD-TYPE     15     13     12
D17V7, multiclass
        clus
vv       DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE
  CLUS_1                           1                            15
  CLUS_2                           3                            13
  CLUS_3                           3                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q23.1) MUTATED        0      2      1      2      2
  DEL PEAK  4(2Q23.1) WILD-TYPE      9     10      7     10      4
D17V8, multiclass
        clus
vv       DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE
  CLUS_1                           0                             9
  CLUS_2                           2                            10
  CLUS_3                           1                             7
  CLUS_4                           2                            10
  CLUS_5                           2                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q23.1) MUTATED        1      0      2      3
  DEL PEAK  4(2Q23.1) WILD-TYPE      8     10      7     11
D17V9, multiclass
        clus
vv       DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           0                            10
  CLUS_3                           2                             7
  CLUS_4                           3                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q23.1) MUTATED        1      2      1      2
  DEL PEAK  4(2Q23.1) WILD-TYPE      7     13      4     12
D17V10, multiclass
        clus
vv       DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                           2                            13
  CLUS_3                           1                             4
  CLUS_4                           2                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK  5(3P21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED        4      0      4
  DEL PEAK  5(3P21.31) WILD-TYPE     16      7     17
D18V1, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            4                             16
  CLUS_2                            0                              7
  CLUS_3                            4                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED        2      1      5      0
  DEL PEAK  5(3P21.31) WILD-TYPE      7     12     14      7
D18V2, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            1                             12
  CLUS_3                            5                             14
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P21.31) MUTATED        1      2      0      1      1      1
  DEL PEAK  5(3P21.31) WILD-TYPE      5      3      5      5      5      4
D18V3, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            2                              3
  CLUS_3                            0                              5
  CLUS_4                            1                              5
  CLUS_5                            1                              5
  CLUS_6                            1                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED        2      2      2
  DEL PEAK  5(3P21.31) WILD-TYPE      4     13     10
D18V4, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            2                             13
  CLUS_3                            2                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P21.31) MUTATED        2      1      2      1      1      1
  DEL PEAK  5(3P21.31) WILD-TYPE      8     11      7      2      7      5
D18V5, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            2                              8
  CLUS_2                            1                             11
  CLUS_3                            2                              7
  CLUS_4                            1                              2
  CLUS_5                            1                              7
  CLUS_6                            1                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED        2      1      3      2
  DEL PEAK  5(3P21.31) WILD-TYPE     20     10      4      6
D18V6, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            2                             20
  CLUS_2                            1                             10
  CLUS_3                            3                              4
  CLUS_4                            2                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED        4      0      4
  DEL PEAK  5(3P21.31) WILD-TYPE     12     16     11
D18V7, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            4                             12
  CLUS_2                            0                             16
  CLUS_3                            4                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P21.31) MUTATED        1      2      2      3      0
  DEL PEAK  5(3P21.31) WILD-TYPE      8     10      6      9      6
D18V8, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            2                             10
  CLUS_3                            2                              6
  CLUS_4                            3                              9
  CLUS_5                            0                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED        3      1      3      0
  DEL PEAK  5(3P21.31) WILD-TYPE      6      9      6     14
D18V9, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            1                              9
  CLUS_3                            3                              6
  CLUS_4                            0                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED        2      1      3      1
  DEL PEAK  5(3P21.31) WILD-TYPE      6     14      2     13
D18V10, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            1                             14
  CLUS_3                            3                              2
  CLUS_4                            1                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK  6(4Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q35.1) MUTATED        1      2      7
  DEL PEAK  6(4Q35.1) WILD-TYPE     19      5     14
D19V1, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                           1                            19
  CLUS_2                           2                             5
  CLUS_3                           7                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q35.1) MUTATED        3      1      5      1
  DEL PEAK  6(4Q35.1) WILD-TYPE      6     12     14      6
D19V2, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           1                            12
  CLUS_3                           5                            14
  CLUS_4                           1                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q35.1) MUTATED        1      3      1      2      0      0
  DEL PEAK  6(4Q35.1) WILD-TYPE      5      2      4      4      6      5
D19V3, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           3                             2
  CLUS_3                           1                             4
  CLUS_4                           2                             4
  CLUS_5                           0                             6
  CLUS_6                           0                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q35.1) MUTATED        0      3      4
  DEL PEAK  6(4Q35.1) WILD-TYPE      6     12      8
D19V4, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                           0                             6
  CLUS_2                           3                            12
  CLUS_3                           4                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q35.1) MUTATED        1      2      3      1      2      1
  DEL PEAK  6(4Q35.1) WILD-TYPE      9     10      6      2      6      5
D19V5, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                           1                             9
  CLUS_2                           2                            10
  CLUS_3                           3                             6
  CLUS_4                           1                             2
  CLUS_5                           2                             6
  CLUS_6                           1                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q35.1) MUTATED        4      2      1      3
  DEL PEAK  6(4Q35.1) WILD-TYPE     18      9      6      5
D19V6, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                           4                            18
  CLUS_2                           2                             9
  CLUS_3                           1                             6
  CLUS_4                           3                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q35.1) MUTATED        2      4      4
  DEL PEAK  6(4Q35.1) WILD-TYPE     14     12     11
D19V7, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                           2                            14
  CLUS_2                           4                            12
  CLUS_3                           4                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q35.1) MUTATED        1      2      0      4      3
  DEL PEAK  6(4Q35.1) WILD-TYPE      8     10      8      8      3
D19V8, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           2                            10
  CLUS_3                           0                             8
  CLUS_4                           4                             8
  CLUS_5                           3                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q35.1) MUTATED        0      3      2      4
  DEL PEAK  6(4Q35.1) WILD-TYPE      9      7      7     10
D19V9, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                           0                             9
  CLUS_2                           3                             7
  CLUS_3                           2                             7
  CLUS_4                           4                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q35.1) MUTATED        0      3      2      4
  DEL PEAK  6(4Q35.1) WILD-TYPE      8     12      3     10
D19V10, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                           0                             8
  CLUS_2                           3                            12
  CLUS_3                           2                             3
  CLUS_4                           4                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK  7(5Q33.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q33.3) MUTATED        2      1      1
  DEL PEAK  7(5Q33.3) WILD-TYPE     18      6     20
D20V1, multiclass
        clus
vv       DEL PEAK  7(5Q33.3) MUTATED DEL PEAK  7(5Q33.3) WILD-TYPE
  CLUS_1                           2                            18
  CLUS_2                           1                             6
  CLUS_3                           1                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q33.3) MUTATED        1      0      3      0
  DEL PEAK  7(5Q33.3) WILD-TYPE      8     13     16      7
D20V2, multiclass
        clus
vv       DEL PEAK  7(5Q33.3) MUTATED DEL PEAK  7(5Q33.3) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           0                            13
  CLUS_3                           3                            16
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5Q33.3) MUTATED        1      0      0      0      0      1
  DEL PEAK  7(5Q33.3) WILD-TYPE      5      5      5      6      6      4
D20V3, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  7(5Q33.3) MUTATED"
clus
  DEL PEAK  7(5Q33.3) MUTATED DEL PEAK  7(5Q33.3) WILD-TYPE 
                            2                            31 
                   TCGA-FA-8693                    TCGA-FA-A4BB 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-FA-A6HN                    TCGA-FA-A6HO 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-FA-A7DS                    TCGA-FA-A7Q1 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-FA-A82F                    TCGA-FA-A86F 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-FF-8041                    TCGA-FF-8042 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-FF-8043                    TCGA-FF-8046 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-FF-8047                    TCGA-FF-8061 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-FF-8062                    TCGA-FF-A7CR 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-FF-A7CW                    TCGA-FF-A7CX 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-FM-8000                    TCGA-G8-6325 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-G8-6326                    TCGA-G8-6906 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-G8-6914                    TCGA-GS-A9TT 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-GS-A9TV                    TCGA-GS-A9TW 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-GS-A9TX                    TCGA-GS-A9TZ 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-GS-A9U4                    TCGA-RQ-A68N 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-VB-A8QN 
"DEL PEAK  7(5Q33.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q33.3) MUTATED        1      1      0
  DEL PEAK  7(5Q33.3) WILD-TYPE      5     14     12
D20V4, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  7(5Q33.3) MUTATED"
clus
  DEL PEAK  7(5Q33.3) MUTATED DEL PEAK  7(5Q33.3) WILD-TYPE 
                            2                            31 
                   TCGA-FA-8693                    TCGA-FA-A4BB 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-FA-A6HN                    TCGA-FA-A6HO 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-FA-A7DS                    TCGA-FA-A7Q1 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-FA-A82F                    TCGA-FA-A86F 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-FF-8041                    TCGA-FF-8042 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-FF-8043                    TCGA-FF-8046 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-FF-8047                    TCGA-FF-8061 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-FF-8062                    TCGA-FF-A7CR 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-FF-A7CW                    TCGA-FF-A7CX 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-FM-8000                    TCGA-G8-6325 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-G8-6326                    TCGA-G8-6906 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-G8-6914                    TCGA-GS-A9TT 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-GS-A9TV                    TCGA-GS-A9TW 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-GS-A9TX                    TCGA-GS-A9TZ 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-GS-A9U4                    TCGA-RQ-A68N 
"DEL PEAK  7(5Q33.3) WILD-TYPE" "DEL PEAK  7(5Q33.3) WILD-TYPE" 
                   TCGA-VB-A8QN 
"DEL PEAK  7(5Q33.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5Q33.3) MUTATED        2      0      0      0      2      0
  DEL PEAK  7(5Q33.3) WILD-TYPE      8     12      9      3      6      6
D20V5, multiclass
        clus
vv       DEL PEAK  7(5Q33.3) MUTATED DEL PEAK  7(5Q33.3) WILD-TYPE
  CLUS_1                           2                             8
  CLUS_2                           0                            12
  CLUS_3                           0                             9
  CLUS_4                           0                             3
  CLUS_5                           2                             6
  CLUS_6                           0                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q33.3) MUTATED        2      0      2      0
  DEL PEAK  7(5Q33.3) WILD-TYPE     20     11      5      8
D20V6, multiclass
        clus
vv       DEL PEAK  7(5Q33.3) MUTATED DEL PEAK  7(5Q33.3) WILD-TYPE
  CLUS_1                           2                            20
  CLUS_2                           0                            11
  CLUS_3                           2                             5
  CLUS_4                           0                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q33.3) MUTATED        3      1      0
  DEL PEAK  7(5Q33.3) WILD-TYPE     13     15     15
D20V7, multiclass
        clus
vv       DEL PEAK  7(5Q33.3) MUTATED DEL PEAK  7(5Q33.3) WILD-TYPE
  CLUS_1                           3                            13
  CLUS_2                           1                            15
  CLUS_3                           0                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5Q33.3) MUTATED        0      0      3      0      1
  DEL PEAK  7(5Q33.3) WILD-TYPE      9     12      5     12      5
D20V8, multiclass
        clus
vv       DEL PEAK  7(5Q33.3) MUTATED DEL PEAK  7(5Q33.3) WILD-TYPE
  CLUS_1                           0                             9
  CLUS_2                           0                            12
  CLUS_3                           3                             5
  CLUS_4                           0                            12
  CLUS_5                           1                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q33.3) MUTATED        3      0      0      1
  DEL PEAK  7(5Q33.3) WILD-TYPE      6     10      9     13
D20V9, multiclass
        clus
vv       DEL PEAK  7(5Q33.3) MUTATED DEL PEAK  7(5Q33.3) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           0                            10
  CLUS_3                           0                             9
  CLUS_4                           1                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q33.3) MUTATED        2      0      0      2
  DEL PEAK  7(5Q33.3) WILD-TYPE      6     15      5     12
D20V10, multiclass
        clus
vv       DEL PEAK  7(5Q33.3) MUTATED DEL PEAK  7(5Q33.3) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           0                            15
  CLUS_3                           0                             5
  CLUS_4                           2                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK  8(6P21.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6P21.32) MUTATED        2      1      3
  DEL PEAK  8(6P21.32) WILD-TYPE     18      6     18
D21V1, multiclass
        clus
vv       DEL PEAK  8(6P21.32) MUTATED DEL PEAK  8(6P21.32) WILD-TYPE
  CLUS_1                            2                             18
  CLUS_2                            1                              6
  CLUS_3                            3                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6P21.32) MUTATED        0      3      3      0
  DEL PEAK  8(6P21.32) WILD-TYPE      9     10     16      7
D21V2, multiclass
        clus
vv       DEL PEAK  8(6P21.32) MUTATED DEL PEAK  8(6P21.32) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            3                             10
  CLUS_3                            3                             16
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(6P21.32) MUTATED        1      0      0      1      0      2
  DEL PEAK  8(6P21.32) WILD-TYPE      5      5      5      5      6      3
D21V3, multiclass
        clus
vv       DEL PEAK  8(6P21.32) MUTATED DEL PEAK  8(6P21.32) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            0                              5
  CLUS_3                            0                              5
  CLUS_4                            1                              5
  CLUS_5                            0                              6
  CLUS_6                            2                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6P21.32) MUTATED        2      1      1
  DEL PEAK  8(6P21.32) WILD-TYPE      4     14     11
D21V4, multiclass
        clus
vv       DEL PEAK  8(6P21.32) MUTATED DEL PEAK  8(6P21.32) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            1                             14
  CLUS_3                            1                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(6P21.32) MUTATED        0      2      2      0      1      1
  DEL PEAK  8(6P21.32) WILD-TYPE     10     10      7      3      7      5
D21V5, multiclass
        clus
vv       DEL PEAK  8(6P21.32) MUTATED DEL PEAK  8(6P21.32) WILD-TYPE
  CLUS_1                            0                             10
  CLUS_2                            2                             10
  CLUS_3                            2                              7
  CLUS_4                            0                              3
  CLUS_5                            1                              7
  CLUS_6                            1                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6P21.32) MUTATED        2      2      0      2
  DEL PEAK  8(6P21.32) WILD-TYPE     20      9      7      6
D21V6, multiclass
        clus
vv       DEL PEAK  8(6P21.32) MUTATED DEL PEAK  8(6P21.32) WILD-TYPE
  CLUS_1                            2                             20
  CLUS_2                            2                              9
  CLUS_3                            0                              7
  CLUS_4                            2                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6P21.32) MUTATED        1      2      3
  DEL PEAK  8(6P21.32) WILD-TYPE     15     14     12
D21V7, multiclass
        clus
vv       DEL PEAK  8(6P21.32) MUTATED DEL PEAK  8(6P21.32) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            2                             14
  CLUS_3                            3                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(6P21.32) MUTATED        0      3      1      2      0
  DEL PEAK  8(6P21.32) WILD-TYPE      9      9      7     10      6
D21V8, multiclass
        clus
vv       DEL PEAK  8(6P21.32) MUTATED DEL PEAK  8(6P21.32) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            3                              9
  CLUS_3                            1                              7
  CLUS_4                            2                             10
  CLUS_5                            0                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6P21.32) MUTATED        1      3      1      0
  DEL PEAK  8(6P21.32) WILD-TYPE      8      7      8     14
D21V9, multiclass
        clus
vv       DEL PEAK  8(6P21.32) MUTATED DEL PEAK  8(6P21.32) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            3                              7
  CLUS_3                            1                              8
  CLUS_4                            0                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6P21.32) MUTATED        1      3      1      0
  DEL PEAK  8(6P21.32) WILD-TYPE      7     12      4     14
D21V10, multiclass
        clus
vv       DEL PEAK  8(6P21.32) MUTATED DEL PEAK  8(6P21.32) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            3                             12
  CLUS_3                            1                              4
  CLUS_4                            0                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK  9(6Q14.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6Q14.1) MUTATED        9      0      8
  DEL PEAK  9(6Q14.1) WILD-TYPE     11      7     13
D22V1, multiclass
        clus
vv       DEL PEAK  9(6Q14.1) MUTATED DEL PEAK  9(6Q14.1) WILD-TYPE
  CLUS_1                           9                            11
  CLUS_2                           0                             7
  CLUS_3                           8                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q14.1) MUTATED        1      5     10      1
  DEL PEAK  9(6Q14.1) WILD-TYPE      8      8      9      6
D22V2, multiclass
        clus
vv       DEL PEAK  9(6Q14.1) MUTATED DEL PEAK  9(6Q14.1) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           5                             8
  CLUS_3                          10                             9
  CLUS_4                           1                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6Q14.1) MUTATED        2      0      2      3      2      3
  DEL PEAK  9(6Q14.1) WILD-TYPE      4      5      3      3      4      2
D22V3, multiclass
        clus
vv       DEL PEAK  9(6Q14.1) MUTATED DEL PEAK  9(6Q14.1) WILD-TYPE
  CLUS_1                           2                             4
  CLUS_2                           0                             5
  CLUS_3                           2                             3
  CLUS_4                           3                             3
  CLUS_5                           2                             4
  CLUS_6                           3                             2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6Q14.1) MUTATED        2      7      3
  DEL PEAK  9(6Q14.1) WILD-TYPE      4      8      9
D22V4, multiclass
        clus
vv       DEL PEAK  9(6Q14.1) MUTATED DEL PEAK  9(6Q14.1) WILD-TYPE
  CLUS_1                           2                             4
  CLUS_2                           7                             8
  CLUS_3                           3                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6Q14.1) MUTATED        3      4      4      1      2      3
  DEL PEAK  9(6Q14.1) WILD-TYPE      7      8      5      2      6      3
D22V5, multiclass
        clus
vv       DEL PEAK  9(6Q14.1) MUTATED DEL PEAK  9(6Q14.1) WILD-TYPE
  CLUS_1                           3                             7
  CLUS_2                           4                             8
  CLUS_3                           4                             5
  CLUS_4                           1                             2
  CLUS_5                           2                             6
  CLUS_6                           3                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q14.1) MUTATED        8      3      3      3
  DEL PEAK  9(6Q14.1) WILD-TYPE     14      8      4      5
D22V6, multiclass
        clus
vv       DEL PEAK  9(6Q14.1) MUTATED DEL PEAK  9(6Q14.1) WILD-TYPE
  CLUS_1                           8                            14
  CLUS_2                           3                             8
  CLUS_3                           3                             4
  CLUS_4                           3                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6Q14.1) MUTATED        8      3      6
  DEL PEAK  9(6Q14.1) WILD-TYPE      8     13      9
D22V7, multiclass
        clus
vv       DEL PEAK  9(6Q14.1) MUTATED DEL PEAK  9(6Q14.1) WILD-TYPE
  CLUS_1                           8                             8
  CLUS_2                           3                            13
  CLUS_3                           6                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6Q14.1) MUTATED        5      3      4      5      0
  DEL PEAK  9(6Q14.1) WILD-TYPE      4      9      4      7      6
D22V8, multiclass
        clus
vv       DEL PEAK  9(6Q14.1) MUTATED DEL PEAK  9(6Q14.1) WILD-TYPE
  CLUS_1                           5                             4
  CLUS_2                           3                             9
  CLUS_3                           4                             4
  CLUS_4                           5                             7
  CLUS_5                           0                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q14.1) MUTATED        5      4      3      2
  DEL PEAK  9(6Q14.1) WILD-TYPE      4      6      6     12
D22V9, multiclass
        clus
vv       DEL PEAK  9(6Q14.1) MUTATED DEL PEAK  9(6Q14.1) WILD-TYPE
  CLUS_1                           5                             4
  CLUS_2                           4                             6
  CLUS_3                           3                             6
  CLUS_4                           2                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q14.1) MUTATED        4      4      2      4
  DEL PEAK  9(6Q14.1) WILD-TYPE      4     11      3     10
D22V10, multiclass
        clus
vv       DEL PEAK  9(6Q14.1) MUTATED DEL PEAK  9(6Q14.1) WILD-TYPE
  CLUS_1                           4                             4
  CLUS_2                           4                            11
  CLUS_3                           2                             3
  CLUS_4                           4                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK 10(6Q22.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.32) MUTATED        9      0      7
  DEL PEAK 10(6Q22.32) WILD-TYPE     11      7     14
D23V1, multiclass
        clus
vv       DEL PEAK 10(6Q22.32) MUTATED DEL PEAK 10(6Q22.32) WILD-TYPE
  CLUS_1                            9                             11
  CLUS_2                            0                              7
  CLUS_3                            7                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q22.32) MUTATED        1      4     11      0
  DEL PEAK 10(6Q22.32) WILD-TYPE      8      9      8      7
D23V2, multiclass
        clus
vv       DEL PEAK 10(6Q22.32) MUTATED DEL PEAK 10(6Q22.32) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            4                              9
  CLUS_3                           11                              8
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6Q22.32) MUTATED        2      1      1      1      2      3
  DEL PEAK 10(6Q22.32) WILD-TYPE      4      4      4      5      4      2
D23V3, multiclass
        clus
vv       DEL PEAK 10(6Q22.32) MUTATED DEL PEAK 10(6Q22.32) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            1                              4
  CLUS_3                            1                              4
  CLUS_4                            1                              5
  CLUS_5                            2                              4
  CLUS_6                            3                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.32) MUTATED        2      5      3
  DEL PEAK 10(6Q22.32) WILD-TYPE      4     10      9
D23V4, multiclass
        clus
vv       DEL PEAK 10(6Q22.32) MUTATED DEL PEAK 10(6Q22.32) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            5                             10
  CLUS_3                            3                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6Q22.32) MUTATED        2      2      6      1      3      2
  DEL PEAK 10(6Q22.32) WILD-TYPE      8     10      3      2      5      4
D23V5, multiclass
        clus
vv       DEL PEAK 10(6Q22.32) MUTATED DEL PEAK 10(6Q22.32) WILD-TYPE
  CLUS_1                            2                              8
  CLUS_2                            2                             10
  CLUS_3                            6                              3
  CLUS_4                            1                              2
  CLUS_5                            3                              5
  CLUS_6                            2                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q22.32) MUTATED        8      2      3      3
  DEL PEAK 10(6Q22.32) WILD-TYPE     14      9      4      5
D23V6, multiclass
        clus
vv       DEL PEAK 10(6Q22.32) MUTATED DEL PEAK 10(6Q22.32) WILD-TYPE
  CLUS_1                            8                             14
  CLUS_2                            2                              9
  CLUS_3                            3                              4
  CLUS_4                            3                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.32) MUTATED        7      3      6
  DEL PEAK 10(6Q22.32) WILD-TYPE      9     13      9
D23V7, multiclass
        clus
vv       DEL PEAK 10(6Q22.32) MUTATED DEL PEAK 10(6Q22.32) WILD-TYPE
  CLUS_1                            7                              9
  CLUS_2                            3                             13
  CLUS_3                            6                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q22.32) MUTATED        3      4      4      5      0
  DEL PEAK 10(6Q22.32) WILD-TYPE      6      8      4      7      6
D23V8, multiclass
        clus
vv       DEL PEAK 10(6Q22.32) MUTATED DEL PEAK 10(6Q22.32) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            4                              8
  CLUS_3                            4                              4
  CLUS_4                            5                              7
  CLUS_5                            0                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q22.32) MUTATED        4      3      4      2
  DEL PEAK 10(6Q22.32) WILD-TYPE      5      7      5     12
D23V9, multiclass
        clus
vv       DEL PEAK 10(6Q22.32) MUTATED DEL PEAK 10(6Q22.32) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            3                              7
  CLUS_3                            4                              5
  CLUS_4                            2                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q22.32) MUTATED        4      4      3      2
  DEL PEAK 10(6Q22.32) WILD-TYPE      4     11      2     12
D23V10, multiclass
        clus
vv       DEL PEAK 10(6Q22.32) MUTATED DEL PEAK 10(6Q22.32) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                            4                             11
  CLUS_3                            3                              2
  CLUS_4                            2                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK 11(6Q23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q23.3) MUTATED       11      0      5
  DEL PEAK 11(6Q23.3) WILD-TYPE      9      7     16
D24V1, multiclass
        clus
vv       DEL PEAK 11(6Q23.3) MUTATED DEL PEAK 11(6Q23.3) WILD-TYPE
  CLUS_1                          11                             9
  CLUS_2                           0                             7
  CLUS_3                           5                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q23.3) MUTATED        2      3     11      0
  DEL PEAK 11(6Q23.3) WILD-TYPE      7     10      8      7
D24V2, multiclass
        clus
vv       DEL PEAK 11(6Q23.3) MUTATED DEL PEAK 11(6Q23.3) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                           3                            10
  CLUS_3                          11                             8
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q23.3) MUTATED        2      0      0      2      2      4
  DEL PEAK 11(6Q23.3) WILD-TYPE      4      5      5      4      4      1
D24V3, multiclass
        clus
vv       DEL PEAK 11(6Q23.3) MUTATED DEL PEAK 11(6Q23.3) WILD-TYPE
  CLUS_1                           2                             4
  CLUS_2                           0                             5
  CLUS_3                           0                             5
  CLUS_4                           2                             4
  CLUS_5                           2                             4
  CLUS_6                           4                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q23.3) MUTATED        3      6      1
  DEL PEAK 11(6Q23.3) WILD-TYPE      3      9     11
D24V4, multiclass
        clus
vv       DEL PEAK 11(6Q23.3) MUTATED DEL PEAK 11(6Q23.3) WILD-TYPE
  CLUS_1                           3                             3
  CLUS_2                           6                             9
  CLUS_3                           1                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q23.3) MUTATED        3      1      5      1      3      3
  DEL PEAK 11(6Q23.3) WILD-TYPE      7     11      4      2      5      3
D24V5, multiclass
        clus
vv       DEL PEAK 11(6Q23.3) MUTATED DEL PEAK 11(6Q23.3) WILD-TYPE
  CLUS_1                           3                             7
  CLUS_2                           1                            11
  CLUS_3                           5                             4
  CLUS_4                           1                             2
  CLUS_5                           3                             5
  CLUS_6                           3                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q23.3) MUTATED        8      1      4      3
  DEL PEAK 11(6Q23.3) WILD-TYPE     14     10      3      5
D24V6, multiclass
        clus
vv       DEL PEAK 11(6Q23.3) MUTATED DEL PEAK 11(6Q23.3) WILD-TYPE
  CLUS_1                           8                            14
  CLUS_2                           1                            10
  CLUS_3                           4                             3
  CLUS_4                           3                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q23.3) MUTATED        9      3      4
  DEL PEAK 11(6Q23.3) WILD-TYPE      7     13     11
D24V7, multiclass
        clus
vv       DEL PEAK 11(6Q23.3) MUTATED DEL PEAK 11(6Q23.3) WILD-TYPE
  CLUS_1                           9                             7
  CLUS_2                           3                            13
  CLUS_3                           4                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q23.3) MUTATED        3      3      5      5      0
  DEL PEAK 11(6Q23.3) WILD-TYPE      6      9      3      7      6
D24V8, multiclass
        clus
vv       DEL PEAK 11(6Q23.3) MUTATED DEL PEAK 11(6Q23.3) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           3                             9
  CLUS_3                           5                             3
  CLUS_4                           5                             7
  CLUS_5                           0                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q23.3) MUTATED        5      4      3      2
  DEL PEAK 11(6Q23.3) WILD-TYPE      4      6      6     12
D24V9, multiclass
        clus
vv       DEL PEAK 11(6Q23.3) MUTATED DEL PEAK 11(6Q23.3) WILD-TYPE
  CLUS_1                           5                             4
  CLUS_2                           4                             6
  CLUS_3                           3                             6
  CLUS_4                           2                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q23.3) MUTATED        4      5      2      3
  DEL PEAK 11(6Q23.3) WILD-TYPE      4     10      3     11
D24V10, multiclass
        clus
vv       DEL PEAK 11(6Q23.3) MUTATED DEL PEAK 11(6Q23.3) WILD-TYPE
  CLUS_1                           4                             4
  CLUS_2                           5                            10
  CLUS_3                           2                             3
  CLUS_4                           3                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK 12(7Q33) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7Q33) MUTATED        3      1      1
  DEL PEAK 12(7Q33) WILD-TYPE     17      6     20
D25V1, multiclass
        clus
vv       DEL PEAK 12(7Q33) MUTATED DEL PEAK 12(7Q33) WILD-TYPE
  CLUS_1                         3                          17
  CLUS_2                         1                           6
  CLUS_3                         1                          20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(7Q33) MUTATED        2      1      2      0
  DEL PEAK 12(7Q33) WILD-TYPE      7     12     17      7
D25V2, multiclass
        clus
vv       DEL PEAK 12(7Q33) MUTATED DEL PEAK 12(7Q33) WILD-TYPE
  CLUS_1                         2                           7
  CLUS_2                         1                          12
  CLUS_3                         2                          17
  CLUS_4                         0                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7Q33) MUTATED        0      0      0      1      0      1
  DEL PEAK 12(7Q33) WILD-TYPE      6      5      5      5      6      4
D25V3, multiclass
[1] "Remove cluster labels:"    "DEL PEAK 12(7Q33) MUTATED"
clus
  DEL PEAK 12(7Q33) MUTATED DEL PEAK 12(7Q33) WILD-TYPE 
                          2                          31 
                 TCGA-FA-8693                  TCGA-FA-A4BB 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-FA-A4XK                  TCGA-FA-A6HN 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-FA-A6HO                  TCGA-FA-A7DS 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-FA-A7Q1                  TCGA-FA-A82F 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-FA-A86F                  TCGA-FF-8041 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-FF-8042                  TCGA-FF-8043 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-FF-8046                  TCGA-FF-8047 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-FF-8061                  TCGA-FF-8062 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-FF-A7CR                  TCGA-FF-A7CW 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-FF-A7CX                  TCGA-FM-8000 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-G8-6325                  TCGA-G8-6326 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-G8-6906                  TCGA-G8-6914 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-GS-A9TT                  TCGA-GS-A9TV 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-GS-A9TX                  TCGA-GS-A9TZ 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-RQ-A68N                  TCGA-RQ-A6JB 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-VB-A8QN 
"DEL PEAK 12(7Q33) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7Q33) MUTATED        1      1      0
  DEL PEAK 12(7Q33) WILD-TYPE      5     14     12
D25V4, multiclass
[1] "Remove cluster labels:"    "DEL PEAK 12(7Q33) MUTATED"
clus
  DEL PEAK 12(7Q33) MUTATED DEL PEAK 12(7Q33) WILD-TYPE 
                          2                          31 
                 TCGA-FA-8693                  TCGA-FA-A4BB 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-FA-A4XK                  TCGA-FA-A6HN 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-FA-A6HO                  TCGA-FA-A7DS 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-FA-A7Q1                  TCGA-FA-A82F 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-FA-A86F                  TCGA-FF-8041 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-FF-8042                  TCGA-FF-8043 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-FF-8046                  TCGA-FF-8047 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-FF-8061                  TCGA-FF-8062 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-FF-A7CR                  TCGA-FF-A7CW 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-FF-A7CX                  TCGA-FM-8000 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-G8-6325                  TCGA-G8-6326 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-G8-6906                  TCGA-G8-6914 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-GS-A9TT                  TCGA-GS-A9TV 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-GS-A9TX                  TCGA-GS-A9TZ 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-RQ-A68N                  TCGA-RQ-A6JB 
"DEL PEAK 12(7Q33) WILD-TYPE" "DEL PEAK 12(7Q33) WILD-TYPE" 
                 TCGA-VB-A8QN 
"DEL PEAK 12(7Q33) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7Q33) MUTATED        0      0      0      1      2      2
  DEL PEAK 12(7Q33) WILD-TYPE     10     12      9      2      6      4
D25V5, multiclass
        clus
vv       DEL PEAK 12(7Q33) MUTATED DEL PEAK 12(7Q33) WILD-TYPE
  CLUS_1                         0                          10
  CLUS_2                         0                          12
  CLUS_3                         0                           9
  CLUS_4                         1                           2
  CLUS_5                         2                           6
  CLUS_6                         2                           4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(7Q33) MUTATED        2      0      1      2
  DEL PEAK 12(7Q33) WILD-TYPE     20     11      6      6
D25V6, multiclass
        clus
vv       DEL PEAK 12(7Q33) MUTATED DEL PEAK 12(7Q33) WILD-TYPE
  CLUS_1                         2                          20
  CLUS_2                         0                          11
  CLUS_3                         1                           6
  CLUS_4                         2                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7Q33) MUTATED        2      1      2
  DEL PEAK 12(7Q33) WILD-TYPE     14     15     13
D25V7, multiclass
        clus
vv       DEL PEAK 12(7Q33) MUTATED DEL PEAK 12(7Q33) WILD-TYPE
  CLUS_1                         2                          14
  CLUS_2                         1                          15
  CLUS_3                         2                          13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(7Q33) MUTATED        0      0      1      3      1
  DEL PEAK 12(7Q33) WILD-TYPE      9     12      7      9      5
D25V8, multiclass
        clus
vv       DEL PEAK 12(7Q33) MUTATED DEL PEAK 12(7Q33) WILD-TYPE
  CLUS_1                         0                           9
  CLUS_2                         0                          12
  CLUS_3                         1                           7
  CLUS_4                         3                           9
  CLUS_5                         1                           5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(7Q33) MUTATED        1      2      1      1
  DEL PEAK 12(7Q33) WILD-TYPE      8      8      8     13
D25V9, multiclass
        clus
vv       DEL PEAK 12(7Q33) MUTATED DEL PEAK 12(7Q33) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         2                           8
  CLUS_3                         1                           8
  CLUS_4                         1                          13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(7Q33) MUTATED        1      2      1      1
  DEL PEAK 12(7Q33) WILD-TYPE      7     13      4     13
D25V10, multiclass
        clus
vv       DEL PEAK 12(7Q33) MUTATED DEL PEAK 12(7Q33) WILD-TYPE
  CLUS_1                         1                           7
  CLUS_2                         2                          13
  CLUS_3                         1                           4
  CLUS_4                         1                          13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK 13(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P23.2) MUTATED        4      0      8
  DEL PEAK 13(8P23.2) WILD-TYPE     16      7     13
D26V1, multiclass
        clus
vv       DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE
  CLUS_1                           4                            16
  CLUS_2                           0                             7
  CLUS_3                           8                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8P23.2) MUTATED        2      2      7      1
  DEL PEAK 13(8P23.2) WILD-TYPE      7     11     12      6
D26V2, multiclass
        clus
vv       DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                           2                            11
  CLUS_3                           7                            12
  CLUS_4                           1                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(8P23.2) MUTATED        2      1      3      1      1      1
  DEL PEAK 13(8P23.2) WILD-TYPE      4      4      2      5      5      4
D26V3, multiclass
        clus
vv       DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE
  CLUS_1                           2                             4
  CLUS_2                           1                             4
  CLUS_3                           3                             2
  CLUS_4                           1                             5
  CLUS_5                           1                             5
  CLUS_6                           1                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P23.2) MUTATED        1      3      5
  DEL PEAK 13(8P23.2) WILD-TYPE      5     12      7
D26V4, multiclass
        clus
vv       DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           3                            12
  CLUS_3                           5                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(8P23.2) MUTATED        1      3      3      2      1      2
  DEL PEAK 13(8P23.2) WILD-TYPE      9      9      6      1      7      4
D26V5, multiclass
        clus
vv       DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE
  CLUS_1                           1                             9
  CLUS_2                           3                             9
  CLUS_3                           3                             6
  CLUS_4                           2                             1
  CLUS_5                           1                             7
  CLUS_6                           2                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8P23.2) MUTATED        5      3      2      2
  DEL PEAK 13(8P23.2) WILD-TYPE     17      8      5      6
D26V6, multiclass
        clus
vv       DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE
  CLUS_1                           5                            17
  CLUS_2                           3                             8
  CLUS_3                           2                             5
  CLUS_4                           2                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8P23.2) MUTATED        5      3      4
  DEL PEAK 13(8P23.2) WILD-TYPE     11     13     11
D26V7, multiclass
        clus
vv       DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE
  CLUS_1                           5                            11
  CLUS_2                           3                            13
  CLUS_3                           4                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(8P23.2) MUTATED        0      5      4      2      1
  DEL PEAK 13(8P23.2) WILD-TYPE      9      7      4     10      5
D26V8, multiclass
        clus
vv       DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE
  CLUS_1                           0                             9
  CLUS_2                           5                             7
  CLUS_3                           4                             4
  CLUS_4                           2                            10
  CLUS_5                           1                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8P23.2) MUTATED        3      2      2      2
  DEL PEAK 13(8P23.2) WILD-TYPE      6      8      7     12
D26V9, multiclass
        clus
vv       DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           2                             8
  CLUS_3                           2                             7
  CLUS_4                           2                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8P23.2) MUTATED        3      2      1      3
  DEL PEAK 13(8P23.2) WILD-TYPE      5     13      4     11
D26V10, multiclass
        clus
vv       DEL PEAK 13(8P23.2) MUTATED DEL PEAK 13(8P23.2) WILD-TYPE
  CLUS_1                           3                             5
  CLUS_2                           2                            13
  CLUS_3                           1                             4
  CLUS_4                           3                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK 14(8Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8Q12.1) MUTATED        0      1      8
  DEL PEAK 14(8Q12.1) WILD-TYPE     20      6     13
D27V1, multiclass
        clus
vv       DEL PEAK 14(8Q12.1) MUTATED DEL PEAK 14(8Q12.1) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           1                             6
  CLUS_3                           8                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8Q12.1) MUTATED        1      2      6      0
  DEL PEAK 14(8Q12.1) WILD-TYPE      8     11     13      7
D27V2, multiclass
        clus
vv       DEL PEAK 14(8Q12.1) MUTATED DEL PEAK 14(8Q12.1) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           2                            11
  CLUS_3                           6                            13
  CLUS_4                           0                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8Q12.1) MUTATED        0      2      2      1      0      1
  DEL PEAK 14(8Q12.1) WILD-TYPE      6      3      3      5      6      4
D27V3, multiclass
        clus
vv       DEL PEAK 14(8Q12.1) MUTATED DEL PEAK 14(8Q12.1) WILD-TYPE
  CLUS_1                           0                             6
  CLUS_2                           2                             3
  CLUS_3                           2                             3
  CLUS_4                           1                             5
  CLUS_5                           0                             6
  CLUS_6                           1                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8Q12.1) MUTATED        0      1      5
  DEL PEAK 14(8Q12.1) WILD-TYPE      6     14      7
D27V4, multiclass
        clus
vv       DEL PEAK 14(8Q12.1) MUTATED DEL PEAK 14(8Q12.1) WILD-TYPE
  CLUS_1                           0                             6
  CLUS_2                           1                            14
  CLUS_3                           5                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8Q12.1) MUTATED        0      2      4      1      2      0
  DEL PEAK 14(8Q12.1) WILD-TYPE     10     10      5      2      6      6
D27V5, multiclass
        clus
vv       DEL PEAK 14(8Q12.1) MUTATED DEL PEAK 14(8Q12.1) WILD-TYPE
  CLUS_1                           0                            10
  CLUS_2                           2                            10
  CLUS_3                           4                             5
  CLUS_4                           1                             2
  CLUS_5                           2                             6
  CLUS_6                           0                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8Q12.1) MUTATED        4      2      1      2
  DEL PEAK 14(8Q12.1) WILD-TYPE     18      9      6      6
D27V6, multiclass
        clus
vv       DEL PEAK 14(8Q12.1) MUTATED DEL PEAK 14(8Q12.1) WILD-TYPE
  CLUS_1                           4                            18
  CLUS_2                           2                             9
  CLUS_3                           1                             6
  CLUS_4                           2                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8Q12.1) MUTATED        1      3      5
  DEL PEAK 14(8Q12.1) WILD-TYPE     15     13     10
D27V7, multiclass
        clus
vv       DEL PEAK 14(8Q12.1) MUTATED DEL PEAK 14(8Q12.1) WILD-TYPE
  CLUS_1                           1                            15
  CLUS_2                           3                            13
  CLUS_3                           5                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8Q12.1) MUTATED        0      3      1      3      2
  DEL PEAK 14(8Q12.1) WILD-TYPE      9      9      7      9      4
D27V8, multiclass
        clus
vv       DEL PEAK 14(8Q12.1) MUTATED DEL PEAK 14(8Q12.1) WILD-TYPE
  CLUS_1                           0                             9
  CLUS_2                           3                             9
  CLUS_3                           1                             7
  CLUS_4                           3                             9
  CLUS_5                           2                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8Q12.1) MUTATED        1      1      3      2
  DEL PEAK 14(8Q12.1) WILD-TYPE      8      9      6     12
D27V9, multiclass
        clus
vv       DEL PEAK 14(8Q12.1) MUTATED DEL PEAK 14(8Q12.1) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           1                             9
  CLUS_3                           3                             6
  CLUS_4                           2                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8Q12.1) MUTATED        1      1      3      2
  DEL PEAK 14(8Q12.1) WILD-TYPE      7     14      2     12
D27V10, multiclass
        clus
vv       DEL PEAK 14(8Q12.1) MUTATED DEL PEAK 14(8Q12.1) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                           1                            14
  CLUS_3                           3                             2
  CLUS_4                           2                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK 15(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED        5      0     12
  DEL PEAK 15(9P21.3) WILD-TYPE     15      7      9
D28V1, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           5                            15
  CLUS_2                           0                             7
  CLUS_3                          12                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P21.3) MUTATED        0      3     13      1
  DEL PEAK 15(9P21.3) WILD-TYPE      9     10      6      6
D28V2, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           0                             9
  CLUS_2                           3                            10
  CLUS_3                          13                             6
  CLUS_4                           1                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P21.3) MUTATED        1      1      3      3      2      2
  DEL PEAK 15(9P21.3) WILD-TYPE      5      4      2      3      4      3
D28V3, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           1                             4
  CLUS_3                           3                             2
  CLUS_4                           3                             3
  CLUS_5                           2                             4
  CLUS_6                           2                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED        1      6      5
  DEL PEAK 15(9P21.3) WILD-TYPE      5      9      7
D28V4, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           6                             9
  CLUS_3                           5                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P21.3) MUTATED        4      3      7      2      0      1
  DEL PEAK 15(9P21.3) WILD-TYPE      6      9      2      1      8      5
D28V5, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           4                             6
  CLUS_2                           3                             9
  CLUS_3                           7                             2
  CLUS_4                           2                             1
  CLUS_5                           0                             8
  CLUS_6                           1                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P21.3) MUTATED        5      3      5      4
  DEL PEAK 15(9P21.3) WILD-TYPE     17      8      2      4
D28V6, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           5                            17
  CLUS_2                           3                             8
  CLUS_3                           5                             2
  CLUS_4                           4                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P21.3) MUTATED        8      3      6
  DEL PEAK 15(9P21.3) WILD-TYPE      8     13      9
D28V7, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           8                             8
  CLUS_2                           3                            13
  CLUS_3                           6                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(9P21.3) MUTATED        3      1      4      8      1
  DEL PEAK 15(9P21.3) WILD-TYPE      6     11      4      4      5
D28V8, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           1                            11
  CLUS_3                           4                             4
  CLUS_4                           8                             4
  CLUS_5                           1                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P21.3) MUTATED        3      1      7      4
  DEL PEAK 15(9P21.3) WILD-TYPE      6      9      2     10
D28V9, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           1                             9
  CLUS_3                           7                             2
  CLUS_4                           4                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P21.3) MUTATED        2      2      5      6
  DEL PEAK 15(9P21.3) WILD-TYPE      6     13      0      8
D28V10, multiclass
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           2                            13
  CLUS_3                           5                             0
  CLUS_4                           6                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK 16(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED        2      2      3
  DEL PEAK 16(10Q23.31) WILD-TYPE     18      5     18
D29V1, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                             2                              18
  CLUS_2                             2                               5
  CLUS_3                             3                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q23.31) MUTATED        1      0      3      3
  DEL PEAK 16(10Q23.31) WILD-TYPE      8     13     16      4
D29V2, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                             1                               8
  CLUS_2                             0                              13
  CLUS_3                             3                              16
  CLUS_4                             3                               4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(10Q23.31) MUTATED        0      0      1      0      0      1
  DEL PEAK 16(10Q23.31) WILD-TYPE      6      5      4      6      6      4
D29V3, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 16(10Q23.31) MUTATED"
clus
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                              2                              31 
                     TCGA-FA-8693                      TCGA-FA-A4BB 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FA-A4XK                      TCGA-FA-A6HN 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FA-A6HO                      TCGA-FA-A7DS 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FA-A82F                      TCGA-FA-A86F 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FF-8041                      TCGA-FF-8042 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FF-8043                      TCGA-FF-8046 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FF-8047                      TCGA-FF-8061 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FF-8062                      TCGA-FF-A7CR 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FF-A7CW                      TCGA-FF-A7CX 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FM-8000                      TCGA-G8-6325 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-G8-6326                      TCGA-G8-6906 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-G8-6914                      TCGA-GS-A9TT 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-GS-A9TV                      TCGA-GS-A9TW 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-GS-A9TX                      TCGA-GS-A9TZ 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-GS-A9U4                      TCGA-RQ-A68N 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-VB-A8QN 
"DEL PEAK 16(10Q23.31) WILD-TYPE" 
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED        1      0      1
  DEL PEAK 16(10Q23.31) WILD-TYPE      5     15     11
D29V4, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 16(10Q23.31) MUTATED"
clus
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                              2                              31 
                     TCGA-FA-8693                      TCGA-FA-A4BB 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FA-A4XK                      TCGA-FA-A6HN 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FA-A6HO                      TCGA-FA-A7DS 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FA-A82F                      TCGA-FA-A86F 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FF-8041                      TCGA-FF-8042 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FF-8043                      TCGA-FF-8046 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FF-8047                      TCGA-FF-8061 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FF-8062                      TCGA-FF-A7CR 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FF-A7CW                      TCGA-FF-A7CX 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-FM-8000                      TCGA-G8-6325 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-G8-6326                      TCGA-G8-6906 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-G8-6914                      TCGA-GS-A9TT 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-GS-A9TV                      TCGA-GS-A9TW 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-GS-A9TX                      TCGA-GS-A9TZ 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-GS-A9U4                      TCGA-RQ-A68N 
"DEL PEAK 16(10Q23.31) WILD-TYPE" "DEL PEAK 16(10Q23.31) WILD-TYPE" 
                     TCGA-VB-A8QN 
"DEL PEAK 16(10Q23.31) WILD-TYPE" 
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(10Q23.31) MUTATED        1      1      0      2      3      0
  DEL PEAK 16(10Q23.31) WILD-TYPE      9     11      9      1      5      6
D29V5, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                             1                               9
  CLUS_2                             1                              11
  CLUS_3                             0                               9
  CLUS_4                             2                               1
  CLUS_5                             3                               5
  CLUS_6                             0                               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q23.31) MUTATED        3      1      3      0
  DEL PEAK 16(10Q23.31) WILD-TYPE     19     10      4      8
D29V6, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                             3                              19
  CLUS_2                             1                              10
  CLUS_3                             3                               4
  CLUS_4                             0                               8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED        2      5      0
  DEL PEAK 16(10Q23.31) WILD-TYPE     14     11     15
D29V7, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                             2                              14
  CLUS_2                             5                              11
  CLUS_3                             0                              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(10Q23.31) MUTATED        1      2      2      0      2
  DEL PEAK 16(10Q23.31) WILD-TYPE      8     10      6     12      4
D29V8, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                             1                               8
  CLUS_2                             2                              10
  CLUS_3                             2                               6
  CLUS_4                             0                              12
  CLUS_5                             2                               4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q23.31) MUTATED        1      0      1      4
  DEL PEAK 16(10Q23.31) WILD-TYPE      8     10      8     10
D29V9, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                             1                               8
  CLUS_2                             0                              10
  CLUS_3                             1                               8
  CLUS_4                             4                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q23.31) MUTATED        0      0      0      6
  DEL PEAK 16(10Q23.31) WILD-TYPE      8     15      5      8
D29V10, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                             0                               8
  CLUS_2                             0                              15
  CLUS_3                             0                               5
  CLUS_4                             6                               8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK 17(12P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(12P13.2) MUTATED        0      0      8
  DEL PEAK 17(12P13.2) WILD-TYPE     20      7     13
D30V1, multiclass
        clus
vv       DEL PEAK 17(12P13.2) MUTATED DEL PEAK 17(12P13.2) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            0                              7
  CLUS_3                            8                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(12P13.2) MUTATED        0      1      4      3
  DEL PEAK 17(12P13.2) WILD-TYPE      9     12     15      4
D30V2, multiclass
        clus
vv       DEL PEAK 17(12P13.2) MUTATED DEL PEAK 17(12P13.2) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            1                             12
  CLUS_3                            4                             15
  CLUS_4                            3                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(12P13.2) MUTATED        1      0      1      1      0      1
  DEL PEAK 17(12P13.2) WILD-TYPE      5      5      4      5      6      4
D30V3, multiclass
        clus
vv       DEL PEAK 17(12P13.2) MUTATED DEL PEAK 17(12P13.2) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            0                              5
  CLUS_3                            1                              4
  CLUS_4                            1                              5
  CLUS_5                            0                              6
  CLUS_6                            1                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(12P13.2) MUTATED        0      2      2
  DEL PEAK 17(12P13.2) WILD-TYPE      6     13     10
D30V4, multiclass
        clus
vv       DEL PEAK 17(12P13.2) MUTATED DEL PEAK 17(12P13.2) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            2                             13
  CLUS_3                            2                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(12P13.2) MUTATED        0      2      3      1      2      0
  DEL PEAK 17(12P13.2) WILD-TYPE     10     10      6      2      6      6
D30V5, multiclass
        clus
vv       DEL PEAK 17(12P13.2) MUTATED DEL PEAK 17(12P13.2) WILD-TYPE
  CLUS_1                            0                             10
  CLUS_2                            2                             10
  CLUS_3                            3                              6
  CLUS_4                            1                              2
  CLUS_5                            2                              6
  CLUS_6                            0                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(12P13.2) MUTATED        3      2      1      2
  DEL PEAK 17(12P13.2) WILD-TYPE     19      9      6      6
D30V6, multiclass
        clus
vv       DEL PEAK 17(12P13.2) MUTATED DEL PEAK 17(12P13.2) WILD-TYPE
  CLUS_1                            3                             19
  CLUS_2                            2                              9
  CLUS_3                            1                              6
  CLUS_4                            2                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(12P13.2) MUTATED        1      4      3
  DEL PEAK 17(12P13.2) WILD-TYPE     15     12     12
D30V7, multiclass
        clus
vv       DEL PEAK 17(12P13.2) MUTATED DEL PEAK 17(12P13.2) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            4                             12
  CLUS_3                            3                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(12P13.2) MUTATED        1      3      1      2      1
  DEL PEAK 17(12P13.2) WILD-TYPE      8      9      7     10      5
D30V8, multiclass
        clus
vv       DEL PEAK 17(12P13.2) MUTATED DEL PEAK 17(12P13.2) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            3                              9
  CLUS_3                            1                              7
  CLUS_4                            2                             10
  CLUS_5                            1                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(12P13.2) MUTATED        1      0      1      3
  DEL PEAK 17(12P13.2) WILD-TYPE      8     10      8     11
D30V9, multiclass
        clus
vv       DEL PEAK 17(12P13.2) MUTATED DEL PEAK 17(12P13.2) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            0                             10
  CLUS_3                            1                              8
  CLUS_4                            3                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(12P13.2) MUTATED        1      0      1      3
  DEL PEAK 17(12P13.2) WILD-TYPE      7     15      4     11
D30V10, multiclass
        clus
vv       DEL PEAK 17(12P13.2) MUTATED DEL PEAK 17(12P13.2) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            0                             15
  CLUS_3                            1                              4
  CLUS_4                            3                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK 18(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(13Q14.2) MUTATED        3      1      3
  DEL PEAK 18(13Q14.2) WILD-TYPE     17      6     18
D31V1, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                            3                             17
  CLUS_2                            1                              6
  CLUS_3                            3                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(13Q14.2) MUTATED        1      0      3      3
  DEL PEAK 18(13Q14.2) WILD-TYPE      8     13     16      4
D31V2, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            0                             13
  CLUS_3                            3                             16
  CLUS_4                            3                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(13Q14.2) MUTATED        2      0      0      0      1      0
  DEL PEAK 18(13Q14.2) WILD-TYPE      4      5      5      6      5      5
D31V3, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            0                              5
  CLUS_3                            0                              5
  CLUS_4                            0                              6
  CLUS_5                            1                              5
  CLUS_6                            0                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(13Q14.2) MUTATED        0      3      0
  DEL PEAK 18(13Q14.2) WILD-TYPE      6     12     12
D31V4, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            3                             12
  CLUS_3                            0                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(13Q14.2) MUTATED        1      0      0      1      4      1
  DEL PEAK 18(13Q14.2) WILD-TYPE      9     12      9      2      4      5
D31V5, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                            1                              9
  CLUS_2                            0                             12
  CLUS_3                            0                              9
  CLUS_4                            1                              2
  CLUS_5                            4                              4
  CLUS_6                            1                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(13Q14.2) MUTATED        5      0      1      1
  DEL PEAK 18(13Q14.2) WILD-TYPE     17     11      6      7
D31V6, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                            5                             17
  CLUS_2                            0                             11
  CLUS_3                            1                              6
  CLUS_4                            1                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(13Q14.2) MUTATED        2      4      1
  DEL PEAK 18(13Q14.2) WILD-TYPE     14     12     14
D31V7, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                            2                             14
  CLUS_2                            4                             12
  CLUS_3                            1                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(13Q14.2) MUTATED        1      2      2      0      2
  DEL PEAK 18(13Q14.2) WILD-TYPE      8     10      6     12      4
D31V8, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            2                             10
  CLUS_3                            2                              6
  CLUS_4                            0                             12
  CLUS_5                            2                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(13Q14.2) MUTATED        2      0      0      3
  DEL PEAK 18(13Q14.2) WILD-TYPE      7     10      9     11
D31V9, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            0                             10
  CLUS_3                            0                              9
  CLUS_4                            3                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(13Q14.2) MUTATED        2      0      0      3
  DEL PEAK 18(13Q14.2) WILD-TYPE      6     15      5     11
D31V10, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            0                             15
  CLUS_3                            0                              5
  CLUS_4                            3                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK 19(15Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(15Q21.1) MUTATED        4      2      7
  DEL PEAK 19(15Q21.1) WILD-TYPE     16      5     14
D32V1, multiclass
        clus
vv       DEL PEAK 19(15Q21.1) MUTATED DEL PEAK 19(15Q21.1) WILD-TYPE
  CLUS_1                            4                             16
  CLUS_2                            2                              5
  CLUS_3                            7                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(15Q21.1) MUTATED        4      2      3      4
  DEL PEAK 19(15Q21.1) WILD-TYPE      5     11     16      3
D32V2, multiclass
        clus
vv       DEL PEAK 19(15Q21.1) MUTATED DEL PEAK 19(15Q21.1) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            2                             11
  CLUS_3                            3                             16
  CLUS_4                            4                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(15Q21.1) MUTATED        2      1      1      2      0      1
  DEL PEAK 19(15Q21.1) WILD-TYPE      4      4      4      4      6      4
D32V3, multiclass
        clus
vv       DEL PEAK 19(15Q21.1) MUTATED DEL PEAK 19(15Q21.1) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            1                              4
  CLUS_3                            1                              4
  CLUS_4                            2                              4
  CLUS_5                            0                              6
  CLUS_6                            1                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(15Q21.1) MUTATED        2      3      2
  DEL PEAK 19(15Q21.1) WILD-TYPE      4     12     10
D32V4, multiclass
        clus
vv       DEL PEAK 19(15Q21.1) MUTATED DEL PEAK 19(15Q21.1) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            3                             12
  CLUS_3                            2                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(15Q21.1) MUTATED        3      3      1      2      3      1
  DEL PEAK 19(15Q21.1) WILD-TYPE      7      9      8      1      5      5
D32V5, multiclass
        clus
vv       DEL PEAK 19(15Q21.1) MUTATED DEL PEAK 19(15Q21.1) WILD-TYPE
  CLUS_1                            3                              7
  CLUS_2                            3                              9
  CLUS_3                            1                              8
  CLUS_4                            2                              1
  CLUS_5                            3                              5
  CLUS_6                            1                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(15Q21.1) MUTATED        5      3      4      1
  DEL PEAK 19(15Q21.1) WILD-TYPE     17      8      3      7
D32V6, multiclass
        clus
vv       DEL PEAK 19(15Q21.1) MUTATED DEL PEAK 19(15Q21.1) WILD-TYPE
  CLUS_1                            5                             17
  CLUS_2                            3                              8
  CLUS_3                            4                              3
  CLUS_4                            1                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(15Q21.1) MUTATED        4      5      3
  DEL PEAK 19(15Q21.1) WILD-TYPE     12     11     12
D32V7, multiclass
        clus
vv       DEL PEAK 19(15Q21.1) MUTATED DEL PEAK 19(15Q21.1) WILD-TYPE
  CLUS_1                            4                             12
  CLUS_2                            5                             11
  CLUS_3                            3                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(15Q21.1) MUTATED        2      3      1      3      3
  DEL PEAK 19(15Q21.1) WILD-TYPE      7      9      7      9      3
D32V8, multiclass
        clus
vv       DEL PEAK 19(15Q21.1) MUTATED DEL PEAK 19(15Q21.1) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            3                              9
  CLUS_3                            1                              7
  CLUS_4                            3                              9
  CLUS_5                            3                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(15Q21.1) MUTATED        2      2      2      5
  DEL PEAK 19(15Q21.1) WILD-TYPE      7      8      7      9
D32V9, multiclass
        clus
vv       DEL PEAK 19(15Q21.1) MUTATED DEL PEAK 19(15Q21.1) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            2                              8
  CLUS_3                            2                              7
  CLUS_4                            5                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(15Q21.1) MUTATED        1      2      2      6
  DEL PEAK 19(15Q21.1) WILD-TYPE      7     13      3      8
D32V10, multiclass
        clus
vv       DEL PEAK 19(15Q21.1) MUTATED DEL PEAK 19(15Q21.1) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            2                             13
  CLUS_3                            2                              3
  CLUS_4                            6                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK 20(16P13.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(16P13.13) MUTATED        4      0      2
  DEL PEAK 20(16P13.13) WILD-TYPE     16      7     19
D33V1, multiclass
        clus
vv       DEL PEAK 20(16P13.13) MUTATED DEL PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                             4                              16
  CLUS_2                             0                               7
  CLUS_3                             2                              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16P13.13) MUTATED        2      1      2      1
  DEL PEAK 20(16P13.13) WILD-TYPE      7     12     17      6
D33V2, multiclass
        clus
vv       DEL PEAK 20(16P13.13) MUTATED DEL PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                             2                               7
  CLUS_2                             1                              12
  CLUS_3                             2                              17
  CLUS_4                             1                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(16P13.13) MUTATED        2      0      1      0      3      0
  DEL PEAK 20(16P13.13) WILD-TYPE      4      5      4      6      3      5
D33V3, multiclass
        clus
vv       DEL PEAK 20(16P13.13) MUTATED DEL PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                             2                               4
  CLUS_2                             0                               5
  CLUS_3                             1                               4
  CLUS_4                             0                               6
  CLUS_5                             3                               3
  CLUS_6                             0                               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(16P13.13) MUTATED        0      5      1
  DEL PEAK 20(16P13.13) WILD-TYPE      6     10     11
D33V4, multiclass
        clus
vv       DEL PEAK 20(16P13.13) MUTATED DEL PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                             0                               6
  CLUS_2                             5                              10
  CLUS_3                             1                              11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(16P13.13) MUTATED        1      1      0      0      3      1
  DEL PEAK 20(16P13.13) WILD-TYPE      9     11      9      3      5      5
D33V5, multiclass
        clus
vv       DEL PEAK 20(16P13.13) MUTATED DEL PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                             1                               9
  CLUS_2                             1                              11
  CLUS_3                             0                               9
  CLUS_4                             0                               3
  CLUS_5                             3                               5
  CLUS_6                             1                               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16P13.13) MUTATED        4      1      0      1
  DEL PEAK 20(16P13.13) WILD-TYPE     18     10      7      7
D33V6, multiclass
        clus
vv       DEL PEAK 20(16P13.13) MUTATED DEL PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                             4                              18
  CLUS_2                             1                              10
  CLUS_3                             0                               7
  CLUS_4                             1                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(16P13.13) MUTATED        1      3      2
  DEL PEAK 20(16P13.13) WILD-TYPE     15     13     13
D33V7, multiclass
        clus
vv       DEL PEAK 20(16P13.13) MUTATED DEL PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                             1                              15
  CLUS_2                             3                              13
  CLUS_3                             2                              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(16P13.13) MUTATED        0      2      1      0      3
  DEL PEAK 20(16P13.13) WILD-TYPE      9     10      7     12      3
D33V8, multiclass
        clus
vv       DEL PEAK 20(16P13.13) MUTATED DEL PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                             0                               9
  CLUS_2                             2                              10
  CLUS_3                             1                               7
  CLUS_4                             0                              12
  CLUS_5                             3                               3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16P13.13) MUTATED        1      0      0      3
  DEL PEAK 20(16P13.13) WILD-TYPE      8     10      9     11
D33V9, multiclass
        clus
vv       DEL PEAK 20(16P13.13) MUTATED DEL PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                             1                               8
  CLUS_2                             0                              10
  CLUS_3                             0                               9
  CLUS_4                             3                              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16P13.13) MUTATED        1      1      0      2
  DEL PEAK 20(16P13.13) WILD-TYPE      7     14      5     12
D33V10, multiclass
        clus
vv       DEL PEAK 20(16P13.13) MUTATED DEL PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                             1                               7
  CLUS_2                             1                              14
  CLUS_3                             0                               5
  CLUS_4                             2                              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 21(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(16Q23.1) MUTATED        0      1      4
  DEL PEAK 21(16Q23.1) WILD-TYPE     20      6     17
D34V1, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            1                              6
  CLUS_3                            4                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(16Q23.1) MUTATED        1      1      1      2
  DEL PEAK 21(16Q23.1) WILD-TYPE      8     12     18      5
D34V2, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            1                             12
  CLUS_3                            1                             18
  CLUS_4                            2                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(16Q23.1) MUTATED        1      1      2      0      0      0
  DEL PEAK 21(16Q23.1) WILD-TYPE      5      4      3      6      6      5
D34V3, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            1                              4
  CLUS_3                            2                              3
  CLUS_4                            0                              6
  CLUS_5                            0                              6
  CLUS_6                            0                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(16Q23.1) MUTATED        0      1      3
  DEL PEAK 21(16Q23.1) WILD-TYPE      6     14      9
D34V4, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            1                             14
  CLUS_3                            3                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(16Q23.1) MUTATED        0      2      1      1      1      0
  DEL PEAK 21(16Q23.1) WILD-TYPE     10     10      8      2      7      6
D34V5, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            0                             10
  CLUS_2                            2                             10
  CLUS_3                            1                              8
  CLUS_4                            1                              2
  CLUS_5                            1                              7
  CLUS_6                            0                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(16Q23.1) MUTATED        2      2      1      0
  DEL PEAK 21(16Q23.1) WILD-TYPE     20      9      6      8
D34V6, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            2                             20
  CLUS_2                            2                              9
  CLUS_3                            1                              6
  CLUS_4                            0                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(16Q23.1) MUTATED        0      4      1
  DEL PEAK 21(16Q23.1) WILD-TYPE     16     12     14
D34V7, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            0                             16
  CLUS_2                            4                             12
  CLUS_3                            1                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(16Q23.1) MUTATED        1      2      0      0      2
  DEL PEAK 21(16Q23.1) WILD-TYPE      8     10      8     12      4
D34V8, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            2                             10
  CLUS_3                            0                              8
  CLUS_4                            0                             12
  CLUS_5                            2                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(16Q23.1) MUTATED        0      1      0      3
  DEL PEAK 21(16Q23.1) WILD-TYPE      9      9      9     11
D34V9, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            1                              9
  CLUS_3                            0                              9
  CLUS_4                            3                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(16Q23.1) MUTATED        0      1      0      3
  DEL PEAK 21(16Q23.1) WILD-TYPE      8     14      5     11
D34V10, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            0                              8
  CLUS_2                            1                             14
  CLUS_3                            0                              5
  CLUS_4                            3                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 22(17P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(17P13.1) MUTATED        4      0      9
  DEL PEAK 22(17P13.1) WILD-TYPE     16      7     12
D35V1, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            4                             16
  CLUS_2                            0                              7
  CLUS_3                            9                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(17P13.1) MUTATED        2      2      7      2
  DEL PEAK 22(17P13.1) WILD-TYPE      7     11     12      5
D35V2, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            2                             11
  CLUS_3                            7                             12
  CLUS_4                            2                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(17P13.1) MUTATED        3      1      2      1      1      1
  DEL PEAK 22(17P13.1) WILD-TYPE      3      4      3      5      5      4
D35V3, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            1                              4
  CLUS_3                            2                              3
  CLUS_4                            1                              5
  CLUS_5                            1                              5
  CLUS_6                            1                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(17P13.1) MUTATED        1      4      4
  DEL PEAK 22(17P13.1) WILD-TYPE      5     11      8
D35V4, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            4                             11
  CLUS_3                            4                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(17P13.1) MUTATED        1      2      3      2      3      2
  DEL PEAK 22(17P13.1) WILD-TYPE      9     10      6      1      5      4
D35V5, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            1                              9
  CLUS_2                            2                             10
  CLUS_3                            3                              6
  CLUS_4                            2                              1
  CLUS_5                            3                              5
  CLUS_6                            2                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(17P13.1) MUTATED        7      2      2      2
  DEL PEAK 22(17P13.1) WILD-TYPE     15      9      5      6
D35V6, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            7                             15
  CLUS_2                            2                              9
  CLUS_3                            2                              5
  CLUS_4                            2                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(17P13.1) MUTATED        5      4      4
  DEL PEAK 22(17P13.1) WILD-TYPE     11     12     11
D35V7, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            5                             11
  CLUS_2                            4                             12
  CLUS_3                            4                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(17P13.1) MUTATED        1      3      4      3      2
  DEL PEAK 22(17P13.1) WILD-TYPE      8      9      4      9      4
D35V8, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            3                              9
  CLUS_3                            4                              4
  CLUS_4                            3                              9
  CLUS_5                            2                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(17P13.1) MUTATED        4      1      2      3
  DEL PEAK 22(17P13.1) WILD-TYPE      5      9      7     11
D35V9, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            1                              9
  CLUS_3                            2                              7
  CLUS_4                            3                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(17P13.1) MUTATED        4      2      1      3
  DEL PEAK 22(17P13.1) WILD-TYPE      4     13      4     11
D35V10, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                            2                             13
  CLUS_3                            1                              4
  CLUS_4                            3                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 23(17Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(17Q24.1) MUTATED        5      1      2
  DEL PEAK 23(17Q24.1) WILD-TYPE     15      6     19
D36V1, multiclass
        clus
vv       DEL PEAK 23(17Q24.1) MUTATED DEL PEAK 23(17Q24.1) WILD-TYPE
  CLUS_1                            5                             15
  CLUS_2                            1                              6
  CLUS_3                            2                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(17Q24.1) MUTATED        1      0      6      1
  DEL PEAK 23(17Q24.1) WILD-TYPE      8     13     13      6
D36V2, multiclass
        clus
vv       DEL PEAK 23(17Q24.1) MUTATED DEL PEAK 23(17Q24.1) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            0                             13
  CLUS_3                            6                             13
  CLUS_4                            1                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(17Q24.1) MUTATED        2      0      0      0      2      1
  DEL PEAK 23(17Q24.1) WILD-TYPE      4      5      5      6      4      4
D36V3, multiclass
        clus
vv       DEL PEAK 23(17Q24.1) MUTATED DEL PEAK 23(17Q24.1) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            0                              5
  CLUS_3                            0                              5
  CLUS_4                            0                              6
  CLUS_5                            2                              4
  CLUS_6                            1                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(17Q24.1) MUTATED        1      4      0
  DEL PEAK 23(17Q24.1) WILD-TYPE      5     11     12
D36V4, multiclass
        clus
vv       DEL PEAK 23(17Q24.1) MUTATED DEL PEAK 23(17Q24.1) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            4                             11
  CLUS_3                            0                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(17Q24.1) MUTATED        3      0      0      1      3      1
  DEL PEAK 23(17Q24.1) WILD-TYPE      7     12      9      2      5      5
D36V5, multiclass
        clus
vv       DEL PEAK 23(17Q24.1) MUTATED DEL PEAK 23(17Q24.1) WILD-TYPE
  CLUS_1                            3                              7
  CLUS_2                            0                             12
  CLUS_3                            0                              9
  CLUS_4                            1                              2
  CLUS_5                            3                              5
  CLUS_6                            1                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(17Q24.1) MUTATED        4      0      3      1
  DEL PEAK 23(17Q24.1) WILD-TYPE     18     11      4      7
D36V6, multiclass
        clus
vv       DEL PEAK 23(17Q24.1) MUTATED DEL PEAK 23(17Q24.1) WILD-TYPE
  CLUS_1                            4                             18
  CLUS_2                            0                             11
  CLUS_3                            3                              4
  CLUS_4                            1                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(17Q24.1) MUTATED        4      2      2
  DEL PEAK 23(17Q24.1) WILD-TYPE     12     14     13
D36V7, multiclass
        clus
vv       DEL PEAK 23(17Q24.1) MUTATED DEL PEAK 23(17Q24.1) WILD-TYPE
  CLUS_1                            4                             12
  CLUS_2                            2                             14
  CLUS_3                            2                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(17Q24.1) MUTATED        0      1      4      1      2
  DEL PEAK 23(17Q24.1) WILD-TYPE      9     11      4     11      4
D36V8, multiclass
        clus
vv       DEL PEAK 23(17Q24.1) MUTATED DEL PEAK 23(17Q24.1) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            1                             11
  CLUS_3                            4                              4
  CLUS_4                            1                             11
  CLUS_5                            2                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(17Q24.1) MUTATED        4      0      1      2
  DEL PEAK 23(17Q24.1) WILD-TYPE      5     10      8     12
D36V9, multiclass
        clus
vv       DEL PEAK 23(17Q24.1) MUTATED DEL PEAK 23(17Q24.1) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            0                             10
  CLUS_3                            1                              8
  CLUS_4                            2                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(17Q24.1) MUTATED        3      0      1      3
  DEL PEAK 23(17Q24.1) WILD-TYPE      5     15      4     11
D36V10, multiclass
        clus
vv       DEL PEAK 23(17Q24.1) MUTATED DEL PEAK 23(17Q24.1) WILD-TYPE
  CLUS_1                            3                              5
  CLUS_2                            0                             15
  CLUS_3                            1                              4
  CLUS_4                            3                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 24(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(19P13.2) MUTATED        1      0      3
  DEL PEAK 24(19P13.2) WILD-TYPE     19      7     18
D37V1, multiclass
        clus
vv       DEL PEAK 24(19P13.2) MUTATED DEL PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                            1                             19
  CLUS_2                            0                              7
  CLUS_3                            3                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(19P13.2) MUTATED        0      1      2      1
  DEL PEAK 24(19P13.2) WILD-TYPE      9     12     17      6
D37V2, multiclass
        clus
vv       DEL PEAK 24(19P13.2) MUTATED DEL PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            1                             12
  CLUS_3                            2                             17
  CLUS_4                            1                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(19P13.2) MUTATED        0      0      0      0      0      2
  DEL PEAK 24(19P13.2) WILD-TYPE      6      5      5      6      6      3
D37V3, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 24(19P13.2) MUTATED"
clus
  DEL PEAK 24(19P13.2) MUTATED DEL PEAK 24(19P13.2) WILD-TYPE 
                             2                             31 
                    TCGA-FA-8693                     TCGA-FA-A4BB 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-FA-A4XK                     TCGA-FA-A6HN 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-FA-A6HO                     TCGA-FA-A7DS 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-FA-A7Q1                     TCGA-FA-A82F 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-FA-A86F                     TCGA-FF-8041 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-FF-8042                     TCGA-FF-8043 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-FF-8046                     TCGA-FF-8047 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-FF-8061                     TCGA-FF-8062 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-FF-A7CR                     TCGA-FF-A7CW 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-FM-8000                     TCGA-G8-6325 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-G8-6326                     TCGA-G8-6906 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-G8-6914                     TCGA-GS-A9TT 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-GS-A9TV                     TCGA-GS-A9TW 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-GS-A9TX                     TCGA-GS-A9TZ 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-GS-A9U4                     TCGA-RQ-A6JB 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-VB-A8QN 
"DEL PEAK 24(19P13.2) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(19P13.2) MUTATED        0      1      1
  DEL PEAK 24(19P13.2) WILD-TYPE      6     14     11
D37V4, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 24(19P13.2) MUTATED"
clus
  DEL PEAK 24(19P13.2) MUTATED DEL PEAK 24(19P13.2) WILD-TYPE 
                             2                             31 
                    TCGA-FA-8693                     TCGA-FA-A4BB 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-FA-A4XK                     TCGA-FA-A6HN 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-FA-A6HO                     TCGA-FA-A7DS 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-FA-A7Q1                     TCGA-FA-A82F 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-FA-A86F                     TCGA-FF-8041 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-FF-8042                     TCGA-FF-8043 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-FF-8046                     TCGA-FF-8047 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-FF-8061                     TCGA-FF-8062 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-FF-A7CR                     TCGA-FF-A7CW 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-FM-8000                     TCGA-G8-6325 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-G8-6326                     TCGA-G8-6906 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-G8-6914                     TCGA-GS-A9TT 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-GS-A9TV                     TCGA-GS-A9TW 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-GS-A9TX                     TCGA-GS-A9TZ 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-GS-A9U4                     TCGA-RQ-A6JB 
"DEL PEAK 24(19P13.2) WILD-TYPE" "DEL PEAK 24(19P13.2) WILD-TYPE" 
                    TCGA-VB-A8QN 
"DEL PEAK 24(19P13.2) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(19P13.2) MUTATED        0      1      2      1      0      0
  DEL PEAK 24(19P13.2) WILD-TYPE     10     11      7      2      8      6
D37V5, multiclass
        clus
vv       DEL PEAK 24(19P13.2) MUTATED DEL PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                            0                             10
  CLUS_2                            1                             11
  CLUS_3                            2                              7
  CLUS_4                            1                              2
  CLUS_5                            0                              8
  CLUS_6                            0                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(19P13.2) MUTATED        1      1      2      0
  DEL PEAK 24(19P13.2) WILD-TYPE     21     10      5      8
D37V6, multiclass
        clus
vv       DEL PEAK 24(19P13.2) MUTATED DEL PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                            1                             21
  CLUS_2                            1                             10
  CLUS_3                            2                              5
  CLUS_4                            0                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(19P13.2) MUTATED        1      1      2
  DEL PEAK 24(19P13.2) WILD-TYPE     15     15     13
D37V7, multiclass
        clus
vv       DEL PEAK 24(19P13.2) MUTATED DEL PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            1                             15
  CLUS_3                            2                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(19P13.2) MUTATED        2      0      1      1      0
  DEL PEAK 24(19P13.2) WILD-TYPE      7     12      7     11      6
D37V8, multiclass
        clus
vv       DEL PEAK 24(19P13.2) MUTATED DEL PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            0                             12
  CLUS_3                            1                              7
  CLUS_4                            1                             11
  CLUS_5                            0                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(19P13.2) MUTATED        1      1      1      1
  DEL PEAK 24(19P13.2) WILD-TYPE      8      9      8     13
D37V9, multiclass
        clus
vv       DEL PEAK 24(19P13.2) MUTATED DEL PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            1                              9
  CLUS_3                            1                              8
  CLUS_4                            1                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(19P13.2) MUTATED        1      1      0      2
  DEL PEAK 24(19P13.2) WILD-TYPE      7     14      5     12
D37V10, multiclass
        clus
vv       DEL PEAK 24(19P13.2) MUTATED DEL PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            1                             14
  CLUS_3                            0                              5
  CLUS_4                            2                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 25(19Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(19Q13.2) MUTATED        2      0      3
  DEL PEAK 25(19Q13.2) WILD-TYPE     18      7     18
D38V1, multiclass
        clus
vv       DEL PEAK 25(19Q13.2) MUTATED DEL PEAK 25(19Q13.2) WILD-TYPE
  CLUS_1                            2                             18
  CLUS_2                            0                              7
  CLUS_3                            3                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(19Q13.2) MUTATED        0      1      4      0
  DEL PEAK 25(19Q13.2) WILD-TYPE      9     12     15      7
D38V2, multiclass
        clus
vv       DEL PEAK 25(19Q13.2) MUTATED DEL PEAK 25(19Q13.2) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            1                             12
  CLUS_3                            4                             15
  CLUS_4                            0                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(19Q13.2) MUTATED        0      0      0      1      0      1
  DEL PEAK 25(19Q13.2) WILD-TYPE      6      5      5      5      6      4
D38V3, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 25(19Q13.2) MUTATED"
clus
  DEL PEAK 25(19Q13.2) MUTATED DEL PEAK 25(19Q13.2) WILD-TYPE 
                             2                             31 
                    TCGA-FA-8693                     TCGA-FA-A4BB 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-FA-A4XK                     TCGA-FA-A6HN 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-FA-A6HO                     TCGA-FA-A7DS 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-FA-A7Q1                     TCGA-FA-A82F 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-FA-A86F                     TCGA-FF-8041 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-FF-8043                     TCGA-FF-8046 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-FF-8047                     TCGA-FF-8061 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-FF-8062                     TCGA-FF-A7CR 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-FF-A7CW                     TCGA-FM-8000 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-G8-6325                     TCGA-G8-6326 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-G8-6906                     TCGA-G8-6914 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-GS-A9TT                     TCGA-GS-A9TV 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-GS-A9TW                     TCGA-GS-A9TX 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-GS-A9TZ                     TCGA-GS-A9U4 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-RQ-A68N                     TCGA-RQ-A6JB 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-VB-A8QN 
"DEL PEAK 25(19Q13.2) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(19Q13.2) MUTATED        0      2      0
  DEL PEAK 25(19Q13.2) WILD-TYPE      6     13     12
D38V4, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 25(19Q13.2) MUTATED"
clus
  DEL PEAK 25(19Q13.2) MUTATED DEL PEAK 25(19Q13.2) WILD-TYPE 
                             2                             31 
                    TCGA-FA-8693                     TCGA-FA-A4BB 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-FA-A4XK                     TCGA-FA-A6HN 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-FA-A6HO                     TCGA-FA-A7DS 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-FA-A7Q1                     TCGA-FA-A82F 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-FA-A86F                     TCGA-FF-8041 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-FF-8043                     TCGA-FF-8046 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-FF-8047                     TCGA-FF-8061 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-FF-8062                     TCGA-FF-A7CR 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-FF-A7CW                     TCGA-FM-8000 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-G8-6325                     TCGA-G8-6326 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-G8-6906                     TCGA-G8-6914 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-GS-A9TT                     TCGA-GS-A9TV 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-GS-A9TW                     TCGA-GS-A9TX 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-GS-A9TZ                     TCGA-GS-A9U4 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-RQ-A68N                     TCGA-RQ-A6JB 
"DEL PEAK 25(19Q13.2) WILD-TYPE" "DEL PEAK 25(19Q13.2) WILD-TYPE" 
                    TCGA-VB-A8QN 
"DEL PEAK 25(19Q13.2) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(19Q13.2) MUTATED        1      1      2      0      1      0
  DEL PEAK 25(19Q13.2) WILD-TYPE      9     11      7      3      7      6
D38V5, multiclass
        clus
vv       DEL PEAK 25(19Q13.2) MUTATED DEL PEAK 25(19Q13.2) WILD-TYPE
  CLUS_1                            1                              9
  CLUS_2                            1                             11
  CLUS_3                            2                              7
  CLUS_4                            0                              3
  CLUS_5                            1                              7
  CLUS_6                            0                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(19Q13.2) MUTATED        2      1      1      1
  DEL PEAK 25(19Q13.2) WILD-TYPE     20     10      6      7
D38V6, multiclass
        clus
vv       DEL PEAK 25(19Q13.2) MUTATED DEL PEAK 25(19Q13.2) WILD-TYPE
  CLUS_1                            2                             20
  CLUS_2                            1                             10
  CLUS_3                            1                              6
  CLUS_4                            1                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(19Q13.2) MUTATED        2      1      2
  DEL PEAK 25(19Q13.2) WILD-TYPE     14     15     13
D38V7, multiclass
        clus
vv       DEL PEAK 25(19Q13.2) MUTATED DEL PEAK 25(19Q13.2) WILD-TYPE
  CLUS_1                            2                             14
  CLUS_2                            1                             15
  CLUS_3                            2                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(19Q13.2) MUTATED        2      1      0      2      0
  DEL PEAK 25(19Q13.2) WILD-TYPE      7     11      8     10      6
D38V8, multiclass
        clus
vv       DEL PEAK 25(19Q13.2) MUTATED DEL PEAK 25(19Q13.2) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            1                             11
  CLUS_3                            0                              8
  CLUS_4                            2                             10
  CLUS_5                            0                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(19Q13.2) MUTATED        0      1      1      1
  DEL PEAK 25(19Q13.2) WILD-TYPE      9      9      8     13
D38V9, multiclass
        clus
vv       DEL PEAK 25(19Q13.2) MUTATED DEL PEAK 25(19Q13.2) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            1                              9
  CLUS_3                            1                              8
  CLUS_4                            1                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(19Q13.2) MUTATED        0      1      0      2
  DEL PEAK 25(19Q13.2) WILD-TYPE      8     14      5     12
D38V10, multiclass
        clus
vv       DEL PEAK 25(19Q13.2) MUTATED DEL PEAK 25(19Q13.2) WILD-TYPE
  CLUS_1                            0                              8
  CLUS_2                            1                             14
  CLUS_3                            0                              5
  CLUS_4                            2                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 26(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(22Q13.31) MUTATED        2      0      5
  DEL PEAK 26(22Q13.31) WILD-TYPE     18      7     16
D39V1, multiclass
        clus
vv       DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE
  CLUS_1                             2                              18
  CLUS_2                             0                               7
  CLUS_3                             5                              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(22Q13.31) MUTATED        0      3      3      1
  DEL PEAK 26(22Q13.31) WILD-TYPE      9     10     16      6
D39V2, multiclass
        clus
vv       DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE
  CLUS_1                             0                               9
  CLUS_2                             3                              10
  CLUS_3                             3                              16
  CLUS_4                             1                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(22Q13.31) MUTATED        2      1      2      0      1      0
  DEL PEAK 26(22Q13.31) WILD-TYPE      4      4      3      6      5      5
D39V3, multiclass
        clus
vv       DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE
  CLUS_1                             2                               4
  CLUS_2                             1                               4
  CLUS_3                             2                               3
  CLUS_4                             0                               6
  CLUS_5                             1                               5
  CLUS_6                             0                               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(22Q13.31) MUTATED        1      2      3
  DEL PEAK 26(22Q13.31) WILD-TYPE      5     13      9
D39V4, multiclass
        clus
vv       DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE
  CLUS_1                             1                               5
  CLUS_2                             2                              13
  CLUS_3                             3                               9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(22Q13.31) MUTATED        0      2      1      2      1      1
  DEL PEAK 26(22Q13.31) WILD-TYPE     10     10      8      1      7      5
D39V5, multiclass
        clus
vv       DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE
  CLUS_1                             0                              10
  CLUS_2                             2                              10
  CLUS_3                             1                               8
  CLUS_4                             2                               1
  CLUS_5                             1                               7
  CLUS_6                             1                               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(22Q13.31) MUTATED        3      2      2      0
  DEL PEAK 26(22Q13.31) WILD-TYPE     19      9      5      8
D39V6, multiclass
        clus
vv       DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE
  CLUS_1                             3                              19
  CLUS_2                             2                               9
  CLUS_3                             2                               5
  CLUS_4                             0                               8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(22Q13.31) MUTATED        2      2      3
  DEL PEAK 26(22Q13.31) WILD-TYPE     14     14     12
D39V7, multiclass
        clus
vv       DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE
  CLUS_1                             2                              14
  CLUS_2                             2                              14
  CLUS_3                             3                              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(22Q13.31) MUTATED        1      1      2      2      1
  DEL PEAK 26(22Q13.31) WILD-TYPE      8     11      6     10      5
D39V8, multiclass
        clus
vv       DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE
  CLUS_1                             1                               8
  CLUS_2                             1                              11
  CLUS_3                             2                               6
  CLUS_4                             2                              10
  CLUS_5                             1                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(22Q13.31) MUTATED        1      1      3      1
  DEL PEAK 26(22Q13.31) WILD-TYPE      8      9      6     13
D39V9, multiclass
        clus
vv       DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE
  CLUS_1                             1                               8
  CLUS_2                             1                               9
  CLUS_3                             3                               6
  CLUS_4                             1                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(22Q13.31) MUTATED        1      2      1      2
  DEL PEAK 26(22Q13.31) WILD-TYPE      7     13      4     12
D39V10, multiclass
        clus
vv       DEL PEAK 26(22Q13.31) MUTATED DEL PEAK 26(22Q13.31) WILD-TYPE
  CLUS_1                             1                               7
  CLUS_2                             2                              13
  CLUS_3                             1                               4
  CLUS_4                             2                              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
