Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_GRAFT_VERSUS_HOST_DISEASE.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_ADAPTIVE_IMMUNE_SYSTEM.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_IMMUNOREGULATORY_INTERACTIONS_BETWEEN_A_LYMPHOID_AND_A_NON_LYMPHOID_CELL.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_ANTIGEN_PRESENTATION_FOLDING_ASSEMBLY_AND_PEPTIDE_LOADING_OF_CLASS_I_MHC.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_INTERFERON_SIGNALING.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_INTERFERON_ALPHA_BETA_SIGNALING.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_IMMUNE_SYSTEM.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_ENDOSOMAL_VACUOLAR_PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_AUTOIMMUNE_THYROID_DISEASE.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_APOPTOSIS.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_INTERFERON_GAMMA_SIGNALING.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_CLASS_I_MHC_MEDIATED_ANTIGEN_PROCESSING_PRESENTATION.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	ST_FAS_SIGNALING_PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_ALLOGRAFT_REJECTION.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_B_CELL_RECEPTOR_SIGNALING_PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_ANTIGEN_PROCESSING_AND_PRESENTATION.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_TYPE_I_DIABETES_MELLITUS.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_ER_PHAGOSOME_PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_ANTIGEN_PROCESSING_CROSS_PRESENTATION.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	basic_data_info.txt	enriched_pathway_genset_info	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	MutSig2CV.input.genenames.txt	enriched_pathway_hypergeometricTest_input	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	MutSig2CV.input.genenames.txt	enriched_pathway_hypergeometricTest_input	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	heatmap.png	enriched_pathways_hypergeometricTest_result	Level_4	png	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	heatmap.pdf	enriched_pathways_hypergeometricTest	Level_4	pdf	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
GDAC_Pathway_Overlaps_HypergeometricTest:input.genenames.file	sig_genes.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_GRAFT_VERSUS_HOST_DISEASE.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_ADAPTIVE_IMMUNE_SYSTEM.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_IMMUNOREGULATORY_INTERACTIONS_BETWEEN_A_LYMPHOID_AND_A_NON_LYMPHOID_CELL.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_ANTIGEN_PRESENTATION_FOLDING_ASSEMBLY_AND_PEPTIDE_LOADING_OF_CLASS_I_MHC.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_INTERFERON_SIGNALING.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_INTERFERON_ALPHA_BETA_SIGNALING.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_IMMUNE_SYSTEM.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_ENDOSOMAL_VACUOLAR_PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_AUTOIMMUNE_THYROID_DISEASE.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_APOPTOSIS.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_INTERFERON_GAMMA_SIGNALING.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_CLASS_I_MHC_MEDIATED_ANTIGEN_PROCESSING_PRESENTATION.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	ST_FAS_SIGNALING_PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_ALLOGRAFT_REJECTION.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_B_CELL_RECEPTOR_SIGNALING_PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_ANTIGEN_PROCESSING_AND_PRESENTATION.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	KEGG_TYPE_I_DIABETES_MELLITUS.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_ER_PHAGOSOME_PATHWAY.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	REACTOME_ANTIGEN_PROCESSING_CROSS_PRESENTATION.genes.list.txt	enriched_pathway_gene_list	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	basic_data_info.txt	enriched_pathway_genset_info	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	MutSig2CV.input.genenames.txt	enriched_pathway_hypergeometricTest_input	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	MutSig2CV.input.genenames.txt	enriched_pathway_hypergeometricTest_input	Level_4	text	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	heatmap.png	enriched_pathways_hypergeometricTest_result	Level_4	png	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
MSigDB_C2_pathways	c2.cp.v4.0.symbols.gmt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:11009:19	Pathway_Overlaps_MSigDB_MutSig2CV_2016012800	heatmap.pdf	enriched_pathways_hypergeometricTest	Level_4	pdf	gdac.broadinstitute.org_DLBC-TP.Pathway_Overlaps_MSigDB_MutSig2CV.Level_4.2016012800.0.0	yes
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