Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
GDAC_IntersectSamples:mrnafile	GBMLGG-TP.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt	gdac.broadinstitute.org_GBMLGG-TP.Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_correlategenes.summary.gct	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_IntersectSamples:mrnafile	GBMLGG-TP.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt	gdac.broadinstitute.org_GBMLGG-TP.Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_correlategenes.corr.txt	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_IntersectSamples:mrnafile	GBMLGG-TP.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt	gdac.broadinstitute.org_GBMLGG-TP.Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_intersectsamples.summary.gct	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_IntersectSamples:mrnafile	GBMLGG-TP.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt	gdac.broadinstitute.org_GBMLGG-TP.Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	mir_genes_networks_directly.png	miR_gene_network	Level_4	png	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_IntersectSamples:mrnafile	GBMLGG-TP.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt	gdac.broadinstitute.org_GBMLGG-TP.Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_directtargets.summary.gct	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_IntersectSamples:mrnafile	GBMLGG-TP.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt	gdac.broadinstitute.org_GBMLGG-TP.Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_directtargets.corr.3db.txt	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_IntersectSamples:mrnafile	GBMLGG-TP.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt	gdac.broadinstitute.org_GBMLGG-TP.Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_directtargets.corr.txt	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_IntersectSamples:mrnafile	GBMLGG-TP.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt	gdac.broadinstitute.org_GBMLGG-TP.Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_directtargets.mirna.sortednodes	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_IntersectSamples:mrnafile	GBMLGG-TP.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt	gdac.broadinstitute.org_GBMLGG-TP.Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_directtargets.mrna.sortednodes	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_IntersectSamples:mrnafile	GBMLGG-TP.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt	gdac.broadinstitute.org_GBMLGG-TP.Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_IntersectSamples:mrnafile	GBMLGG-TP.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt	gdac.broadinstitute.org_GBMLGG-TP.Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_IntersectSamples:mirnafile	GBMLGG-TP.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_GBMLGG-TP.Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_correlategenes.summary.gct	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_IntersectSamples:mirnafile	GBMLGG-TP.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_GBMLGG-TP.Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_correlategenes.corr.txt	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_IntersectSamples:mirnafile	GBMLGG-TP.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_GBMLGG-TP.Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_intersectsamples.summary.gct	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_IntersectSamples:mirnafile	GBMLGG-TP.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_GBMLGG-TP.Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	mir_genes_networks_directly.png	miR_gene_network	Level_4	png	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_IntersectSamples:mirnafile	GBMLGG-TP.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_GBMLGG-TP.Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_directtargets.summary.gct	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_IntersectSamples:mirnafile	GBMLGG-TP.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_GBMLGG-TP.Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_directtargets.corr.3db.txt	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_IntersectSamples:mirnafile	GBMLGG-TP.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_GBMLGG-TP.Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_directtargets.corr.txt	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_IntersectSamples:mirnafile	GBMLGG-TP.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_GBMLGG-TP.Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_directtargets.mirna.sortednodes	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_IntersectSamples:mirnafile	GBMLGG-TP.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_GBMLGG-TP.Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_directtargets.mrna.sortednodes	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_IntersectSamples:mirnafile	GBMLGG-TP.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_GBMLGG-TP.Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_IntersectSamples:mirnafile	GBMLGG-TP.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt	gdac.broadinstitute.org_GBMLGG-TP.Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.Level_3.0.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_DirectTargets:mapfile	human_interactions.predicted.v2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_correlategenes.summary.gct	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_DirectTargets:mapfile	human_interactions.predicted.v2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_correlategenes.corr.txt	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_DirectTargets:mapfile	human_interactions.predicted.v2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_intersectsamples.summary.gct	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_DirectTargets:mapfile	human_interactions.predicted.v2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	mir_genes_networks_directly.png	miR_gene_network	Level_4	png	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_DirectTargets:mapfile	human_interactions.predicted.v2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_directtargets.summary.gct	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_DirectTargets:mapfile	human_interactions.predicted.v2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_directtargets.corr.3db.txt	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_DirectTargets:mapfile	human_interactions.predicted.v2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_directtargets.corr.txt	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_DirectTargets:mapfile	human_interactions.predicted.v2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_directtargets.mirna.sortednodes	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_DirectTargets:mapfile	human_interactions.predicted.v2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	gdac_directtargets.mrna.sortednodes	miR_Direct_Targets	Level_4	text	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_DirectTargets:mapfile	human_interactions.predicted.v2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
GDAC_DirectTargets:mapfile	human_interactions.predicted.v2.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00146:56	miR_FindDirectTargets_2016012800	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_GBMLGG-TP.miR_FindDirectTargets.Level_4.2016012800.0.0	yes
